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Conserved domains on  [gi|334188674|ref|NP_001190634|]
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kinectin-like protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Golgin_A5 super family cl25511
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ...
150-311 7.98e-03

Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.


The actual alignment was detected with superfamily member pfam09787:

Pssm-ID: 462900 [Multi-domain]  Cd Length: 305  Bit Score: 37.43  E-value: 7.98e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188674  150 LSQEEIQRKVGQLENMSVKLEDMEKFALGTSSilcEMRQRVDDLVEETSRQKQRATENELELSRVRRDFESLKSyvtSLI 229
Cdd:pfam09787  58 LLREEIQKLRGQIQQLRTELQELEAQQQEEAE---SSREQLQELEEQLATERSARREAEAELERLQEELRYLEE---ELR 131
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188674  230 SVRETLVSSEKQFQT-IERLfeRFIIVSKFAFMAScfrgyKQKLVAKTTQLESEKVQKEAEVQKLMEENVRLTALVDKKE 308
Cdd:pfam09787 132 RSKATLQSRIKDREAeIEKL--RNQLTSKSQSSSS-----QSELENRLHQLTETLIQKQTMLEALSTEKNSLVLQLERME 204

                  ...
gi 334188674  309 AQL 311
Cdd:pfam09787 205 QQI 207
 
Name Accession Description Interval E-value
Golgin_A5 pfam09787
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ...
150-311 7.98e-03

Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.


Pssm-ID: 462900 [Multi-domain]  Cd Length: 305  Bit Score: 37.43  E-value: 7.98e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188674  150 LSQEEIQRKVGQLENMSVKLEDMEKFALGTSSilcEMRQRVDDLVEETSRQKQRATENELELSRVRRDFESLKSyvtSLI 229
Cdd:pfam09787  58 LLREEIQKLRGQIQQLRTELQELEAQQQEEAE---SSREQLQELEEQLATERSARREAEAELERLQEELRYLEE---ELR 131
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188674  230 SVRETLVSSEKQFQT-IERLfeRFIIVSKFAFMAScfrgyKQKLVAKTTQLESEKVQKEAEVQKLMEENVRLTALVDKKE 308
Cdd:pfam09787 132 RSKATLQSRIKDREAeIEKL--RNQLTSKSQSSSS-----QSELENRLHQLTETLIQKQTMLEALSTEKNSLVLQLERME 204

                  ...
gi 334188674  309 AQL 311
Cdd:pfam09787 205 QQI 207
 
Name Accession Description Interval E-value
Golgin_A5 pfam09787
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ...
150-311 7.98e-03

Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.


Pssm-ID: 462900 [Multi-domain]  Cd Length: 305  Bit Score: 37.43  E-value: 7.98e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188674  150 LSQEEIQRKVGQLENMSVKLEDMEKFALGTSSilcEMRQRVDDLVEETSRQKQRATENELELSRVRRDFESLKSyvtSLI 229
Cdd:pfam09787  58 LLREEIQKLRGQIQQLRTELQELEAQQQEEAE---SSREQLQELEEQLATERSARREAEAELERLQEELRYLEE---ELR 131
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334188674  230 SVRETLVSSEKQFQT-IERLfeRFIIVSKFAFMAScfrgyKQKLVAKTTQLESEKVQKEAEVQKLMEENVRLTALVDKKE 308
Cdd:pfam09787 132 RSKATLQSRIKDREAeIEKL--RNQLTSKSQSSSS-----QSELENRLHQLTETLIQKQTMLEALSTEKNSLVLQLERME 204

                  ...
gi 334188674  309 AQL 311
Cdd:pfam09787 205 QQI 207
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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