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Conserved domains on  [gi|334186910|ref|NP_001190834|]
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Fe superoxide dismutase 1 [Arabidopsis thaliana]

Protein Classification

PLN02184 family protein( domain architecture ID 11476519)

PLN02184 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN02184 PLN02184
superoxide dismutase [Fe]
 1-212 5.96e-148

superoxide dismutase [Fe]


:

Pssm-ID: 177838  Cd Length: 212  Bit Score: 409.91  E-value: 5.96e-148
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186910   1 MAASSAVTANYVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPLEHIIHSTYNNGDLLPAFNN 80
Cdd:PLN02184   1 MAASSAVTANYVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPLEHIIHSTYNNGDLLPAFNN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186910  81 AAQAWNHEFFWESMKPGGGGKPSGELLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAYSNEKLKVVKTPNAVNPLVL 160
Cdd:PLN02184  81 AAQAWNHEFFWESMKPGGGGKPSGELLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAYSNEKLKVVKTPNAVNPLVL 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 334186910 161 GSFPLLTIDVWEHAYYLDFQNRRPDYIKTFMTNLVSWEAVSARLEAAKAASA 212
Cdd:PLN02184 161 GSFPLLTIDVWEHAYYLDFQNRRPDYIKTFMTNLVSWEAVSARLEAAKAASA 212
 
Name Accession Description Interval E-value
PLN02184 PLN02184
superoxide dismutase [Fe]
 1-212 5.96e-148

superoxide dismutase [Fe]


Pssm-ID: 177838  Cd Length: 212  Bit Score: 409.91  E-value: 5.96e-148
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186910   1 MAASSAVTANYVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPLEHIIHSTYNNGDLLPAFNN 80
Cdd:PLN02184   1 MAASSAVTANYVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPLEHIIHSTYNNGDLLPAFNN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186910  81 AAQAWNHEFFWESMKPGGGGKPSGELLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAYSNEKLKVVKTPNAVNPLVL 160
Cdd:PLN02184  81 AAQAWNHEFFWESMKPGGGGKPSGELLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAYSNEKLKVVKTPNAVNPLVL 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 334186910 161 GSFPLLTIDVWEHAYYLDFQNRRPDYIKTFMTNLVSWEAVSARLEAAKAASA 212
Cdd:PLN02184 161 GSFPLLTIDVWEHAYYLDFQNRRPDYIKTFMTNLVSWEAVSARLEAAKAASA 212
SodA COG0605
Superoxide dismutase [Inorganic ion transport and metabolism];
13-203 3.51e-89

Superoxide dismutase [Inorganic ion transport and metabolism];


Pssm-ID: 440370 [Multi-domain]  Cd Length: 192  Bit Score: 260.45  E-value: 3.51e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186910  13 LKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGT-ELEGKPLEHIIhSTYNNGDLLPAFNNAAQAWNHEFFW 91
Cdd:COG0605    2 LPPLPYAYDALEPHISAETMELHHDKHHQAYVNNLNAALEGLaELEDKSLEEII-KKLSEELKRALRNNAGGHWNHTLFW 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186910  92 ESMKPGGGGKPSGELLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAY-SNEKLKVVKTPNAVNPLVLGSFPLLTIDV 170
Cdd:COG0605   81 ENLSPNGGGEPTGELAAAIEADFGSFDAFKEEFKAAAAGRFGSGWAWLVVdKDGKLEIVSTPNQDNPLMAGGTPLLGLDV 160

                        170       180       190
                 ....*....|....*....|....*....|...
gi 334186910 171 WEHAYYLDFQNRRPDYIKTFMtNLVSWEAVSAR 203
Cdd:COG0605  161 WEHAYYLDYQNRRPDYVDAFW-NVVNWDFVEKR 192
Sod_Fe_C pfam02777
Iron/manganese superoxide dismutases, C-terminal domain; superoxide dismutases (SODs) catalyze ...
 105-203 4.23e-50

Iron/manganese superoxide dismutases, C-terminal domain; superoxide dismutases (SODs) catalyze the conversion of superoxide radicals to hydrogen peroxide and molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one. In humans, there is a cytoplasmic Cu/Zn SOD, and a mitochondrial Mn/Fe SOD. C-terminal domain is a mixed alpha/beta fold.


Pssm-ID: 460691  Cd Length: 102  Bit Score: 157.97  E-value: 4.23e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186910  105 ELLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAY-SNEKLKVVKTPNAVNPLVLGSFPLLTIDVWEHAYYLDFQNRR 183
Cdd:pfam02777   4 ALAEAIEKDFGSFDAFKEEFNAAAAGVFGSGWAWLVYdPDGKLEIVTTPNQDNPLTDGLTPLLGLDVWEHAYYLDYQNRR 83

                          90       100
                  ....*....|....*....|
gi 334186910  184 PDYIKTFMtNLVSWEAVSAR 203
Cdd:pfam02777  84 ADYVKAFW-NVVNWDEVEKR 102
 
Name Accession Description Interval E-value
PLN02184 PLN02184
superoxide dismutase [Fe]
 1-212 5.96e-148

superoxide dismutase [Fe]


Pssm-ID: 177838  Cd Length: 212  Bit Score: 409.91  E-value: 5.96e-148
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186910   1 MAASSAVTANYVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPLEHIIHSTYNNGDLLPAFNN 80
Cdd:PLN02184   1 MAASSAVTANYVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPLEHIIHSTYNNGDLLPAFNN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186910  81 AAQAWNHEFFWESMKPGGGGKPSGELLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAYSNEKLKVVKTPNAVNPLVL 160
Cdd:PLN02184  81 AAQAWNHEFFWESMKPGGGGKPSGELLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAYSNEKLKVVKTPNAVNPLVL 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 334186910 161 GSFPLLTIDVWEHAYYLDFQNRRPDYIKTFMTNLVSWEAVSARLEAAKAASA 212
Cdd:PLN02184 161 GSFPLLTIDVWEHAYYLDFQNRRPDYIKTFMTNLVSWEAVSARLEAAKAASA 212
PLN02685 PLN02685
iron superoxide dismutase
 2-212 7.06e-119

iron superoxide dismutase


Pssm-ID: 215369  Cd Length: 299  Bit Score: 339.67  E-value: 7.06e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186910   2 AASSAVTANYVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPLEHIIHSTYNNGDLLPAFNNA 81
Cdd:PLN02685  38 AVSGVITAKFELKPPPYPLDALEPHMSRETLEYHWGKHHRAYVDNLNKQIVGTELDGMSLEDVVLITYNKGDMLPAFNNA 117

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186910  82 AQAWNHEFFWESMKPGGGGKPSGELLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAY-----------------SNE 144
Cdd:PLN02685 118 AQAWNHEFFWESMKPGGGGKPSGELLQLIERDFGSFERFVEEFKSAAATQFGSGWAWLAYkanrldvgnavnpcpseEDK 197

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 334186910 145 KLKVVKTPNAVNPLVLGSFPLLTIDVWEHAYYLDFQNRRPDYIKTFMTNLVSWEAVSARLEAAKAASA 212
Cdd:PLN02685 198 KLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISTFMEKLVSWEAVSARLESAKARAA 265
SodA COG0605
Superoxide dismutase [Inorganic ion transport and metabolism];
13-203 3.51e-89

Superoxide dismutase [Inorganic ion transport and metabolism];


Pssm-ID: 440370 [Multi-domain]  Cd Length: 192  Bit Score: 260.45  E-value: 3.51e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186910  13 LKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGT-ELEGKPLEHIIhSTYNNGDLLPAFNNAAQAWNHEFFW 91
Cdd:COG0605    2 LPPLPYAYDALEPHISAETMELHHDKHHQAYVNNLNAALEGLaELEDKSLEEII-KKLSEELKRALRNNAGGHWNHTLFW 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186910  92 ESMKPGGGGKPSGELLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAY-SNEKLKVVKTPNAVNPLVLGSFPLLTIDV 170
Cdd:COG0605   81 ENLSPNGGGEPTGELAAAIEADFGSFDAFKEEFKAAAAGRFGSGWAWLVVdKDGKLEIVSTPNQDNPLMAGGTPLLGLDV 160

                        170       180       190
                 ....*....|....*....|....*....|...
gi 334186910 171 WEHAYYLDFQNRRPDYIKTFMtNLVSWEAVSAR 203
Cdd:COG0605  161 WEHAYYLDYQNRRPDYVDAFW-NVVNWDFVEKR 192
PLN02622 PLN02622
iron superoxide dismutase
 4-209 5.09e-85

iron superoxide dismutase


Pssm-ID: 166263 [Multi-domain]  Cd Length: 261  Bit Score: 252.24  E-value: 5.09e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186910   4 SSAVTANYVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTE-LEGKPLEHIIHSTYNNGDLLPAFNNAA 82
Cdd:PLN02622  41 ASKVVAYYGLKTPPYPLDALEPYMSRRTLEVHWGEHHRGYVEGLNKQLAKDDiLYGYTMDELVKVTYNNGNPLPEFNNAA 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186910  83 QAWNHEFFWESMKPGGGGKPSGELLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAYSNE--KLKVVKTPNAVNPLVL 160
Cdd:PLN02622 121 QVWNHDFFWESMQPGGGDMPELGVLEQIEKDFGSFTNFREKFTEAALTLFGSGWVWLVLKREerRLEVVKTSNAINPLVW 200

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 334186910 161 GSFPLLTIDVWEHAYYLDFQNRRPDYIKTFMTNLVSWEAVSARLEAAKA 209
Cdd:PLN02622 201 DDIPIICLDVWEHAYYLDYKNDRGKYVNAFMNHLVSWNAAMARMARAEA 249
PTZ00078 PTZ00078
Superoxide dismutase [Fe]; Provisional
 17-207 7.73e-56

Superoxide dismutase [Fe]; Provisional


Pssm-ID: 185432 [Multi-domain]  Cd Length: 193  Bit Score: 175.75  E-value: 7.73e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186910  17 PFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPLEHIIHSTYNngdllPAFNNAAQAWNHEFFWESMKP 96
Cdd:PTZ00078   4 PYGLKELSPHLSEETLKFHYSKHHAGYVNKLNGLIKGTPLENKTLEELIKEYSG-----AVFNNAAQIWNHNFYWLSMGP 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186910  97 GGGGKPSGELLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAYSNE-KLKVVKTPNAVNPLV--LGSfPLLTIDVWEH 173
Cdd:PTZ00078  79 NGGGEPTGEIKEKIDEKFGSFDNFKNEFSNVLSGHFGSGWGWLVLKNDgKLEIVQTHDAGNPIKdnTGK-PLLTCDIWEH 157

                        170       180       190
                 ....*....|....*....|....*....|....
gi 334186910 174 AYYLDFQNRRPDYIKTFMtNLVSWEAVSARLEAA 207
Cdd:PTZ00078 158 AYYIDYRNDRASYVNSWW-NKVNWDFANKNLKKL 190
PRK10543 PRK10543
superoxide dismutase [Fe];
17-206 1.82e-55

superoxide dismutase [Fe];


Pssm-ID: 182534  Cd Length: 193  Bit Score: 174.76  E-value: 1.82e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186910  17 PFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPLEHIIHSTynNGDLlpaFNNAAQAWNHEFFWESMKP 96
Cdd:PRK10543   9 PYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIVRSS--EGGV---FNNAAQVWNHTFYWNCLAP 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186910  97 GGGGKPSGELLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAYSNE-KLKVVKTPNAVNPLVLGSFPLLTIDVWEHAY 175
Cdd:PRK10543  84 NAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNADgKLAIVSTSNAGTPLTTDATPLLTVDVWEHAY 163

                        170       180       190
                 ....*....|....*....|....*....|.
gi 334186910 176 YLDFQNRRPDYIKTFMTnLVSWEAVSARLEA 206
Cdd:PRK10543 164 YIDYRNARPGYLEHFWA-LVNWEFVAKNLAA 193
PRK10925 PRK10925
superoxide dismutase [Mn];
10-208 3.34e-54

superoxide dismutase [Mn];


Pssm-ID: 182843  Cd Length: 206  Bit Score: 172.03  E-value: 3.34e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186910  10 NYVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLG-TELEGKPLEHIIHSTynngDLLPA------FNNAA 82
Cdd:PRK10925   2 SYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESlPEFANLPVEELITKL----DQLPAdkktvlRNNAG 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186910  83 QAWNHEFFWESMKPGGGGKPsgELLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAYSNEKLKVVKTPNAVNPLV--- 159
Cdd:PRK10925  78 GHANHSLFWKGLKKGTTLQG--DLKAAIERDFGSVDNFKAEFEKAAATRFGSGWAWLVLKGDKLAVVSTANQDSPLMgea 155

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 334186910 160 ---LGSFPLLTIDVWEHAYYLDFQNRRPDYIKTFMtNLVSWEAVSARLEAAK 208
Cdd:PRK10925 156 isgASGFPILGLDVWEHAYYLKFQNRRPDYIKEFW-NVVNWDEAAARFAAKK 206
Sod_Fe_C pfam02777
Iron/manganese superoxide dismutases, C-terminal domain; superoxide dismutases (SODs) catalyze ...
 105-203 4.23e-50

Iron/manganese superoxide dismutases, C-terminal domain; superoxide dismutases (SODs) catalyze the conversion of superoxide radicals to hydrogen peroxide and molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one. In humans, there is a cytoplasmic Cu/Zn SOD, and a mitochondrial Mn/Fe SOD. C-terminal domain is a mixed alpha/beta fold.


Pssm-ID: 460691  Cd Length: 102  Bit Score: 157.97  E-value: 4.23e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186910  105 ELLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAY-SNEKLKVVKTPNAVNPLVLGSFPLLTIDVWEHAYYLDFQNRR 183
Cdd:pfam02777   4 ALAEAIEKDFGSFDAFKEEFNAAAAGVFGSGWAWLVYdPDGKLEIVTTPNQDNPLTDGLTPLLGLDVWEHAYYLDYQNRR 83

                          90       100
                  ....*....|....*....|
gi 334186910  184 PDYIKTFMtNLVSWEAVSAR 203
Cdd:pfam02777  84 ADYVKAFW-NVVNWDEVEKR 102
Sod_Fe_N pfam00081
Iron/manganese superoxide dismutases, alpha-hairpin domain; superoxide dismutases (SODs) ...
 11-94 2.08e-25

Iron/manganese superoxide dismutases, alpha-hairpin domain; superoxide dismutases (SODs) catalyze the conversion of superoxide radicals to hydrogen peroxide and molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one. In humans, there is a cytoplasmic Cu/Zn SOD, and a mitochondrial Mn/Fe SOD. N-terminal domain is a long alpha antiparallel hairpin. A small fragment of YTRE_LEPBI matches well - sequencing error?


Pssm-ID: 425457  Cd Length: 82  Bit Score: 94.29  E-value: 2.08e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186910   11 YVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPLEHIIhstyNNGDLLPAFNNAAQAWNHEFF 90
Cdd:pfam00081   2 YELPDLPYAYDALEPHISKETMEIHHTKHHQTYVNNLNAALEGLEEARKPLEELI----IKALLGGLFNNGGGHWNHSLF 77


                  ....
gi 334186910   91 WESM 94
Cdd:pfam00081  78 WKNL 81
PLN02471 PLN02471
superoxide dismutase [Mn]
 17-188 5.52e-24

superoxide dismutase [Mn]


Pssm-ID: 215262  Cd Length: 231  Bit Score: 94.97  E-value: 5.52e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186910  17 PFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVlgtelegkpleHIIHSTYNNGD------LLPA--FNNAAQAwNHE 88
Cdd:PLN02471  37 PYDYGALEPAISGEIMQLHHQKHHQTYVTNYNKAL-----------EQLDQAVEKGDasavvkLQSAikFNGGGHV-NHS 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186910  89 FFWESMKPGGG---GKPSGELLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAYSNEKLK-VVKTPNAVNPLVLGS-- 162
Cdd:PLN02471 105 IFWKNLAPVSEgggEPPHGSLGWAIDEHFGSLEALVKKMSAEGAAVQGSGWVWLGLDKELKKlVVETTANQDPLVTKGps 184

                        170       180
                 ....*....|....*....|....*..
gi 334186910 163 -FPLLTIDVWEHAYYLDFQNRRPDYIK 188
Cdd:PLN02471 185 lVPLLGIDVWEHAYYLQYKNVRPDYLK 211
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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