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Conserved domains on  [gi|350539323|ref|NP_001234643|]
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blind [Solanum lycopersicum]

Protein Classification

SANT/Myb-like DNA-binding domain-containing protein( domain architecture ID 999994)

SANT (SWI3, ADA2, N-CoR and TFIIIB)/Myb-like DNA-binding domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03091 super family cl33633
hypothetical protein; Provisional
 1-117 1.82e-49

hypothetical protein; Provisional


The actual alignment was detected with superfamily member PLN03091:

Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 170.93  E-value: 1.82e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350539323   1 MGRAPCCDKANVKRGPWSPEEDAKLKDFIHKFGTaGNWIALPQKAGLRRCGKSCRLRWLNYLRPNIKHGDFSDDEDRVIC 80
Cdd:PLN03091   1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGH-GCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLII 79

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 350539323  81 NLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKL 117
Cdd:PLN03091  80 ELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKL 116
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 1-117 1.82e-49

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 170.93  E-value: 1.82e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350539323   1 MGRAPCCDKANVKRGPWSPEEDAKLKDFIHKFGTaGNWIALPQKAGLRRCGKSCRLRWLNYLRPNIKHGDFSDDEDRVIC 80
Cdd:PLN03091   1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGH-GCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLII 79

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 350539323  81 NLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKL 117
Cdd:PLN03091  80 ELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKL 116
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 11-110 3.56e-15

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 75.59  E-value: 3.56e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350539323  11 NVKRGPWSPEEDAKLKDFIHKFGTaGNWIALPQKAGlRRCGKSCRLRWLNYLRPNIKHGDFSDDEDRVICNLYANIGSRW 90
Cdd:COG5147   17 KRKGGSWKRTEDEDLKALVKKLGP-NNWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQW 94

                         90       100
                 ....*....|....*....|
gi 350539323  91 SIIAAQLPGRTDNDIKNYWN 110
Cdd:COG5147   95 STIADYKDRRTAQQCVERYV 114
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 14-62 7.43e-13

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 62.14  E-value: 7.43e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 350539323   14 RGPWSPEEDAKLKDFIHKFGtaGNWIALPQKAGlRRCGKSCRLRWLNYL 62
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLG--NRWKKIAKLLP-GRTDNQCKNRWQNYL 46
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
14-64 1.65e-09

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 52.61  E-value: 1.65e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 350539323    14 RGPWSPEEDAKLKDFIHKFGTaGNWIALPQKAGlRRCGKSCRLRWLNYLRP 64
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGK-NNWEKIAKELP-GRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 16-62 4.96e-09

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 51.42  E-value: 4.96e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 350539323  16 PWSPEEDAKLKDFIHKFGTaGNWIALPQKAGlRRCGKSCRLRWLNYL 62
Cdd:cd00167    1 PWTEEEDELLLEAVKKYGK-NNWEKIAKELP-GRTPKQCRERWRNLL 45
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 1-117 1.82e-49

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 170.93  E-value: 1.82e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350539323   1 MGRAPCCDKANVKRGPWSPEEDAKLKDFIHKFGTaGNWIALPQKAGLRRCGKSCRLRWLNYLRPNIKHGDFSDDEDRVIC 80
Cdd:PLN03091   1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGH-GCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLII 79

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 350539323  81 NLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKL 117
Cdd:PLN03091  80 ELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKL 116
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 5-118 8.78e-47

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 158.32  E-value: 8.78e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350539323   5 PCCDKANVKRGPWSPEEDAKLKDFIHKFGTaGNWIALPQKAGLRRCGKSCRLRWLNYLRPNIKHGDFSDDEDRVICNLYA 84
Cdd:PLN03212  16 PCCTKMGMKRGPWTVEEDEILVSFIKKEGE-GRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHR 94

                         90       100       110
                 ....*....|....*....|....*....|....
gi 350539323  85 NIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLM 118
Cdd:PLN03212  95 LLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLL 128
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 11-110 3.56e-15

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 75.59  E-value: 3.56e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 350539323  11 NVKRGPWSPEEDAKLKDFIHKFGTaGNWIALPQKAGlRRCGKSCRLRWLNYLRPNIKHGDFSDDEDRVICNLYANIGSRW 90
Cdd:COG5147   17 KRKGGSWKRTEDEDLKALVKKLGP-NNWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQW 94

                         90       100
                 ....*....|....*....|
gi 350539323  91 SIIAAQLPGRTDNDIKNYWN 110
Cdd:COG5147   95 STIADYKDRRTAQQCVERYV 114
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 14-62 7.43e-13

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 62.14  E-value: 7.43e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 350539323   14 RGPWSPEEDAKLKDFIHKFGtaGNWIALPQKAGlRRCGKSCRLRWLNYL 62
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLG--NRWKKIAKLLP-GRTDNQCKNRWQNYL 46
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 68-113 2.90e-11

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 57.51  E-value: 2.90e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 350539323   68 HGDFSDDEDRVICNLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKL 113
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
14-64 1.65e-09

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 52.61  E-value: 1.65e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 350539323    14 RGPWSPEEDAKLKDFIHKFGTaGNWIALPQKAGlRRCGKSCRLRWLNYLRP 64
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGK-NNWEKIAKELP-GRTAEQCRERWRNLLKP 49
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 17-77 3.64e-09

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 52.31  E-value: 3.64e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 350539323   17 WSPEEDAKLKDFIHKFGtaGNW--IAlpqKAGLRRCGKSCRLRWLNYLRPNIKHGDFSDDEDR 77
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYG--NDWkqIA---KELGRRTPKQCFDRWRRKLNPKISRGPWSKEEDQ 58
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 16-62 4.96e-09

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 51.42  E-value: 4.96e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 350539323  16 PWSPEEDAKLKDFIHKFGTaGNWIALPQKAGlRRCGKSCRLRWLNYL 62
Cdd:cd00167    1 PWTEEEDELLLEAVKKYGK-NNWEKIAKELP-GRTPKQCRERWRNLL 45
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 71-113 5.88e-07

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 45.64  E-value: 5.88e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 350539323  71 FSDDEDRVICNLYANIGS-RWSIIAAQLPGRTDNDIKNYWNTKL 113
Cdd:cd00167    2 WTEEEDELLLEAVKKYGKnNWEKIAKELPGRTPKQCRERWRNLL 45
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 71-117 6.40e-06

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 43.07  E-value: 6.40e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 350539323   71 FSDDEDRVICNLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKL 117
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYGNDWKQIAKELGRRTPKQCFDRWRRKLNPKI 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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