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Conserved domains on  [gi|311213850|ref|NP_001185654|]
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protein C10 [Rattus norvegicus]

Protein Classification

P_C10 domain-containing protein( domain architecture ID 10633169)

P_C10 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
P_C10 pfam14974
Protein C10; The function of this protein family is unknown. Mutations in protein C (C12orf57) ...
 11-113 3.01e-51

Protein C10; The function of this protein family is unknown. Mutations in protein C (C12orf57) are implicated in the pathogenesis of colobomatous microphthalmia.


:

Pssm-ID: 464416  Cd Length: 103  Bit Score: 157.44  E-value: 3.01e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311213850   11 LSAEQAKVVLAEVIQAFSAPENAVRMDEARDNACNDMGKMLQFVLPVATQIQQEVIKAYGFSCDGEGVLKFARLVKSYEA 90
Cdd:pfam14974   1 LTSEQAKAILTEVLEALNTPENAAKLEEAKANAGNDMLKMMQFVFPLATQIQMEVIKKYGFPEDREGVMQFAQLIRSLEK 80

                          90       100
                  ....*....|....*....|...
gi 311213850   91 QDPEIASLSGKLKALFLPPMTLP 113
Cdd:pfam14974  81 DDPEVARLHSQLRSLFLPPVPLP 103
 
Name Accession Description Interval E-value
P_C10 pfam14974
Protein C10; The function of this protein family is unknown. Mutations in protein C (C12orf57) ...
 11-113 3.01e-51

Protein C10; The function of this protein family is unknown. Mutations in protein C (C12orf57) are implicated in the pathogenesis of colobomatous microphthalmia.


Pssm-ID: 464416  Cd Length: 103  Bit Score: 157.44  E-value: 3.01e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311213850   11 LSAEQAKVVLAEVIQAFSAPENAVRMDEARDNACNDMGKMLQFVLPVATQIQQEVIKAYGFSCDGEGVLKFARLVKSYEA 90
Cdd:pfam14974   1 LTSEQAKAILTEVLEALNTPENAAKLEEAKANAGNDMLKMMQFVFPLATQIQMEVIKKYGFPEDREGVMQFAQLIRSLEK 80

                          90       100
                  ....*....|....*....|...
gi 311213850   91 QDPEIASLSGKLKALFLPPMTLP 113
Cdd:pfam14974  81 DDPEVARLHSQLRSLFLPPVPLP 103
 
Name Accession Description Interval E-value
P_C10 pfam14974
Protein C10; The function of this protein family is unknown. Mutations in protein C (C12orf57) ...
 11-113 3.01e-51

Protein C10; The function of this protein family is unknown. Mutations in protein C (C12orf57) are implicated in the pathogenesis of colobomatous microphthalmia.


Pssm-ID: 464416  Cd Length: 103  Bit Score: 157.44  E-value: 3.01e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311213850   11 LSAEQAKVVLAEVIQAFSAPENAVRMDEARDNACNDMGKMLQFVLPVATQIQQEVIKAYGFSCDGEGVLKFARLVKSYEA 90
Cdd:pfam14974   1 LTSEQAKAILTEVLEALNTPENAAKLEEAKANAGNDMLKMMQFVFPLATQIQMEVIKKYGFPEDREGVMQFAQLIRSLEK 80

                          90       100
                  ....*....|....*....|...
gi 311213850   91 QDPEIASLSGKLKALFLPPMTLP 113
Cdd:pfam14974  81 DDPEVARLHSQLRSLFLPPVPLP 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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