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Conserved domains on  [gi|334185336|ref|NP_001189888|]
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Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 11459648)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  30708253|10517866
SCOP:  3001345

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
214-313 2.92e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


:

Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.86  E-value: 2.92e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185336 214 FLRNQEPEKAYTEFKIALELaqslkDPtEEKKAARGLGASLQRQGKYREAIQYHsMVLAIskreseDSGITEAYGAIADC 293
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALEL-----DP-DNADALNNLGLLLLEQGRYDEAIALE-KALKL------DPNNAEALLNLAEL 68

                         90       100
                 ....*....|....*....|
gi 334185336 294 YTELGDLEKAGKFYDTYIAR 313
Cdd:COG3063   69 LLELGDYDEALAYLERALEL 88
 
Name Accession Description Interval E-value
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
214-313 2.92e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.86  E-value: 2.92e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185336 214 FLRNQEPEKAYTEFKIALELaqslkDPtEEKKAARGLGASLQRQGKYREAIQYHsMVLAIskreseDSGITEAYGAIADC 293
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALEL-----DP-DNADALNNLGLLLLEQGRYDEAIALE-KALKL------DPNNAEALLNLAEL 68

                         90       100
                 ....*....|....*....|
gi 334185336 294 YTELGDLEKAGKFYDTYIAR 313
Cdd:COG3063   69 LLELGDYDEALAYLERALEL 88
TPR_12 pfam13424
Tetratricopeptide repeat;
245-315 9.79e-07

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 45.84  E-value: 9.79e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 334185336  245 KAARGLGASLQRQGKYREAIQYHSMVLAISKRESEDS--GITEAYGAIADCYTELGDLEKAGKFYDTYIARLE 315
Cdd:pfam13424   4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDhpLTATTLLNLGRLYLELGRYEEALELLERALALAE 76
LcrH_SycD TIGR02552
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in ...
 239-313 5.53e-05

type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.


Pssm-ID: 274197 [Multi-domain]  Cd Length: 135  Bit Score: 42.28  E-value: 5.53e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 334185336  239 DPTEeKKAARGLGASLQRQGKYREAIQYHSMVLAISKRESedsgitEAYGAIADCYTELGDLEKAGKFYDTYIAR 313
Cdd:TIGR02552  47 DPYN-SRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDP------RPYFHAAECLLALGEPESALKALDLAIEI 114
 
Name Accession Description Interval E-value
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
214-313 2.92e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.86  E-value: 2.92e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185336 214 FLRNQEPEKAYTEFKIALELaqslkDPtEEKKAARGLGASLQRQGKYREAIQYHsMVLAIskreseDSGITEAYGAIADC 293
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALEL-----DP-DNADALNNLGLLLLEQGRYDEAIALE-KALKL------DPNNAEALLNLAEL 68

                         90       100
                 ....*....|....*....|
gi 334185336 294 YTELGDLEKAGKFYDTYIAR 313
Cdd:COG3063   69 LLELGDYDEALAYLERALEL 88
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
211-312 8.05e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 49.23  E-value: 8.05e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185336 211 GKTFLRNQEPEKAYTEFKIALELaqslkDPtEEKKAARGLGASLQRQGKYREAIQYHSMVLAIskreseDSGITEAYGAI 290
Cdd:COG0457   15 GLAYRRLGRYEEAIEDYEKALEL-----DP-DDAEALYNLGLAYLRLGRYEEALADYEQALEL------DPDDAEALNNL 82

                         90       100
                 ....*....|....*....|..
gi 334185336 291 ADCYTELGDLEKAGKFYDTYIA 312
Cdd:COG0457   83 GLALQALGRYEEALEDYDKALE 104
TPR_12 pfam13424
Tetratricopeptide repeat;
245-315 9.79e-07

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 45.84  E-value: 9.79e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 334185336  245 KAARGLGASLQRQGKYREAIQYHSMVLAISKRESEDS--GITEAYGAIADCYTELGDLEKAGKFYDTYIARLE 315
Cdd:pfam13424   4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDhpLTATTLLNLGRLYLELGRYEEALELLERALALAE 76
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 205-308 3.41e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 47.80  E-value: 3.41e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185336 205 ISKLKTGKTFLRNQEPEKAYTEFKIALELaqslkDPtEEKKAARGLGASLQRQGKYREAIQYHSMVLAISKRESedsgit 284
Cdd:COG2956    9 LGWYFKGLNYLLNGQPDKAIDLLEEALEL-----DP-ETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRA------ 76

                         90       100
                 ....*....|....*....|....
gi 334185336 285 EAYGAIADCYTELGDLEKAGKFYD 308
Cdd:COG2956   77 EALLELAQDYLKAGLLDRAEELLE 100
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 212-313 3.69e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 44.98  E-value: 3.69e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185336 212 KTFLRNQEPEKAYTEFKialELAQSLKDPTEEKKAARGLGASLQRQGKYREAIQYHsmvLAISKRESEDSGITEAYGAIA 291
Cdd:COG1729    1 KALLKAGDYDEAIAAFK---AFLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAF---EKLLKRYPDSPKAPDALLKLG 74

                         90       100
                 ....*....|....*....|..
gi 334185336 292 DCYTELGDLEKAGKFYDTYIAR 313
Cdd:COG1729   75 LSYLELGDYDKARATLEELIKK 96
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 208-313 4.25e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 45.57  E-value: 4.25e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185336 208 LKTGKTFLRNQEPEKAYTEFKIALELaqslkDPtEEKKAARGLGASLQRQGKYREAIQYHSMVLAISKRESEdsgiteAY 287
Cdd:COG4783    8 YALAQALLLAGDYDEAEALLEKALEL-----DP-DNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPE------AR 75

                         90       100
                 ....*....|....*....|....*.
gi 334185336 288 GAIADCYTELGDLEKAGKFYDTYIAR 313
Cdd:COG4783   76 LNLGLALLKAGDYDEALALLEKALKL 101
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
211-315 4.31e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 47.31  E-value: 4.31e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185336 211 GKTFLRNQEPEKAYTEFKIALELaqslkDPtEEKKAARGLGASLQRQGKYREAIQYHSMVLAIskreseDSGITEAYGAI 290
Cdd:COG0457   83 GLALQALGRYEEALEDYDKALEL-----DP-DDAEALYNLGLALLELGRYDEAIEAYERALEL------DPDDADALYNL 150

                         90       100
                 ....*....|....*....|....*
gi 334185336 291 ADCYTELGDLEKAGKFYDTYIARLE 315
Cdd:COG0457  151 GIALEKLGRYEEALELLEKLEAAAL 175
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
211-312 4.43e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 47.31  E-value: 4.43e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185336 211 GKTFLRNQEPEKAYTEFKIALELaqslkDPtEEKKAARGLGASLQRQGKYREAIQYHSMVLAIskreseDSGITEAYGAI 290
Cdd:COG0457   49 GLAYLRLGRYEEALADYEQALEL-----DP-DDAEALNNLGLALQALGRYEEALEDYDKALEL------DPDDAEALYNL 116

                         90       100
                 ....*....|....*....|..
gi 334185336 291 ADCYTELGDLEKAGKFYDTYIA 312
Cdd:COG0457  117 GLALLELGRYDEAIEAYERALE 138
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
246-312 1.12e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 45.77  E-value: 1.12e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 334185336 246 AARGLGASLQRQGKYREAIQYHSMVLAIskreseDSGITEAYGAIADCYTELGDLEKAGKFYDTYIA 312
Cdd:COG0457   10 AYNNLGLAYRRLGRYEEAIEDYEKALEL------DPDDAEALYNLGLAYLRLGRYEEALADYEQALE 70
TPR_12 pfam13424
Tetratricopeptide repeat;
211-276 1.25e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 42.76  E-value: 1.25e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 334185336  211 GKTFLRNQEPEKAYTEFKIALELAQSLKDPTEEKKAA--RGLGASLQRQGKYREAIQYHSMVLAISKR 276
Cdd:pfam13424  10 AAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATtlLNLGRLYLELGRYEEALELLERALALAEK 77
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 211-313 1.41e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 45.88  E-value: 1.41e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185336 211 GKTFLRNQEPEKAYTEFKIALELaqslkDPTEEKkAARGLGASLQRQGKYREAIQYHSMVLAIskreseDSGITEAYGAI 290
Cdd:COG2956  151 AELYLEQGDYDEAIEALEKALKL-----DPDCAR-ALLLLAELYLEQGDYEEAIAALERALEQ------DPDYLPALPRL 218

                         90       100
                 ....*....|....*....|...
gi 334185336 291 ADCYTELGDLEKAGKFYDTYIAR 313
Cdd:COG2956  219 AELYEKLGDPEEALELLRKALEL 241
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 211-313 2.10e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 43.64  E-value: 2.10e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185336 211 GKTFLRNQEPEKAYTEFKIALELaqslkDPtEEKKAARGLGASLQRQGKYREAIQYHSMVLAISKRESedsgitEAYGAI 290
Cdd:COG4783   45 GEILLQLGDLDEAIVLLHEALEL-----DP-DEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHP------EAYLRL 112

                         90       100
                 ....*....|....*....|...
gi 334185336 291 ADCYTELGDLEKAGKFYDTYIAR 313
Cdd:COG4783  113 ARAYRALGRPDEAIAALEKALEL 135
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 196-312 2.72e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 45.11  E-value: 2.72e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185336 196 IVEPKKQELISKLKTGKTFLRNQEPEKAYTEFKIALELAQslkdptEEKKAARGLGASLQRQGKYREAIQYHSMVLAISK 275
Cdd:COG2956   68 LLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDP------DDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGP 141

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 334185336 276 RESedsgitEAYGAIADCYTELGDLEKAGKFYDTYIA 312
Cdd:COG2956  142 ENA------HAYCELAELYLEQGDYDEAIEALEKALK 172
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 132-312 5.48e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 44.60  E-value: 5.48e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185336 132 LLLVALIGATVGGLLARQRKGELQRLNEQLRQINAALRRQAKIEsYAPSlsYAPVGARIpdseiivepkkqelisklktG 211
Cdd:COG3914   63 AAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALA-LNPD--NAEALFNL--------------------G 119

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185336 212 KTFLRNQEPEKAYTEFKIALELAQSLKDpteekkAARGLGASLQRQGKYREAIQYHSMVLAIskreseDSGITEAYGAIA 291
Cdd:COG3914  120 NLLLALGRLEEALAALRRALALNPDFAE------AYLNLGEALRRLGRLEEAIAALRRALEL------DPDNAEALNNLG 187

                        170       180
                 ....*....|....*....|.
gi 334185336 292 DCYTELGDLEKAGKFYDTYIA 312
Cdd:COG3914  188 NALQDLGRLEEAIAAYRRALE 208
LcrH_SycD TIGR02552
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in ...
 239-313 5.53e-05

type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.


Pssm-ID: 274197 [Multi-domain]  Cd Length: 135  Bit Score: 42.28  E-value: 5.53e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 334185336  239 DPTEeKKAARGLGASLQRQGKYREAIQYHSMVLAISKRESedsgitEAYGAIADCYTELGDLEKAGKFYDTYIAR 313
Cdd:TIGR02552  47 DPYN-SRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDP------RPYFHAAECLLALGEPESALKALDLAIEI 114
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 211-317 1.00e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 41.53  E-value: 1.00e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185336 211 GKTFLRNQEPEKAYTEFKIALELaqslkDPtEEKKAARGLGASLQRQGKYREAIQYHSMVLAIskreseDSGITEAYGAI 290
Cdd:COG4235   24 GRAYLRLGRYDEALAAYEKALRL-----DP-DNADALLDLAEALLAAGDTEEAEELLERALAL------DPDNPEALYLL 91

                         90       100
                 ....*....|....*....|....*..
gi 334185336 291 ADCYTELGDLEKAGKFYDTYIARLETD 317
Cdd:COG4235   92 GLAAFQQGDYAEAIAAWQKLLALLPAD 118
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 154-313 2.13e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.10  E-value: 2.13e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185336 154 LQRLNEQLRQINAALRRQAKIESYAPSLSYAPVGARIPDSEIIVEPKKQELISKLKTGKTFLRNQEPEKAYTEFKIALEL 233
Cdd:COG5010    4 LEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185336 234 aqslkDPtEEKKAARGLGASLQRQGKYREAIQYHSMVLAIskreseDSGITEAYGAIADCYTELGDLEKAGKFYDTYIAR 313
Cdd:COG5010   84 -----DP-NNPELYYNLALLYSRSGDKDEAKEYYEKALAL------SPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 166-312 4.10e-03

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 38.82  E-value: 4.10e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185336 166 AALRRQAKIESYAPSLSYAPVGARIPDSEIIVEPKKQELISKLkTGKTFLRNQEPEKAYTEFKIALELAQSLKDPTEEKK 245
Cdd:COG3914    1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGL-ALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAA 79

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 334185336 246 AARGLGASLQRQGKYREAIQYHSMVLAIskreseDSGITEAYGAIADCYTELGDLEKAGKFYDTYIA 312
Cdd:COG3914   80 LLELAALLLQALGRYEEALALYRRALAL------NPDNAEALFNLGNLLLALGRLEEALAALRRALA 140
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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