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Conserved domains on  [gi|334184121|ref|NP_001189503|]
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alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]

Protein Classification

CPBP family intramembrane glutamic endopeptidase( domain architecture ID 15525215)

CPBP (CAAX proteases and bacteriocin-processing enzymes) family intramembrane protease similar to Saccharomyces cerevisiae Rce1, a type II CAAX prenyl protease that processes all farnesylated and geranylgeranylated CAAX proteins. It is an integral membrane endoprotease that belongs to the glutamate IMPs, sharing a conserved sequence motif EExxxR.

EC:  3.4.-.-
Gene Ontology:  GO:0071586|GO:0070007|GO:0016020
PubMed:  24291792

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
PLN02511 super family cl27029
hydrolase
145-460 1.09e-57

hydrolase


The actual alignment was detected with superfamily member PLN02511:

Pssm-ID: 215282 [Multi-domain]  Cd Length: 388  Bit Score: 205.40  E-value: 1.09e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  145 RHFVTLDSGKIVRDGAVTdektpleYQRVCITMEDGGVVSLDWPANLDirEERGLDTTV-VFIPGTPEGSMEEGVRSFVC 223
Cdd:PLN02511   53 RHVETIFASFFRSLPAVR-------YRRECLRTPDGGAVALDWVSGDD--RALPADAPVlILLPGLTGGSDDSYVRHMLL 123
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  224 EALRRGVFPVVMNPRGCAGSPLTTPRLFTAGDSDDISTALRFLSKTRPWTTLTAVGRGYGANMLTKYLAEAGERTPLTAA 303
Cdd:PLN02511  124 RARSKGWRVVVFNSRGCADSPVTTPQFYSASFTGDLRQVVDHVAGRYPSANLYAAGWSLGANILVNYLGEEGENCPLSGA 203
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  304 VCIDNPFDL---EEITRtSPYSTSLDQQLTRGLVEILLANKELFQGRAKAFDVGKALCSKSVREFDKALSMVTYGCESIE 380
Cdd:PLN02511  204 VSLCNPFDLviaDEDFH-KGFNNVYDKALAKALRKIFAKHALLFEGLGGEYNIPLVANAKTVRDFDDGLTRVSFGFKSVD 282
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  381 DFYSSCATREVIGEVKVPLLFIQ--NDDVVPPYTIPRSSIAENPFTSLLLCSSSPNL--IDGRTVAVS--WCQDLASEWL 454
Cdd:PLN02511  283 AYYSNSSSSDSIKHVRVPLLCIQaaNDPIAPARGIPREDIKANPNCLLIVTPSGGHLgwVAGPEAPFGapWTDPVVMEFL 362

                  ....*.
gi 334184121  455 TAVELG 460
Cdd:PLN02511  363 EALEEG 368
YdiL COG1266
Membrane protease YdiL, CAAX protease family [Posttranslational modification, protein turnover, ...
1647-1742 7.03e-12

Membrane protease YdiL, CAAX protease family [Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 440877 [Multi-domain]  Cd Length: 97  Bit Score: 63.27  E-value: 7.03e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121 1647 FLLLIIRGFTAATFVVLVEELLFRSWMPAEIAIDLGYHQSIIITGLIFAL--FQRSLRSIPGFwLLSLALTWARERSqGN 1724
Cdd:COG1266     1 LLWLLLFLLVVVILAPIAEELLFRGYLLGRLRRRFGPWLAILLSSLLFGLlhLPNLLGFLPAF-LLGLVLGLLYLRT-GS 78
                          90
                  ....*....|....*...
gi 334184121 1725 LIVPIGLRAGIIASSFIL 1742
Cdd:COG1266    79 LWVPILLHALNNLLALLL 96
MSCRAMM_ClfA super family cl41352
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
670-974 3.54e-10

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


The actual alignment was detected with superfamily member NF033609:

Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 65.32  E-value: 3.54e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  670 SSAIGQSDSYSPDPKDKSDGLVSGSDETISGSDNSPGGVELEHSPSKVSQRNSDSGKSQPVDNDQD-----DSPGNHESH 744
Cdd:NF033609  610 SDSASDSDSASDSDSASDSDSASDSDSASDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDsdsdsDSDSDSDSD 689
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  745 TNEKTSAADDSEMASEAKSDSANQGPIGAEAVTNNDDKVEQGSGVATHQGQVETSKNDEKGAPIANEKSSVADGFEKASD 824
Cdd:NF033609  690 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 769
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  825 AKNDSTNPQPVGADDITSDGDKVDQGVVLAQQQRKDETSKSD-ENAKQSATDQNKVTSTDNEGDAGKSSASQPVEKDESN 903
Cdd:NF033609  770 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDsDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 849
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  904 DQSKETKVMQPVSDQTKPA---IQEPNQPN--FNVSQAFEAL--------TGMDDSTQVAVnsVFGVLENMISQLDEEKK 970
Cdd:NF033609  850 SDSDSDSESDSNSDSESGSnnnVVPPNSPKngTNASNKNEAKdskeplpdTGSEDEANTSL--IWGLLASLGSLLLFRRK 927

                  ....
gi 334184121  971 EGNE 974
Cdd:NF033609  928 KENK 931
 
Name Accession Description Interval E-value
PLN02511 PLN02511
hydrolase
145-460 1.09e-57

hydrolase


Pssm-ID: 215282 [Multi-domain]  Cd Length: 388  Bit Score: 205.40  E-value: 1.09e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  145 RHFVTLDSGKIVRDGAVTdektpleYQRVCITMEDGGVVSLDWPANLDirEERGLDTTV-VFIPGTPEGSMEEGVRSFVC 223
Cdd:PLN02511   53 RHVETIFASFFRSLPAVR-------YRRECLRTPDGGAVALDWVSGDD--RALPADAPVlILLPGLTGGSDDSYVRHMLL 123
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  224 EALRRGVFPVVMNPRGCAGSPLTTPRLFTAGDSDDISTALRFLSKTRPWTTLTAVGRGYGANMLTKYLAEAGERTPLTAA 303
Cdd:PLN02511  124 RARSKGWRVVVFNSRGCADSPVTTPQFYSASFTGDLRQVVDHVAGRYPSANLYAAGWSLGANILVNYLGEEGENCPLSGA 203
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  304 VCIDNPFDL---EEITRtSPYSTSLDQQLTRGLVEILLANKELFQGRAKAFDVGKALCSKSVREFDKALSMVTYGCESIE 380
Cdd:PLN02511  204 VSLCNPFDLviaDEDFH-KGFNNVYDKALAKALRKIFAKHALLFEGLGGEYNIPLVANAKTVRDFDDGLTRVSFGFKSVD 282
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  381 DFYSSCATREVIGEVKVPLLFIQ--NDDVVPPYTIPRSSIAENPFTSLLLCSSSPNL--IDGRTVAVS--WCQDLASEWL 454
Cdd:PLN02511  283 AYYSNSSSSDSIKHVRVPLLCIQaaNDPIAPARGIPREDIKANPNCLLIVTPSGGHLgwVAGPEAPFGapWTDPVVMEFL 362

                  ....*.
gi 334184121  455 TAVELG 460
Cdd:PLN02511  363 EALEEG 368
YheT COG0429
Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only];
165-428 2.24e-35

Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only];


Pssm-ID: 440198 [Multi-domain]  Cd Length: 323  Bit Score: 138.35  E-value: 2.24e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  165 KTPLEYQRVCITMEDGGVVSLDWpaNLDIREERGLdttVVFIPGTpEGSMEEG-VRSFVCEALRRGVFPVVMNPRGCAGS 243
Cdd:COG0429    31 RPALPYRRERLELPDGDFVDLDW--SDPPAPSKPL---VVLLHGL-EGSSDSHyARGLARALYARGWDVVRLNFRGCGGE 104
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  244 PLTTPRLFTAGDSDDISTALRFLSKTRPWTTLTAVgrGY--GANMLTKYLAEAGERTP-LTAAVCIDNPFDLEEITRT-- 318
Cdd:COG0429   105 PNLLPRLYHSGDTEDLVWVLAHLRARYPYAPLYAV--GFslGGNLLLKYLGEQGDDAPpLKAAVAVSPPLDLAASADRle 182
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  319 SPYSTSLDQQLTRGLVEILLANKELFQGrakAFDVGKALCSKSVREFDKAlsmVT---YGCESIEDFYSSCATREVIGEV 395
Cdd:COG0429   183 RGFNRLYQRYFLRSLKRKLRRKLALFPG---LIDLEALKRIRTLREFDDA---YTaplHGFKDAEDYYQRASALPFLPQI 256
                         250       260       270
                  ....*....|....*....|....*....|....*
gi 334184121  396 KVPLLFI--QNDDVVPPYTIPRSSiAENPFTSLLL 428
Cdd:COG0429   257 RVPTLILnaADDPFLPPECLPEAA-ELNPNVTLEL 290
YdiL COG1266
Membrane protease YdiL, CAAX protease family [Posttranslational modification, protein turnover, ...
1647-1742 7.03e-12

Membrane protease YdiL, CAAX protease family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440877 [Multi-domain]  Cd Length: 97  Bit Score: 63.27  E-value: 7.03e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121 1647 FLLLIIRGFTAATFVVLVEELLFRSWMPAEIAIDLGYHQSIIITGLIFAL--FQRSLRSIPGFwLLSLALTWARERSqGN 1724
Cdd:COG1266     1 LLWLLLFLLVVVILAPIAEELLFRGYLLGRLRRRFGPWLAILLSSLLFGLlhLPNLLGFLPAF-LLGLVLGLLYLRT-GS 78
                          90
                  ....*....|....*...
gi 334184121 1725 LIVPIGLRAGIIASSFIL 1742
Cdd:COG1266    79 LWVPILLHALNNLLALLL 96
Rce1-like pfam02517
Type II CAAX prenyl endopeptidase Rce1-like; This family (also known as the ABI (abortive ...
1648-1735 9.40e-11

Type II CAAX prenyl endopeptidase Rce1-like; This family (also known as the ABI (abortive infection) family) contains putative IMPs and has homologs in all three domains of life, including Rce1 from S. cerevisiae. Rce1 is a type II CAAX prenyl protease that processes all farnesylated and geranylgeranylated CAAX proteins. It is an integral membrane endoprotease localized to the endoplasmic reticulum that mediates the cleavage of the carboxyl-terminal three amino acids from CaaX proteins. It is involved in processing the Ras family of small GTPases, the gamma-subunit of heterotrimeric GTPases, nuclear lamins, and protein kinases and phosphatases. Three residues of S. cerevisiae Rce1 -E156, H194 and H248- are critical for catalysis. The structure of Rce1 from the archaea Methanococcus (MmRce1) suggests that this group of proteins represents a novel IMP (intramembrane protease) family, the glutamate IMPs. There is a conserved sequence motif EExxxR.


Pssm-ID: 460578 [Multi-domain]  Cd Length: 92  Bit Score: 59.87  E-value: 9.40e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  1648 LLLIIRGFTAATFVVLVEELLFRSWMPAEIAIDLGYHQSIIITGLIFAL--FQRSLRSIPGFWLLSLALTWARERSqGNL 1725
Cdd:pfam02517    1 LLLLLLLLLLALLAPIGEELLFRGYLLPRLRRRLWPVLAILISSLLFGLahLPNGPQLFLLAFLLGLILGYLYLRT-GSL 79
                           90
                   ....*....|
gi 334184121  1726 IVPIGLRAGI 1735
Cdd:pfam02517   80 WAAILLHALN 89
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
670-974 3.54e-10

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 65.32  E-value: 3.54e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  670 SSAIGQSDSYSPDPKDKSDGLVSGSDETISGSDNSPGGVELEHSPSKVSQRNSDSGKSQPVDNDQD-----DSPGNHESH 744
Cdd:NF033609  610 SDSASDSDSASDSDSASDSDSASDSDSASDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDsdsdsDSDSDSDSD 689
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  745 TNEKTSAADDSEMASEAKSDSANQGPIGAEAVTNNDDKVEQGSGVATHQGQVETSKNDEKGAPIANEKSSVADGFEKASD 824
Cdd:NF033609  690 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 769
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  825 AKNDSTNPQPVGADDITSDGDKVDQGVVLAQQQRKDETSKSD-ENAKQSATDQNKVTSTDNEGDAGKSSASQPVEKDESN 903
Cdd:NF033609  770 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDsDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 849
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  904 DQSKETKVMQPVSDQTKPA---IQEPNQPN--FNVSQAFEAL--------TGMDDSTQVAVnsVFGVLENMISQLDEEKK 970
Cdd:NF033609  850 SDSDSDSESDSNSDSESGSnnnVVPPNSPKngTNASNKNEAKdskeplpdTGSEDEANTSL--IWGLLASLGSLLLFRRK 927

                  ....
gi 334184121  971 EGNE 974
Cdd:NF033609  928 KENK 931
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
657-985 4.61e-09

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 61.85  E-value: 4.61e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  657 PGLKKAEEEKKETSSAIGQSDSYSPDPKDKSDGLVSGSDETISGSDNSPGGVELEHSPSKVSQRNSDSGKSQPVDNDQD- 735
Cdd:NF033609  565 PGSDSGSDSSNSDSGSDSGSDSTSDSGSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSDs 644
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  736 DSPGNHESHTNEKTSAADDSEMASEAKSDSANQGPIGAEAVTNNDDKVEQGSGVATHQGQVETSKNDEKGAPIANEKSSV 815
Cdd:NF033609  645 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 724
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  816 ADGFEKASDAKNDSTNPQPVGADDITSDGDKVDQGVVLAQQQRKDETSKSDENA-KQSATDQNKVTSTDNEGDAGKSSAS 894
Cdd:NF033609  725 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSdSDSDSDSDSDSDSDSDSDSDSDSDS 804
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  895 QPVEKDESNDQSKETKVMQPVSDQTKPAIQEPNQPNFNVSQAFEALTGMDDS-TQVAVNSVFGVLENMISQldEEKKEGN 973
Cdd:NF033609  805 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSeSDSNSDSESGSNNNVVPP--NSPKNGT 882
                         330
                  ....*....|..
gi 334184121  974 EVSDEKNLKDEK 985
Cdd:NF033609  883 NASNKNEAKDSK 894
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
676-1006 9.88e-09

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 60.69  E-value: 9.88e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  676 SDSYSpDPKDKSDGLVSGSDETI-SGSDNSPGGVELEHSPSkVSQRNSDSGKSQPVDNDQD-DSPGNHESHTNEKTSAAD 753
Cdd:NF033609  567 SDSGS-DSSNSDSGSDSGSDSTSdSGSDSASDSDSASDSDS-ASDSDSASDSDSASDSDSAsDSDSASDSDSASDSDSDS 644
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  754 DSEMASEAKSDSANQGPIGAEAVTNNDDKVEQGSGVATHQGQVETSKNDEKGAPIANEKSSVADGFEKASDAKNDSTNPQ 833
Cdd:NF033609  645 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 724
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  834 PVGAD-DITSDGDKvDQGVVLAQQQRKDETSKSDENA---KQSATDQNKVTSTDNEGDAGKSSASQPVEKDESNDQSKET 909
Cdd:NF033609  725 DSDSDsDSDSDSDS-DSDSDSDSDSDSDSDSDSDSDSdsdSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 803
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  910 KVMQPVSDQTKPAIQEPNQPNFNVSQA---FEALTGMDDSTQVAVNSVFGVLENMISQLDEEKKEGNEV---SDEKNLKD 983
Cdd:NF033609  804 SDSDSDSDSDSDSDSDSDSDSDSDSDSdsdSDSDSDSDSDSDSDSDSDSDSDSESDSNSDSESGSNNNVvppNSPKNGTN 883
                         330       340
                  ....*....|....*....|...
gi 334184121  984 EKNLKDAKNvtnevvspSEEEIP 1006
Cdd:NF033609  884 ASNKNEAKD--------SKEPLP 898
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
701-917 1.96e-07

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 56.46  E-value: 1.96e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  701 SDNSPGgvelehSPSKVSQRNSDSGKSQPVDNDQDDSpgnheSHTNEKTSAADDSEMASEAKSDSANQGPIGAEAVTNND 780
Cdd:NF033609  561 SDSDPG------SDSGSDSSNSDSGSDSGSDSTSDSG-----SDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSD 629
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  781 DKVEQGSGVATHQGQVETSKNDEKGAPIANEKSSVADGFEKASDAKNDSTNPQPVGAD-DITSDGDKvDQGVVLAQQQRK 859
Cdd:NF033609  630 SASDSDSASDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDsDSDSDSDS-DSDSDSDSDSDS 708
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 334184121  860 DETSKSDENakqSATDQNKVTSTDNEGDAGKSSASQPVEKDESNDQSKETKVMQPVSD 917
Cdd:NF033609  709 DSDSDSDSD---SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 763
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
717-1061 3.20e-07

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 55.69  E-value: 3.20e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  717 VSQRNSDSGKSQPVDNDQDDSPGNHESHTNEKTSAADDSemASEAKSDSANQGPIGAEAVTNNDDKVEQGSGVATHQGQV 796
Cdd:NF033609  544 VPEQPDEPGEIEPIPEDSDSDPGSDSGSDSSNSDSGSDS--GSDSTSDSGSDSASDSDSASDSDSASDSDSASDSDSASD 621
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  797 ETSKNDEKGAPIANEKSSVADGFEKASDAKNDSTNPQPVGAD-DITSDGDKvDQGVVLAQQQRKDETSKSDENakqSATD 875
Cdd:NF033609  622 SDSASDSDSASDSDSASDSDSDSDSDSDSDSDSDSDSDSDSDsDSDSDSDS-DSDSDSDSDSDSDSDSDSDSD---SDSD 697
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  876 QNKVTSTDNEGDAGKSSASQPVEKDESNDQSKETKVMQPVSDQTKPAIQEPNQPNFNVSQafealTGMDDSTQVAVNSVF 955
Cdd:NF033609  698 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD-----SDSDSDSDSDSDSDS 772
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  956 GVLENMISQLDEEKKEGNEVSDEKNLKDEKNLKDAKNVTNEVVSPSEEEIPYKRETKSLMPSAKSRDP-ACSVSETEKCS 1034
Cdd:NF033609  773 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSdSDSDSDSDSDS 852
                         330       340
                  ....*....|....*....|....*..
gi 334184121 1035 DNDKVTGVVIEKQLGRDEFVIGKHSPK 1061
Cdd:NF033609  853 DSDSESDSNSDSESGSNNNVVPPNSPK 879
MDN1 COG5271
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ...
682-1011 6.38e-07

Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];


Pssm-ID: 444083 [Multi-domain]  Cd Length: 1028  Bit Score: 54.64  E-value: 6.38e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  682 DPKDKSDGLVSGSDETISGSDNSPGGVELEhsPSKVSQRNSDSGKSQPVDNDQDDSPGNHESHTNEKTSAADDSEMASEA 761
Cdd:COG5271   614 EADADADGAADEEETEEEAAEDEAAEPETD--ASEAADEDADAETEAEASADESEEEAEDESETSSEDAEEDADAAAAEA 691
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  762 KSDSANQGPIGAEAVTNNDDKVEQGSGVAthqgQVETSKNDEKGAPIANEKSSVADGFEKASDAKNDSTNPQPVGADDIT 841
Cdd:COG5271   692 SDDEEETEEADEDAETASEEADAEEADTE----ADGTAEEAEEAAEEAESADEEAASLPDEADAEEEAEEAEEAEEDDAD 767
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  842 SDGDKVDQGVVLAQQQRKDETSKSDENAKQSATDQNKVTSTDNEGDA--GKSSASQPVEKDESNDQSKETKVMQPVSDQT 919
Cdd:COG5271   768 GLEEALEEEKADAEEAATDEEAEAAAEEKEKVADEDQDTDEDALLDEaeADEEEDLDGEDEETADEALEDIEAGIAEDDE 847
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  920 KPAIQEPNQ------PNFNVSQAFEALTGMDDSTQVAVNSVFGVLENMISQLDEEKKEGNEVSDEKNLKDEKNLKDAKNV 993
Cdd:COG5271   848 EDDDAAAAKdvdadlDLDADLAADEHEAEEAQEAETDADADADAGEADSSGESSAAAEDDDAAEDADSDDGANDEDDDDD 927
                         330
                  ....*....|....*...
gi 334184121  994 TNEVVSPSEEEIPYKRET 1011
Cdd:COG5271   928 AEEERKDAEEDELGAAED 945
PRK08581 PRK08581
amidase domain-containing protein;
706-1008 2.48e-04

amidase domain-containing protein;


Pssm-ID: 236304 [Multi-domain]  Cd Length: 619  Bit Score: 45.93  E-value: 2.48e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  706 GGVELEHSPSKVSQRNSDSGKSQPVDNDQDDSPGNHESHTNEKTSAADDSEMASEAKSDSanqgpigaeavTNNDDKVEQ 785
Cdd:PRK08581   25 AYADDPQKDSTAKTTSHDSKKSNDDETSKDTSSKDTDKADNNNTSNQDNNDKKFSTIDSS-----------TSDSNNIID 93
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  786 GSGVATHQGQVETSKNDEKGAPIANEKSSVADGFEKASDAKnDSTNPQpvgaddiTSDGDKVDQGVVLAQQQRKDETSKS 865
Cdd:PRK08581   94 FIYKNLPQTNINQLLTKNKYDDNYSLTTLIQNLFNLNSDIS-DYEQPR-------NSEKSTNDSNKNSDSSIKNDTDTQS 165
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  866 DENAKqsaTDQNKVTStdnegdagkSSASQPvekDESNDQSKetkvmqpvsdqtkpaIQEPNQPNFNVSQAFEALTGMDD 945
Cdd:PRK08581  166 SKQDK---ADNQKAPS---------SNNTKP---STSNKQPN---------------SPKPTQPNQSNSQPASDDTANQK 215
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 334184121  946 STQVAVNSVF-GVLENMISQLDEEKKEGNEVSDEKNLKDEKNLKDAKNVTnevvSPSEEEIPYK 1008
Cdd:PRK08581  216 SSSKDNQSMSdSALDSILDQYSEDAKKTQKDYASQSKKDKTETSNTKNPQ----LPTQDELKHK 275
 
Name Accession Description Interval E-value
PLN02511 PLN02511
hydrolase
145-460 1.09e-57

hydrolase


Pssm-ID: 215282 [Multi-domain]  Cd Length: 388  Bit Score: 205.40  E-value: 1.09e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  145 RHFVTLDSGKIVRDGAVTdektpleYQRVCITMEDGGVVSLDWPANLDirEERGLDTTV-VFIPGTPEGSMEEGVRSFVC 223
Cdd:PLN02511   53 RHVETIFASFFRSLPAVR-------YRRECLRTPDGGAVALDWVSGDD--RALPADAPVlILLPGLTGGSDDSYVRHMLL 123
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  224 EALRRGVFPVVMNPRGCAGSPLTTPRLFTAGDSDDISTALRFLSKTRPWTTLTAVGRGYGANMLTKYLAEAGERTPLTAA 303
Cdd:PLN02511  124 RARSKGWRVVVFNSRGCADSPVTTPQFYSASFTGDLRQVVDHVAGRYPSANLYAAGWSLGANILVNYLGEEGENCPLSGA 203
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  304 VCIDNPFDL---EEITRtSPYSTSLDQQLTRGLVEILLANKELFQGRAKAFDVGKALCSKSVREFDKALSMVTYGCESIE 380
Cdd:PLN02511  204 VSLCNPFDLviaDEDFH-KGFNNVYDKALAKALRKIFAKHALLFEGLGGEYNIPLVANAKTVRDFDDGLTRVSFGFKSVD 282
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  381 DFYSSCATREVIGEVKVPLLFIQ--NDDVVPPYTIPRSSIAENPFTSLLLCSSSPNL--IDGRTVAVS--WCQDLASEWL 454
Cdd:PLN02511  283 AYYSNSSSSDSIKHVRVPLLCIQaaNDPIAPARGIPREDIKANPNCLLIVTPSGGHLgwVAGPEAPFGapWTDPVVMEFL 362

                  ....*.
gi 334184121  455 TAVELG 460
Cdd:PLN02511  363 EALEEG 368
YheT COG0429
Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only];
165-428 2.24e-35

Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only];


Pssm-ID: 440198 [Multi-domain]  Cd Length: 323  Bit Score: 138.35  E-value: 2.24e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  165 KTPLEYQRVCITMEDGGVVSLDWpaNLDIREERGLdttVVFIPGTpEGSMEEG-VRSFVCEALRRGVFPVVMNPRGCAGS 243
Cdd:COG0429    31 RPALPYRRERLELPDGDFVDLDW--SDPPAPSKPL---VVLLHGL-EGSSDSHyARGLARALYARGWDVVRLNFRGCGGE 104
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  244 PLTTPRLFTAGDSDDISTALRFLSKTRPWTTLTAVgrGY--GANMLTKYLAEAGERTP-LTAAVCIDNPFDLEEITRT-- 318
Cdd:COG0429   105 PNLLPRLYHSGDTEDLVWVLAHLRARYPYAPLYAV--GFslGGNLLLKYLGEQGDDAPpLKAAVAVSPPLDLAASADRle 182
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  319 SPYSTSLDQQLTRGLVEILLANKELFQGrakAFDVGKALCSKSVREFDKAlsmVT---YGCESIEDFYSSCATREVIGEV 395
Cdd:COG0429   183 RGFNRLYQRYFLRSLKRKLRRKLALFPG---LIDLEALKRIRTLREFDDA---YTaplHGFKDAEDYYQRASALPFLPQI 256
                         250       260       270
                  ....*....|....*....|....*....|....*
gi 334184121  396 KVPLLFI--QNDDVVPPYTIPRSSiAENPFTSLLL 428
Cdd:COG0429   257 RVPTLILnaADDPFLPPECLPEAA-ELNPNVTLEL 290
PRK10985 PRK10985
putative hydrolase; Provisional
227-406 5.47e-17

putative hydrolase; Provisional


Pssm-ID: 182883  Cd Length: 324  Bit Score: 84.24  E-value: 5.47e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  227 RRGVFPVVMNPRGCAGSPLTTPRLFTAGDSDDISTALRFLSKTRPWTTLTAVGRGYGANMLTKYLAEAGERTPLTAAVCI 306
Cdd:PRK10985   85 KRGWLGVVMHFRGCSGEPNRLHRIYHSGETEDARFFLRWLQREFGHVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIV 164
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  307 DNPFDLEeitrtsPYSTSLDQQLTRGLVEILL------ANKELFQGRaKAFDVG----KALcsKSVREFDKALSMVTYGC 376
Cdd:PRK10985  165 SAPLMLE------ACSYRMEQGFSRVYQRYLLnllkanAARKLAAYP-GTLPINlaqlKSV--RRLREFDDLITARIHGF 235
                         170       180       190
                  ....*....|....*....|....*....|
gi 334184121  377 ESIEDFYSSCATREVIGEVKVPLLFIQNDD 406
Cdd:PRK10985  236 ADAIDYYRQCSALPLLNQIRKPTLIIHAKD 265
YdiL COG1266
Membrane protease YdiL, CAAX protease family [Posttranslational modification, protein turnover, ...
1647-1742 7.03e-12

Membrane protease YdiL, CAAX protease family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440877 [Multi-domain]  Cd Length: 97  Bit Score: 63.27  E-value: 7.03e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121 1647 FLLLIIRGFTAATFVVLVEELLFRSWMPAEIAIDLGYHQSIIITGLIFAL--FQRSLRSIPGFwLLSLALTWARERSqGN 1724
Cdd:COG1266     1 LLWLLLFLLVVVILAPIAEELLFRGYLLGRLRRRFGPWLAILLSSLLFGLlhLPNLLGFLPAF-LLGLVLGLLYLRT-GS 78
                          90
                  ....*....|....*...
gi 334184121 1725 LIVPIGLRAGIIASSFIL 1742
Cdd:COG1266    79 LWVPILLHALNNLLALLL 96
Rce1-like pfam02517
Type II CAAX prenyl endopeptidase Rce1-like; This family (also known as the ABI (abortive ...
1648-1735 9.40e-11

Type II CAAX prenyl endopeptidase Rce1-like; This family (also known as the ABI (abortive infection) family) contains putative IMPs and has homologs in all three domains of life, including Rce1 from S. cerevisiae. Rce1 is a type II CAAX prenyl protease that processes all farnesylated and geranylgeranylated CAAX proteins. It is an integral membrane endoprotease localized to the endoplasmic reticulum that mediates the cleavage of the carboxyl-terminal three amino acids from CaaX proteins. It is involved in processing the Ras family of small GTPases, the gamma-subunit of heterotrimeric GTPases, nuclear lamins, and protein kinases and phosphatases. Three residues of S. cerevisiae Rce1 -E156, H194 and H248- are critical for catalysis. The structure of Rce1 from the archaea Methanococcus (MmRce1) suggests that this group of proteins represents a novel IMP (intramembrane protease) family, the glutamate IMPs. There is a conserved sequence motif EExxxR.


Pssm-ID: 460578 [Multi-domain]  Cd Length: 92  Bit Score: 59.87  E-value: 9.40e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  1648 LLLIIRGFTAATFVVLVEELLFRSWMPAEIAIDLGYHQSIIITGLIFAL--FQRSLRSIPGFWLLSLALTWARERSqGNL 1725
Cdd:pfam02517    1 LLLLLLLLLLALLAPIGEELLFRGYLLPRLRRRLWPVLAILISSLLFGLahLPNGPQLFLLAFLLGLILGYLYLRT-GSL 79
                           90
                   ....*....|
gi 334184121  1726 IVPIGLRAGI 1735
Cdd:pfam02517   80 WAAILLHALN 89
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
670-974 3.54e-10

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 65.32  E-value: 3.54e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  670 SSAIGQSDSYSPDPKDKSDGLVSGSDETISGSDNSPGGVELEHSPSKVSQRNSDSGKSQPVDNDQD-----DSPGNHESH 744
Cdd:NF033609  610 SDSASDSDSASDSDSASDSDSASDSDSASDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDsdsdsDSDSDSDSD 689
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  745 TNEKTSAADDSEMASEAKSDSANQGPIGAEAVTNNDDKVEQGSGVATHQGQVETSKNDEKGAPIANEKSSVADGFEKASD 824
Cdd:NF033609  690 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 769
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  825 AKNDSTNPQPVGADDITSDGDKVDQGVVLAQQQRKDETSKSD-ENAKQSATDQNKVTSTDNEGDAGKSSASQPVEKDESN 903
Cdd:NF033609  770 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDsDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 849
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  904 DQSKETKVMQPVSDQTKPA---IQEPNQPN--FNVSQAFEAL--------TGMDDSTQVAVnsVFGVLENMISQLDEEKK 970
Cdd:NF033609  850 SDSDSDSESDSNSDSESGSnnnVVPPNSPKngTNASNKNEAKdskeplpdTGSEDEANTSL--IWGLLASLGSLLLFRRK 927

                  ....
gi 334184121  971 EGNE 974
Cdd:NF033609  928 KENK 931
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
657-985 4.61e-09

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 61.85  E-value: 4.61e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  657 PGLKKAEEEKKETSSAIGQSDSYSPDPKDKSDGLVSGSDETISGSDNSPGGVELEHSPSKVSQRNSDSGKSQPVDNDQD- 735
Cdd:NF033609  565 PGSDSGSDSSNSDSGSDSGSDSTSDSGSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSDs 644
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  736 DSPGNHESHTNEKTSAADDSEMASEAKSDSANQGPIGAEAVTNNDDKVEQGSGVATHQGQVETSKNDEKGAPIANEKSSV 815
Cdd:NF033609  645 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 724
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  816 ADGFEKASDAKNDSTNPQPVGADDITSDGDKVDQGVVLAQQQRKDETSKSDENA-KQSATDQNKVTSTDNEGDAGKSSAS 894
Cdd:NF033609  725 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSdSDSDSDSDSDSDSDSDSDSDSDSDS 804
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  895 QPVEKDESNDQSKETKVMQPVSDQTKPAIQEPNQPNFNVSQAFEALTGMDDS-TQVAVNSVFGVLENMISQldEEKKEGN 973
Cdd:NF033609  805 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSeSDSNSDSESGSNNNVVPP--NSPKNGT 882
                         330
                  ....*....|..
gi 334184121  974 EVSDEKNLKDEK 985
Cdd:NF033609  883 NASNKNEAKDSK 894
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
676-1006 9.88e-09

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 60.69  E-value: 9.88e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  676 SDSYSpDPKDKSDGLVSGSDETI-SGSDNSPGGVELEHSPSkVSQRNSDSGKSQPVDNDQD-DSPGNHESHTNEKTSAAD 753
Cdd:NF033609  567 SDSGS-DSSNSDSGSDSGSDSTSdSGSDSASDSDSASDSDS-ASDSDSASDSDSASDSDSAsDSDSASDSDSASDSDSDS 644
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  754 DSEMASEAKSDSANQGPIGAEAVTNNDDKVEQGSGVATHQGQVETSKNDEKGAPIANEKSSVADGFEKASDAKNDSTNPQ 833
Cdd:NF033609  645 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 724
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  834 PVGAD-DITSDGDKvDQGVVLAQQQRKDETSKSDENA---KQSATDQNKVTSTDNEGDAGKSSASQPVEKDESNDQSKET 909
Cdd:NF033609  725 DSDSDsDSDSDSDS-DSDSDSDSDSDSDSDSDSDSDSdsdSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 803
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  910 KVMQPVSDQTKPAIQEPNQPNFNVSQA---FEALTGMDDSTQVAVNSVFGVLENMISQLDEEKKEGNEV---SDEKNLKD 983
Cdd:NF033609  804 SDSDSDSDSDSDSDSDSDSDSDSDSDSdsdSDSDSDSDSDSDSDSDSDSDSDSESDSNSDSESGSNNNVvppNSPKNGTN 883
                         330       340
                  ....*....|....*....|...
gi 334184121  984 EKNLKDAKNvtnevvspSEEEIP 1006
Cdd:NF033609  884 ASNKNEAKD--------SKEPLP 898
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
701-917 1.96e-07

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 56.46  E-value: 1.96e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  701 SDNSPGgvelehSPSKVSQRNSDSGKSQPVDNDQDDSpgnheSHTNEKTSAADDSEMASEAKSDSANQGPIGAEAVTNND 780
Cdd:NF033609  561 SDSDPG------SDSGSDSSNSDSGSDSGSDSTSDSG-----SDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSD 629
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  781 DKVEQGSGVATHQGQVETSKNDEKGAPIANEKSSVADGFEKASDAKNDSTNPQPVGAD-DITSDGDKvDQGVVLAQQQRK 859
Cdd:NF033609  630 SASDSDSASDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDsDSDSDSDS-DSDSDSDSDSDS 708
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 334184121  860 DETSKSDENakqSATDQNKVTSTDNEGDAGKSSASQPVEKDESNDQSKETKVMQPVSD 917
Cdd:NF033609  709 DSDSDSDSD---SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 763
MSCRAMM_ClfA NF033609
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...
717-1061 3.20e-07

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468110 [Multi-domain]  Cd Length: 934  Bit Score: 55.69  E-value: 3.20e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  717 VSQRNSDSGKSQPVDNDQDDSPGNHESHTNEKTSAADDSemASEAKSDSANQGPIGAEAVTNNDDKVEQGSGVATHQGQV 796
Cdd:NF033609  544 VPEQPDEPGEIEPIPEDSDSDPGSDSGSDSSNSDSGSDS--GSDSTSDSGSDSASDSDSASDSDSASDSDSASDSDSASD 621
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  797 ETSKNDEKGAPIANEKSSVADGFEKASDAKNDSTNPQPVGAD-DITSDGDKvDQGVVLAQQQRKDETSKSDENakqSATD 875
Cdd:NF033609  622 SDSASDSDSASDSDSASDSDSDSDSDSDSDSDSDSDSDSDSDsDSDSDSDS-DSDSDSDSDSDSDSDSDSDSD---SDSD 697
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  876 QNKVTSTDNEGDAGKSSASQPVEKDESNDQSKETKVMQPVSDQTKPAIQEPNQPNFNVSQafealTGMDDSTQVAVNSVF 955
Cdd:NF033609  698 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD-----SDSDSDSDSDSDSDS 772
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  956 GVLENMISQLDEEKKEGNEVSDEKNLKDEKNLKDAKNVTNEVVSPSEEEIPYKRETKSLMPSAKSRDP-ACSVSETEKCS 1034
Cdd:NF033609  773 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSdSDSDSDSDSDS 852
                         330       340
                  ....*....|....*....|....*..
gi 334184121 1035 DNDKVTGVVIEKQLGRDEFVIGKHSPK 1061
Cdd:NF033609  853 DSDSESDSNSDSESGSNNNVVPPNSPK 879
MDN1 COG5271
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ...
682-1011 6.38e-07

Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];


Pssm-ID: 444083 [Multi-domain]  Cd Length: 1028  Bit Score: 54.64  E-value: 6.38e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  682 DPKDKSDGLVSGSDETISGSDNSPGGVELEhsPSKVSQRNSDSGKSQPVDNDQDDSPGNHESHTNEKTSAADDSEMASEA 761
Cdd:COG5271   614 EADADADGAADEEETEEEAAEDEAAEPETD--ASEAADEDADAETEAEASADESEEEAEDESETSSEDAEEDADAAAAEA 691
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  762 KSDSANQGPIGAEAVTNNDDKVEQGSGVAthqgQVETSKNDEKGAPIANEKSSVADGFEKASDAKNDSTNPQPVGADDIT 841
Cdd:COG5271   692 SDDEEETEEADEDAETASEEADAEEADTE----ADGTAEEAEEAAEEAESADEEAASLPDEADAEEEAEEAEEAEEDDAD 767
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  842 SDGDKVDQGVVLAQQQRKDETSKSDENAKQSATDQNKVTSTDNEGDA--GKSSASQPVEKDESNDQSKETKVMQPVSDQT 919
Cdd:COG5271   768 GLEEALEEEKADAEEAATDEEAEAAAEEKEKVADEDQDTDEDALLDEaeADEEEDLDGEDEETADEALEDIEAGIAEDDE 847
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  920 KPAIQEPNQ------PNFNVSQAFEALTGMDDSTQVAVNSVFGVLENMISQLDEEKKEGNEVSDEKNLKDEKNLKDAKNV 993
Cdd:COG5271   848 EDDDAAAAKdvdadlDLDADLAADEHEAEEAQEAETDADADADAGEADSSGESSAAAEDDDAAEDADSDDGANDEDDDDD 927
                         330
                  ....*....|....*...
gi 334184121  994 TNEVVSPSEEEIPYKRET 1011
Cdd:COG5271   928 AEEERKDAEEDELGAAED 945
MDN1 COG5271
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ...
467-928 9.70e-06

Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];


Pssm-ID: 444083 [Multi-domain]  Cd Length: 1028  Bit Score: 50.78  E-value: 9.70e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  467 PLLEDVDVTVNPSKGLVFSEARAPEKSIGAKKLVQAAHEKTVNGYHLDPFRETLEDSDM--TPNSNLSPETDLEKNVKID 544
Cdd:COG5271   200 TATLGATVTTDPGDSVAADDDLAAEEGASAVVEEEDASEDAVAAADETLLADDDDTESAgaTAEVGGTPDTDDEATDDAD 279
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  545 YGSDETENNIVSTRVESIEDNESNVEESDRGQvLQTAEVVVSMLDVTMPGTLKAEEKKKVMDAVgrgetvltalQDAVPE 624
Cdd:COG5271   280 GLEAAEDDALDAELTAAQAADPESDDDADDST-LAALEGAAEDTEIATADELAAADDEDDDDSA----------AEDAAE 348
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  625 DVREKLTTAVTGILQSGGTKLNLENLKLPSIAPGLKKAEEEKKETSSAIGQSDSYSPDPKDKSDGLVSGSDEtisgsDNS 704
Cdd:COG5271   349 EAATAEDSAAEDTQDAEDEAAGEAADESEGADTDAAADEADAAADDSADDEEASADGGTSPTSDTDEEEEEA-----DED 423
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  705 PGGVELEHSPSKVSQRNSDSGKSQPVDNDQDDSPGNHESHTNEKTSAADDSEMASEAKSDSANQGPIGAEAVTNNDDKVE 784
Cdd:COG5271   424 ASAGETEDESTDVTSAEDDIATDEEADSLADEEEEAEAELDTEEDTESAEEDADGDEATDEDDASDDGDEEEAEEDAEAE 503
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  785 QGS--GVATHQGQVETSKNDEKGAPIANEKSSVADGFEKASDAKNDSTNPQPVGADDITSDGDKVDQGVvlAQQQRKDET 862
Cdd:COG5271   504 ADSdeLTAEETSADDGADTDAAADPEDSDEDALEDETEGEENAPGSDQDADETDEPEATAEEDEPDEAE--AETEDATEN 581
                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 334184121  863 SKSDEnAKQSATDQNKVTSTDNEGDAGKSSASQPVEKDESNDQSKETKVMQPVSDQTKPAIQEPNQ 928
Cdd:COG5271   582 ADADE-TEESADESEEAEASEDEAAEEEEADDDEADADADGAADEEETEEEAAEDEAAEPETDASE 646
MDN1 COG5271
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ...
694-1023 1.34e-04

Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];


Pssm-ID: 444083 [Multi-domain]  Cd Length: 1028  Bit Score: 46.93  E-value: 1.34e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  694 SDETISGSDNSPGGVELEHSPSKVSQRNSDSGKSQpVDNDQDDSPGNHESHTNEKTSAADDSEMASEAKSDSANQGPIGA 773
Cdd:COG5271   584 ADETEESADESEEAEASEDEAAEEEEADDDEADAD-ADGAADEEETEEEAAEDEAAEPETDASEAADEDADAETEAEASA 662
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  774 -EAVTNNDDKVEQGSGVATHQGQVET--SKNDEKGAPIANEKSSVADGFEKASDAKNDstnpqpvgADDITSDGDKVDQG 850
Cdd:COG5271   663 dESEEEAEDESETSSEDAEEDADAAAaeASDDEEETEEADEDAETASEEADAEEADTE--------ADGTAEEAEEAAEE 734
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  851 VVLAQQQRKDETSKSDENAKQSATDQNKVTSTDNEGDAGKSSASQPVEKDESNDQSKETKVMQPVSDQTKPAIQEPNQPN 930
Cdd:COG5271   735 AESADEEAASLPDEADAEEEAEEAEEAEEDDADGLEEALEEEKADAEEAATDEEAEAAAEEKEKVADEDQDTDEDALLDE 814
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  931 FNVSQAFEALTGMDDSTQVAVNSVFGVLENMISQLDEEKKEGNEVSDEKNLKDEKNLKDAKNVTNEVVSPSEEEIPYKRE 1010
Cdd:COG5271   815 AEADEEEDLDGEDEETADEALEDIEAGIAEDDEEDDDAAAAKDVDADLDLDADLAADEHEAEEAQEAETDADADADAGEA 894
                         330
                  ....*....|...
gi 334184121 1011 TKSLMPSAKSRDP 1023
Cdd:COG5271   895 DSSGESSAAAEDD 907
PRK08581 PRK08581
amidase domain-containing protein;
706-1008 2.48e-04

amidase domain-containing protein;


Pssm-ID: 236304 [Multi-domain]  Cd Length: 619  Bit Score: 45.93  E-value: 2.48e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  706 GGVELEHSPSKVSQRNSDSGKSQPVDNDQDDSPGNHESHTNEKTSAADDSEMASEAKSDSanqgpigaeavTNNDDKVEQ 785
Cdd:PRK08581   25 AYADDPQKDSTAKTTSHDSKKSNDDETSKDTSSKDTDKADNNNTSNQDNNDKKFSTIDSS-----------TSDSNNIID 93
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  786 GSGVATHQGQVETSKNDEKGAPIANEKSSVADGFEKASDAKnDSTNPQpvgaddiTSDGDKVDQGVVLAQQQRKDETSKS 865
Cdd:PRK08581   94 FIYKNLPQTNINQLLTKNKYDDNYSLTTLIQNLFNLNSDIS-DYEQPR-------NSEKSTNDSNKNSDSSIKNDTDTQS 165
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  866 DENAKqsaTDQNKVTStdnegdagkSSASQPvekDESNDQSKetkvmqpvsdqtkpaIQEPNQPNFNVSQAFEALTGMDD 945
Cdd:PRK08581  166 SKQDK---ADNQKAPS---------SNNTKP---STSNKQPN---------------SPKPTQPNQSNSQPASDDTANQK 215
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 334184121  946 STQVAVNSVF-GVLENMISQLDEEKKEGNEVSDEKNLKDEKNLKDAKNVTnevvSPSEEEIPYK 1008
Cdd:PRK08581  216 SSSKDNQSMSdSALDSILDQYSEDAKKTQKDYASQSKKDKTETSNTKNPQ----LPTQDELKHK 275
PRK08581 PRK08581
amidase domain-containing protein;
835-1038 2.86e-04

amidase domain-containing protein;


Pssm-ID: 236304 [Multi-domain]  Cd Length: 619  Bit Score: 45.93  E-value: 2.86e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  835 VGADDITSDgDKVDQGVVLAQQQRKDETSKSDENAKQSATDQNKVTSTDNEGDAGKSSASqpvEKDESNDQSKETKVMQP 914
Cdd:PRK08581   25 AYADDPQKD-STAKTTSHDSKKSNDDETSKDTSSKDTDKADNNNTSNQDNNDKKFSTIDS---STSDSNNIIDFIYKNLP 100
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  915 VSDQTKPAIQEPNQPNFNVSQAFEALTGMDDST---QVAVNSVFGVlENMISQLDEEKKegNEVSDEKNLKDEKNLKDAK 991
Cdd:PRK08581  101 QTNINQLLTKNKYDDNYSLTTLIQNLFNLNSDIsdyEQPRNSEKST-NDSNKNSDSSIK--NDTDTQSSKQDKADNQKAP 177
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 334184121  992 NVTNEVVSPSEEEipyKRETKSLMPSAKSRDPACSVSETEKCSDNDK 1038
Cdd:PRK08581  178 SSNNTKPSTSNKQ---PNSPKPTQPNQSNSQPASDDTANQKSSSKDN 221
PRK08581 PRK08581
amidase domain-containing protein;
694-910 2.47e-03

amidase domain-containing protein;


Pssm-ID: 236304 [Multi-domain]  Cd Length: 619  Bit Score: 42.85  E-value: 2.47e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  694 SDETISGSDNSPGGVELEHSPSKVSQRNSDSGKSQpVDNDQDDSPGNHESHTNEKTSAADDSEMASEAKSDSANQGPIGA 773
Cdd:PRK08581   46 SNDDETSKDTSSKDTDKADNNNTSNQDNNDKKFST-IDSSTSDSNNIIDFIYKNLPQTNINQLLTKNKYDDNYSLTTLIQ 124
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184121  774 EAVTNNDDkveqgsgvATHQGQVETSKNDEKgapiaNEKSSVADGFEKASDAKNDSTNpqpvgaddiTSDGDKVDQgvvl 853
Cdd:PRK08581  125 NLFNLNSD--------ISDYEQPRNSEKSTN-----DSNKNSDSSIKNDTDTQSSKQD---------KADNQKAPS---- 178
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 334184121  854 AQQQRKDETSKSDENAKQSATDQNKVTSTdNEGDAGKSSASQPVEK----------DESNDQSKETK 910
Cdd:PRK08581  179 SNNTKPSTSNKQPNSPKPTQPNQSNSQPA-SDDTANQKSSSKDNQSmsdsaldsilDQYSEDAKKTQ 244
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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