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Conserved domains on  [gi|320543646|ref|NP_001188884|]
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lipin, isoform M [Drosophila melanogaster]

Protein Classification

phosphatidate phosphatase( domain architecture ID 11151321)

phosphatidate phosphatase is a magnesium-dependent enzyme which catalyzes the conversion of phosphatidic acid to diacylglycerol during triglyceride, phosphatidylcholine and phosphatidylethanolamine biosynthesis and therefore controls the metabolism of fatty acids at different levels

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
LNS2 pfam08235
LNS2 (Lipin/Ned1/Smp2); This domain is found in Saccharomyces cerevisiae protein SMP2, ...
760-985 6.01e-144

LNS2 (Lipin/Ned1/Smp2); This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain (Pfam: PF04571). SMP2 (also known as PAH1) is involved in plasmid maintenance and respiration, and has been identified as a Mg2+-dependent phosphatidate phosphatase (EC:3.1.3.4) that contains a haloacid dehalogenase (HAD)-like domain. Lipin proteins are involved in adipose tissue development and insulin resistance.


:

Pssm-ID: 462403  Cd Length: 226  Bit Score: 430.39  E-value: 6.01e-144
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320543646   760 KSLRLSSAAIKKLNLKEGMNEIEFSVTTAYQGTTRCKCYLFRWKHNDKVVISDIDGTITKSDVLGHILPMVGKDWAQLGV 839
Cdd:pfam08235    1 KSLRLTSEQLKSLNLKPGANTITFSVTTQYQGTQRVEANIYLWKWDDKIVISDIDGTITKSDALGHILPMIGKDWTHPGV 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320543646   840 AQLFSKIEQNGYKLLYLSARAIGQSRVTREYLRSIRQGNVMLPDGPLLLNPTSLISAFHREVIEKKPEQFKIACLSDIRD 919
Cdd:pfam08235   81 AKLYSKIKRNGYKILYLSARAIGQADLTREYLKNVTQDGYKLPDGPVLLSPDRLFSALHREVILRKPEVFKIACLRDIKS 160
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 320543646   920 LFP-DKEPFYAGYGNRINDVWAYRAVGIPIMRIFTINTKGELKHELTQTFQSSgYINQSLEVDEYFP 985
Cdd:pfam08235  161 LFPpDVNPFYAGFGNRITDVISYRAVGIPESRIFTINPKGELRHELLKTYKSS-YLSLNELVDHMFP 226
Lipin_N pfam04571
lipin, N-terminal conserved region; Mutations in the lipin gene lead to fatty liver dystrophy ...
1-104 1.32e-55

lipin, N-terminal conserved region; Mutations in the lipin gene lead to fatty liver dystrophy in mice. The protein has been shown to be phosphorylated by the TOR Ser/Thr protein kinases in response to insulin stimulation. The conserved region is found at the N-terminus of the member proteins.


:

Pssm-ID: 461356  Cd Length: 103  Bit Score: 187.75  E-value: 1.32e-55
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320543646     1 MNSLARVFSNFRDFYNDINAATLTGAIDVIVVEQRDGEFQCSPFHVRFGKLGVLRSREKVVDIEINGVPVDIQMKLGDSG 80
Cdd:pfam04571    1 MNYVGKLFGSVSELYNSINPATLSGAIDVIVVEQPDGTLACSPFHVRFGKLGVLRSREKVVDIEVNGEPVDLHMKLGESG 80
                           90       100
                   ....*....|....*....|....
gi 320543646    81 EAFFVeECLEDEDEELPANLATSP 104
Cdd:pfam04571   81 EAFFV-FETEDDEEDVPDYLQTSP 103
Lipin_mid pfam16876
Lipin/Ned1/Smp2 multi-domain protein middle domain; This is a middle domain of lipins. Overall ...
562-674 2.00e-41

Lipin/Ned1/Smp2 multi-domain protein middle domain; This is a middle domain of lipins. Overall the enzyme acts as a magnesium-dependent phosphatidate phosphatase enzyme that catalyzes the conversion of phosphatidic acid to diacylglycerol during triglyceride, phosphatidylcholine and phosphatidylethanolamine biosynthesis. EC:5.2.1.8.


:

Pssm-ID: 465292  Cd Length: 98  Bit Score: 147.05  E-value: 2.00e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320543646   562 VAMSMCGM--SEQGAPPSDEEFDRHLVNYPDVCKSPSIFSSPNLVVRLNGKYYTWMAACPIVMTMITFQKPLTHDAIEQL 639
Cdd:pfam16876    1 VELSLCGGllQGQNEEISDEAFEEHKVTYEDFCKNPSILNDPNLVVRIGGKYYNWAVAAPILLSMQAFQKPLPDDAIEQL 80
                           90       100       110
                   ....*....|....*....|....*....|....*
gi 320543646   640 MSQtvdgkclpgdekqeavaQADNGGQTKRYWWSW 674
Cdd:pfam16876   81 IKE-----------------ARKNPKKGRRSWFSW 98
 
Name Accession Description Interval E-value
LNS2 pfam08235
LNS2 (Lipin/Ned1/Smp2); This domain is found in Saccharomyces cerevisiae protein SMP2, ...
760-985 6.01e-144

LNS2 (Lipin/Ned1/Smp2); This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain (Pfam: PF04571). SMP2 (also known as PAH1) is involved in plasmid maintenance and respiration, and has been identified as a Mg2+-dependent phosphatidate phosphatase (EC:3.1.3.4) that contains a haloacid dehalogenase (HAD)-like domain. Lipin proteins are involved in adipose tissue development and insulin resistance.


Pssm-ID: 462403  Cd Length: 226  Bit Score: 430.39  E-value: 6.01e-144
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320543646   760 KSLRLSSAAIKKLNLKEGMNEIEFSVTTAYQGTTRCKCYLFRWKHNDKVVISDIDGTITKSDVLGHILPMVGKDWAQLGV 839
Cdd:pfam08235    1 KSLRLTSEQLKSLNLKPGANTITFSVTTQYQGTQRVEANIYLWKWDDKIVISDIDGTITKSDALGHILPMIGKDWTHPGV 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320543646   840 AQLFSKIEQNGYKLLYLSARAIGQSRVTREYLRSIRQGNVMLPDGPLLLNPTSLISAFHREVIEKKPEQFKIACLSDIRD 919
Cdd:pfam08235   81 AKLYSKIKRNGYKILYLSARAIGQADLTREYLKNVTQDGYKLPDGPVLLSPDRLFSALHREVILRKPEVFKIACLRDIKS 160
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 320543646   920 LFP-DKEPFYAGYGNRINDVWAYRAVGIPIMRIFTINTKGELKHELTQTFQSSgYINQSLEVDEYFP 985
Cdd:pfam08235  161 LFPpDVNPFYAGFGNRITDVISYRAVGIPESRIFTINPKGELRHELLKTYKSS-YLSLNELVDHMFP 226
LNS2 smart00775
This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal ...
808-963 1.91e-89

This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins; SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.


Pssm-ID: 197870  Cd Length: 157  Bit Score: 283.78  E-value: 1.91e-89
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320543646    808 VVISDIDGTITKSDVLGHILPMVGKDWAQLGVAQLFSKIEQNGYKLLYLSARAIGQSRVTREYLRSIRQGNVMLPDGPLL 887
Cdd:smart00775    1 IVISDIDGTITKSDVLGHVVPIIGKDWTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHNLPHGPVL 80
                            90       100       110       120       130       140       150
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 320543646    888 LNPTSLISAFHREVIEKKPEQFKIACLSDIRDLFP-DKEPFYAGYGNRINDVWAYRAVGIPIMRIFTINTKGELKHE 963
Cdd:smart00775   81 LSPDRLFAALHREVISKKPEVFKIACLRDIKNLFPpQGNPFYAGFGNRITDVISYSAVGIPPSRIFTINPKGEVHQE 157
Lipin_N pfam04571
lipin, N-terminal conserved region; Mutations in the lipin gene lead to fatty liver dystrophy ...
1-104 1.32e-55

lipin, N-terminal conserved region; Mutations in the lipin gene lead to fatty liver dystrophy in mice. The protein has been shown to be phosphorylated by the TOR Ser/Thr protein kinases in response to insulin stimulation. The conserved region is found at the N-terminus of the member proteins.


Pssm-ID: 461356  Cd Length: 103  Bit Score: 187.75  E-value: 1.32e-55
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320543646     1 MNSLARVFSNFRDFYNDINAATLTGAIDVIVVEQRDGEFQCSPFHVRFGKLGVLRSREKVVDIEINGVPVDIQMKLGDSG 80
Cdd:pfam04571    1 MNYVGKLFGSVSELYNSINPATLSGAIDVIVVEQPDGTLACSPFHVRFGKLGVLRSREKVVDIEVNGEPVDLHMKLGESG 80
                           90       100
                   ....*....|....*....|....
gi 320543646    81 EAFFVeECLEDEDEELPANLATSP 104
Cdd:pfam04571   81 EAFFV-FETEDDEEDVPDYLQTSP 103
Lipin_mid pfam16876
Lipin/Ned1/Smp2 multi-domain protein middle domain; This is a middle domain of lipins. Overall ...
562-674 2.00e-41

Lipin/Ned1/Smp2 multi-domain protein middle domain; This is a middle domain of lipins. Overall the enzyme acts as a magnesium-dependent phosphatidate phosphatase enzyme that catalyzes the conversion of phosphatidic acid to diacylglycerol during triglyceride, phosphatidylcholine and phosphatidylethanolamine biosynthesis. EC:5.2.1.8.


Pssm-ID: 465292  Cd Length: 98  Bit Score: 147.05  E-value: 2.00e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320543646   562 VAMSMCGM--SEQGAPPSDEEFDRHLVNYPDVCKSPSIFSSPNLVVRLNGKYYTWMAACPIVMTMITFQKPLTHDAIEQL 639
Cdd:pfam16876    1 VELSLCGGllQGQNEEISDEAFEEHKVTYEDFCKNPSILNDPNLVVRIGGKYYNWAVAAPILLSMQAFQKPLPDDAIEQL 80
                           90       100       110
                   ....*....|....*....|....*....|....*
gi 320543646   640 MSQtvdgkclpgdekqeavaQADNGGQTKRYWWSW 674
Cdd:pfam16876   81 IKE-----------------ARKNPKKGRRSWFSW 98
SMP2 COG5083
Phosphatidate phosphatase PAH1, contains Lipin and LNS2 domains. can be involved in plasmid ...
807-960 3.36e-14

Phosphatidate phosphatase PAH1, contains Lipin and LNS2 domains. can be involved in plasmid maintenance [Lipid transport and metabolism];


Pssm-ID: 444053  Cd Length: 353  Bit Score: 75.27  E-value: 3.36e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320543646  807 KVVISDIDGTITKSDVLGhILPMVGKDWAQL--GVAQLFSKIEQNGYKLLYLSARAIGQSRVTREYLRSirQGnvmLPDG 884
Cdd:COG5083   186 KTVVFDIDGTLTLNDFEG-VGDYLGGETADAhpYAAEVVQAYADKGYRPIYVTGRPYWLAKDTREWLDT--QG---LPPG 259
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 320543646  885 PLLLNPTSlisafhREVIEKKPEQFKIAclsDIRDLFPDKEPFYAGYGNRINDVWAYRAVGIPIMRIFTINTKGEL 960
Cdd:COG5083   260 ILHTTPSA------TGPIGPDTARYKTA---EIQLLIDDGLNIVRAYGNAATDAEAYANAGIPKSETYIIGEDAGL 326
pseT PHA02530
polynucleotide kinase; Provisional
804-875 4.94e-03

polynucleotide kinase; Provisional


Pssm-ID: 222856 [Multi-domain]  Cd Length: 300  Bit Score: 40.39  E-value: 4.94e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 320543646  804 HNDKVVISDIDGTITKSDVLGHI-LPMVGKDWAQLGVAQLFSKIEQNGYKLLYLSARAIGQSRVTREYLRSIR 875
Cdd:PHA02530  156 GLPKAVIFDIDGTLAKMGGRSPYdWTKVKEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQTD 228
 
Name Accession Description Interval E-value
LNS2 pfam08235
LNS2 (Lipin/Ned1/Smp2); This domain is found in Saccharomyces cerevisiae protein SMP2, ...
760-985 6.01e-144

LNS2 (Lipin/Ned1/Smp2); This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain (Pfam: PF04571). SMP2 (also known as PAH1) is involved in plasmid maintenance and respiration, and has been identified as a Mg2+-dependent phosphatidate phosphatase (EC:3.1.3.4) that contains a haloacid dehalogenase (HAD)-like domain. Lipin proteins are involved in adipose tissue development and insulin resistance.


Pssm-ID: 462403  Cd Length: 226  Bit Score: 430.39  E-value: 6.01e-144
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320543646   760 KSLRLSSAAIKKLNLKEGMNEIEFSVTTAYQGTTRCKCYLFRWKHNDKVVISDIDGTITKSDVLGHILPMVGKDWAQLGV 839
Cdd:pfam08235    1 KSLRLTSEQLKSLNLKPGANTITFSVTTQYQGTQRVEANIYLWKWDDKIVISDIDGTITKSDALGHILPMIGKDWTHPGV 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320543646   840 AQLFSKIEQNGYKLLYLSARAIGQSRVTREYLRSIRQGNVMLPDGPLLLNPTSLISAFHREVIEKKPEQFKIACLSDIRD 919
Cdd:pfam08235   81 AKLYSKIKRNGYKILYLSARAIGQADLTREYLKNVTQDGYKLPDGPVLLSPDRLFSALHREVILRKPEVFKIACLRDIKS 160
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 320543646   920 LFP-DKEPFYAGYGNRINDVWAYRAVGIPIMRIFTINTKGELKHELTQTFQSSgYINQSLEVDEYFP 985
Cdd:pfam08235  161 LFPpDVNPFYAGFGNRITDVISYRAVGIPESRIFTINPKGELRHELLKTYKSS-YLSLNELVDHMFP 226
LNS2 smart00775
This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal ...
808-963 1.91e-89

This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins; SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.


Pssm-ID: 197870  Cd Length: 157  Bit Score: 283.78  E-value: 1.91e-89
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320543646    808 VVISDIDGTITKSDVLGHILPMVGKDWAQLGVAQLFSKIEQNGYKLLYLSARAIGQSRVTREYLRSIRQGNVMLPDGPLL 887
Cdd:smart00775    1 IVISDIDGTITKSDVLGHVVPIIGKDWTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHNLPHGPVL 80
                            90       100       110       120       130       140       150
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 320543646    888 LNPTSLISAFHREVIEKKPEQFKIACLSDIRDLFP-DKEPFYAGYGNRINDVWAYRAVGIPIMRIFTINTKGELKHE 963
Cdd:smart00775   81 LSPDRLFAALHREVISKKPEVFKIACLRDIKNLFPpQGNPFYAGFGNRITDVISYSAVGIPPSRIFTINPKGEVHQE 157
Lipin_N pfam04571
lipin, N-terminal conserved region; Mutations in the lipin gene lead to fatty liver dystrophy ...
1-104 1.32e-55

lipin, N-terminal conserved region; Mutations in the lipin gene lead to fatty liver dystrophy in mice. The protein has been shown to be phosphorylated by the TOR Ser/Thr protein kinases in response to insulin stimulation. The conserved region is found at the N-terminus of the member proteins.


Pssm-ID: 461356  Cd Length: 103  Bit Score: 187.75  E-value: 1.32e-55
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320543646     1 MNSLARVFSNFRDFYNDINAATLTGAIDVIVVEQRDGEFQCSPFHVRFGKLGVLRSREKVVDIEINGVPVDIQMKLGDSG 80
Cdd:pfam04571    1 MNYVGKLFGSVSELYNSINPATLSGAIDVIVVEQPDGTLACSPFHVRFGKLGVLRSREKVVDIEVNGEPVDLHMKLGESG 80
                           90       100
                   ....*....|....*....|....
gi 320543646    81 EAFFVeECLEDEDEELPANLATSP 104
Cdd:pfam04571   81 EAFFV-FETEDDEEDVPDYLQTSP 103
Lipin_mid pfam16876
Lipin/Ned1/Smp2 multi-domain protein middle domain; This is a middle domain of lipins. Overall ...
562-674 2.00e-41

Lipin/Ned1/Smp2 multi-domain protein middle domain; This is a middle domain of lipins. Overall the enzyme acts as a magnesium-dependent phosphatidate phosphatase enzyme that catalyzes the conversion of phosphatidic acid to diacylglycerol during triglyceride, phosphatidylcholine and phosphatidylethanolamine biosynthesis. EC:5.2.1.8.


Pssm-ID: 465292  Cd Length: 98  Bit Score: 147.05  E-value: 2.00e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320543646   562 VAMSMCGM--SEQGAPPSDEEFDRHLVNYPDVCKSPSIFSSPNLVVRLNGKYYTWMAACPIVMTMITFQKPLTHDAIEQL 639
Cdd:pfam16876    1 VELSLCGGllQGQNEEISDEAFEEHKVTYEDFCKNPSILNDPNLVVRIGGKYYNWAVAAPILLSMQAFQKPLPDDAIEQL 80
                           90       100       110
                   ....*....|....*....|....*....|....*
gi 320543646   640 MSQtvdgkclpgdekqeavaQADNGGQTKRYWWSW 674
Cdd:pfam16876   81 IKE-----------------ARKNPKKGRRSWFSW 98
SMP2 COG5083
Phosphatidate phosphatase PAH1, contains Lipin and LNS2 domains. can be involved in plasmid ...
807-960 3.36e-14

Phosphatidate phosphatase PAH1, contains Lipin and LNS2 domains. can be involved in plasmid maintenance [Lipid transport and metabolism];


Pssm-ID: 444053  Cd Length: 353  Bit Score: 75.27  E-value: 3.36e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320543646  807 KVVISDIDGTITKSDVLGhILPMVGKDWAQL--GVAQLFSKIEQNGYKLLYLSARAIGQSRVTREYLRSirQGnvmLPDG 884
Cdd:COG5083   186 KTVVFDIDGTLTLNDFEG-VGDYLGGETADAhpYAAEVVQAYADKGYRPIYVTGRPYWLAKDTREWLDT--QG---LPPG 259
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 320543646  885 PLLLNPTSlisafhREVIEKKPEQFKIAclsDIRDLFPDKEPFYAGYGNRINDVWAYRAVGIPIMRIFTINTKGEL 960
Cdd:COG5083   260 ILHTTPSA------TGPIGPDTARYKTA---EIQLLIDDGLNIVRAYGNAATDAEAYANAGIPKSETYIIGEDAGL 326
APP1_cat pfam09949
Phosphatidate phosphatase APP1, catalytic domain; This entry represents a conserved region ...
809-924 3.70e-04

Phosphatidate phosphatase APP1, catalytic domain; This entry represents a conserved region found in Phosphatidate phosphatase APP1 from yeast, which contains the catalytic motif DXDX(T/V), present in other Mg+2-dependent phosphatases. This domain has a weak sequence similarity to the haloacid dehalogenase-like domain. APP1 catalyzes the dephosphorylation of phosphatidate to yield diacylglycerol and may play a role in vesicular trafficking through its phosphatidate phosphatase activity at cortical actin patches.


Pssm-ID: 462930  Cd Length: 153  Bit Score: 42.10  E-value: 3.70e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320543646   809 VISDIDGTITKSDVLGhilPMVG----------KDWAQLGVAQLFSKI-EQNGYKLLYLSARAIGQSRVTREYLRsirqg 877
Cdd:pfam09949    1 VISDIDDTIKVTGVTS---PLRAlfntffvnalTRVPIPGMPELYRALsASPGNPFFYVSNSPWNLYPFLRDFLE----- 72
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 320543646   878 NVMLPDGPLLLNP-----TSLISAFHrevieKKPEQFKIACLSDIRDLFPDK 924
Cdd:pfam09949   73 RHGYPPGSLLLRDygstdTSLLRSGL-----TPSAEHKRASIERILRDFPNR 119
pseT PHA02530
polynucleotide kinase; Provisional
804-875 4.94e-03

polynucleotide kinase; Provisional


Pssm-ID: 222856 [Multi-domain]  Cd Length: 300  Bit Score: 40.39  E-value: 4.94e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 320543646  804 HNDKVVISDIDGTITKSDVLGHI-LPMVGKDWAQLGVAQLFSKIEQNGYKLLYLSARAIGQSRVTREYLRSIR 875
Cdd:PHA02530  156 GLPKAVIFDIDGTLAKMGGRSPYdWTKVKEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQTD 228
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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