|
Name |
Accession |
Description |
Interval |
E-value |
| TPR_MLP1_2 |
pfam07926 |
TPR/MLP1/MLP2-like protein; The sequences featured in this family are similar to a region of ... |
1066-1193 |
9.49e-20 |
|
TPR/MLP1/MLP2-like protein; The sequences featured in this family are similar to a region of human TPR protein and to yeast myosin-like proteins 1 (MLP1) and 2 (MLP2). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores. TPR is thought to be a component of nuclear pore complex- attached intra-nuclear filaments, and is implicated in nuclear protein import. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerization of kinase domains or by targeting these kinases to the nuclear pore complex. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity.
Pssm-ID: 462316 [Multi-domain] Cd Length: 129 Bit Score: 86.92 E-value: 9.49e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1066 AEIASLREENLVKKSQIEAMNIQMSTLKNDLETEHEKWRVAQRNYERQVILLSETIQELTKTSQALAALQEEASELRKLA 1145
Cdd:pfam07926 1 AELSSLQSEIKRLKEEAADAEAQLQKLQEDLEKQAEIAREAQQNYERELVLHAEDIKALQALREELNELKAEIAELKAEA 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 334184013 1146 DARGIENSELNAKWSEEKLMLEQQKNLAEKKYHELNEQNKLLHSRLEA 1193
Cdd:pfam07926 81 ESAKAELEESEESWEEQKKELEKELSELEKRIEDLNEQNKLLHDQLES 128
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
610-1397 |
9.90e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 83.95 E-value: 9.90e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 610 KTDEASAKVATVLKRAEEQGQMIESLHTSVAMYKRLYEEEQKLHSSDSRSSDLSPAVVPGRKNFLHLLEDSEEATKRAQE 689
Cdd:TIGR02168 219 KAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEIS 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 690 KAFERIRILEEDFAKARSEVIAIRSERDKLAMEANFAREKLEGIMKESERKREEMNSVLARNIEFsqliidhQRKLRESS 769
Cdd:TIGR02168 299 RLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEEL-------EAELEELE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 770 ESLHAAEEISRKLSMEVSVLKQEKELLSNAEKRASDEVSALSQRVYRLQA---TLDTVQSTEEVREETRAAERRKQEEHI 846
Cdd:TIGR02168 372 SRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQeieELLKKLEEAELKELQAELEELEEELEE 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 847 KQLQREWAEAKKELQEER----SNARDFTSDRNQTLNNAVMQVEEM---GKELANALKAVSVAESRASVAEARLSDL--- 916
Cdd:TIGR02168 452 LQEELERLEEALEELREEleeaEQALDAAERELAQLQARLDSLERLqenLEGFSEGVKALLKNQSGLSGILGVLSELisv 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 917 EKKIRSSDPKTLDMDSGGIVSlSDKEAALVIIldvvhKIQAGFRIGSAMSIELRTAKEEieKLRGEVESSKSHMLQYKSI 996
Cdd:TIGR02168 532 DEGYEAAIEAALGGRLQAVVV-ENLNAAKKAI-----AFLKQNELGRVTFLPLDSIKGT--EIQGNDREILKNIEGFLGV 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 997 AQVNETALKQMESAHENF--------RLEAEKRQRSLEAElvslRERVSELENDCIQKSEQLATAAAGKEDALLSASAEI 1068
Cdd:TIGR02168 604 AKDLVKFDPKLRKALSYLlggvlvvdDLDNALELAKKLRP----GYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREI 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1069 ASLREENLVKKSQIEAMNIQMSTLK---NDLETEHEKWRVAQRNYERQVILLSETIQELTKTSQALAALQEEASELRKLA 1145
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRkelEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEL 759
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1146 DARGIENSELNAKWSEEKLMLEQQKNLAEKKYHELNEQNKLLHSRLEAKHLNSAEKNSRSGTISSGSTDSDHLEDSGLQR 1225
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERR 839
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1226 VVHYLRRTKEIAETEISLMRQeklrlQSQLESALKMAESARGSLTAERASTRAslltddgikSLQLQVSEMNLLRESNMQ 1305
Cdd:TIGR02168 840 LEDLEEQIEELSEDIESLAAE-----IEELEELIEELESELEALLNERASLEE---------ALALLRSELEELSEELRE 905
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1306 LREENKHNFEKCQEMREVAQKARMESENFENLLKTKQTELdlcmkeMEKLRMETDLHKKRVDELretyrnidIADYNRLK 1385
Cdd:TIGR02168 906 LESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL------SEEYSLTLEEAEALENKI--------EDDEEEAR 971
|
810
....*....|..
gi 334184013 1386 DEVRQLEEKLKA 1397
Cdd:TIGR02168 972 RRLKRLENKIKE 983
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1033-1593 |
2.22e-13 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 76.33 E-value: 2.22e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1033 RERVSELENDCIQKSEQLATAAAGKEDALLSASAEIASLREENLVKKSQI-----EAMNIQMSTLKNDLETEHEKWR--- 1104
Cdd:PTZ00121 1071 GLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAkkkaeDARKAEEARKAEDARKAEEARKaed 1150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1105 -----VAQRNYERQVILLSETIQELTKTSQALAALQ-EEASELRKLADARGIENSElnaKWSEEKLMLEQQKNLAEKKYH 1178
Cdd:PTZ00121 1151 akrveIARKAEDARKAEEARKAEDAKKAEAARKAEEvRKAEELRKAEDARKAEAAR---KAEEERKAEEARKAEDAKKAE 1227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1179 ELNEQNKLLHSRLEAKHLNSAEKNSRSGTISSGSTDSDHLEDSGLQ----RVVHYLRRTKEIAETEISLMRQEKlrlqSQ 1254
Cdd:PTZ00121 1228 AVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKaeeaRKADELKKAEEKKKADEAKKAEEK----KK 1303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1255 LESALKMAESARGSLTAERASTRASLLTDdgikSLQLQVSEMNLLRESNMQLREENKHNFEKCQEMREVAQKARMESENF 1334
Cdd:PTZ00121 1304 ADEAKKKAEEAKKADEAKKKAEEAKKKAD----AAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKK 1379
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1335 ENLLKTKQTEldlcMKEMEKLRMETDLHKKRVDELRETYRNIDIADYNRLK-DEVRQLEE-------------------- 1393
Cdd:PTZ00121 1380 ADAAKKKAEE----KKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKaEEKKKADEakkkaeeakkadeakkkaee 1455
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1394 -------KLKAKDAHAEDCKKVLLEKQNKISLLEKELTNCKKDLSEREKRLDDAQQAQATMQSEFNKQKQELEKNKKIHY 1466
Cdd:PTZ00121 1456 akkaeeaKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKK 1535
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1467 TLNMTKRKYEKEKDELSKQNQ----SLAKQLEEAKEEAGKRTTTDAVVEQSVKEREEKEKRIQILDKYVHQLKDEVRKKT 1542
Cdd:PTZ00121 1536 ADEAKKAEEKKKADELKKAEElkkaEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKA 1615
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|..
gi 334184013 1543 EDLKKKDEELTKERSERKSVEKEVGDSLTKIKK-EKTKVDEELAKLERYQTA 1593
Cdd:PTZ00121 1616 EEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKaEELKKAEEENKIKAAEEA 1667
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
836-1605 |
5.32e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 71.63 E-value: 5.32e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 836 AAERRKQEEHIkQLQREWAEAKKELQEERSNARdftsdrnqtLNNAVMQVEEMGKELANALKAVSVAESRASVAEARLSD 915
Cdd:TIGR02168 195 LNELERQLKSL-ERQAEKAERYKELKAELRELE---------LALLVLRLEELREELEELQEELKEAEEELEELTAELQE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 916 LEKKIrssdpktldmdsggivslSDKEAALVIILDVVHKIQAGFRigsAMSIELRTAKEEIEKLRGEVESSKShmlQYKS 995
Cdd:TIGR02168 265 LEEKL------------------EELRLEVSELEEEIEELQKELY---ALANEISRLEQQKQILRERLANLER---QLEE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 996 IAQVNETALKQMESAHENFRlEAEKRQRSLEAELVSLRERVSELEndciQKSEQLATAAAGKEDALLSASAEIASLREEN 1075
Cdd:TIGR02168 321 LEAQLEELESKLDELAEELA-ELEEKLEELKEELESLEAELEELE----AELEELESRLEELEEQLETLRSKVAQLELQI 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1076 LVKKSQIEAMNIQMSTLKNDLETEHEKWRVAQRNYERQVIL-----LSETIQELTKTSQALAALQEEASELRKL------ 1144
Cdd:TIGR02168 396 ASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKelqaeLEELEEELEELQEELERLEEALEELREEleeaeq 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1145 -ADARGIENSELNAKWSEEKLMLEQQKNLAEKKYHELNEQNKLlhsrleakhlnSAEKNSRSGTISSGSTDSDHLEDSGL 1223
Cdd:TIGR02168 476 aLDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGL-----------SGILGVLSELISVDEGYEAAIEAALG 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1224 QRVVHYLRRTKEIAETEISLMRQEKLRLQSQLESALKMAESARGSLTAERASTRASL-LTDDGIKS-LQLQVSEMNLL-- 1299
Cdd:TIGR02168 545 GRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLgVAKDLVKFdPKLRKALSYLLgg 624
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1300 ------RESNMQLREENKHNFEKCQEMREVAQKARM---ESENFENLLKTKQTELDLCMKEMEKLRMETDLHKKRVDELR 1370
Cdd:TIGR02168 625 vlvvddLDNALELAKKLRPGYRIVTLDGDLVRPGGVitgGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELR 704
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1371 EtyrnidiadynrlkdEVRQLEEKLKAKDAHAEDCKKVLLEKQNKISLLEKELTNCKKDLSEREKRLDDAQQAQATMQSE 1450
Cdd:TIGR02168 705 K---------------ELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEER 769
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1451 FNKQKQELEKNKKIHYTLNMTKRKYEKEKDELSKQNQSLAKQLEEAKEEAGKRTTTDAV-----------VEQSVKEREE 1519
Cdd:TIGR02168 770 LEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESlerriaaterrLEDLEEQIEE 849
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1520 KEKRIQILDKYVHQLKDEVRKKTEDLKKKDEELTKERSERKSVEKEVGDSLTKIKKEKTKVDEELAKLERYQTALTHLSE 1599
Cdd:TIGR02168 850 LSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLEL 929
|
....*.
gi 334184013 1600 ELEKLK 1605
Cdd:TIGR02168 930 RLEGLE 935
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1246-2006 |
2.65e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 69.40 E-value: 2.65e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1246 QEKLRLQSQLESALKMAESARGSLT--AERASTRASLLTddgiKSLQLQVSEMNLLRESNMQLREENKHNFEKCQEMREV 1323
Cdd:PTZ00121 1084 KEDNRADEATEEAFGKAEEAKKTETgkAEEARKAEEAKK----KAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARK 1159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1324 AQKARM--ESENFENLLKTKQTELDLCMKEMEKLRMETDLhkKRVDELREtYRNIDIADYNRLKDEVRQLEEKLKAKDAH 1401
Cdd:PTZ00121 1160 AEDARKaeEARKAEDAKKAEAARKAEEVRKAEELRKAEDA--RKAEAARK-AEEERKAEEARKAEDAKKAEAVKKAEEAK 1236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1402 --AEDCKKVLLEKQNKISLLEKELTNCKKDLSEREKRLDDAQQAQATMQSEFNKQKQELEKNKKIHYTLNMTKRKYEKEK 1479
Cdd:PTZ00121 1237 kdAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKK 1316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1480 -DELSKQNQSLAKQLEEAKEEAGKRTTTDAVVEQSVKEREEKEKRIQILDKYVHQLKDEVRKKTEDLKKKDEELTKERSE 1558
Cdd:PTZ00121 1317 aDEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEA 1396
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1559 RKSVE--KEVGDSLTKIKKEKTKVDEELAKLERYQTA--LTHLSEELEKLKHADGNLPEGTSAVQVLSGSILNDQAAAYV 1634
Cdd:PTZ00121 1397 KKKAEedKKKADELKKAAAAKKKADEAKKKAEEKKKAdeAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAK 1476
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1635 SAVEYFERVARSIASNSQVSTKPTDMVTEPSSGIPAAEPSTMTRVPSSTPLIKSPVATTQQLPKVASDNK---------- 1704
Cdd:PTZ00121 1477 KKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKkadelkkaee 1556
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1705 -----EKRLISQKPSTEFRRPSGRRivRPQLVKPEESPKVDVDMPEAEGTGDEGKQPAAHEPESQVTTSVRPVQTLVRKR 1779
Cdd:PTZ00121 1557 lkkaeEKKKAEEAKKAEEDKNMALR--KAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKK 1634
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1780 QADSLVSEPQQDSLTQGETSSEIAPPASKKAKGSESHPDTSEGENLAKEPAIDELMDATTTTDGDNEETEAENAEEKTEE 1859
Cdd:PTZ00121 1635 VEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEE 1714
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1860 YVEAQQDNEADE----PVEESPTETETIPTE-EESRDQTEEENQEPLTDMESDKEEGELDLDTLEDLEEGTDVASMMRSP 1934
Cdd:PTZ00121 1715 KKKAEELKKAEEenkiKAEEAKKEAEEDKKKaEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRM 1794
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1935 EKEEVQPETLAT--------PTQSPSRMETAMEEAETTIETPVEDDKTDEGGDAAEEAADIPNNANDQQEAPETDIKPET 2006
Cdd:PTZ00121 1795 EVDKKIKDIFDNfaniieggKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEK 1874
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
586-1168 |
4.66e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.42 E-value: 4.66e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 586 RSLSEQIESRETELketfevdLKNKTDEASAKVATVLKRAEEQGQMIESLHTSVAMYKRLYEEEQKLHSSDSRSSDLspa 665
Cdd:COG1196 216 RELKEELKELEAEL-------LLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEE--- 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 666 vvpgRKNFLHLLEDSEEATKRAQEKAFERIRILEEDFAKARSEVIAIRSERDKLAMEANFAREKLEGIMKESERKREEMN 745
Cdd:COG1196 286 ----AQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELA 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 746 SVLARNIEFSQLIIDHQRKLRESSESLHAAEEISRKLSMEVSVLKQEKELLSNAEKRASDEVSALSQRVYRLQATLDTVQ 825
Cdd:COG1196 362 EAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 826 STEEVREETRAAERRKQEEHIKQLQREWAEAKKELQEERSNARDFTSDRNQTLNNAVMQVEEMGKELANALKAVSVAESR 905
Cdd:COG1196 442 EALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRG 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 906 ASVAEARLSDLEKKIRSSDPKTLDMDSGGIVSLSDKEAALVIILDVVHKIQagfrigsamsielRTAKEEIEKLRGEVES 985
Cdd:COG1196 522 LAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAG-------------RATFLPLDKIRARAAL 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 986 SKSHMLQYKSIAQVNETALKQMESAHENFRLEAEKRQRSLEAELVSLRERVSELENDCIQKSEQLATAAAGKEDALLSAS 1065
Cdd:COG1196 589 AAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRR 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1066 AEIASLREENLVKKSQIEAMNIQMSTLKNDLETEHEKWRVAQRNYERQVILLSETIQELTKTSQALAALQEEASELRKLA 1145
Cdd:COG1196 669 ELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELL 748
|
570 580
....*....|....*....|...
gi 334184013 1146 DARGIENSELNAKWSEEKLMLEQ 1168
Cdd:COG1196 749 EEEALEELPEPPDLEELERELER 771
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
680-1202 |
6.10e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.04 E-value: 6.10e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 680 SEEATKRAQEKAFERIRILEEDFAKARSEVIAIRSERDKLAMEANFAREKLEGIMKESERKREEMNSVLARNIEFSQLII 759
Cdd:COG1196 219 KEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELA 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 760 DHQRKLRESSESLHAAEEISRKLSMEVSVLKQEKELLSNAEKRASDEVSALSQRVYRLQATLDTVQSTEEVREETRAAER 839
Cdd:COG1196 299 RLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 840 RKQEEHIKQLQREWAEAKKELQEERSNARdftsdRNQTLNNAVMQVEEMGKELANALKAVSVAESRASVAEARLSDLEKK 919
Cdd:COG1196 379 EELEELAEELLEALRAAAELAAQLEELEE-----AEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAE 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 920 IRSSDPKTLDMDSGGIVSLSDKEAALVIILDVVHKIQAgfrigsamsiELRTAKEEIEKLRGEVESSKShmlqyksiAQV 999
Cdd:COG1196 454 LEEEEEALLELLAELLEEAALLEAALAELLEELAEAAA----------RLLLLLEAEADYEGFLEGVKA--------ALL 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1000 NETALKQMESAHENFRLEAEKRQRSLEAELVSLRERVSELENDCIQKSEQLATAAAGKEDALLSASAEIASLREENLVKK 1079
Cdd:COG1196 516 LAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARG 595
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1080 SQIEAMNIQMSTLK-------NDLETEHEKWRVAQRNYERQVIlLSETIQELTKTSQALAALQEEASELRKLADARGIEN 1152
Cdd:COG1196 596 AIGAAVDLVASDLReadaryyVLGDTLLGRTLVAARLEAALRR-AVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAAL 674
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 334184013 1153 SELNAKWSEEKLMLEQQKNLAEKKYHELNEQNKLLHSRLEAKHLNSAEKN 1202
Cdd:COG1196 675 LEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEE 724
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1017-1583 |
6.36e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 68.24 E-value: 6.36e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1017 EAEKRQRSLEAELVSLRERVSELENDciQKSEQLATAAAGKEDALLSASAEiaSLREENLVKKSQIEAMNIQMSTLKNDL 1096
Cdd:PTZ00121 1198 DARKAEAARKAEEERKAEEARKAEDA--KKAEAVKKAEEAKKDAEEAKKAE--EERNNEEIRKFEEARMAHFARRQAAIK 1273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1097 ETEHEKWRVAQRNYERQVILLSETIQELTKTSQALAALQE--EASELRKLADARGIENSELNAKWSEEKLMLEQQKNLAE 1174
Cdd:PTZ00121 1274 AEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEakKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAE 1353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1175 KKYHELNEQNKllhsRLEAKHLNSAEKNSRSGTISSGSTDSDHLEDSGlQRVVHYLRRTKEIAETEISLMRQEKLRLQSQ 1254
Cdd:PTZ00121 1354 AAADEAEAAEE----KAEAAEKKKEEAKKKADAAKKKAEEKKKADEAK-KKAEEDKKKADELKKAAAAKKKADEAKKKAE 1428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1255 ----LESALKMAESARGSLTAERASTRASLLTDDGIKSLQLQVSEMNLLRESNMQLREENKHNFEKCQEMREVAQKARME 1330
Cdd:PTZ00121 1429 ekkkADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEA 1508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1331 SENFENLLKTKQTeldlcmKEMEKLRMETDlhKKRVDELRETyRNIDIADYNRLKDEVRQLEEKLKAKDAH-AEDCKKVL 1409
Cdd:PTZ00121 1509 KKKADEAKKAEEA------KKADEAKKAEE--AKKADEAKKA-EEKKKADELKKAEELKKAEEKKKAEEAKkAEEDKNMA 1579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1410 LEKQNKISLLEKELTNCKKDLSEREKRLDDAQQAQATMQ----SEFNKQKQELEKNKKIHYTLNMTKRKYE---KEKDEL 1482
Cdd:PTZ00121 1580 LRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAkikaEELKKAEEEKKKVEQLKKKEAEEKKKAEelkKAEEEN 1659
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1483 SKQNQSLAKQLEEAK---EEAGKRTTTDAVVEQSVKEREEKEKRIQILDKYVHQLK-----------------DEVRKKT 1542
Cdd:PTZ00121 1660 KIKAAEEAKKAEEDKkkaEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKkkaeelkkaeeenkikaEEAKKEA 1739
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 334184013 1543 EDLKKKDEELTKERSERKSVE---KEVGDSLTKIKKEKTKVDEE 1583
Cdd:PTZ00121 1740 EEDKKKAEEAKKDEEEKKKIAhlkKEEEKKAEEIRKEKEAVIEE 1783
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1332-1612 |
2.23e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 66.24 E-value: 2.23e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1332 ENFENLLKTKQTELDLCMKEMEKLRMETDLHKKRVDELRETYRNIdIADYNRLKDEVRQLEEKLKAKDAHAEDCKKV--- 1408
Cdd:PRK03918 161 ENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEV-LREINEISSELPELREELEKLEKEVKELEELkee 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1409 LLEKQNKISLLEKELTNCKKDLSEREKRLDDAQQAQATMQsEFNKQKQELEKNKKIHYTLNMTKRKYEKEKDELSKQNQS 1488
Cdd:PRK03918 240 IEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELE-EKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSR 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1489 LAKQLEEAKEEAGKRTTTDAVVEQSVKEREEKEKRIQILDKYVHQLKDEVRKKT--EDLKKKDEELTKERSERKsvekev 1566
Cdd:PRK03918 319 LEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEelERLKKRLTGLTPEKLEKE------ 392
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 334184013 1567 gdsLTKIKKEKTKVDEELAKLERYQTALTHLSEELEK----LKHADGNLP 1612
Cdd:PRK03918 393 ---LEELEKAKEEIEEEISKITARIGELKKEIKELKKaieeLKKAKGKCP 439
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1182-2023 |
3.42e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 65.93 E-value: 3.42e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1182 EQNKLLHSRLEAKHLNSAEKNSRSGTISSGSTDSDHLEDSGLQRVVHYLRRTKEIAETEISLMRQEKLRLQSQlesalKM 1261
Cdd:PTZ00121 1085 EDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIA-----RK 1159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1262 AESARGSLTAERASTRASLltDDGIKSLQLQVSEMNLLRESNMQLREENKH-NFEKCQEMREVAQKARMESENFENLLKT 1340
Cdd:PTZ00121 1160 AEDARKAEEARKAEDAKKA--EAARKAEEVRKAEELRKAEDARKAEAARKAeEERKAEEARKAEDAKKAEAVKKAEEAKK 1237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1341 KQTEldlcMKEMEKLRMETDLHKKRVDELRETYRNIDI--ADYNRLKDEVRQLEEKLKAKDAH-AEDCKKV-----LLEK 1412
Cdd:PTZ00121 1238 DAEE----AKKAEEERNNEEIRKFEEARMAHFARRQAAikAEEARKADELKKAEEKKKADEAKkAEEKKKAdeakkKAEE 1313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1413 QNKISLLEKELTNCKKDLSEREKRLDDAQQAQATMQSEFNKQKQELEKNKKihytlnmTKRKYEKEKDELSKQNQSLAKQ 1492
Cdd:PTZ00121 1314 AKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE-------KAEAAEKKKEEAKKKADAAKKK 1386
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1493 LEEAK--EEAGKRTTTDAVVEQSVKEREEKEKRIQILDKyvhqlKDEVRKKTEDLKKKDEELTK-ERSERKSVEKEVGDS 1569
Cdd:PTZ00121 1387 AEEKKkaDEAKKKAEEDKKKADELKKAAAAKKKADEAKK-----KAEEKKKADEAKKKAEEAKKaDEAKKKAEEAKKAEE 1461
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1570 LTKIKKEKTKVDEELAKLERYQTALTHLSEELEKLKHADgnlpegtsavqvlsgsilndqaaayvSAVEYFERVARSIAS 1649
Cdd:PTZ00121 1462 AKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKAD--------------------------EAKKAAEAKKKADEA 1515
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1650 NSQVSTKPTDMVTEPSSGIPAAEPSTMTRVPSSTPLIKSpvattQQLPKVasdnKEKRLISQKPSTEFRRPSGRRivRPQ 1729
Cdd:PTZ00121 1516 KKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKA-----EELKKA----EEKKKAEEAKKAEEDKNMALR--KAE 1584
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1730 LVKPEESPKVDVDMPEAEGTGDEGKQPAAHEPESQVTTSVRPVQTLVRKRQADSLVSEPQQDSLTQGETSSEIAPPASKK 1809
Cdd:PTZ00121 1585 EAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAA 1664
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1810 AKGSESHPDTSEGENLAKEpaidelmdattttdgDNEETEAENAEEKTEEyvEAQQDNEADEPVEESPTETETIPTEEES 1889
Cdd:PTZ00121 1665 EEAKKAEEDKKKAEEAKKA---------------EEDEKKAAEALKKEAE--EAKKAEELKKKEAEEKKKAEELKKAEEE 1727
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1890 RDQ-----TEEENQEPLTDMESDKEEGELDLDTLEDLEEGTDVASMMRSPE---KEEVQPETLATPTQSPSRMETAMEEA 1961
Cdd:PTZ00121 1728 NKIkaeeaKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEaviEEELDEEDEKRRMEVDKKIKDIFDNF 1807
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 334184013 1962 ETTIE-----TPVEDDKTDEGGDAAEEAADIPNNANDQQEAPETDIKPETSAATTSPVSTAPTTSST 2023
Cdd:PTZ00121 1808 ANIIEggkegNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEK 1874
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
411-1170 |
3.72e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.46 E-value: 3.72e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 411 WSLAKIYEKYQEAVDAMRHEQLGRKEAEMILQRVLSELEEKAGFIQEERGEYERVVEAYCLVNQKLQDSVSEQSNMEKFI 490
Cdd:TIGR02168 225 LELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQK 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 491 MELKADLRRRERENTLLQKDISDLQKQVTILLKECRDVQLRCGAAR---DDDEDDYPLLSDVEMEMESEADKIISEHLLK 567
Cdd:TIGR02168 305 QILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKeelESLEAELEELEAELEELESRLEELEEQLETL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 568 FKDINGLVEQNVKLRNLVRSLSEQIESRETELKETFEVDLKNKTDEASAKVATVLKRAEEQGQMIESLHTSVAMYKRLYE 647
Cdd:TIGR02168 385 RSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALE 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 648 EEQKLHSSDSRSSDLSpavvpgrknflhlleDSEEATKRAQEKAFERIRILEEDFAKARSEVIAIRSER--------DKL 719
Cdd:TIGR02168 465 ELREELEEAEQALDAA---------------ERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLsgilgvlsELI 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 720 AMEANFAREKLEGImkeserkREEMNSVLARNIEFSQLIIDHQRKlresseslhaaEEISRKLSMEVSVLKQEKELLSNA 799
Cdd:TIGR02168 530 SVDEGYEAAIEAAL-------GGRLQAVVVENLNAAKKAIAFLKQ-----------NELGRVTFLPLDSIKGTEIQGNDR 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 800 EKRASDE--VSALSQRVYR-------LQATLDTVQSTEEVREETRAAERRKQEEHIKQLQREWAEAKKELQEERSNARDF 870
Cdd:TIGR02168 592 EILKNIEgfLGVAKDLVKFdpklrkaLSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSS 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 871 TSDRNQTLNNAVMQVEEMGKELANALKAVSVAESRASVAEARLSDLEKKIRSSDPKtldmdsggivsLSDKEAALVIILD 950
Cdd:TIGR02168 672 ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQ-----------ISALRKDLARLEA 740
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 951 vvhKIQAGFRIGSAMSIELRTAKEEIEKLRGEVESSKSHMLQYKSIAQVNETALKQMESAHENFRleaeKRQRSLEAELV 1030
Cdd:TIGR02168 741 ---EVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR----EALDELRAELT 813
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1031 SLRERVSELENDCiqksEQLATAAAGKEDALLSASAEIASLREenlvkksQIEAMNIQMSTLKNDLETEHEKWRVAQRNY 1110
Cdd:TIGR02168 814 LLNEEAANLRERL----ESLERRIAATERRLEDLEEQIEELSE-------DIESLAAEIEELEELIEELESELEALLNER 882
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1111 ERQVILLSETIQELTKTSQALAALQEEASELRKLADARGIENSELNAKWSEEKLMLEQQK 1170
Cdd:TIGR02168 883 ASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQ 942
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1321-1605 |
4.20e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.34 E-value: 4.20e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1321 REVAQKARMesenfenlLKTKQTELDLCMK--EMEKLRMETDLHKKRVDELRETYRNIdIADYNRLKDEVRQLEEKLKAK 1398
Cdd:COG1196 209 AEKAERYRE--------LKEELKELEAELLllKLRELEAELEELEAELEELEAELEEL-EAELAELEAELEELRLELEEL 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1399 DAHAEDCKKVLLEKQNKISLLEKELTNCKKDLSEREKRLDDAQQAQATMQSEFNKQKQELE----KNKKIHYTLNMTKRK 1474
Cdd:COG1196 280 ELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEeleeELEEAEEELEEAEAE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1475 YEKEKDELSKQNQSLAKQLEEAKEEAGKRTTTDAVVEQSVKEREEKEKRIQILDKYVHQLKDEVRKKTEDLKKKDEELTK 1554
Cdd:COG1196 360 LAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEE 439
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 334184013 1555 ERSERKSVEKEVGDSLTKIKKEKTKVDEELAKLERYQTALTHLSEELEKLK 1605
Cdd:COG1196 440 EEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAA 490
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
22-855 |
4.48e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.46 E-value: 4.48e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 22 AERADEYiRKIYAELDSVRAKADAASITAeqtcslLEQKYLSLSQDFSSLESQNAKLQSDFDDRLAELAQSQAQKHQLHL 101
Cdd:TIGR02168 209 AEKAERY-KELKAELRELELALLVLRLEE------LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEE 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 102 QSIEKDGEVERMSTEMSELHKSKRQLMELLEQKDAEISEKNSTIKSYLDKIVKLTDTSSEKEARLAEATAELARSQAMCS 181
Cdd:TIGR02168 282 EIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELE 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 182 RLSQEKELTERHAKWLDEELTAKVDSYAELRRRHSDLESE---MSAKLVDVEKNYIECSSSLNWHKERLRELETKigSLQ 258
Cdd:TIGR02168 362 ELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEierLEARLERLEDRRERLQQEIEELLKKLEEAELK--ELQ 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 259 EDLSSCKDAATTTEEQY---TAELFTANKLVDLYKESSEEWSRKAGELEGVIKALEARLSQVESSYKERldKEVSTKQLL 335
Cdd:TIGR02168 440 AELEELEEELEELQEELerlEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGV--KALLKNQSG 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 336 EKENGDLKQKLEKCEAEIEKTRKT---DELNLIPFSNFTRRVD--------NSGTSNMIEESQAVISKvPAGVSGTALAA 404
Cdd:TIGR02168 518 LSGILGVLSELISVDEGYEAAIEAalgGRLQAVVVENLNAAKKaiaflkqnELGRVTFLPLDSIKGTE-IQGNDREILKN 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 405 SLLRDGW--SLAKIYEKYQEAVDAMrheqLGRkeaemilQRVLSELEEKAGFIQEERGEYERVVEAYCLVNQK---LQDS 479
Cdd:TIGR02168 597 IEGFLGVakDLVKFDPKLRKALSYL----LGG-------VLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGgviTGGS 665
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 480 VSEQSNmekfIMELKADLRRRERENTLLQKDISDLQKQVTILLKECRDVQLRCGAARDDDEDDYPLLSDVEMEMESEAdk 559
Cdd:TIGR02168 666 AKTNSS----ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLE-- 739
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 560 iisehllkfKDINGLVEQNVKLRNLVRSLSEQIESRETELKETFEvdlknKTDEASAKVATVlkrAEEQGQMIESLHTSV 639
Cdd:TIGR02168 740 ---------AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEE-----ELAEAEAEIEEL---EAQIEQLKEELKALR 802
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 640 AMYKRLYEEEQKLhssdsrssdlspavvpgRKNFLHLLEDSEEATKRAQEKAfERIRILEEDFAKARSEVIAIRSERDKL 719
Cdd:TIGR02168 803 EALDELRAELTLL-----------------NEEAANLRERLESLERRIAATE-RRLEDLEEQIEELSEDIESLAAEIEEL 864
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 720 AMEANFAREKLEGIMKESERKREEMNSVLARNIEFSQLIIDHQRKLRESSESLHAAEEISRKLSMEVSVLKQEkelLSNA 799
Cdd:TIGR02168 865 EELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVR---IDNL 941
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*.
gi 334184013 800 EKRASDEVsalsqrvyrlQATLDTVqsteEVREETRAAERRKQEEHIKQLQREWAE 855
Cdd:TIGR02168 942 QERLSEEY----------SLTLEEA----EALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1088-1611 |
9.08e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 63.89 E-value: 9.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1088 QMSTLKNDLETEHEKWRVAQRNY---ERQVILLSETIQEL-TKTSQALAALQEEASELRKLADARGIENSELNAKwSEEK 1163
Cdd:TIGR04523 41 KLKTIKNELKNKEKELKNLDKNLnkdEEKINNSNNKIKILeQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKND-KEQK 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1164 LMLEQQKNLAEKKYHELNEQNKLLHSRLEAKHLNSAEKNSRSGTISSgstdsdhlEDSGLQRVVHYLRRTKEIAETEISL 1243
Cdd:TIGR04523 120 NKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKK--------QKEELENELNLLEKEKLNIQKNIDK 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1244 MRQEKLRLQSQLeSALKMAESARGSLTAERASTRA--SLLTDDGIK---SLQLQVSEMNLLRESNMQLREENKHNFEKCQ 1318
Cdd:TIGR04523 192 IKNKLLKLELLL-SNLKKKIQKNKSLESQISELKKqnNQLKDNIEKkqqEINEKTTEISNTQTQLNQLKDEQNKIKKQLS 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1319 EMREVAQKARMESENFENLLKTKQTELDLCMKEMEKlrmetDLHKKRVDELRETYRNIDIAD---------YNRLKDEVR 1389
Cdd:TIGR04523 271 EKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQ-----DWNKELKSELKNQEKKLEEIQnqisqnnkiISQLNEQIS 345
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1390 QLEEKLKAKDAHAEDCKKVLLEKQNKISLLEKEltnckkdlseREKRLDDAQQaqatMQSEFNKQKQELEKNKKIHYTLN 1469
Cdd:TIGR04523 346 QLKKELTNSESENSEKQRELEEKQNEIEKLKKE----------NQSYKQEIKN----LESQINDLESKIQNQEKLNQQKD 411
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1470 MTKRKYEKEKDELSKQNQSLAKQLEEAKEEAGKRTTTDAVVEQSVKE----REEKEKRIQILDKYVHQLKDEVRKKTEDL 1545
Cdd:TIGR04523 412 EQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNldntRESLETQLKVLSRSINKIKQNLEQKQKEL 491
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1546 KKKDEELTKERSERKSVEKEVGD-------SLTKIKK---EKTKVDEELAKLER-------------YQTALTHLSEELE 1602
Cdd:TIGR04523 492 KSKEKELKKLNEEKKELEEKVKDltkkissLKEKIEKlesEKKEKESKISDLEDelnkddfelkkenLEKEIDEKNKEIE 571
|
....*....
gi 334184013 1603 KLKHADGNL 1611
Cdd:TIGR04523 572 ELKQTQKSL 580
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1017-1605 |
1.15e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 63.93 E-value: 1.15e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1017 EAEKRQRSLEAELVSLRERVSELENDCIQKSEQLATAAAGKEdallsasaEIASLREEnlvkksqIEAMNIQMSTLKNDL 1096
Cdd:PRK03918 190 NIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVK--------ELEELKEE-------IEELEKELESLEGSK 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1097 ETEHEKwrvaQRNYERQVILLSETIQELTKTSQALAALQEEASELRKLADARGIENSELN------AKWSEEKLMLEQQK 1170
Cdd:PRK03918 255 RKLEEK----IRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELReiekrlSRLEEEINGIEERI 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1171 NLAEKKYHELNEQNKLLH------SRLEAKHLNSAEKNSRSGTISSGSTDSDHLEDSGLQRVVHYLRRTKEIAETEISLM 1244
Cdd:PRK03918 331 KELEEKEERLEELKKKLKelekrlEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKI 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1245 RQEKLRLQS---QLESALKMAESARGsltaeRASTRASLLTDDGIKSLqlqvseMNLLRESNMQLREENKHNFEKCQEMR 1321
Cdd:PRK03918 411 TARIGELKKeikELKKAIEELKKAKG-----KCPVCGRELTEEHRKEL------LEEYTAELKRIEKELKEIEEKERKLR 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1322 EVAQKARMESENFENLLKTKQTeldlcMKEMEKLrmETDLHKKRVDELRETYRnidiaDYNRLKDEVRQLEEKLKAkdah 1401
Cdd:PRK03918 480 KELRELEKVLKKESELIKLKEL-----AEQLKEL--EEKLKKYNLEELEKKAE-----EYEKLKEKLIKLKGEIKS---- 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1402 AEDCKKVLLEKQNKISLLEKELTNCKKDLSEREKRLddaQQAQATMQSEFNKQKQELEKNKKIHYTLNMTKRKYEKEKDE 1481
Cdd:PRK03918 544 LKKELEKLEELKKKLAELEKKLDELEEELAELLKEL---EELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKE 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1482 LSKqnqsLAKQLEEAKEEAGKrttTDAVVEQSVKEREEKEKriqildKYVHQLKDEVRKKTEDLKKKDEELTKERSERKS 1561
Cdd:PRK03918 621 LKK----LEEELDKAFEELAE---TEKRLEELRKELEELEK------KYSEEEYEELREEYLELSRELAGLRAELEELEK 687
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 334184013 1562 VEKEVGDSLTKIKKEKTKVDEELAKLERYQTALTHLSEELEKLK 1605
Cdd:PRK03918 688 RREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREKVK 731
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1367-1613 |
1.88e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.15 E-value: 1.88e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1367 DELRETYRNIDIADYNRLKDEVRQLEEKLKAKDAHAEDCKKVLLEKQNKISLLEKELTNCKKDLSEREKRLDDAQQAQAT 1446
Cdd:TIGR02168 220 AELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1447 MQSEFNKQKQELEKNKKIHYTLNMTKRKYEKEKDELSKQNQSLAKQLEEAKEEagkRTTTDAVVEQSVKEREEKEKRIQI 1526
Cdd:TIGR02168 300 LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEE---LESLEAELEELEAELEELESRLEE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1527 LDKYVHQLKDEVRKKTEDLKKKDEELTKERSERKSVEKEVGDSLTKIKKEKTKVDEelAKLERYQTALTHLSEELEKLKH 1606
Cdd:TIGR02168 377 LEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEE--AELKELQAELEELEEELEELQE 454
|
....*..
gi 334184013 1607 ADGNLPE 1613
Cdd:TIGR02168 455 ELERLEE 461
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
715-1556 |
2.48e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.77 E-value: 2.48e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 715 ERDKLAMEANFAREKLEGIMKESERKREEMNSvLARNIEFSQLIID-HQRKLRESSESLHAAEEISRKLSMEVSVLKQEK 793
Cdd:TIGR02168 226 ELALLVLRLEELREELEELQEELKEAEEELEE-LTAELQELEEKLEeLRLEVSELEEEIEELQKELYALANEISRLEQQK 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 794 ELLSNAEKRASDEVSALSQRVYRLQATLDTVQ---STEEVREETRAAERRKQEEHIKQLQREWAEAKKELQEERSNARDF 870
Cdd:TIGR02168 305 QILRERLANLERQLEELEAQLEELESKLDELAeelAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 871 TSDRNQTLNnavmQVEEMGKELANALKAVSVAESRASVAEARLSDLEKKIRSSDPKTLDMDsggivsLSDKEAALviild 950
Cdd:TIGR02168 385 RSKVAQLEL----QIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAE------LEELEEEL----- 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 951 vvHKIQAGFRigsAMSIELRTAKEEIEKLRGEVESSKSHMLQYKSIAqvneTALKQMESAHENFRlEAEKRQRSLEAELV 1030
Cdd:TIGR02168 450 --EELQEELE---RLEEALEELREELEEAEQALDAAERELAQLQARL----DSLERLQENLEGFS-EGVKALLKNQSGLS 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1031 SLRERVSELENdCIQKSEQ-LATAAAGKEDALL-----SASAEIASLREENLVKKSQIEAMNIQMSTLKNDLetehekwR 1104
Cdd:TIGR02168 520 GILGVLSELIS-VDEGYEAaIEAALGGRLQAVVvenlnAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGND-------R 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1105 VAQRNYERQVILLSETIQELTKTSQALAAL---------QEEASELRKLADARG----IENSELNAKWS-------EEKL 1164
Cdd:TIGR02168 592 EILKNIEGFLGVAKDLVKFDPKLRKALSYLlggvlvvddLDNALELAKKLRPGYrivtLDGDLVRPGGVitggsakTNSS 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1165 MLEQQKNLAEkkyheLNEQNKLLHSRLEAKH--LNSAEKnsrsgtissgstdsdhlEDSGLQRVVHYLRRTKEIAETEIS 1242
Cdd:TIGR02168 672 ILERRREIEE-----LEEKIEELEEKIAELEkaLAELRK-----------------ELEELEEELEQLRKELEELSRQIS 729
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1243 LMRQEKLRLQSQLESALKMAESARGSLTAerastraslltddgikslqlqvsemnlLRESNMQLREENKHNFEKCQEMRE 1322
Cdd:TIGR02168 730 ALRKDLARLEAEVEQLEERIAQLSKELTE---------------------------LEAEIEELEERLEEAEEELAEAEA 782
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1323 VAQKARMESENFENLLKTKQTELDlcmkemeKLRMETDLHKKRVDELRETYRNIDiADYNRLKDEVRQLEEKLKAKDAHA 1402
Cdd:TIGR02168 783 EIEELEAQIEQLKEELKALREALD-------ELRAELTLLNEEAANLRERLESLE-RRIAATERRLEDLEEQIEELSEDI 854
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1403 EDCKKVLLEKQNKISLLEKELTNCKK-------DLSEREKRLDDAQQAQATMQSEFNKQKQELEKNKKIHYTLNMTKRKY 1475
Cdd:TIGR02168 855 ESLAAEIEELEELIEELESELEALLNerasleeALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGL 934
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1476 EKEKDELSKQ-NQSLAKQLEEAKEEAGKRTTTDAVVEQSVKEREEKEKRIQILDKYVHQLKDEVRKKTEDLKKKDEELTK 1554
Cdd:TIGR02168 935 EVRIDNLQERlSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTE 1014
|
..
gi 334184013 1555 ER 1556
Cdd:TIGR02168 1015 AK 1016
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1386-1603 |
2.53e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 61.70 E-value: 2.53e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1386 DEVRQLEEKLKAKDAHAEDCKKVLLEKQNKISLLEKELTNCKKDLSEREKRLDDAQQAQATMQSEFNKQKQELEKNKKih 1465
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA-- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1466 yTLNMTKRKYEKEKDELSKQNQSLAKQLEEAKEEAGKRTTTDAVVEQSVKEREEKEKRIQILDKYVHQLKDEVRKKTEDL 1545
Cdd:COG4942 98 -ELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 334184013 1546 KKKDEELTKERSERKSVEKEVGDSLTKIKKEKTKVDEELAKLERYQTALTHLSEELEK 1603
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
161-931 |
2.70e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.77 E-value: 2.70e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 161 EKEARLAEATAELARSQAMCSRLSQEKELTERHAKwldeeltaKVDSYAELRRRHSDLESEMSAK-LVDVEKNYIECSSS 239
Cdd:TIGR02168 176 ETERKLERTRENLDRLEDILNELERQLKSLERQAE--------KAERYKELKAELRELELALLVLrLEELREELEELQEE 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 240 LNWHKERLRELETKIGSLQEDLSSCKDA---ATTTEEQYTAELFTANKLVDLYKESSEEWSRKAGELEGVIKALEARLSQ 316
Cdd:TIGR02168 248 LKEAEEELEELTAELQELEEKLEELRLEvseLEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 317 VESSyKERLDKEVstkQLLEKENGDLKQKLEKCEAEIEKTRKTDElnlipfsNFTRRVDNSgTSNMIEESQAVISKVPAG 396
Cdd:TIGR02168 328 LESK-LDELAEEL---AELEEKLEELKEELESLEAELEELEAELE-------ELESRLEEL-EEQLETLRSKVAQLELQI 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 397 VSGTALAASLLRDGWSLAKIYEKYQEavdamRHEQLGRKEAEMILQRVLSELEEKAGFIQEERGEYERVVEAYCLVNQKL 476
Cdd:TIGR02168 396 ASLNNEIERLEARLERLEDRRERLQQ-----EIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREEL 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 477 QDSVSEQSNMEKFIMELKADLRRRERentlLQKDISDLQKQVTILLKEcrdvqlrcgaaRDDDEDDYPLLSD---VEMEM 553
Cdd:TIGR02168 471 EEAEQALDAAERELAQLQARLDSLER----LQENLEGFSEGVKALLKN-----------QSGLSGILGVLSElisVDEGY 535
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 554 ESEADKIISEHLLK---------FKDINGLVEQNVKLRN---LVRSLSEQIESRETELKETFE--VDLKNKTDEASAKVA 619
Cdd:TIGR02168 536 EAAIEAALGGRLQAvvvenlnaaKKAIAFLKQNELGRVTflpLDSIKGTEIQGNDREILKNIEgfLGVAKDLVKFDPKLR 615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 620 TVLKRAEEQGQMIESLHTSVAMYKRLYEEEqKLHSSDSRSSDLSPAVVPGRKNFlhllEDSEEATKRAQEKAFERIRILE 699
Cdd:TIGR02168 616 KALSYLLGGVLVVDDLDNALELAKKLRPGY-RIVTLDGDLVRPGGVITGGSAKT----NSSILERRREIEELEEKIEELE 690
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 700 EDFAKARSEVIAIRSERDKLAMEANFAREKLEGIMKESERKREEMNSVLARNIEFSQLIIDHQRKLRESSESLHAAEEIS 779
Cdd:TIGR02168 691 EKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERL 770
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 780 RKLSMEVSVLKQEKELLSNAEKRASDEVSALSQRVYRLQATLDTVQSTEEVREETRAAERRKQEEHIKQLQrEWAEAKKE 859
Cdd:TIGR02168 771 EEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLE-DLEEQIEE 849
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 334184013 860 LQEERSNArdftsdrNQTLNNAVMQVEEMGKELANALKAVSVAESRASVAEARLSDLEKKIRSSDPKTLDMD 931
Cdd:TIGR02168 850 LSEDIESL-------AAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELR 914
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
590-1284 |
3.12e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.38 E-value: 3.12e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 590 EQIESRETELKETFEvDLKNKTDEASAKVATVLKRAEEQGQMIESLHTSVAMYK-RLYEEEQKLHSSDSRSSDLSPAVVP 668
Cdd:TIGR02168 270 EELRLEVSELEEEIE-ELQKELYALANEISRLEQQKQILRERLANLERQLEELEaQLEELESKLDELAEELAELEEKLEE 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 669 GRKNFLHLLEDSEEATKRAQEkAFERIRILEEDFAKARSEVIAIRSERDKLAMEANFAREKLEGIMKESERKREEMNSVL 748
Cdd:TIGR02168 349 LKEELESLEAELEELEAELEE-LESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELL 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 749 ARNIEfsQLIIDHQRKLRESSESLHAAEEISRKLSMEVSVLKQEKELLSNAEKRASDEVSALSQRVYRLQATLDTVQS-T 827
Cdd:TIGR02168 428 KKLEE--AELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGfS 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 828 EEVREETRAAERRKQeehIKQLQREWAEAKKELQEERSNARdftsdrNQTLNNAVMQVEEMGKELANALKavSVAESRAS 907
Cdd:TIGR02168 506 EGVKALLKNQSGLSG---ILGVLSELISVDEGYEAAIEAAL------GGRLQAVVVENLNAAKKAIAFLK--QNELGRVT 574
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 908 VAEARLSDlEKKIRSSDPKTLDMDSGGIVSLSDK-------EAALVIILD---VVHKIQAGFRIGSAMSIELRTAKEEIE 977
Cdd:TIGR02168 575 FLPLDSIK-GTEIQGNDREILKNIEGFLGVAKDLvkfdpklRKALSYLLGgvlVVDDLDNALELAKKLRPGYRIVTLDGD 653
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 978 KLR------GEVESSKSHMLQYKSIAQVNETALKQMESAHEnfrlEAEKRQRSLEAELVSLRERVSELENDCIQKSEQLA 1051
Cdd:TIGR02168 654 LVRpggvitGGSAKTNSSILERRREIEELEEKIEELEEKIA----ELEKALAELRKELEELEEELEQLRKELEELSRQIS 729
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1052 TAAAGkedaLLSASAEIASLREENLVKKSQIEAMNIQMSTLKNDLETEHEKWRVAQRNYERQVILLSETIQELTKTSQAL 1131
Cdd:TIGR02168 730 ALRKD----LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL 805
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1132 AALQEEASELR-KLADARGIENSELNAKWSEEKLMLEQQKNLAEKKY------HELNEQNKLLHSRLEAKHLNSAEKNSR 1204
Cdd:TIGR02168 806 DELRAELTLLNeEAANLRERLESLERRIAATERRLEDLEEQIEELSEdieslaAEIEELEELIEELESELEALLNERASL 885
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1205 SGTISSGSTDSDHLEDS--GLQRVVHYLRRTKEIAETEISLMRQEKLRLQSQLESALKMAeSARGSLTAERASTRASLLT 1282
Cdd:TIGR02168 886 EEALALLRSELEELSEElrELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL-SEEYSLTLEEAEALENKIE 964
|
..
gi 334184013 1283 DD 1284
Cdd:TIGR02168 965 DD 966
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
243-1041 |
6.72e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.23 E-value: 6.72e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 243 HKERLRELETKIGSLQEDLSSCKDAATTTEEQ----------------YTAELFTANK--LVDLYKESSEEWSR---KAG 301
Cdd:TIGR02168 170 YKERRKETERKLERTRENLDRLEDILNELERQlkslerqaekaerykeLKAELRELELalLVLRLEELREELEElqeELK 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 302 ELEGVIKALEARLSQVESSYkERLDKEVS----TKQLLEKENGDLKQKLEKCEAEIEKTR--------KTDELNLIPFSN 369
Cdd:TIGR02168 250 EAEEELEELTAELQELEEKL-EELRLEVSeleeEIEELQKELYALANEISRLEQQKQILRerlanlerQLEELEAQLEEL 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 370 FTRRVDNSGTSNMIEESQAVISKVPAGVSgtALAASLLRDGWSLAKIYEKYQEAVDAMRHEQLGRKEAEMILQRVLSELE 449
Cdd:TIGR02168 329 ESKLDELAEELAELEEKLEELKEELESLE--AELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLE 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 450 EKAGFIQEERGEYERVVEAYC--LVNQKLQDSVSEQSNMEKFIMELKADLRRRERENTLLQKDISDLQKQVTILLKECRD 527
Cdd:TIGR02168 407 ARLERLEDRRERLQQEIEELLkkLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQ 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 528 VQLRCGAARDDDEddypllsdvEMEMESEADKIISEHLLKFKDINGLVEQNVKLRN-----LVRSLSEQIES----RETE 598
Cdd:TIGR02168 487 LQARLDSLERLQE---------NLEGFSEGVKALLKNQSGLSGILGVLSELISVDEgyeaaIEAALGGRLQAvvveNLNA 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 599 LKETFEVDLKNKTDEASAKVATVLKRAEEQGQMIESLHTSvamykrlyEEEQKLHSSDSRSSDLSPAVVPGRKNFLHLLE 678
Cdd:TIGR02168 558 AKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNI--------EGFLGVAKDLVKFDPKLRKALSYLLGGVLVVD 629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 679 DSEEAT-KRAQEKAFERIRILEEDFAKARSEVIAIRSERDKLAMEANFAREKLEGIMKESERK----REEMNSVLARNIE 753
Cdd:TIGR02168 630 DLDNALeLAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKiaelEKALAELRKELEE 709
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 754 FSQLIIDHQRKLRESSESLHAAEEISRKLSMEVSVLKQEKELLSNAEKRASDEVSALSQRVYRLQATLDTVqsteEVREE 833
Cdd:TIGR02168 710 LEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEA----EAEIE 785
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 834 TRAAERRKQEEHIKQLQREWAEAKKELQEERSNARDFTSDRNQTLNNAVMQVEEMGkelanalkavsVAESRASVAEARL 913
Cdd:TIGR02168 786 ELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLE-----------DLEEQIEELSEDI 854
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 914 SDLEKKIRSSDpktldmdsggiVSLSDKEAALVIILDVVHKIQAGFRIG----SAMSIELRTAKEEIEKLRGEVESSKSH 989
Cdd:TIGR02168 855 ESLAAEIEELE-----------ELIEELESELEALLNERASLEEALALLrselEELSEELRELESKRSELRRELEELREK 923
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*.
gi 334184013 990 MLQYK---SIAQVNETALKQMESAHENFRLE-AEKRQRSLEAELVSLRERVSELEN 1041
Cdd:TIGR02168 924 LAQLElrlEGLEVRIDNLQERLSEEYSLTLEeAEALENKIEDDEEEARRRLKRLEN 979
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
161-920 |
7.44e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.23 E-value: 7.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 161 EKEARLAEATAELARSQAMCSRLSQEKELTERHAKWLDEELTAKVDSYAELRRRHSdlesEMSAKLVDVEKNYIEcsssl 240
Cdd:TIGR02168 222 LRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVS----ELEEEIEELQKELYA----- 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 241 nwHKERLRELETKIGSLQEDLssckDAATTTEEQYTAELFTANKLVDLYKESSEEWSRKAGELEGVIKALEARLSQVESS 320
Cdd:TIGR02168 293 --LANEISRLEQQKQILRERL----ANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAE 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 321 YKERLDKEVSTKQLLEKENGDLKQKLEkceaEIEKTRKTDELNLIPFSNFTRRVDNSGTSNMIEESQAVISKVPAGVSGT 400
Cdd:TIGR02168 367 LEELESRLEELEEQLETLRSKVAQLEL----QIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAEL 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 401 ALAASLLRDGWS-LAKIYEKYQEAVDAMRHEQLGRKEAEMILQRVLSELEEKAGFIQEERGEYERVVEaycLVNQKLQ-- 477
Cdd:TIGR02168 443 EELEEELEELQEeLERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKA---LLKNQSGls 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 478 ---DSVSEQSNM-EKFIMELKADLrrRERENTLLQKDISDLQKQVTILLKEcrDVQLRCGAARDDDEDDYPLLSDVEMEM 553
Cdd:TIGR02168 520 gilGVLSELISVdEGYEAAIEAAL--GGRLQAVVVENLNAAKKAIAFLKQN--ELGRVTFLPLDSIKGTEIQGNDREILK 595
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 554 ESEADKIISEHLLKF-----KDINGLVEQNVKLRNLVRSLSEQIESRETELKETFEVDL--------------KNKTDEA 614
Cdd:TIGR02168 596 NIEGFLGVAKDLVKFdpklrKALSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLDGDLvrpggvitggsaktNSSILER 675
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 615 SAKVATVLKRAEEQGQMIESLHTSVAMY-KRLYEEEQKLHSSDSRSSDLSPAVVPGRKNFLHLLEDSEEATKRAQEKAFE 693
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELrKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKE 755
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 694 R------IRILEEDFAKARSEVIAIRSERDKLAMEANFAREKLEGIMKESERKREEMNSVLARNIEFSQLIIDHQRKLRE 767
Cdd:TIGR02168 756 LteleaeIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAA 835
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 768 SSESLHAAEEISRKLSMEVSVLKQEKELLSNAEKRASDEVSALSQRVYRLQATLDTVQSteevREETRAAERRKQEEHIK 847
Cdd:TIGR02168 836 TERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRS----ELEELSEELRELESKRS 911
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 334184013 848 QLQREWAEAKKELQEERSNARDFTSDRNQTLNNAvmqVEEMGKELANALKAVSVAESRASVAEARLSDLEKKI 920
Cdd:TIGR02168 912 ELRRELEELREKLAQLELRLEGLEVRIDNLQERL---SEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKI 981
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
964-1529 |
8.75e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.11 E-value: 8.75e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 964 AMSIELRTAKEEIEKLRGEVESSKSHMLQYKSIAQVNETALKQMESAHENFRLEAEKRQRS----------LEAELVSLR 1033
Cdd:COG1196 229 LLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEeyellaelarLEQDIARLE 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1034 ERVSELENDCIQKSEQLATAAAGKEDALLSASAEIASLREENLVKKSQIEAMNIQMSTLKNDLETEHEKWRVAQRNYERQ 1113
Cdd:COG1196 309 ERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEEL 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1114 VILLSETIQELTKTSQALAALQEEASELRKLADARGIENSELNAKWSEEKLMLEQQKNLAEKKYHELNEQNKLLHSRLEa 1193
Cdd:COG1196 389 LEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAE- 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1194 khlnsaeknsrsgtissgstdsdhledsglqrvvhyLRRTKEIAETEISLMRQEKLRLQSQLESALKMAESARGSLTAER 1273
Cdd:COG1196 468 ------------------------------------LLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVK 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1274 ASTRASLLTDDGIKSLQLQ----VSEMNLLRESNMQLREENKHNFEKCQEMREVAQKARMESENFENLLKTKQTELDLCM 1349
Cdd:COG1196 512 AALLLAGLRGLAGAVAVLIgveaAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAA 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1350 KEMEKLRMETDLHKKRVDELRETYRNIDIADYNRLkDEVRQLEEKLKAKDAHAEDCKKVLLE----KQNKISLLEKELTN 1425
Cdd:COG1196 592 LARGAIGAAVDLVASDLREADARYYVLGDTLLGRT-LVAARLEAALRRAVTLAGRLREVTLEgeggSAGGSLTGGSRREL 670
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1426 CKKDLSEREKRLDDAQQAQATMQSEFNKQKQELEKNKKIHYTLNMTKRKYEKEKDELSKQNQSLAKQLEEAKEEAGKRTT 1505
Cdd:COG1196 671 LAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEE 750
|
570 580
....*....|....*....|....
gi 334184013 1506 TDAVVEQSVKEREEKEKRIQILDK 1529
Cdd:COG1196 751 EALEELPEPPDLEELERELERLER 774
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
703-1606 |
1.07e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.85 E-value: 1.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 703 AKARSEVIairserDKLAMEANFAREKlegimkesERKREEMNSVlARNIEFSQLIIDHQR----KLRESSESLHAAEEI 778
Cdd:TIGR02169 152 PVERRKII------DEIAGVAEFDRKK--------EKALEELEEV-EENIERLDLIIDEKRqqleRLRREREKAERYQAL 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 779 SRKL-SMEVSVLKQEKELL----SNAEKRASDEVSALSQRVYRLQATLDTVQSTEEVREETRAAERRKQEEHIKQLQREW 853
Cdd:TIGR02169 217 LKEKrEYEGYELLKEKEALerqkEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKI 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 854 AEakkeLQEERSNARDFTSDRNQtlnnavmQVEEMGKELANAlkavsvaESRASVAEARLSDLEKKIRSSDpKTLDMDSG 933
Cdd:TIGR02169 297 GE----LEAEIASLERSIAEKER-------ELEDAEERLAKL-------EAEIDKLLAEIEELEREIEEER-KRRDKLTE 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 934 GIVSLSDKEAALVIILDVVHKIQAGFRIgsamsiELRTAKEEIEKLRGEVESSKSHMLQYKSIAQVNETALKQMESAHEN 1013
Cdd:TIGR02169 358 EYAELKEELEDLRAELEEVDKEFAETRD------ELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAG 431
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1014 frleAEKRQRSLEAELVSLRERVSELEndciQKSEQLATAAAGKEDALLSASAEIASLREENLVKKSQIEAmniqmstlk 1093
Cdd:TIGR02169 432 ----IEAKINELEEEKEDKALEIKKQE----WKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAE--------- 494
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1094 ndLETEHEKWRVAQRNYERQVILLSE-------TIQELTKTSQALAALQEEASELRklADARGIENSELnakwSEEKLML 1166
Cdd:TIGR02169 495 --AEAQARASEERVRGGRAVEEVLKAsiqgvhgTVAQLGSVGERYATAIEVAAGNR--LNNVVVEDDAV----AKEAIEL 566
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1167 EQQKNLAEKKYHELNE--------------------------------------QNKLLHSRLEA--KHLNSAEKNSRSG 1206
Cdd:TIGR02169 567 LKRRKAGRATFLPLNKmrderrdlsilsedgvigfavdlvefdpkyepafkyvfGDTLVVEDIEAarRLMGKYRMVTLEG 646
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1207 TI--SSGSTDSDHLEDSGLQRVVHYLRRTKEIAETEISLMRQEKLRLQSQLESALKMAESARGSLTAERASTRAslltdd 1284
Cdd:TIGR02169 647 ELfeKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGE------ 720
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1285 gikslqlqvsemnLLRESNMQLREENKHNfEKCQEMREVAQKARMESENFENLLKTKQTELDlcmkemeklRMETDLHKK 1364
Cdd:TIGR02169 721 -------------IEKEIEQLEQEEEKLK-ERLEELEEDLSSLEQEIENVKSELKELEARIE---------ELEEDLHKL 777
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1365 RvDELRETYRNIDIADYNRLKDEVRQLEEKLKAKDAHAEDCKKVLLEKQNKISLLEKELTNCKKDLSEREKRLDDAQQAQ 1444
Cdd:TIGR02169 778 E-EALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEI 856
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1445 ATMQSEFNKQKQELEKNKKIHYTLNMTKRKYEKEKDELSKQNQSLAKQLEEAKEEAGKRTTTDAVVEQSvkeREEKEKRI 1524
Cdd:TIGR02169 857 ENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAK---LEALEEEL 933
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1525 QILDKYVHQLKDEVRKKT--EDLKKKDEELTKERSERKSVEKEVGDSLTKIKKEKTKVDEELAKLERYQTALTHLSEELE 1602
Cdd:TIGR02169 934 SEIEDPKGEDEEIPEEELslEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYE 1013
|
....
gi 334184013 1603 KLKH 1606
Cdd:TIGR02169 1014 KKKR 1017
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
696-1549 |
1.03e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 57.67 E-value: 1.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 696 RILEEDFAKARSEVIAIRSERDKLAMEANFAREKLEGI------------MKESERKREEMNSVLARNIEFSQLIID--- 760
Cdd:pfam02463 154 RRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDleelklqelklkEQAKKALEYYQLKEKLELEEEYLLYLDylk 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 761 HQRKLRESSESLHAAEEISRKLSMEVSVLKQEKELLSNAEKRASDEVSALSQRVYRLQATLDTVQSTEEVREETRA-AER 839
Cdd:pfam02463 234 LNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKvDDE 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 840 RKQEEHIKQLQREWAEAKKELQ--EERSNARDFTSDRNQTLNNAVMQVEEMGKELANALKAVSVA---ESRASVAEARLS 914
Cdd:pfam02463 314 EKLKESEKEKKKAEKELKKEKEeiEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKkklESERLSSAAKLK 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 915 DLEKKIRSSDPKTldmdsggIVSLSDKEAALVIILDVVHKIQAGFRIGSAMSIELRTAKEEIEKLRGEVESSKSHMLQYK 994
Cdd:pfam02463 394 EEELELKSEEEKE-------AQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELE 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 995 SIAQVNETALKQMESAHENfrlEAEKRQRSLEAELVSLRERVSELENDCIQKSEQLATAAAGKEDALLSASAEIASLREe 1074
Cdd:pfam02463 467 LKKSEDLLKETQLVKLQEQ---LELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYK- 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1075 nlvKKSQIEAMNIQMSTLKNDLETEHEKWRVAQRN-YERQVILLSETIQELTKTSQAL--AALQEEASELRKLADARGIE 1151
Cdd:pfam02463 543 ---VAISTAVIVEVSATADEVEERQKLVRALTELPlGARKLRLLIPKLKLPLKSIAVLeiDPILNLAQLDKATLEADEDD 619
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1152 NSELNAKWSEEKLMLEQQKNLAEKKYHELNEQNKLLHSRLEAKHLNSAEKNSRSGTISSGSTDSDHLEDSGLQRVVHYLR 1231
Cdd:pfam02463 620 KRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQL 699
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1232 RTKEIAETEISLMRQEKLRLQSQLESALKMAESARGSLTAERASTRASLLTDDGIKSLQLQVSEMNLLRESNMQLREE-- 1309
Cdd:pfam02463 700 EIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAee 779
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1310 ----NKHNFEKCQEMREVAQKARMESENFENLLKTKQTELDLCMKEMEKLRMETDLHKKRVDELRETYRNIDIADYNRLK 1385
Cdd:pfam02463 780 rektEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERL 859
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1386 DEVRQLEEKLKAKDAHAEDCKKvlLEKQNKISLLEKELTNCKKDLSEREKRLDDAQQAQATMQSEFNKQKQELEKNKKIH 1465
Cdd:pfam02463 860 EEEITKEELLQELLLKEEELEE--QKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEP 937
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1466 YTLNMTKRKYEKEKDELSKQNQSLAKQLEEAKEEAGKRtttDAVVEQSVKEREEKEKRIQILDKYVHQLKDEVRKKTEDL 1545
Cdd:pfam02463 938 EELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKV---NLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEE 1014
|
....
gi 334184013 1546 KKKD 1549
Cdd:pfam02463 1015 TCQR 1018
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
963-1551 |
1.15e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.38 E-value: 1.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 963 SAMSIELRTAKEEIEKLRGEVESSKSHMLQYKSIAQVNETALKQMESAHENFRlEAEKRQRSLEAELVSLRERVSELENd 1042
Cdd:PRK03918 210 NEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIR-ELEERIEELKKEIEELEEKVKELKE- 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1043 cIQKSEQLATAAAGKEDALLSASAEIASLREENLVKKSQIEAMNIQMSTLKNDLETEHEKWRVAQRNYERqvillsetIQ 1122
Cdd:PRK03918 288 -LKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEE--------LE 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1123 ELTKTSQALAALQEEASELRKLADARGIENSElnakwsEEKLMLEQQKNLAEKKYHELNEQNKLLHSRLEAKHLNSAEKN 1202
Cdd:PRK03918 359 ERHELYEEAKAKKEELERLKKRLTGLTPEKLE------KELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELK 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1203 SRSGTISSGSTDSDHLEDSGLQRvvhylRRTKEIAETEislmrQEKLRLQSQLESALKMAESARGSLTAERASTRASLLT 1282
Cdd:PRK03918 433 KAKGKCPVCGRELTEEHRKELLE-----EYTAELKRIE-----KELKEIEEKERKLRKELRELEKVLKKESELIKLKELA 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1283 DDgIKSLQLQVSEMNLlresnmqlrEENKHNFEKCQEMREVAQKARMESENFENLLKtkqtELDLCMKEMEKLRMETDLH 1362
Cdd:PRK03918 503 EQ-LKELEEKLKKYNL---------EELEKKAEEYEKLKEKLIKLKGEIKSLKKELE----KLEELKKKLAELEKKLDEL 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1363 KKRVDELRETYRNIDIADYNRLKDEVRQLEEKLKaKDAHAEDCKKVLLEKQNKISLLEKELTNCKKDLSEREKRLDDAQQ 1442
Cdd:PRK03918 569 EEELAELLKELEELGFESVEELEERLKELEPFYN-EYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRK 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1443 AQATMQSEFNKQkqELEKNKKIHYTLNMTKRKYEKEKDELSKQNQSLAKQLEEAKEEagkrtttdavveqsVKEREEKEK 1522
Cdd:PRK03918 648 ELEELEKKYSEE--EYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEE--------------LEEREKAKK 711
|
570 580
....*....|....*....|....*....
gi 334184013 1523 RIQILDKYVHQLKdEVRKKTEDLKKKDEE 1551
Cdd:PRK03918 712 ELEKLEKALERVE-ELREKVKKYKALLKE 739
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1015-1575 |
2.45e-07 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 56.21 E-value: 2.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1015 RLEAEKRQRSLEAELVSLRERVSELENDC---IQKSEQLATAAAGKEDALLSASAEIASLREENLVKKSQIEAMNIQMST 1091
Cdd:TIGR00606 358 RHQEHIRARDSLIQSLATRLELDGFERGPfseRQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKG 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1092 LKNDLETEHEKWRVAQ----------RNYERQVILLSETIQELTKTSQALAALQEEASELRKLADARGIENSELNAkwsE 1161
Cdd:TIGR00606 438 LGRTIELKKEILEKKQeelkfvikelQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADL---D 514
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1162 EKLMLEQQKNlAEKKYHELNEQNKLLHSRLEAKHLNSAEKNSRSGTISSGSTDSDHLEDSGLQRVVHYLRRTKEI----- 1236
Cdd:TIGR00606 515 RKLRKLDQEM-EQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQtrdrl 593
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1237 ---------AETEISLMRQEKLRLQSQLESALKMAESARGSLTAERASTRASLLTDDGIKSLQLQVSEMNLLRESNMQLR 1307
Cdd:TIGR00606 594 aklnkelasLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLT 673
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1308 EENKHNFEKCQ-------EMREVAQK-------ARMESENFENLLKTKQTELDLCMKEMEKLRMETDLHKKRVDELRETY 1373
Cdd:TIGR00606 674 DENQSCCPVCQrvfqteaELQEFISDlqsklrlAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKL 753
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1374 RNIDiADYNRLKDEVRQLEEKLK---AKDAHAEDCkkvllekQNKISLLEKeltnCKKDLSEREKRLddAQQAQATMQSE 1450
Cdd:TIGR00606 754 QKVN-RDIQRLKNDIEEQETLLGtimPEEESAKVC-------LTDVTIMER----FQMELKDVERKI--AQQAAKLQGSD 819
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1451 FNKQKQEL--EKNKKIHYTLNMTKRKYEKEK--DELSKQNQSLAKQLEEAKEEAGKRTTTDAVVEQSVKEREEKEKRIQI 1526
Cdd:TIGR00606 820 LDRTVQQVnqEKQEKQHELDTVVSKIELNRKliQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQS 899
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|...
gi 334184013 1527 LDKYVHQLKDEV----RKKTEDLKKKDEELTKERSERKSVEKEVGDSLTKIKK 1575
Cdd:TIGR00606 900 LIREIKDAKEQDspleTFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKN 952
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
962-1619 |
2.46e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 56.23 E-value: 2.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 962 GSAMSIELRTAKEEIEKLRGEVESSKSHMLQYKSIAQVNEtalKQMESAHENFRLEAEKRQRSLEAELVSLRERVSELEN 1041
Cdd:TIGR02169 225 GYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELE---KRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEA 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1042 DCIQKSEQLATAAAGKEDA---LLSASAEIASLREENLVKKSQIEAMNIQMSTLKNDLETEHEKWRVAQRNYERQVILLS 1118
Cdd:TIGR02169 302 EIASLERSIAEKERELEDAeerLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFA 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1119 ETIQELTKTSQALAALQEEASELRKLADARGIENSELNAKwseeklmLEQQKNLAEKKYHELNEqnklLHSRLEAKHLNS 1198
Cdd:TIGR02169 382 ETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEE-------LADLNAAIAGIEAKINE----LEEEKEDKALEI 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1199 AEKnsrSGTISSGSTDSDHLEDSglqrvvhYLRRTKEIAETEislmrqeklRLQSQLESALKMAE-SARGSLTAERASTR 1277
Cdd:TIGR02169 451 KKQ---EWKLEQLAADLSKYEQE-------LYDLKEEYDRVE---------KELSKLQRELAEAEaQARASEERVRGGRA 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1278 ASLLTDDGIKSLQLQVSEMNLLRESNMQLRE------------ENKHNFEKCQEMREVAQKARMeseNFENLLKTKQTEL 1345
Cdd:TIGR02169 512 VEEVLKASIQGVHGTVAQLGSVGERYATAIEvaagnrlnnvvvEDDAVAKEAIELLKRRKAGRA---TFLPLNKMRDERR 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1346 D----------------------------------LCMKEMEKLR----------METDLHKK----------------- 1364
Cdd:TIGR02169 589 DlsilsedgvigfavdlvefdpkyepafkyvfgdtLVVEDIEAARrlmgkyrmvtLEGELFEKsgamtggsraprggilf 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1365 ------RVDELRETYRNIDIaDYNRLKDEVRQLEEKLKAKDAHAEDCKKVLLEKQNKISLLEKELTNCKKDLSEREKRLD 1438
Cdd:TIGR02169 669 srsepaELQRLRERLEGLKR-ELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLS 747
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1439 DAQQAQA---TMQSEFNKQKQELEKNK-KIHYTLNMTKRKY--------EKEKDELSKQNQSLAKQLEEAKEEAGKRTTT 1506
Cdd:TIGR02169 748 SLEQEIEnvkSELKELEARIEELEEDLhKLEEALNDLEARLshsripeiQAELSKLEEEVSRIEARLREIEQKLNRLTLE 827
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1507 DAVVEQSVKerEEKEKRIQILDKyvhqlKDEVRKKTEDLKKKDEELTKERSERKSVEKEVGDSLTKIKKEKTKVDEELAK 1586
Cdd:TIGR02169 828 KEYLEKEIQ--ELQEQRIDLKEQ-----IKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRE 900
|
730 740 750
....*....|....*....|....*....|...
gi 334184013 1587 LERyqtALTHLSEELEKLKHADGNLPEGTSAVQ 1619
Cdd:TIGR02169 901 LER---KIEELEAQIEKKRKRLSELKAKLEALE 930
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1289-1550 |
2.50e-07 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 55.79 E-value: 2.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1289 LQLQV-SEMNLLRESnmQLREENKHNFEKCQEMREVAQKARMEsENFENLLKTKQTEldlcmkemeklrmETDLHKKRVD 1367
Cdd:PHA02562 160 LDISVlSEMDKLNKD--KIRELNQQIQTLDMKIDHIQQQIKTY-NKNIEEQRKKNGE-------------NIARKQNKYD 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1368 ELRETYRNIDiADYNRLKDEVRQLEEKLKAKDAHAEDCKKVLLEKQNKISLLEKELT---------NCKKDLSEREKRLD 1438
Cdd:PHA02562 224 ELVEEAKTIK-AEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKmyekggvcpTCTQQISEGPDRIT 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1439 DAQQAQATMQSEFNKQKQELEKNKKIHYTLNMTKRKYEKEKDELSKQNQSLAKQLEEAKEeagkrttTDAVVEQSVKERE 1518
Cdd:PHA02562 303 KIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKK-------VKAAIEELQAEFV 375
|
250 260 270
....*....|....*....|....*....|..
gi 334184013 1519 EKEKRIqilDKYVHQLKDEVRKKTEDLKKKDE 1550
Cdd:PHA02562 376 DNAEEL---AKLQDELDKIVKTKSELVKEKYH 404
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1005-1605 |
2.90e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.10 E-value: 2.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1005 KQMESAHENFRLEAEKRQRSLEAELVSLRERVSELendciqksEQLATAAAGKEDALLSASAEIASLREENLVKKSQIEA 1084
Cdd:COG1196 207 RQAEKAERYRELKEELKELEAELLLLKLRELEAEL--------EELEAELEELEAELEELEAELAELEAELEELRLELEE 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1085 MNIQMSTLKNDLetehekwrvaqRNYERQVILLSETIQELTKTSQALAALQEEASELRKLADARGIENSELNAKWSEEKL 1164
Cdd:COG1196 279 LELELEEAQAEE-----------YELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELE 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1165 MLEQQKNLAEKKYHELNEQNKLLHSRLEAKHLNSAEKNSRSGTISSgstdsdhlEDSGLQRVVHYLRRTKEIAETEISLM 1244
Cdd:COG1196 348 EAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR--------AAAELAAQLEELEEAEEALLERLERL 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1245 RQEKLRLQSQLESALKMAESARGSLTAERASTRASLLTddgIKSLQLQVSEMNLLRESNMQLREENKHNFEKCQEMREVA 1324
Cdd:COG1196 420 EEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE---EEALLELLAELLEEAALLEAALAELLEELAEAAARLLLL 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1325 QKARMESENFENLLKTKQTELDLCMKEMEKLRMETDlhKKRVDELRETYRNIDIADYNRLKDEV-RQLEEKLKAKDAHAE 1403
Cdd:COG1196 497 LEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGV--EAAYEAALEAALAAALQNIVVEDDEVaAAAIEYLKAAKAGRA 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1404 DckKVLLEKQNKISLLEKELTNCKKDLSEREKRLDDAQQAQATMQSEFNKQKQELEKNKKIHYTLNMTKRKYEKEKDELS 1483
Cdd:COG1196 575 T--FLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLE 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1484 KQNQSLAKQLEEAKEEAGKRTTTDAVVEQSVKEREEKEKRIQILDKyVHQLKDEVRKKTEDLKKKDEELTKERSERKSVE 1563
Cdd:COG1196 653 GEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEA-LLAEEEEERELAEAEEERLEEELEEEALEEQLE 731
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 334184013 1564 KEVGDSLTKIKKEKTKVDEELAKLERYQTALTHLSEELEKLK 1605
Cdd:COG1196 732 AEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLE 773
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1325-1624 |
3.51e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.84 E-value: 3.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1325 QKARMESENFENLLKTKQ-TELDLCMKEMEKLRMETDLHKKRVDELRETYRNIDI------ADYNRLKDEVRQLEEKLKA 1397
Cdd:TIGR02169 204 RREREKAERYQALLKEKReYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEeiseleKRLEEIEQLLEELNKKIKD 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1398 KDAHAEdckkvlLEKQNKISLLEKELTNCKKDLSEREKRLDDAQQAQATMQSEFNKQKQELEKNKKIHYTLNMTKRKYEK 1477
Cdd:TIGR02169 284 LGEEEQ------LRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTE 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1478 EKDELSKQNQSLAKQLEEAKEEAgkRTTTDAVVEQSVK------EREEKEKRIQILDKYVHQLKDEVRKKTEDLKKKDEE 1551
Cdd:TIGR02169 358 EYAELKEELEDLRAELEEVDKEF--AETRDELKDYREKleklkrEINELKRELDRLQEELQRLSEELADLNAAIAGIEAK 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1552 LTKERSERKSVEKEV----------GDSLTKIKKEKTKVDEELAKLERYQTALTHLSEELEKLKHADGNLPEGTSAVQVL 1621
Cdd:TIGR02169 436 INELEEEKEDKALEIkkqewkleqlAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEV 515
|
...
gi 334184013 1622 SGS 1624
Cdd:TIGR02169 516 LKA 518
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
843-1602 |
3.78e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 55.51 E-value: 3.78e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 843 EEHIKQLQREWAEAKKELQEERSNARDFTSDRNQTLNNAVMQVEEMGKELANALKAVSVAESRASVAEarlSDLEKKIRS 922
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQ---EDLRNQLQN 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 923 SdpktldmdsggivslsdkeaalviildvVHKIQAGFRIGSAMsieLRTAKEEIEKLRGEVESSKSHMLQYKSIAQVNET 1002
Cdd:pfam15921 150 T----------------------------VHELEAAKCLKEDM---LEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEE 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1003 ALKQMESAHEN-----FR---LEAEKRQRSLEAELVSLRERVSELENdciqKSEQLATAAAGKEDALLSASAEiaslREE 1074
Cdd:pfam15921 199 ASGKKIYEHDSmstmhFRslgSAISKILRELDTEISYLKGRIFPVED----QLEALKSESQNKIELLLQQHQD----RIE 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1075 NLVKKSQIEAMNI---------QMSTLKNDLETEHEKWRVAQRNYERQVILLSETIQELTktSQALAALQEEASELRKLA 1145
Cdd:pfam15921 271 QLISEHEVEITGLtekassarsQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLR--SELREAKRMYEDKIEELE 348
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1146 DARGIENSELNAKWSEEKLMLEQQKNLAEKKYHELNEqnklLHSRLEAKHLNSaEKNSRSGTISSGSTDS-DHLE----- 1219
Cdd:pfam15921 349 KQLVLANSELTEARTERDQFSQESGNLDDQLQKLLAD----LHKREKELSLEK-EQNKRLWDRDTGNSITiDHLRreldd 423
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1220 -DSGLQRVVHYLRRTKEIAETEislMRQEKLRLQSQLESALKMAesargSLTAERASTRASL---LTDDGIKSLQLQVSE 1295
Cdd:pfam15921 424 rNMEVQRLEALLKAMKSECQGQ---MERQMAAIQGKNESLEKVS-----SLTAQLESTKEMLrkvVEELTAKKMTLESSE 495
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1296 MNLlRESNMQLREENKHNFEKCQEMREVAQKARMESENFENLlKTKQTELDLCMKEMEKLRMETDLHKKRVDELRETYRN 1375
Cdd:pfam15921 496 RTV-SDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHL-KNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIEN 573
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1376 ID--IADYNR----LKDEVRQLEEKLKAKDAHAEDCKKVLLEKQNKISLLEKELTNCKKDL-------SEREKRLDDAQQ 1442
Cdd:pfam15921 574 MTqlVGQHGRtagaMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKvklvnagSERLRAVKDIKQ 653
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1443 AQATMQSEFNKQKQELEKNKKIHYTLnmtKRKYEKEKDELSKQNQSLAKQLEEAKEEAGKRTTTDAVVEQSVKEREEKEK 1522
Cdd:pfam15921 654 ERDQLLNEVKTSRNELNSLSEDYEVL---KRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAM 730
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1523 RIQILDKYVHQLKDEVRKKTEDLKKKDEELTKERSERKSVEKEVGDSLTKIKKEKTKVDEELAKLERYQTALTHLSEELE 1602
Cdd:pfam15921 731 GMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANME 810
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1287-1588 |
4.87e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 55.03 E-value: 4.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1287 KSLQLQVSEMNLLRESNMQLREENKHNFEKCQEMREVAQKARMESENFENLLKTKQTELDLCMKEMEKLRMETdlhkkrv 1366
Cdd:TIGR04523 363 RELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETI------- 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1367 delretyrnidiadyNRLKDEVRQLEEKLKAKDAHAEDCKKVLLEKQNKISLLEKELTNCKKDLSEREKRLDDaqqaQAT 1446
Cdd:TIGR04523 436 ---------------IKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKS----KEK 496
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1447 MQSEFNKQKQELEKN----KKIHYTLNMTKRKYEKEKDELSKQNQSLAKQLEEAKEEAGKrtttdavvEQSVKEREEKEK 1522
Cdd:TIGR04523 497 ELKKLNEEKKELEEKvkdlTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKK--------ENLEKEIDEKNK 568
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 334184013 1523 RIQILDKYVHQLKDEVRKKTEDLKKKDEE---LTKERSERKSVEKEVGDSLTKIKKEKTKVDEELAKLE 1588
Cdd:TIGR04523 569 EIEELKQTQKSLKKKQEEKQELIDQKEKEkkdLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIK 637
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
1335-1736 |
8.59e-07 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 54.67 E-value: 8.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1335 ENLLKTKQTELDLcMKEMEKLRMetDLHKKRVDELREtyrnidiadynRLKDEVRQLEEKLKAKDAHAED-------CKK 1407
Cdd:PTZ00108 969 NGKIKKYSDALDI-LKEFYLVRL--DLYKKRKEYLLG-----------KLERELARLSNKVRFIKHVINGelvitnaKKK 1034
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1408 VLLEKQNKISLLEKELTNCKKDLSEREKRLDDAQQAQATMQSEFNKqkqELEKNKKIHYTLNM-----TKRKYEKEKDEL 1482
Cdd:PTZ00108 1035 DLVKELKKLGYVRFKDIIKKKSEKITAEEEEGAEEDDEADDEDDEE---ELGAAVSYDYLLSMpiwslTKEKVEKLNAEL 1111
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1483 SKQNQSLAKqLEEAKEEAGKRTTTDAVVEQSVKEREEKEKRI-QILDKYVHQLKDEV---RKKTEDLKKKDEELTKERSE 1558
Cdd:PTZ00108 1112 EKKEKELEK-LKNTTPKDMWLEDLDKFEEALEEQEEVEEKEIaKEQRLKSKTKGKASklrKPKLKKKEKKKKKSSADKSK 1190
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1559 RKSVEKEVGDSLTKIKKEKTKVDEElAKLERYQTALTHLSEELEKLKHADGNLPEGTSAvQVLSGSILNDQAAAYVSAVE 1638
Cdd:PTZ00108 1191 KASVVGNSKRVDSDEKRKLDDKPDN-KKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKN-NSSKSSEDNDEFSSDDLSKE 1268
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1639 YFERVARSIASNSQVSTKPTDMVTEPSSGIpAAEPSTMTRVPSSTPLIKSPVATTQQL---PKVASDNKEKRLISQKPSt 1715
Cdd:PTZ00108 1269 GKPKNAPKRVSAVQYSPPPPSKRPDGESNG-GSKPSSPTKKKVKKRLEGSLAALKKKKkseKKTARKKKSKTRVKQASA- 1346
|
410 420
....*....|....*....|.
gi 334184013 1716 efrRPSGRRIVRPQLVKPEES 1736
Cdd:PTZ00108 1347 ---SQSSRLLRRPRKKKSDSS 1364
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
22-353 |
1.48e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.79 E-value: 1.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 22 AERADEYiRKIYAELDSVRAKADAASItaeqtcSLLEQKYLSLSQDFSSLESQNAKLQSDFDDRLAELAQSQAQKHQLHL 101
Cdd:COG1196 209 AEKAERY-RELKEELKELEAELLLLKL------RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELEL 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 102 QSIEKDGEVERMSTEMSELHKSKRQLMELLEQKDAEISEKNSTIKSYLDKIVKLTDTSSEKEARLAEATAELARSQAMCS 181
Cdd:COG1196 282 ELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELA 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 182 RLSQEKELTERHAKWLDEELTAKVDSYAELRRRHSDLESEMSAKLVDVEKNyiecssslnwhKERLRELETKIGSLQEDL 261
Cdd:COG1196 362 EAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEAL-----------LERLERLEEELEELEEAL 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 262 SSCKDAATTTEEQYTAELFTANKLVDLYKESSEEWSRKAGELEGVIKALEARLSQVESSYKERLDKEVSTKQLLEKENGD 341
Cdd:COG1196 431 AELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGV 510
|
330
....*....|..
gi 334184013 342 LKQKLEKCEAEI 353
Cdd:COG1196 511 KAALLLAGLRGL 522
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1332-1984 |
2.67e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.84 E-value: 2.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1332 ENFENLLKTKQTELDLCMKEMEKLRMETDLHKKRVDELRETYRNIDIADYNRLKDEVRQLEEKLKAKDAH-AEDCKKVLL 1410
Cdd:PTZ00121 1077 KDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARkAEDAKRVEI 1156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1411 EKQNKisllekeltncKKDLSEREKRLDDAQQAQATMQSEFNKQKQELEKNKKIHYTlnMTKRKYEKEKDELSKQNQSLA 1490
Cdd:PTZ00121 1157 ARKAE-----------DARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKA--EAARKAEEERKAEEARKAEDA 1223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1491 KQLEEAKE-EAGKRTTTDAVVEQSVKEREE----KEKRIQILDKYVHQLKDEVRKKTEDLKKKdEELTKERSERKSVEKE 1565
Cdd:PTZ00121 1224 KKAEAVKKaEEAKKDAEEAKKAEEERNNEEirkfEEARMAHFARRQAAIKAEEARKADELKKA-EEKKKADEAKKAEEKK 1302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1566 VGDSLTKIKKEKTKVDEELAKLERYQTALTHLSEELEKLKHADgnlpegtsavqvlsgSILNDQAAAYVSAVEYFERVAR 1645
Cdd:PTZ00121 1303 KADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAA---------------EAAKAEAEAAADEAEAAEEKAE 1367
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1646 SIASNSQVSTKPTDMVTEPSSGIPAAEpstmtrvpsstplikspvattqQLPKVASDNKEKRLISQKPSTEFRRPSGRRI 1725
Cdd:PTZ00121 1368 AAEKKKEEAKKKADAAKKKAEEKKKAD----------------------EAKKKAEEDKKKADELKKAAAAKKKADEAKK 1425
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1726 VRPQLVKPEESPKVDVDMPEAEGTGDEGKQPAAHEPESQVTTSVRPVQTLVRKRQADSLVSEPQQdsltQGETSSEIAPP 1805
Cdd:PTZ00121 1426 KAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKK----KAEEAKKKADE 1501
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1806 ASKKAKGSESHPDTSEGENLAKEpaiDELMDATTTTDGDNEETEAENAE----EKTEEYVEAQQDNEADEPVEESPTETE 1881
Cdd:PTZ00121 1502 AKKAAEAKKKADEAKKAEEAKKA---DEAKKAEEAKKADEAKKAEEKKKadelKKAEELKKAEEKKKAEEAKKAEEDKNM 1578
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1882 TIPTEEESRdQTEEENQEPLtdMESDKEEGELDLDTLEDLEEGTDVASMMRSPEKEEVQPETLATPTQSPSRM--ETAME 1959
Cdd:PTZ00121 1579 ALRKAEEAK-KAEEARIEEV--MKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKaeELKKA 1655
|
650 660
....*....|....*....|....*
gi 334184013 1960 EAETTIETPVEDDKTDEGGDAAEEA 1984
Cdd:PTZ00121 1656 EEENKIKAAEEAKKAEEDKKKAEEA 1680
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1472-1590 |
3.79e-06 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 52.09 E-value: 3.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1472 KRKYEKEKDELSKQNQSLAKQLE-EAKEEAGKRTTTdavVEQSVKEREEKekrIQILDKYVHQLKDEVRKKTEDLKKKDE 1550
Cdd:PRK12704 37 EEEAKRILEEAKKEAEAIKKEALlEAKEEIHKLRNE---FEKELRERRNE---LQKLEKRLLQKEENLDRKLELLEKREE 110
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 334184013 1551 ELTKERSERKSVEKEVGDsltKIKKEKTKVDEELAKLERY 1590
Cdd:PRK12704 111 ELEKKEKELEQKQQELEK---KEEELEELIEEQLQELERI 147
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1019-1548 |
3.99e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.94 E-value: 3.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1019 EKRQRSLEAELVSLRERVSELENDCIQKSE---QLATAAAGKEDALLSASAEIASLREENLVKKSQIEAMNIQMSTLKND 1095
Cdd:TIGR04523 210 IQKNKSLESQISELKKQNNQLKDNIEKKQQeinEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQ 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1096 L------------ETEHEKWRVAQRNYERQVILLSETIQELTKTSQALAALQEEASELRKLADARGIENSEL-------- 1155
Cdd:TIGR04523 290 LnqlkseisdlnnQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKqreleekq 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1156 ---------NAKWSEEKLMLEQQKNLAEKKYHELNEQNKLLHSRLEAKHLNSAE-----KNSRSGTISSGSTDSD-HLED 1220
Cdd:TIGR04523 370 neieklkkeNQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELlekeiERLKETIIKNNSEIKDlTNQD 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1221 SGLQRVVHYLRRTKEIAETEISLMRQEKLRLQSQLEsalkmaesargsltaerastraslltdDGIKSLQLQVSEMNLLR 1300
Cdd:TIGR04523 450 SVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLE---------------------------QKQKELKSKEKELKKLN 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1301 ESNMQLREENKHNFEKCQEMREVAQKARMESENFENLLKTKQTEL--DLCMKEMEKLRMETDLHKKRVDELRETYRNidi 1378
Cdd:TIGR04523 503 EEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELnkDDFELKKENLEKEIDEKNKEIEELKQTQKS--- 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1379 adynrLKDEVRQLEEKLKAKDAHAEDCKKVLLEKQNKISLLEKELTNCKKDLSEREKRLDDaqqaqatMQSEFNKQKQEL 1458
Cdd:TIGR04523 580 -----LKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKN-------IKSKKNKLKQEV 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1459 EKNKKIHYTLNMTKRKYEKEKDELSKQNQSLAKQLEEAKEEAG---KRTTTDAVVEQSVKEREEKEKRIQILDKYVHQLK 1535
Cdd:TIGR04523 648 KQIKETIKEIRNKWPEIIKKIKESKTKIDDIIELMKDWLKELSlhyKKYITRMIRIKDLPKLEEKYKEIEKELKKLDEFS 727
|
570
....*....|...
gi 334184013 1536 DEVRKKTEDLKKK 1548
Cdd:TIGR04523 728 KELENIIKNFNKK 740
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1389-1594 |
4.97e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 51.66 E-value: 4.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1389 RQLEEKLKAKDAHAEDCKKVLLEKQNKISLLEKELTNCKKDLSERE-------------KRLDDAQQAQATMQSEFNKQK 1455
Cdd:pfam17380 316 RKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQEERKRElerirqeeiameiSRMRELERLQMERQQKNERVR 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1456 QELEKNKKIHYTLNMTKRKYEKEKDELSKqnqsLAKQLEEAKEEAGKRTTTDAVVEQSvKEREEKEKRIQILDKYVHQLK 1535
Cdd:pfam17380 396 QELEAARKVKILEEERQRKIQQQKVEMEQ----IRAEQEEARQREVRRLEEERAREME-RVRLEEQERQQQVERLRQQEE 470
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 334184013 1536 DEVRKKTEDLKKKDEELTKERSERKSVEKEVGDSLTKIKKEKTKVDEELAKLERYQTAL 1594
Cdd:pfam17380 471 ERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAI 529
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1334-1605 |
6.11e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.56 E-value: 6.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1334 FENLLKTKQTELDLCMKEMEKLRMETDLHKKRVDELrETYRNIDIADYNRLKDEVRQLEEKLKakdahaeDCKKVLLEKQ 1413
Cdd:TIGR04523 24 YKNIANKQDTEEKQLEKKLKTIKNELKNKEKELKNL-DKNLNKDEEKINNSNNKIKILEQQIK-------DLNDKLKKNK 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1414 NKISLLEKELTNCKKD--------------LSEREKRLDDAQQAQATMQSEFNKQKQELEKNKKIHYTLNMTKRKYEKEK 1479
Cdd:TIGR04523 96 DKINKLNSDLSKINSEikndkeqknkleveLNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENEL 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1480 DELSKQNQSLAKQLEEAKEEAGKRTTTDAVVEQSVKEREEKEKRIQILDKYVHQLKDEVRKKTEDLKKKDEELtkerser 1559
Cdd:TIGR04523 176 NLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEI------- 248
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 334184013 1560 KSVEKEVGDSLTKIKKEKTKVDEELAKLERYQTALTHLSEELEKLK 1605
Cdd:TIGR04523 249 SNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLK 294
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
469-1605 |
8.47e-06 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 51.21 E-value: 8.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 469 YCLVNQKLQDSVSEQSNMEKFIMELKADLRRRERENTLLQKDISDLQKQVTILlkecrdvqlrcgaardDDEDDYplLSD 548
Cdd:TIGR01612 539 YKEIEAGLKESYELAKNWKKLIHEIKKELEEENEDSIHLEKEIKDLFDKYLEI----------------DDEIIY--INK 600
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 549 VEMEMESEADKII--SEHLLKFKDINGLVEQNVKLRNLVRSLS-----EQIESRET-------ELKETFEVDLKNKTDEA 614
Cdd:TIGR01612 601 LKLELKEKIKNISdkNEYIKKAIDLKKIIENNNAYIDELAKISpyqvpEHLKNKDKiystiksELSKIYEDDIDALYNEL 680
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 615 SAKVATVLKRAEEQGQMIESLHTSV-AMYKRLYEEEQ---KLHSSD-SRSSDLSPAVVPGRKNFLH---------LLEDS 680
Cdd:TIGR01612 681 SSIVKENAIDNTEDKAKLDDLKSKIdKEYDKIQNMETatvELHLSNiENKKNELLDIIVEIKKHIHgeinkdlnkILEDF 760
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 681 EEATKRAQEKAFERIRILEEdFAKARSEVIAIRSERDKlamEANFAREKLEGIMKESERKREEMNSVLARNIEFSQLI-- 758
Cdd:TIGR01612 761 KNKEKELSNKINDYAKEKDE-LNKYKSKISEIKNHYND---QINIDNIKDEDAKQNYDKSKEYIKTISIKEDEIFKIIne 836
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 759 ---------------IDHQRKLRESSESLHAA-EEISRKLSMEVSvlkqeKELLSNAEKRASDEVSALSQRVYRLQATLD 822
Cdd:TIGR01612 837 mkfmkddflnkvdkfINFENNCKEKIDSEHEQfAELTNKIKAEIS-----DDKLNDYEKKFNDSKSLINEINKSIEEEYQ 911
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 823 TVQSTEEVREETRAAERRKqeEHIKQLQREWAEAKKEL-------QEERSNARDFTSDRNQTLNNAVMQVEEMGKELana 895
Cdd:TIGR01612 912 NINTLKKVDEYIKICENTK--ESIEKFHNKQNILKEILnknidtiKESNLIEKSYKDKFDNTLIDKINELDKAFKDA--- 986
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 896 lkAVSVAESRASVAEARLSDLEKKIRSSDPKTLdmdsggIVSLSDKEAAlviILDVVHKIQAGFRIGSAMSIELRTA--- 972
Cdd:TIGR01612 987 --SLNDYEAKNNELIKYFNDLKANLGKNKENML------YHQFDEKEKA---TNDIEQKIEDANKNIPNIEIAIHTSiyn 1055
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 973 -KEEIEKLRGevesskshmlqyKSIAQVNETALKQMESAHENFRLEAEKRQRS-----LEAELVSLRERVSELENDCIQK 1046
Cdd:TIGR01612 1056 iIDEIEKEIG------------KNIELLNKEILEEAEINITNFNEIKEKLKHYnfddfGKEENIKYADEINKIKDDIKNL 1123
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1047 SEQLataaagkeDALLSASAEIASlREENLVK--KSQIEAM-NIQMSTLKNDLETEHEKwrvAQRNYERQVILLSETIQE 1123
Cdd:TIGR01612 1124 DQKI--------DHHIKALEEIKK-KSENYIDeiKAQINDLeDVADKAISNDDPEEIEK---KIENIVTKIDKKKNIYDE 1191
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1124 LTKTSQALAALQEEASELRKladargIENSELNAKWSEEKLMLEQQKNLAEKKYHELNEQNKLLHSRLEAKHlNSAEKNS 1203
Cdd:TIGR01612 1192 IKKLLNEIAEIEKDKTSLEE------VKGINLSYGKNLGKLFLEKIDEEKKKSEHMIKAMEAYIEDLDEIKE-KSPEIEN 1264
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1204 RSGTISSGSTDSDHLEDSGLQRVVHYLrrTKEIAETEISLMRQEKLRLqsqlesalkmaesargsltAERASTRASLltD 1283
Cdd:TIGR01612 1265 EMGIEMDIKAEMETFNISHDDDKDHHI--ISKKHDENISDIREKSLKI-------------------IEDFSEESDI--N 1321
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1284 DGIKSLQLQVSemnllresnmqlrEENKHNFEKCQEMREVAqkarmeseNFENLLKTKQTeldlcmkemeklrmetdlhK 1363
Cdd:TIGR01612 1322 DIKKELQKNLL-------------DAQKHNSDINLYLNEIA--------NIYNILKLNKI-------------------K 1361
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1364 KRVDELREtYRNiDIADYNR-LKDEVRQLEEKLKA--KDAHAEDCKKVLlekqnKISLLEKELTNCKKDLSEREKRLdda 1440
Cdd:TIGR01612 1362 KIIDEVKE-YTK-EIEENNKnIKDELDKSEKLIKKikDDINLEECKSKI-----ESTLDDKDIDECIKKIKELKNHI--- 1431
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1441 qQAQATMQSEFNKQKQELEKN-----KKIHYTLNMTKRKYEKEKDELSKQNQSLAKQLEEAKEEAGK-RTTTDAVVEQSV 1514
Cdd:TIGR01612 1432 -LSEESNIDTYFKNADENNENvlllfKNIEMADNKSQHILKIKKDNATNDHDFNINELKEHIDKSKGcKDEADKNAKAIE 1510
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1515 KERE----EKEKRIQILDKYVHQlkdEVRKKTEDLKKKDEELTKERSE-RKSVEKEVGDS---LTKIKKEKTKVDEELAK 1586
Cdd:TIGR01612 1511 KNKElfeqYKKDVTELLNKYSAL---AIKNKFAKTKKDSEIIIKEIKDaHKKFILEAEKSeqkIKEIKKEKFRIEDDAAK 1587
|
1210
....*....|....*....
gi 334184013 1587 LERYQTALTHLSEELEKLK 1605
Cdd:TIGR01612 1588 NDKSNKAAIDIQLSLENFE 1606
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
686-921 |
9.74e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.84 E-value: 9.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 686 RAQEKAFERIRILEEDFAKARSEVIAIRSERDKLAMEANFAREKLEGIMKESERK-REEMNSVLARNIEFSQLIIDHQRK 764
Cdd:TIGR02169 230 KEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgEEEQLRVKEKIGELEAEIASLERS 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 765 LRESSESLHAAEEISRKLSMEVSVLKQEKELLSNAEKRASDEVSALSQRVYRLQATLDTVQSTEEVREETRAAERRKQ-- 842
Cdd:TIGR02169 310 IAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELkd 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 843 -EEHIKQLQREWAEAKKE---LQEERSNARDFTSDRNQTLNNAVMQVEEMGKELANALKAVSVAESRASVAEARLSDLEK 918
Cdd:TIGR02169 390 yREKLEKLKREINELKREldrLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQ 469
|
...
gi 334184013 919 KIR 921
Cdd:TIGR02169 470 ELY 472
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
693-1041 |
1.37e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.45 E-value: 1.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 693 ERIRILEEDFAKARSEVIAIRSERDKLAMEANFAREKLEGIMKESERKREEMNSvlarnieFSQLIIDHQRKLRESSESL 772
Cdd:TIGR02169 681 ERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEK-------LKERLEELEEDLSSLEQEI 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 773 HAAEEISRKLSMEVSVLKQEKELLSNAEkrASDEVSALSQRVYRLQATLDTVQstEEVREETRAAERRKQEEHIKQLQRE 852
Cdd:TIGR02169 754 ENVKSELKELEARIEELEEDLHKLEEAL--NDLEARLSHSRIPEIQAELSKLE--EEVSRIEARLREIEQKLNRLTLEKE 829
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 853 WAE-AKKELQEERSNARDFTSDRNQTLNNAVMQVEEMGKELANALKAVSVAESRASVAEARLSDLEKKIRSSDPKTLDMD 931
Cdd:TIGR02169 830 YLEkEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELE 909
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 932 SG---GIVSLSDKEAALVIILDVVHKIQAGFRIGSAMSIE---LRTAKEEIEKLRGEVEsskshmlqykSIAQVNETALK 1005
Cdd:TIGR02169 910 AQiekKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEelsLEDVQAELQRVEEEIR----------ALEPVNMLAIQ 979
|
330 340 350
....*....|....*....|....*....|....*.
gi 334184013 1006 QMESAHENFRLEAEKRQRsLEAELVSLRERVSELEN 1041
Cdd:TIGR02169 980 EYEEVLKRLDELKEKRAK-LEEERKAILERIEEYEK 1014
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
693-869 |
1.45e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.30 E-value: 1.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 693 ERIRILEEDFAKARSEVIAIRSERDKLAMEANFAREKLEGIMKESERKREEMNsVLARNIEFSQLIiDHQRKLRESSESL 772
Cdd:COG4913 610 AKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEID-VASAEREIAELE-AELERLDASSDDL 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 773 HAAEEISRKLSMEVSVLKQEKELLSNAEKRASDEVSALSQRVYRLQATLDTVQSTEEVREETRAAERRKQ---EEHIKQL 849
Cdd:COG4913 688 AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAalgDAVEREL 767
|
170 180
....*....|....*....|
gi 334184013 850 QREWAEAKKELQEERSNARD 869
Cdd:COG4913 768 RENLEERIDALRARLNRAEE 787
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
677-1280 |
1.50e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.45 E-value: 1.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 677 LEDSEEATKRAQEKAFERIRILEEDFAKARSEV--------------IAIRSERDKLAMEANFAREKLEGIMKESERKRE 742
Cdd:TIGR02169 306 LERSIAEKERELEDAEERLAKLEAEIDKLLAEIeelereieeerkrrDKLTEEYAELKEELEDLRAELEEVDKEFAETRD 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 743 EMNSVLARNIEFSQLIIDHQRKLRESSESLHAAEEISRKLSMEVSVLKQEKELLSNAEKRASDEVSALSQRVYRLQATLD 822
Cdd:TIGR02169 386 ELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLS 465
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 823 TVQSteevREETRAAERRKQEEHIKQLQREWAEAKKELQEERSNARDFTS------DRNQTLNNAVMQVEEMGKELANAL 896
Cdd:TIGR02169 466 KYEQ----ELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAveevlkASIQGVHGTVAQLGSVGERYATAI 541
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 897 KAVSVAESRASVAE-----ARLSDLEKKIRSSD----PKTLDMDSGGIVSLSDKEAALVIILDVVH---KIQAGFR--IG 962
Cdd:TIGR02169 542 EVAAGNRLNNVVVEddavaKEAIELLKRRKAGRatflPLNKMRDERRDLSILSEDGVIGFAVDLVEfdpKYEPAFKyvFG 621
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 963 SAMSIElrtakeeieklrgEVESSKSHMLQYKSIAQVNETALKQ--MESAHENFRlEAEKRQRSLEAELVSLRERVSELE 1040
Cdd:TIGR02169 622 DTLVVE-------------DIEAARRLMGKYRMVTLEGELFEKSgaMTGGSRAPR-GGILFSRSEPAELQRLRERLEGLK 687
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1041 NdciqkseqlataaagkedallsasaEIASLREENLVKKSQIEAMNIQMSTLKNDLETEHEKWRVAQRNYERQVILLSET 1120
Cdd:TIGR02169 688 R-------------------------ELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEEL 742
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1121 IQELTKTSQALAALQEEASELRKLADARGIENSELNAKWSEEKLMLEQQKnlAEKKYHELNEQNKlLHSRLEAKhLNSAE 1200
Cdd:TIGR02169 743 EEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSR--IPEIQAELSKLEE-EVSRIEAR-LREIE 818
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1201 KNsrsgtISSGSTDSDHLEDS--GLQRVVHYLRRTKEIAETEISLMRQEKLRLQSQLE---SALKMAESARGSLTAERAS 1275
Cdd:TIGR02169 819 QK-----LNRLTLEKEYLEKEiqELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEeleAALRDLESRLGDLKKERDE 893
|
....*
gi 334184013 1276 TRASL 1280
Cdd:TIGR02169 894 LEAQL 898
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
27-188 |
1.98e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 50.08 E-value: 1.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 27 EYIRKIYAELDSVRAKADAASITAEQtcslLEQKYLSLSQDFSSLESQNAKLQSDFDDRLAELAQSQAQKHQLHLQSIEK 106
Cdd:COG5022 878 ELAERQLQELKIDVKSISSLKLVNLE----LESEIIELKKSLSSDLIENLEFKTELIARLKKLLNNIDLEEGPSIEYVKL 953
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 107 DgEVERMSTEMSELHKSKRQLMELLEQKDAEISEKNSTI------KSYLDKIVKLTDTSSEKEARLAEATAELARSQAMC 180
Cdd:COG5022 954 P-ELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANselknfKKELAELSKQYGALQESTKQLKELPVEVAELQSAS 1032
|
....*...
gi 334184013 181 SRLSQEKE 188
Cdd:COG5022 1033 KIISSEST 1040
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
968-1567 |
2.44e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 49.58 E-value: 2.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 968 ELRTAKEEIEKLRGEVESSKS---HMLQYKSIAQVNETALKQMESAHENFRLEAEKRQRSLEAELVSLRERVSELENDCI 1044
Cdd:TIGR00618 271 ELRAQEAVLEETQERINRARKaapLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTL 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1045 QKSEQLATAAAGKEDALLSASAEIASLREENLVKKSQIEAMNIQMSTLKNDLETEHEK-----WRVAQRNYERQVILLSE 1119
Cdd:TIGR00618 351 HSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREqatidTRTSAFRDLQGQLAHAK 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1120 TIQELTKtsQALAALQEEASELRKLADARGIENSELNAKWSEEKLMLEQQKNLA--EKKYHELNEQNKLLHSRLEaKHLN 1197
Cdd:TIGR00618 431 KQQELQQ--RYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHlqETRKKAVVLARLLELQEEP-CPLC 507
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1198 SAEKNSRSGTISSGSTDSDHLEDSGLQRVVHYLRRTKEIAETEISLMRQEKLRLQSQLESA---LKMAESARGSLTAERA 1274
Cdd:TIGR00618 508 GSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIqqsFSILTQCDNRSKEDIP 587
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1275 STR--ASLLTDDGIKSLQLQVSEMNLLRESNMQLREEnKHNFEKCQEMREVAQKARME----SENFENLLKTKQTELDLC 1348
Cdd:TIGR00618 588 NLQniTVRLQDLTEKLSEAEDMLACEQHALLRKLQPE-QDLQDVRLHLQQCSQELALKltalHALQLTLTQERVREHALS 666
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1349 MKEMEKLRMETDLHKKRVDELRETYRNIDIADYNRLKDEVRQLEEKLKAKDAHAEDCKKVLLEKQNKislLEKELTNCKK 1428
Cdd:TIGR00618 667 IRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSD---LAAREDALNQ 743
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1429 DLSEREKRLDDAQQAQATMQSEFNKQKQELEKNKKIHYTLNMTKRKYEKEKDELSKQNQSLAKQLEE-AKEEAGKRTTTD 1507
Cdd:TIGR00618 744 SLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQeIPSDEDILNLQC 823
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1508 avvEQSVKEREEKEKRIQILDKYVHQLKDEVrKKTEDLKKKDEELTKERSERKSVEKEVG 1567
Cdd:TIGR00618 824 ---ETLVQEEEQFLSRLEEKSATLGEITHQL-LKYEECSKQLAQLTQEQAKIIQLSDKLN 879
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1487-1607 |
2.68e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 49.47 E-value: 2.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1487 QSLAKQLEEAKEE--AGKRTTTDAVVEQSVKEREEKEKRIQILDKYVHQLKDEVRKKTEDLKKKDEELTKERSERKSVEK 1564
Cdd:COG2433 376 LSIEEALEELIEKelPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEARS 455
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 334184013 1565 EVGDSLtKIKKEKTKVDEELAKLER----YQTALTHLSEELEKLKHA 1607
Cdd:COG2433 456 EERREI-RKDREISRLDREIERLEReleeERERIEELKRKLERLKEL 501
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
108-362 |
3.42e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.30 E-value: 3.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 108 GEVERMSTEMSELHKSKRQLMELLEQKDAEISEKNSTIKSYLDKIVKLTDTSSEKEARLAEATAELARSQAMCSRLSQEK 187
Cdd:TIGR02169 674 AELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEI 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 188 ELTERHAKWLDEELTAKVDSYAELRRRHSDLESEMSAKLVD-VEKNYIECSSSLNWHKERLRELETKIGSLQEDLSSCKD 266
Cdd:TIGR02169 754 ENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPeIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEK 833
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 267 AATTTEEQytAELFTANKlvDLYKESSEEWSRKAGELEGVIKALEARLSQVESSYKErLDKEVSTkqlLEKENGDLKQKL 346
Cdd:TIGR02169 834 EIQELQEQ--RIDLKEQI--KSIEKEIENLNGKKEELEEELEELEAALRDLESRLGD-LKKERDE---LEAQLRELERKI 905
|
250
....*....|....*.
gi 334184013 347 EKCEAEIEKTRKTDEL 362
Cdd:TIGR02169 906 EELEAQIEKKRKRLSE 921
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
295-934 |
4.85e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.98 E-value: 4.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 295 EWSRKAGEL---EGVIKALEARLSQVESSYKERLDKEVSTKQLLEKENGDLKqKLEKCEAEIEKTRKTDELNlipfSNFT 371
Cdd:PTZ00121 1179 EAARKAEEVrkaEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVK-KAEEAKKDAEEAKKAEEER----NNEE 1253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 372 RRVDNSGTSNMIEESQAVISKVPAGVSGTALAASLLRDGWSLAKIYEKyQEAVDAMRHEQLGRKEAEmiLQRVLSELEEK 451
Cdd:PTZ00121 1254 IRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEK-KKADEAKKKAEEAKKADE--AKKKAEEAKKK 1330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 452 AGFIQEERGEYERVVEAYCLVNQKLQDSV------SEQSNMEKFIMELKADLRRRERENtllQKDISDLQKQVTILLKEC 525
Cdd:PTZ00121 1331 ADAAKKKAEEAKKAAEAAKAEAEAAADEAeaaeekAEAAEKKKEEAKKKADAAKKKAEE---KKKADEAKKKAEEDKKKA 1407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 526 RDVQLRCGAARDDDEddypLLSDVEMEMESEADKIISEHLLKFKDINGLVEQNVKLRNLVRSLSEQIESRETELK--ETF 603
Cdd:PTZ00121 1408 DELKKAAAAKKKADE----AKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKaeEAK 1483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 604 EVDLKNKTDEASAKVATVLKRAEEQGQMIESLHTSVAMYK----RLYEEEQKLHSSDSRSSDLSPAVVPGRKNFLHLLED 679
Cdd:PTZ00121 1484 KADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKadeaKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEK 1563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 680 SE-EATKRAQEKAFERIRILEE--DFAKARSEVIAIRSERDKLAMEANFAREKLEGIMKESERKREEMNSvlarniEFSQ 756
Cdd:PTZ00121 1564 KKaEEAKKAEEDKNMALRKAEEakKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKK------KVEQ 1637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 757 LIIDHQRKLRESSESLHAAEEISRKLSMEVSVLKQEKELLSNAEKRASDEVSALSQRVYRLQATLDTVQSTEEVREETRA 836
Cdd:PTZ00121 1638 LKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKK 1717
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 837 AERRKQEEHIKQLQREwaEAKKELQEERSNARDFTSDRNQTLNNAVMQVEEMGK-ELANALKAVSVAESRASVAEARLSD 915
Cdd:PTZ00121 1718 AEELKKAEEENKIKAE--EAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKaEEIRKEKEAVIEEELDEEDEKRRME 1795
|
650
....*....|....*....
gi 334184013 916 LEKKIRSSDPKTLDMDSGG 934
Cdd:PTZ00121 1796 VDKKIKDIFDNFANIIEGG 1814
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
105-359 |
6.08e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.53 E-value: 6.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 105 EKDGEVERMSTEMSELHKSKRQLMELLEQKDAEISEKNSTIKSYLDKI----VKLTDTSSEKEARLAEATAELARSQAMC 180
Cdd:TIGR02169 227 ELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLeelnKKIKDLGEEEQLRVKEKIGELEAEIASL 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 181 SRLSQEKeltERHAKWLDEELTAKVDSYAELRRRHSDLESEMSAKLVDVEK---NYIECSSSLNWHKERLRELETKIGSL 257
Cdd:TIGR02169 307 ERSIAEK---ERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKlteEYAELKEELEDLRAELEEVDKEFAET 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 258 QEDLSSCKDAAttteEQYTAELFTANKLVDLYKESSEEWSRKAGELEGVIKALEARLSQVESSyKERLDKEVSTKqllEK 337
Cdd:TIGR02169 384 RDELKDYREKL----EKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEE-KEDKALEIKKQ---EW 455
|
250 260
....*....|....*....|..
gi 334184013 338 ENGDLKQKLEKCEAEIEKTRKT 359
Cdd:TIGR02169 456 KLEQLAADLSKYEQELYDLKEE 477
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
968-1479 |
6.37e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.23 E-value: 6.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 968 ELRTAKEEIEKLRGevessKSHMLQYKSIAQVNEtALKQMESAHENFRlEAEKRQRSLEAELVSLRERVSELENDCIQKS 1047
Cdd:COG4717 50 RLEKEADELFKPQG-----RKPELNLKELKELEE-ELKEAEEKEEEYA-ELQEELEELEEELEELEAELEELREELEKLE 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1048 EQLAtaaagkedaLLSASAEIASLREEnlvkksqIEAMNIQMSTLKNDLETEHEkWRVAQRNYERQVILLSETIQELTK- 1126
Cdd:COG4717 123 KLLQ---------LLPLYQELEALEAE-------LAELPERLEELEERLEELRE-LEEELEELEAELAELQEELEELLEq 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1127 -TSQALAALQEEASELRKLADARGIENSELnAKWSEEKLMLEQQKNLAEKKYHELNEQNKLLHSRLEAKHLnsaeknsrs 1205
Cdd:COG4717 186 lSLATEEELQDLAEELEELQQRLAELEEEL-EEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIA--------- 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1206 GTISSGSTDSDHLEDSGLQRVVHYLRRTKEIAETEISLMRQEKLRLQSQLESALKMAESARGSLTAERASTRASLLTDDG 1285
Cdd:COG4717 256 AALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLS 335
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1286 IKSLQLQVSEMNLLRESNMQLREENKHNFEKC--QEMREVAQKARMESEN-FENLLKTKQTELDLcMKEMEKLRMETDLH 1362
Cdd:COG4717 336 PEELLELLDRIEELQELLREAEELEEELQLEEleQEIAALLAEAGVEDEEeLRAALEQAEEYQEL-KEELEELEEQLEEL 414
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1363 KKRVDELRETyrnidiADYNRLKDEVRQLEEKLKAKDAHAEDCKKVLLEKQNKISLLEKeltnckkdlserEKRLDDAQQ 1442
Cdd:COG4717 415 LGELEELLEA------LDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEE------------DGELAELLQ 476
|
490 500 510
....*....|....*....|....*....|....*..
gi 334184013 1443 AQATMQSEFNKQKQELEKNKKIHYTLNMTKRKYEKEK 1479
Cdd:COG4717 477 ELEELKAELRELAEEWAALKLALELLEEAREEYREER 513
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1230-1613 |
6.82e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.12 E-value: 6.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1230 LRRTKEIAETEISLMRQEKLRLQSQLESALKMAESARGSLTAERASTRASLLTDDGIKSLQLQVSEM-----NLLRESNM 1304
Cdd:TIGR00606 749 LRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLqgsdlDRTVQQVN 828
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1305 QLREENKHNFEKCQEMREVAQKARMESENFENLLKTKQTELdlcmkEMEKLRMETDLHKKRvdelretyrnidiadynrl 1384
Cdd:TIGR00606 829 QEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNEL-----KSEKLQIGTNLQRRQ------------------- 884
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1385 kdevrQLEEKLKAKDAHAEDCKKVLLEKQNKISLLEKELtncKKDLSEREKRLDDAQQAQATMQSEFNKQKQELeknKKI 1464
Cdd:TIGR00606 885 -----QFEEQLVELSTEVQSLIREIKDAKEQDSPLETFL---EKDQQEKEELISSKETSNKKAQDKVNDIKEKV---KNI 953
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1465 HYTLNMTKRKYEKEKDELSKQNQSLAKQLEEAKEEAGKRtttdavveqsvKEREEKEKRIQILDKYVHQLKDEVRKKTED 1544
Cdd:TIGR00606 954 HGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKH-----------QEKINEDMRLMRQDIDTQKIQERWLQDNLT 1022
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 334184013 1545 LKKKDEELTKERSERKSVEKEVG-DSLTKIKKEKTKVDEELAKLERYQT-ALTHLSEELEKLKHADGNLPE 1613
Cdd:TIGR00606 1023 LRKRENELKEVEEELKQHLKEMGqMQVLQMKQEHQKLEENIDLIKRNHVlALGRQKGYEKEIKHFKKELRE 1093
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1430-1633 |
7.45e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.13 E-value: 7.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1430 LSEREKRLDDAQqAQATMQSEFNKQKQELEKNKKIHYTLnmtkrKYEKEKDELSKQNQSLAKQLEEAKEEAGKRTTTDAV 1509
Cdd:TIGR02168 195 LNELERQLKSLE-RQAEKAERYKELKAELRELELALLVL-----RLEELREELEELQEELKEAEEELEELTAELQELEEK 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1510 VEQSVKEREEKEKRIQILDKYVHQLKDEVRKKTEDLKKKDEELTKERSERKSVEKEVGDSLTKIKKEKTKVDEELAKLER 1589
Cdd:TIGR02168 269 LEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEE 348
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 334184013 1590 YQTALTHLSEELEKLKHADGNLPEGTSAVQVLSGSILNDQAAAY 1633
Cdd:TIGR02168 349 LKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLE 392
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1166-1529 |
1.08e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.62 E-value: 1.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1166 LEQQKNLAEKkYHELNEQNKLLHSRLEAKHLNSaeknsrsgtissgstdsdhledsglqrvvhyLRRTKEIAETEISLMR 1245
Cdd:COG1196 205 LERQAEKAER-YRELKEELKELEAELLLLKLRE-------------------------------LEAELEELEAELEELE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1246 QEKLRLQSQLESALKMAESARGSLTAERastraslltddgiKSLQLQVSEMNLLRESNMQLREENKHNFEKCQEMREVAQ 1325
Cdd:COG1196 253 AELEELEAELAELEAELEELRLELEELE-------------LELEEAQAEEYELLAELARLEQDIARLEERRRELEERLE 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1326 KARMESENFENLLKTKQTELDLCMKEMEKLRMETDLHKKRVDELRETYRnidiadynRLKDEVRQLEEKLKAKDAHAEDC 1405
Cdd:COG1196 320 ELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALL--------EAEAELAEAEEELEELAEELLEA 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1406 KKVLLEKQNKISLLEKELTNCKKDLSEREKRLDDAQQAQATMQSEFNKQKQELEKNKKIHYTLNMTKRKYEKEKDELSKQ 1485
Cdd:COG1196 392 LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE 471
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 334184013 1486 NQSLAKQLEEAKEEAGKRTTTDAVVEQSVKEREEKEKRIQILDK 1529
Cdd:COG1196 472 AALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALL 515
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1382-1577 |
1.44e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 45.69 E-value: 1.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1382 NRLKDEVRQLEEKLKAKDAHAEDCKKVLLEKQNKISLLEKELTNCKKDLSEREKRLDDAQQAQATMQSefNKQKQELekn 1461
Cdd:COG1579 20 DRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRN--NKEYEAL--- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1462 kkihytlnmtkrkyEKEKDELSKQNQSLAKQLEEAKEEagkrtttdavVEQSVKEREEKEKRIQILDKYVHQLKDEVRKK 1541
Cdd:COG1579 95 --------------QKEIESLKRRISDLEDEILELMER----------IEELEEELAELEAELAELEAELEEKKAELDEE 150
|
170 180 190
....*....|....*....|....*....|....*..
gi 334184013 1542 TEDLKKKDEELTKERSE-RKSVEKEVGDSLTKIKKEK 1577
Cdd:COG1579 151 LAELEAELEELEAEREElAAKIPPELLALYERIRKRK 187
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1363-1591 |
1.55e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.89 E-value: 1.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1363 KKRVDELRETYRNIDIADYNRLKDEVRQLEEKLKAKDAHAEDCKKVLLEKQNKISLLEKELTNCKKDLSEREKRLDDAQQ 1442
Cdd:pfam02463 172 KEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1443 AQATMQSEFNKQKQELEKNKKIHYTLNMTKRKYEKEKDELSKQNQSLAKQLEEAKEEAGKRTTTDAVVEQSVKEREEKEK 1522
Cdd:pfam02463 252 EIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELK 331
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 334184013 1523 RIQILDKYVHQLKDEVRKKTEDLKKKDEELTKERSERKSVEKEVGDSLTKIKKEKTKVDEELAKLERYQ 1591
Cdd:pfam02463 332 KEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELK 400
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1158-1588 |
1.57e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 47.09 E-value: 1.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1158 KWSEEKLMLEQQKNLAEKKYHELNEQNKLLHSRLEAKHLNSAEKNSRSGTISSGSTDsdhledsgLQRVVHYLRRTKEIA 1237
Cdd:pfam01576 16 KVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAARKQE--------LEEILHELESRLEEE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1238 ETEISLMRQEKLRLQSQ---LESALKMAESARGSLTAERASTRASlltddgIKSLQlqvSEMNLLRESNMQLREENKHNF 1314
Cdd:pfam01576 88 EERSQQLQNEKKKMQQHiqdLEEQLDEEEAARQKLQLEKVTTEAK------IKKLE---EDILLLEDQNSKLSKERKLLE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1315 EKCQEMREVAQKARMESENFeNLLKTKQ----TELDLCMKEMEKLRMETDLHKKRVD----ELRETYRNIDiADYNRLKD 1386
Cdd:pfam01576 159 ERISEFTSNLAEEEEKAKSL-SKLKNKHeamiSDLEERLKKEEKGRQELEKAKRKLEgestDLQEQIAELQ-AQIAELRA 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1387 EVRQLEEKLKAKDAHAED-------CKKVLLEKQNKISLLEKELTN----------CKKDLSER----EKRLDDAQQAQA 1445
Cdd:pfam01576 237 QLAKKEEELQAALARLEEetaqknnALKKIRELEAQISELQEDLESeraarnkaekQRRDLGEElealKTELEDTLDTTA 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1446 TMQSEFNKQKQELEKNKKihyTLNMTKRKYEKEKDELSKQNqslAKQLEEAKEEAGKRTTTDAVVEQSVKEREEKEKRIQ 1525
Cdd:pfam01576 317 AQQELRSKREQEVTELKK---ALEEETRSHEAQLQEMRQKH---TQALEELTEQLEQAKRNKANLEKAKQALESENAELQ 390
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 334184013 1526 ILDKYVHQLKDEVRKKTEDLKKKDEELTKERSERKSVEKEVGDSLTKIKKEKTKVDEELAKLE 1588
Cdd:pfam01576 391 AELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAE 453
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
1923-2086 |
1.57e-04 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 47.09 E-value: 1.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1923 EGTDVASMMRSPEKEEVQPETLA--------TPTQSPSRMETAMEEAETTieTPVEDDKTDEGGDAAEEAADIPNNANDQ 1994
Cdd:PHA03307 57 AGAAACDRFEPPTGPPPGPGTEApanesrstPTWSLSTLAPASPAREGSP--TPPGPSSPDPPPPTPPPASPPPSPAPDL 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1995 QEAPETDIKP------ETSAATTSPVSTAPTTSSTLASAITSSGAPETEDPKRAPSPGGGSSTIVTLADRAQMKRRERIA 2068
Cdd:PHA03307 135 SEMLRPVGSPgpppaaSPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPIS 214
|
170
....*....|....*...
gi 334184013 2069 NIVVSRAPNPATRGARGR 2086
Cdd:PHA03307 215 ASASSPAPAPGRSAADDA 232
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1662-1820 |
1.61e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 47.24 E-value: 1.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1662 TEPSSGIPAA-EPSTMTRVPSSTPLIKSPVATTQQLPK--VASDNKEKRLISQKPSTEF---RRPSGRRIVRPQLVKPEE 1735
Cdd:PHA03247 2817 ALPPAASPAGpLPPPTSAQPTAPPPPPGPPPPSLPLGGsvAPGGDVRRRPPSRSPAAKPaapARPPVRRLARPAVSRSTE 2896
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1736 SPKVDVDMPEAEGTGDEGKQPAAHEPESQVTTSVRPVQTLVRKR-------------QADSLVSEPQQDSLTQGE---TS 1799
Cdd:PHA03247 2897 SFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQpplapttdpagagEPSGAVPQPWLGALVPGRvavPR 2976
|
170 180
....*....|....*....|..
gi 334184013 1800 SEIAPPA-SKKAKGSESHPDTS 1820
Cdd:PHA03247 2977 FRVPQPApSREAPASSTPPLTG 2998
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
682-1549 |
2.09e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.67 E-value: 2.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 682 EATKRAQEKAFERIRILEEDFAKARSEVIAIRSERDKLAMEANFAREKLEGIMKESERKREEMNSVL-ARNIEFSQLIID 760
Cdd:PTZ00121 1155 EIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEdAKKAEAVKKAEE 1234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 761 HQRKLRES--SESLHAAEEISRKLSMEVSVLKQEKELLSNAEKRASDEVSALSQRvyrlqATLDTVQSTEEVREETRAAE 838
Cdd:PTZ00121 1235 AKKDAEEAkkAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEK-----KKADEAKKAEEKKKADEAKK 1309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 839 RRKQEEHIKQLQREWAEAKKELQEERSNARDftsdrnqtlnnAVMQVEEMGKELANALKAVSVAESRASVAEARLSDLEK 918
Cdd:PTZ00121 1310 KAEEAKKADEAKKKAEEAKKKADAAKKKAEE-----------AKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK 1378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 919 KIRSSDPKTLDM---DSGGIVSLSDKEAAlviilDVVHKIQAGFRIGSAMSIELRTAKEEIEKLRGEVESSKSHMLQYKs 995
Cdd:PTZ00121 1379 KADAAKKKAEEKkkaDEAKKKAEEDKKKA-----DELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKK- 1452
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 996 iAQVNETALKQMESAHENFRLEAEKRQRSLEAELVSLRERVSELEndciQKSEQLATAAAGKEDALLSASAEIASLREEn 1075
Cdd:PTZ00121 1453 -AEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAK----KKADEAKKAAEAKKKADEAKKAEEAKKADE- 1526
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1076 lVKKSQieamniqmstlkndletEHEKWRVAQRNYERQVILLSETIQELTKTSQALAALQEEASELRKLADARGIEnsel 1155
Cdd:PTZ00121 1527 -AKKAE-----------------EAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAE---- 1584
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1156 NAKWSEEKLMLEQQKNLAEKKYHELNEQNKLLHSRLEAKHLNSAEKNSRSGTISSGSTDSDHLEDSGLQRvvhylrrtke 1235
Cdd:PTZ00121 1585 EAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKK---------- 1654
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1236 iaETEISLMRQEKLRLQSQLESalKMAESARGSLTAERASTRASLL-TDDGIKSLQLQVSEMNLLRESNmQLREENKHNF 1314
Cdd:PTZ00121 1655 --AEEENKIKAAEEAKKAEEDK--KKAEEAKKAEEDEKKAAEALKKeAEEAKKAEELKKKEAEEKKKAE-ELKKAEEENK 1729
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1315 EKCQEMREVAQKArmesenfenllKTKQTELDLCMKEMEKLRMETDLHKKRVDELRETYRNIdIADYNRLKDEVRQLEEK 1394
Cdd:PTZ00121 1730 IKAEEAKKEAEED-----------KKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAV-IEEELDEEDEKRRMEVD 1797
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1395 LKAKDahAEDCKKVLLEKQNKISLLekeLTNCKKDLSEREKRLDDAQQAQATMQSEFNKQKQEL--EKNKKIHYTLNMTK 1472
Cdd:PTZ00121 1798 KKIKD--IFDNFANIIEGGKEGNLV---INDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKnnENGEDGNKEADFNK 1872
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 334184013 1473 RKYEKEKDELSKQNQSLAKQLEEAKEEAGKRTTTDAvveqsVKEREEKEKRIQIlDKYVHQLKDEVRKKTEDLKKKD 1549
Cdd:PTZ00121 1873 EKDLKEDDEEEIEEADEIEKIDKDDIEREIPNNNMA-----GKNNDIIDDKLDK-DEYIKRDAEETREEIIKISKKD 1943
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
57-355 |
2.10e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.60 E-value: 2.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 57 LEQKYLSLSQDFSSLESQNAKLQSdfddrlaELAQSQAQKHQLHLQSIEKDGEVERMSTEMSELHKSKRQLMELLEQKDA 136
Cdd:TIGR02169 672 EPAELQRLRERLEGLKRELSSLQS-------ELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEE 744
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 137 EISEKNSTIKSYLDKIVKLTDTSSEKEARLAEATAELARSQAMCSR------LSQEKELTERHAKWldEELTAKVDsyAE 210
Cdd:TIGR02169 745 DLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHsripeiQAELSKLEEEVSRI--EARLREIE--QK 820
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 211 LRRRHSDLESEMSAKLVDVEKNyIECSSSLNWHKERLRELETKIGSLQEDLSSCKDAATTTEEQYT----------AELF 280
Cdd:TIGR02169 821 LNRLTLEKEYLEKEIQELQEQR-IDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGdlkkerdeleAQLR 899
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 334184013 281 TANKLVDLYKESSEEWSRKAGELEGVIKALEARLSQVESSYKErlDKEVSTKQLLEkenGDLKQKLEKCEAEIEK 355
Cdd:TIGR02169 900 ELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGE--DEEIPEEELSL---EDVQAELQRVEEEIRA 969
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
109-713 |
2.23e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.60 E-value: 2.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 109 EVERMSTEMSELHKSKRQLMELLEQKDAEISEKNSTIKSYLDKIVKLtdtsSEKEARLAEATAELARSQAMCSRLSQEKE 188
Cdd:PRK03918 173 EIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPEL----REELEKLEKEVKELEELKEEIEELEKELE 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 189 LTERHAKWLDEELTAKVDSYAELRRRHSDLES--EMSAKLVDVEKNYIECSSSLNWHKERLRELETKIGSLQEDLSSCKD 266
Cdd:PRK03918 249 SLEGSKRKLEEKIRELEERIEELKKEIEELEEkvKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEE 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 267 aattteeqytaelftanKLVDLykessEEWSRKAGELEGVIKALEARLSQVESS---YKERLDKEVSTKQLLEKENGDLK 343
Cdd:PRK03918 329 -----------------RIKEL-----EEKEERLEELKKKLKELEKRLEELEERhelYEEAKAKKEELERLKKRLTGLTP 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 344 QKLEKCEAEIEKTRKTDELNLIPFSNFTRRVDNSGTSNM--IEESQAVISKVPagVSGTALA----ASLLRD-GWSLAKI 416
Cdd:PRK03918 387 EKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKkaIEELKKAKGKCP--VCGRELTeehrKELLEEyTAELKRI 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 417 YEKYQEAVDAMRHEQLGRKEAEMIL--QRVLSELEEKAGFIQEERGEYERVVEayclvnQKLQDSVSEQSNMEKFIMELK 494
Cdd:PRK03918 465 EKELKEIEEKERKLRKELRELEKVLkkESELIKLKELAEQLKELEEKLKKYNL------EELEKKAEEYEKLKEKLIKLK 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 495 ADLRRREREntllQKDISDLQKQVTILLKECRDVQLRcgaardddeddyplLSDVEMEMESEADKIISEHLLKFKDINGL 574
Cdd:PRK03918 539 GEIKSLKKE----LEKLEELKKKLAELEKKLDELEEE--------------LAELLKELEELGFESVEELEERLKELEPF 600
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 575 VEQNVKLRNLVRslseQIESRETELKetfevDLKNKTDEASAKVATVLKRAEEQGQMIESLHT--SVAMYKRLYEEEQKL 652
Cdd:PRK03918 601 YNEYLELKDAEK----ELEREEKELK-----KLEEELDKAFEELAETEKRLEELRKELEELEKkySEEEYEELREEYLEL 671
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 334184013 653 HSSDSRSSDLSPAVVPGRKNFLHLLEDSEEaTKRAQEKAFERIRILEedfaKARSEVIAIR 713
Cdd:PRK03918 672 SRELAGLRAELEELEKRREEIKKTLEKLKE-ELEEREKAKKELEKLE----KALERVEELR 727
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
836-1152 |
2.30e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 46.49 E-value: 2.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 836 AAERRKQEEHIKQLQREWAEAKKELQEERSNARDFT--------------------SDRNQTLNNAVMQVEEMGKELANA 895
Cdd:PRK04863 278 ANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMArelaelneaesdleqdyqaaSDHLNLVQTALRQQEKIERYQADL 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 896 LKAVSVAESRASV---AEARLSDLEKKIRSSDPKTLDMDSGgivsLSDKEAAlviiLDVVHK--------IQAGFRIGS- 963
Cdd:PRK04863 358 EELEERLEEQNEVveeADEQQEENEARAEAAEEEVDELKSQ----LADYQQA----LDVQQTraiqyqqaVQALERAKQl 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 964 --AMSIELRTAKEEIEKLRGEVESSKSHMLQYKSIAQVNETALKQME----------------SAHENFR--LEAEKRQR 1023
Cdd:PRK04863 430 cgLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEqayqlvrkiagevsrsEAWDVARelLRRLREQR 509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1024 SLEAELVSLRERVSELENDCI--QKSEQLATAAAGKEDALLSASAEIASLREEnlvKKSQIEAMNIQMSTLkndletehe 1101
Cdd:PRK04863 510 HLAEQLQQLRMRLSELEQRLRqqQRAERLLAEFCKRLGKNLDDEDELEQLQEE---LEARLESLSESVSEA--------- 577
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 334184013 1102 kwrVAQRNYERQVI-LLSETIQELTKTSQALAALQEEASELR-----KLADARGIEN 1152
Cdd:PRK04863 578 ---RERRMALRQQLeQLQARIQRLAARAPAWLAAQDALARLReqsgeEFEDSQDVTE 631
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1238-1606 |
2.49e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.21 E-value: 2.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1238 ETEISLMRQEKLRLQ---SQLESALKMAESARGSLTAERASTRAsllTDDGIKSLQLQVSEMnllrESNMQLREENKHNF 1314
Cdd:PRK03918 220 REELEKLEKEVKELEelkEEIEELEKELESLEGSKRKLEEKIRE---LEERIEELKKEIEEL----EEKVKELKELKEKA 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1315 EKCQEMREVAQKARMESENFENLLKTKQTELDLCMKEMEKLRMEtdlhKKRVDELRETYRNIDiADYNRLKDEVRQLEEk 1394
Cdd:PRK03918 293 EEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEK----EERLEELKKKLKELE-KRLEELEERHELYEE- 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1395 LKAKDAHAEDCKKVLleKQNKISLLEKELTNCKKDLSEREKRLDDAQQAQATMQSEFNKQKQELEKNKKIHYTLNMTKR- 1473
Cdd:PRK03918 367 AKAKKEELERLKKRL--TGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRe 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1474 -----------KYEKEKDELSKQNQSLAKQLEEAKEEAGKRTTTDAVVEQSVKEREEKEKRIQILDKYVHQLKDEVRKKT 1542
Cdd:PRK03918 445 lteehrkelleEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKA 524
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 334184013 1543 EDLKKKDEELTKERSERKSVEKEVgDSLTKIKKEKTKVDEELAKLEryqtalthlsEELEKLKH 1606
Cdd:PRK03918 525 EEYEKLKEKLIKLKGEIKSLKKEL-EKLEELKKKLAELEKKLDELE----------EELAELLK 577
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
726-1339 |
2.51e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.21 E-value: 2.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 726 AREKLEGIMKESERKREEMNSVLARNIEFSQLIIDHQRKLresseslhaaEEISRKLSmevsvlkqekeLLSNAEKRASD 805
Cdd:PRK03918 163 AYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKEL----------EEVLREIN-----------EISSELPELRE 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 806 EVSALSQRVYRLQATLDTVQSTEEvREETRAAERRKQEEHIKQLQREWAEAKKELQEERSNARDFTSdrnqtLNNAVMQV 885
Cdd:PRK03918 222 ELEKLEKEVKELEELKEEIEELEK-ELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKE-----LKEKAEEY 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 886 EEMGKELANALKAVSVAESRASVAEARLSDLEKKIRssdpktldmdsggivSLSDKEAalviildvvhkiqagfrigsam 965
Cdd:PRK03918 296 IKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIK---------------ELEEKEE---------------------- 338
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 966 siELRTAKEEIEKLRGEVESSKSHMLQYKSIAQVNETA--LKQMESAHENFRL-----EAEKRQRSLEAELVSLRERVSE 1038
Cdd:PRK03918 339 --RLEELKKKLKELEKRLEELEERHELYEEAKAKKEELerLKKRLTGLTPEKLekeleELEKAKEEIEEEISKITARIGE 416
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1039 LENDCIQKSEQLATAAAGKEDALLsASAEIASLREENLVKK-----SQIEAMNIQMSTLKNDLETEHEKWRVAqRNYERQ 1113
Cdd:PRK03918 417 LKKEIKELKKAIEELKKAKGKCPV-CGRELTEEHRKELLEEytaelKRIEKELKEIEEKERKLRKELRELEKV-LKKESE 494
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1114 VILLSETIQELTKTSQALAA-----LQEEASELRKLAD-ARGIENSELNAKWSEEKL-MLEQQKNLAEKKYHELNEQNKL 1186
Cdd:PRK03918 495 LIKLKELAEQLKELEEKLKKynleeLEKKAEEYEKLKEkLIKLKGEIKSLKKELEKLeELKKKLAELEKKLDELEEELAE 574
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1187 LHSRLEAKHLNSAEKNSRsgtiSSGSTDSDHLEDSGLQRVVHYLRRTKE---IAETEISLMRQEKLRLQSQLESALKMAE 1263
Cdd:PRK03918 575 LLKELEELGFESVEELEE----RLKELEPFYNEYLELKDAEKELEREEKelkKLEEELDKAFEELAETEKRLEELRKELE 650
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 334184013 1264 SARGSLTAERASTRASLLTddgikSLQLQVSEMNLLRESNMQLREENKHNFEKCQEMREVAQKARMESENFENLLK 1339
Cdd:PRK03918 651 ELEKKYSEEEYEELREEYL-----ELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALE 721
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1350-1514 |
2.69e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 45.92 E-value: 2.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1350 KEMEKLRMETDLH-KKRVDELRETYRNidiaDYNRLKDEVRQLEEKLKAKDAHAEDCKKVLLEKQNKISLLEKELTNCKK 1428
Cdd:PRK12704 49 KEAEAIKKEALLEaKEEIHKLRNEFEK----ELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQ 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1429 DLSEREKRLDDAQQaqatmqsefnKQKQELEKnkkihyTLNMTK---RKY--EKEKDELSKQNQSLAKQLE-EAKEEAGK 1502
Cdd:PRK12704 125 ELEKKEEELEELIE----------EQLQELER------ISGLTAeeaKEIllEKVEEEARHEAAVLIKEIEeEAKEEADK 188
|
170 180
....*....|....*....|...
gi 334184013 1503 -----------RTTTDAVVEQSV 1514
Cdd:PRK12704 189 kakeilaqaiqRCAADHVAETTV 211
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1429-1591 |
2.79e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.53 E-value: 2.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1429 DLSEREKRLDDAQQAQATMQSEFNKQKQELEKNKKIHYTLNMTKRKYEKEKDELSKQNQSLAKQLEEAKEEAGKRTTTDA 1508
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1509 V------VEQSVKEREEKEKRIQILDKYVHQLKDEVRKKTEDLKKKDEELTKERSERKSVEKEVGDSLTKIKKEKTKVDE 1582
Cdd:COG1579 91 YealqkeIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAA 170
|
170
....*....|.
gi 334184013 1583 ELAK--LERYQ 1591
Cdd:COG1579 171 KIPPelLALYE 181
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
954-1588 |
3.41e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 45.84 E-value: 3.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 954 KIQAGFRIGSAMSI-----ELRTAKEEIEKLRGEVESSKSHMLQYKSIAQVNETALKQmeSAHENFrlEAEKRQRSLEAE 1028
Cdd:COG5022 792 KWRLFIKLQPLLSLlgsrkEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQ--KFGRSL--KAKKRFSLLKKE 867
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1029 LVSLRervselendCIQKSEQLATAAAGKEDAllsaSAEIASLREENLVKKSQIEAMNIQMST---LKNDLETEHEKwRV 1105
Cdd:COG5022 868 TIYLQ---------SAQRVELAERQLQELKID----VKSISSLKLVNLELESEIIELKKSLSSdliENLEFKTELIA-RL 933
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1106 AQRNYERQVILLSEtiQELTKTSQaLAALQEEASELRKLADARGIENSELNAKWSEEKLMLEQQKNLaEKKYHELNEQNK 1185
Cdd:COG5022 934 KKLLNNIDLEEGPS--IEYVKLPE-LNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNF-KKELAELSKQYG 1009
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1186 LLH---SRLEAKHLNSAEKNSRSGTISSGSTdsdhledsglqrvvhYLRRTKEIAETEISLMrQEKLRLQSQLESALKMA 1262
Cdd:COG5022 1010 ALQestKQLKELPVEVAELQSASKIISSEST---------------ELSILKPLQKLKGLLL-LENNQLQARYKALKLRR 1073
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1263 ESARGSLTAER--ASTRASLLTddgIKSLQLQVSEMNLLRESNmqlrEENKH-----NFEKCQEMREVAQKARMESENFE 1335
Cdd:COG5022 1074 ENSLLDDKQLYqlESTENLLKT---INVKDLEVTNRNLVKPAN----VLQFIvaqmiKLNLLQEISKFLSQLVNTLEPVF 1146
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1336 NLLKTKQTELDLCMKEMEKLRMETDLHKKRVDELRETYRNIDIADYNRLKDEVRQLEEKLKA--KDAHAEDCKKVLLEKQ 1413
Cdd:COG5022 1147 QKLSVLQLELDGLFWEANLEALPSPPPFAALSEKRLYQSALYDEKSKLSSSEVNDLKNELIAlfSKIFSGWPRGDKLKKL 1226
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1414 NKISLLEKELTNCKKDLSEREKRLDdaqqAQATMQSEfnkqkQELEKNKKIHYTLNMTKRKYEKEKDELSKQNQSLAKQL 1493
Cdd:COG5022 1227 ISEGWVPTEYSTSLKGFNNLNKKFD----TPASMSNE-----KLLSLLNSIDNLLSSYKLEEEVLPATINSLLQYINVGL 1297
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1494 EEA---KEEAGKRTTTDAVvEQSVKEREEKEKRIQILDKYVHQLKDEVRKKTEDLKKKDEEltkERSERKSVEKEVGDSL 1570
Cdd:COG5022 1298 FNAlrtKASSLRWKSATEV-NYNSEELDDWCREFEISDVDEELEELIQAVKVLQLLKDDLN---KLDELLDACYSLNPAE 1373
|
650
....*....|....*...
gi 334184013 1571 TKIKKEKTKVDEELAKLE 1588
Cdd:COG5022 1374 IQNLKSRYDPADKENNLP 1391
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1232-1499 |
3.92e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.50 E-value: 3.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1232 RTKEIAeTEISLMRQ-EKLRLQSQLESalkmaESARGSLTAERastRASLLTDDGIKSLQLQVSEMNLLRESNMQLREEn 1310
Cdd:pfam17380 366 RQEEIA-MEISRMRElERLQMERQQKN-----ERVRQELEAAR---KVKILEEERQRKIQQQKVEMEQIRAEQEEARQR- 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1311 khnfekcqEMRevaqkaRMESENFENLLKTKQTELDLcMKEMEKLRMETDLHKKRVDELRETYRNIDIADYNRLKDEVRQ 1390
Cdd:pfam17380 436 --------EVR------RLEEERAREMERVRLEEQER-QQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKE 500
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1391 LEEKlkakdahaedcKKVLLEKQNKISLLEKELTNCKKDLSEREKRlddaqqaqaTMQSEFNKQKQELEKNKKIHYtlNM 1470
Cdd:pfam17380 501 LEER-----------KQAMIEEERKRKLLEKEMEERQKAIYEEERR---------REAEEERRKQQEMEERRRIQE--QM 558
|
250 260
....*....|....*....|....*....
gi 334184013 1471 TKRKYEKEKDELSKQNQSLAKQLEEAKEE 1499
Cdd:pfam17380 559 RKATEERSRLEAMEREREMMRQIVESEKA 587
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
8-225 |
4.54e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 4.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 8 EELARLSSDAASVVAERADeyIRKIYAELDSVRAKADAASITAEQTCSLLEQKYLSLSQDFSSLESQNAKLQSDFDDRLA 87
Cdd:COG4942 27 AELEQLQQEIAELEKELAA--LKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 88 ELAQ--SQAQKHQLH-----LQSIEKDGEVERMSTEMSELHKSKRQLMELLEQKDAEISEKNSTIKSYLDKIVKLTDTSS 160
Cdd:COG4942 105 ELAEllRALYRLGRQpplalLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELE 184
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 334184013 161 EKEARLAEATAELARSQAmcsRLSQEKELTErhakwldEELTAKVDSYAELRRRHSDLESEMSAK 225
Cdd:COG4942 185 EERAALEALKAERQKLLA---RLEKELAELA-------AELAELQQEAEELEALIARLEAEAAAA 239
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1381-1608 |
4.79e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.31 E-value: 4.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1381 YNRLKDEVRQLEEKLKAkdAHAEDCKKVLLEKQNKISLLEKELTNCKKDLSEREKRLDDAQQAQATMQSEFNKQKQELek 1460
Cdd:COG1196 215 YRELKEELKELEAELLL--LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEE-- 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1461 nkkihytlnmtkRKYEKEKDELSKQNQSLAKQLEEAKEEagkrtttdavveqsvkeREEKEKRIQILDKYVHQLKDEVRK 1540
Cdd:COG1196 291 ------------YELLAELARLEQDIARLEERRRELEER-----------------LEELEEELAELEEELEELEEELEE 341
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 334184013 1541 KTEDLKKKDEELTKERSERKSVEKEVgdsLTKIKKEKTKVDEELAKLERYQTALTHLSEELEKLKHAD 1608
Cdd:COG1196 342 LEEELEEAEEELEEAEAELAEAEEAL---LEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELE 406
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1359-1607 |
4.94e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 45.28 E-value: 4.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1359 TDLHKKRVDELRETYRNidiaDYNRLKDEVRQLEEKLKAKDAHAEDCKKVL--LEKQ---------NKISLLEKELTNCK 1427
Cdd:PRK01156 460 TTLGEEKSNHIINHYNE----KKSRLEEKIREIEIEVKDIDEKIVDLKKRKeyLESEeinksineyNKIESARADLEDIK 535
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1428 KDLSEREKRLDDAQQAQatmqSEFNKQKQELEKNKKIHYTLNMTKRK------YEKEKDELSKQNQSLAKQLEEAKEEAg 1501
Cdd:PRK01156 536 IKINELKDKHDKYEEIK----NRYKSLKLEDLDSKRTSWLNALAVISlidietNRSRSNEIKKQLNDLESRLQEIEIGF- 610
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1502 krTTTDAVVEQSVKEREEKEKRIQILDKYVHQLK---DEVRKKTEDLKKKDEELTKERSERKSVEKEVGDSLTKIKKEKT 1578
Cdd:PRK01156 611 --PDDKSYIDKSIREIENEANNLNNKYNEIQENKiliEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRK 688
|
250 260
....*....|....*....|....*....
gi 334184013 1579 KVDEELAKLERYQTALTHLSEELEKLKHA 1607
Cdd:PRK01156 689 ALDDAKANRARLESTIEILRTRINELSDR 717
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1365-1613 |
5.05e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.29 E-value: 5.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1365 RVDELREtyrniDIADYNRLKDEVRQLEEKLKAKDAHAEDCKKvLLEKQNKISLLEKELTncKKDLSEREKRLDDAQQAQ 1444
Cdd:COG4913 226 AADALVE-----HFDDLERAHEALEDAREQIELLEPIRELAER-YAAARERLAELEYLRA--ALRLWFAQRRLELLEAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1445 ATMQSEFNKQKQELEKNKKihytlnmTKRKYEKEKDELSKQ-NQSLAKQLEEAKEEagkrtttdavVEQSVKEREEKEKR 1523
Cdd:COG4913 298 EELRAELARLEAELERLEA-------RLDALREELDELEAQiRGNGGDRLEQLERE----------IERLERELEERERR 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1524 IQILDKYVHQLKDEVRKKTEDLKKKDEELTKERSERKSVEKEVGDSLTKIKKEKTKVDEELAKLEryqtalthlsEELEK 1603
Cdd:COG4913 361 RARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELE----------AEIAS 430
|
250
....*....|
gi 334184013 1604 LKHADGNLPE 1613
Cdd:COG4913 431 LERRKSNIPA 440
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1232-1603 |
5.65e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.03 E-value: 5.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1232 RTKEIAETEISLMRQEKLRLQSQLESALkmAESARGSLTAERASTRASLLTDDGIK----------SLQLQVSEMNLLRE 1301
Cdd:PRK02224 272 REREELAEEVRDLRERLEELEEERDDLL--AEAGLDDADAEAVEARREELEDRDEElrdrleecrvAAQAHNEEAESLRE 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1302 SNMQLREENKHNFEKCQEMREVAQKARMESENFENLLKTKQTELDLCMKE--------------MEKLRMETDLHKKRVD 1367
Cdd:PRK02224 350 DADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERfgdapvdlgnaedfLEELREERDELREREA 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1368 ELRETYRNID--IADYNRLKDE---------------VRQLEEKLKAKDAHAEDckkvLLEKQNKISLLEKELTNCKkDL 1430
Cdd:PRK02224 430 ELEATLRTARerVEEAEALLEAgkcpecgqpvegsphVETIEEDRERVEELEAE----LEDLEEEVEEVEERLERAE-DL 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1431 SEREKRLDDAQQAQATMQSEFNKQKQELEKNKKIHYTLNMTKRKYEKEKDELSKQNQSLAKQLEEAKEEAGKRTTTDAVV 1510
Cdd:PRK02224 505 VEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAEL 584
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1511 EQSVKEREEKEKRIQILDKYVHQLkDEVRKKTEDLKKKDE---ELTKERSERKS-VEKEV-GDSLTKIKKEKTKVDEELA 1585
Cdd:PRK02224 585 KERIESLERIRTLLAAIADAEDEI-ERLREKREALAELNDerrERLAEKRERKReLEAEFdEARIEEAREDKERAEEYLE 663
|
410
....*....|....*...
gi 334184013 1586 KLERYQTALTHLSEELEK 1603
Cdd:PRK02224 664 QVEEKLDELREERDDLQA 681
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1315-1567 |
6.07e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 44.89 E-value: 6.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1315 EKCQEMREVAQKARMESENFENLLKTKQTELDLCMKEMEKLRMETDLHKKRVDELRE-----TYRNIDI-ADYNRLKDEV 1388
Cdd:pfam07888 80 SRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQRAAHEARIRELEEdiktlTQRVLEReTELERMKERA 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1389 RQLEEKLKAKDAHAEDCKKVLLEKQNKISLLEKELTNCKKDLSEREKRLDDAQQAQATMQSEFNKQKQELEKNKKIHYTL 1468
Cdd:pfam07888 160 KKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEEL 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1469 -------NMTKRKYEKEKDELSK---QNQSLAKQLEEAKEEAGKrtTTDAVVEQSVKEREEK---EKRIQILDKYVHQLK 1535
Cdd:pfam07888 240 rslqerlNASERKVEGLGEELSSmaaQRDRTQAELHQARLQAAQ--LTLQLADASLALREGRarwAQERETLQQSAEADK 317
|
250 260 270
....*....|....*....|....*....|..
gi 334184013 1536 DEVRKKTEDLKKKDEELTKERSERKSVEKEVG 1567
Cdd:pfam07888 318 DRIEKLSAELQRLEERLQEERMEREKLEVELG 349
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1010-1200 |
6.14e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 6.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1010 AHENFRLEAEKRQRSLEAELVSLRERVSELENDCIQKSEQLATAaagkEDALLSASAEIASLREENLVKKSQIEAMNIQM 1089
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAAL----ERRIAALARRIRALEQELAALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1090 STLKNDLETEHEK--------WRVAQRNY-------------ERQVILLSETIQELTKTSQALAALQEEASELRKLADAR 1148
Cdd:COG4942 93 AELRAELEAQKEElaellralYRLGRQPPlalllspedfldaVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 334184013 1149 GIENSELNAKWSEEKLMLEQQKNLAEKKYHELNEQNKLLHSRLEAKHLNSAE 1200
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEE 224
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
753-1459 |
9.05e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.72 E-value: 9.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 753 EFSQLIIDHQRKLRESSEsLHAAEEISRK-----LSMEVSVLKQEKELLSNAEKRASDEVSALSQRvyrLQATLDTVQST 827
Cdd:pfam15921 82 EYSHQVKDLQRRLNESNE-LHEKQKFYLRqsvidLQTKLQEMQMERDAMADIRRRESQSQEDLRNQ---LQNTVHELEAA 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 828 EEVREETRaaerRKQEEHIKQLQREWAEAKKELQEERSNARDFTSDRNQTL----NNAVMQVEEMGKELANALKA----V 899
Cdd:pfam15921 158 KCLKEDML----EDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIyehdSMSTMHFRSLGSAISKILREldteI 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 900 SVAESRASVAEARLSDLEKKIRSSDPKTLDMDSGGIVSLSDKEAalVIILDVVHKIQAGFRIGSAMSIELRTAKEEIekl 979
Cdd:pfam15921 234 SYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHE--VEITGLTEKASSARSQANSIQSQLEIIQEQA--- 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 980 RGEVESSKSHMLQYKSIAQVNETALKQMESAHENFRLEAEKRQRSLEAELVSLRERVSELENDCIQKSEQLATAAAG--K 1057
Cdd:pfam15921 309 RNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADlhK 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1058 EDALLSASAE---------------IASLREENLVKKSQIEAMNIQMSTLKNDLETEHEKWRVAQRNYERQVILLSETIQ 1122
Cdd:pfam15921 389 REKELSLEKEqnkrlwdrdtgnsitIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTA 468
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1123 ELTKTSQALAALQEEASELRKLADARGIENSELNAKWSEEKLMLEQQKNLAEKKYHELN-EQNKLLHSRLEAKHLNSAEK 1201
Cdd:pfam15921 469 QLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDlKLQELQHLKNEGDHLRNVQT 548
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1202 nsrsgtissgSTDSDHLEDSGLQRVVHYLRRTKEIAETEISLMRQEKLRLQSQLESALKMAESARGSLTAERASTRASll 1281
Cdd:pfam15921 549 ----------ECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKK-- 616
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1282 tDDGIKSLQLQVSEM-----NLLRESNMQLREENKHNFEKCQEMREVaQKARME----SENFENLLKTKQTELDLCMKEM 1352
Cdd:pfam15921 617 -DAKIRELEARVSDLelekvKLVNAGSERLRAVKDIKQERDQLLNEV-KTSRNElnslSEDYEVLKRNFRNKSEEMETTT 694
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1353 EKLRMETDLHKKRVDELRETYRNIDIADYNRLKDEVrQLEEKLKAKDAHAEDCkkvllekQNKISLLEKELTNCKKDLSE 1432
Cdd:pfam15921 695 NKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAM-GMQKQITAKRGQIDAL-------QSKIQFLEEAMTNANKEKHF 766
|
730 740
....*....|....*....|....*..
gi 334184013 1433 REKRLDDAQQAQATMQSEFNKQKQELE 1459
Cdd:pfam15921 767 LKEEKNKLSQELSTVATEKNKMAGELE 793
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1361-1561 |
9.93e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.00 E-value: 9.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1361 LHKKRVDELRETYRNIdiadynrLKDEVRQLEEKLKAKDAHAEDckkvllEKQNKISLLEKELTNCKKDLSEREKRLdda 1440
Cdd:PRK12704 28 IAEAKIKEAEEEAKRI-------LEEAKKEAEAIKKEALLEAKE------EIHKLRNEFEKELRERRNELQKLEKRL--- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1441 qqaqatmqsefnKQKQELEKNKKihytlnmtkRKYEKEKDELSKQNQSLAKQLEEAKEeagKRTTTDAVVEQSVKEREE- 1519
Cdd:PRK12704 92 ------------LQKEENLDRKL---------ELLEKREEELEKKEKELEQKQQELEK---KEEELEELIEEQLQELERi 147
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 334184013 1520 -----KEKRIQILDkyvhQLKDEVRKKTEDLKKKDEELTKERSERKS 1561
Cdd:PRK12704 148 sgltaEEAKEILLE----KVEEEARHEAAVLIKEIEEEAKEEADKKA 190
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
836-1060 |
1.25e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 1.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 836 AAERRKQEEHIKQLQREWAEAKKELQEERSNARDFTSDR---NQTLNNAVMQVEEMGKELANALKAVSVAESRASVAEAR 912
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLaalERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 913 LSDLEKKIRSSDPKTLDMDSGGIVSL---SDKEAALVIILDVVHKIQAGFRigsAMSIELRTAKEEIEKLRGEVESSKSH 989
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALllsPEDFLDAVRRLQYLKYLAPARR---EQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 334184013 990 MLQYKSIAQVNETALKQMESAHENFRLEAEKRQRSLEAELVSLRERVSELENDcIQKSEQLATAAAGKEDA 1060
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL-IARLEAEAAAAAERTPA 245
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1219-1565 |
1.44e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.57 E-value: 1.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1219 EDSGLQRVVHYLRRTKEIAETEIS--LMRQEKLRLQSQLESALKMAESARGSLTAERAStRASLLTDDGIKSLQLQVSeM 1296
Cdd:pfam17380 267 ENEFLNQLLHIVQHQKAVSERQQQekFEKMEQERLRQEKEEKAREVERRRKLEEAEKAR-QAEMDRQAAIYAEQERMA-M 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1297 NLLRESNMQLREENKHNFEKCQEmrevaQKARMESENfenllktkqteldlcMKEMEKLRMETDLHKKRVDELRETYRNI 1376
Cdd:pfam17380 345 ERERELERIRQEERKRELERIRQ-----EEIAMEISR---------------MRELERLQMERQQKNERVRQELEAARKV 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1377 DIADYNRLKDEVRQLEEKLKAKDAHAEdckkvllEKQNKISLLEKEltnckkdlseREKRLDDAQQAQATMQSEFNKQKQ 1456
Cdd:pfam17380 405 KILEEERQRKIQQQKVEMEQIRAEQEE-------ARQREVRRLEEE----------RAREMERVRLEEQERQQQVERLRQ 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1457 ELEKNKKihytlnmtkRKYEKEKDELSKQN-QSLAKQLEEAKEEAGKRTTTDAVVEQSVKEREEKEKRIQILDKYVHQLK 1535
Cdd:pfam17380 468 QEEERKR---------KKLELEKEKRDRKRaEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREA 538
|
330 340 350
....*....|....*....|....*....|....*.
gi 334184013 1536 DEVRKKTEDLKKKDE------ELTKERSERKSVEKE 1565
Cdd:pfam17380 539 EEERRKQQEMEERRRiqeqmrKATEERSRLEAMERE 574
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1272-1582 |
1.65e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.56 E-value: 1.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1272 ERASTRASLLT-DDGIKSLQLQVSEMNLLRE-SNMQLREENKHNFEKCQEMREVAQKARMESENFENLLKTKQTELDLCM 1349
Cdd:pfam05483 177 EREETRQVYMDlNNNIEKMILAFEELRVQAEnARLEMHFKLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKM 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1350 KEMEKLRMETdlhKKRVDELRETyrnidiadyNRLKDE-VRQLEEKLKAKDAHAEDCKKVLLEKQNKISLLEKELTNCKK 1428
Cdd:pfam05483 257 KDLTFLLEES---RDKANQLEEK---------TKLQDEnLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATK 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1429 DL----SEREKRLDDAQQAQA--------------TMQSEFNKQKQELEKNKKIHYTLNMTKRKYEKEKDELSKQNQSLA 1490
Cdd:pfam05483 325 TIcqltEEKEAQMEELNKAKAahsfvvtefeattcSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKE 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1491 KQLEEAKEEAGKRtttdavvEQSVKEREEKEKRIQILDKYVHQLKDEVRKKTEDLKKKDEELTKERSERKSVEKEVGDSL 1570
Cdd:pfam05483 405 VELEELKKILAED-------EKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLK 477
|
330
....*....|..
gi 334184013 1571 TKIKKEKTKVDE 1582
Cdd:pfam05483 478 TELEKEKLKNIE 489
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1015-1263 |
1.70e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 1.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1015 RLEA-EKRQRSLEAELVSLRERVSELENDCIQKSEQLATAAAGKEDA-----LLSASAEIASLREEnlvkKSQIEAMNIQ 1088
Cdd:COG4913 611 KLAAlEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSwdeidVASAEREIAELEAE----LERLDASSDD 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1089 MSTLKndletehEKWRVAQRNYERQVILLSETIQELTKTSQALAALQEEASELRKLADARGIENSELNAKWSEEKLMLEQ 1168
Cdd:COG4913 687 LAALE-------EQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAAL 759
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1169 QKNLAEKKYHELNEQNKLLHSRLE----------AKHLNSAEKNSRSGTISSGSTDS-----DHLEDSGLqrvvhyLRRT 1233
Cdd:COG4913 760 GDAVERELRENLEERIDALRARLNraeeeleramRAFNREWPAETADLDADLESLPEylallDRLEEDGL------PEYE 833
|
250 260 270
....*....|....*....|....*....|
gi 334184013 1234 KEIAETEISLMRQEKLRLQSQLESALKMAE 1263
Cdd:COG4913 834 ERFKELLNENSIEFVADLLSKLRRAIREIK 863
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1278-1606 |
1.91e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 43.67 E-value: 1.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1278 ASLLTDDGI--KSLQLQVSEM-NLLRESNMQLR-EENKHNFEKCQEMREVAQKARME-------SENFENLLKTKQTELD 1346
Cdd:pfam12128 203 VAILEDDGVvpPKSRLNRQQVeHWIRDIQAIAGiMKIRPEFTKLQQEFNTLESAELRlshlhfgYKSDETLIASRQEERQ 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1347 LCMKEME-KLRMETDLHKKRVDELRetyrnidiADYNRLKDEVRQLEEKLKAKDAHAEDCKKVLLEKqnkISLLEKELTN 1425
Cdd:pfam12128 283 ETSAELNqLLRTLDDQWKEKRDELN--------GELSAADAAVAKDRSELEALEDQHGAFLDADIET---AAADQEQLPS 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1426 CKKDLSEREKRLDDAQQAQATMQSEFNKQKQELEKNkkihytlnmTKRKYEKEKDELSKQNQSLAKQLEEA-----KEEA 1500
Cdd:pfam12128 352 WQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQ---------NNRDIAGIKDKLAKIREARDRQLAVAeddlqALES 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1501 GKRTTTDAVVEQSVKEREEKEKRIQILDKYVHQLKDEVRKKTeDLKKKDEELTKERSERKSVEKEVGDSLTKIKKEKTKV 1580
Cdd:pfam12128 423 ELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLL-QLENFDERIERAREEQEAANAEVERLQSELRQARKRR 501
|
330 340
....*....|....*....|....*.
gi 334184013 1581 DEELAKLERYQTALTHLSEELEKLKH 1606
Cdd:pfam12128 502 DQASEALRQASRRLEERQSALDELEL 527
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
1306-1578 |
1.95e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 43.38 E-value: 1.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1306 LREENKHNFEKCQEMREVAQKarmeSENFENLLKTKQTeLDLCMKEMEKLRMETDLHKKRVDELRETYRNIDIADYNRLK 1385
Cdd:PRK05771 25 LHELGVVHIEDLKEELSNERL----RKLRSLLTKLSEA-LDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1386 DEVRQLEEKLKAKDAHAEDCK--KVLLEKQNKISL---LEKELTNCKKDLSEREKRLDDAQQaqatmqSEFNKQKQELEK 1460
Cdd:PRK05771 100 KEIKELEEEISELENEIKELEqeIERLEPWGNFDLdlsLLLGFKYVSVFVGTVPEDKLEELK------LESDVENVEYIS 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1461 NKKIHYTLN-MTKRKYEKEKDELSKQNQSLAKQLEEAKeeagkrtttdavveqSVKER-EEKEKRIQILDKYvhqlKDEV 1538
Cdd:PRK05771 174 TDKGYVYVVvVVLKELSDEVEEELKKLGFERLELEEEG---------------TPSELiREIKEELEEIEKE----RESL 234
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 334184013 1539 RKKTEDLKKKDEELTKERSERKSVEKEVGDSLTKIKKEKT 1578
Cdd:PRK05771 235 LEELKELAKKYLEELLALYEYLEIELERAEALSKFLKTDK 274
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
78-362 |
2.00e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 43.38 E-value: 2.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 78 LQSDFDDRLAELAQSQAqkhqLHLQSIEKDGEVERmstemselhksKRQLMELLEqkdaEISEKNSTIKSYLDKIVKLTD 157
Cdd:PRK05771 14 LKSYKDEVLEALHELGV----VHIEDLKEELSNER-----------LRKLRSLLT----KLSEALDKLRSYLPKLNPLRE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 158 TSSEKEARLAEATAElarsqamcsrlSQEKELTErhakwLDEELTAKVDSYAELRRRHSDLESEMSAklvdveknyIECS 237
Cdd:PRK05771 75 EKKKVSVKSLEELIK-----------DVEEELEK-----IEKEIKELEEEISELENEIKELEQEIER---------LEPW 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 238 SSLNWHKERLRELET---KIGSLQEDLSSCKDAATTTEEQYTAE------LFTANKLVDLYKESSEE-----WSRKAGEL 303
Cdd:PRK05771 130 GNFDLDLSLLLGFKYvsvFVGTVPEDKLEELKLESDVENVEYIStdkgyvYVVVVVLKELSDEVEEElkklgFERLELEE 209
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 334184013 304 EG----VIKALEARLSQVEsSYKERLDKEVstKQLLEKENGDLKQKLEKCEAEIEK------TRKTDEL 362
Cdd:PRK05771 210 EGtpseLIREIKEELEEIE-KERESLLEEL--KELAKKYLEELLALYEYLEIELERaealskFLKTDKT 275
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
677-1153 |
2.32e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.11 E-value: 2.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 677 LEDSEEATKRAQEKAfERIRILEEDFAKARSEVIAIRSERDKLAMEANFAREKLEGImkeserkREEMNSVLARnIEFSQ 756
Cdd:PRK02224 236 RDEADEVLEEHEERR-EELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEEL-------EEERDDLLAE-AGLDD 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 757 LIIDhqrKLRESSESLHAAEEISRKLSMEVSVLKQEKEllSNAEkRASDEVSALSQRVYRLQATLDTVQSTEEVREETRA 836
Cdd:PRK02224 307 ADAE---AVEARREELEDRDEELRDRLEECRVAAQAHN--EEAE-SLREDADDLEERAEELREEAAELESELEEAREAVE 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 837 AERRKQEEHIKQLqREWAEAKKELQEERSNARDFTSDRNQTLNNAVMQVEEMGKELANALKAvsVAESRASVAEARLSDL 916
Cdd:PRK02224 381 DRREEIEELEEEI-EELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARER--VEEAEALLEAGKCPEC 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 917 EKKIR-SSDPKTLDMDSGGIVSLSDKEAALVIILDVVHKiqagfRIGSAMsiELRTAKEEIEKLRGEVESSKSHMLQYKS 995
Cdd:PRK02224 458 GQPVEgSPHVETIEEDRERVEELEAELEDLEEEVEEVEE-----RLERAE--DLVEAEDRIERLEERREDLEELIAERRE 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 996 IAQVNETALKQMESAHENFRLEA-EKRQRSLEAELVS--LRERVSELE------NDCIQKSEQLATAAAGKEDallsASA 1066
Cdd:PRK02224 531 TIEEKRERAEELRERAAELEAEAeEKREAAAEAEEEAeeAREEVAELNsklaelKERIESLERIRTLLAAIAD----AED 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1067 EIASLREenlvKKSQIEAMNIQ-------MSTLKNDLETEHEKWRVAQRNYERQvillsETIQELTKTSQALAALQEEAS 1139
Cdd:PRK02224 607 EIERLRE----KREALAELNDErrerlaeKRERKRELEAEFDEARIEEAREDKE-----RAEEYLEQVEEKLDELREERD 677
|
490
....*....|....
gi 334184013 1140 ELRKlaDARGIENS 1153
Cdd:PRK02224 678 DLQA--EIGAVENE 689
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1321-1604 |
2.54e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.11 E-value: 2.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1321 REVAQKARMESENFENLLKTKQTELDLCM--KEMEKLRMETDLHK-KRVDELRETYRNIDIAdYNRLKDEVRQLEEKLKA 1397
Cdd:PRK02224 116 EEVTELLRMDAEAFVNCAYVRQGEVNKLInaTPSDRQDMIDDLLQlGKLEEYRERASDARLG-VERVLSDQRGSLDQLKA 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1398 KDAHAEDckKVLLEKQNKislLEKELTNCKKDLSEREKRLDDAQQAQATMQS---EFNKQKQELEKNKKIHYTLNMTKRK 1474
Cdd:PRK02224 195 QIEEKEE--KDLHERLNG---LESELAELDEEIERYEEQREQARETRDEADEvleEHEERREELETLEAEIEDLRETIAE 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1475 YEKEKDELSKQNQSLAKQLEEAKEE-----------AGKRTTTDAVVEQSVKEREEKEKRIQILDKYVHQLKDEVRKKTE 1543
Cdd:PRK02224 270 TEREREELAEEVRDLRERLEELEEErddllaeagldDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLRE 349
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 334184013 1544 DLKKKDEELTKERSERKSVEKEVGDSLTKIKKEKTKVDEELAKLERYQTALTHLSEELEKL 1604
Cdd:PRK02224 350 DADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNA 410
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
677-866 |
2.85e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 2.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 677 LEDSEEA--TKRAQEKAFERIRILEEDFAKARSEVIAIRSERDKLAMEanFAREKLEGIMKESERKREEMNSVLARNIEF 754
Cdd:COG4913 237 LERAHEAleDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLW--FAQRRLELLEAELEELRAELARLEAELERL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 755 SQLIIDHQRKLRESSESLHAA--EEISRkLSMEVSVLKQEKELLSNAEKRASDEVSALSQRV-------YRLQATLDTVQ 825
Cdd:COG4913 315 EARLDALREELDELEAQIRGNggDRLEQ-LEREIERLERELEERERRRARLEALLAALGLPLpasaeefAALRAEAAALL 393
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 334184013 826 STEEVREETRAAERRKQEEHIKQLQREWAEAKKELQEERSN 866
Cdd:COG4913 394 EALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERR 434
|
|
| PRK11637 |
PRK11637 |
AmiB activator; Provisional |
1422-1603 |
3.03e-03 |
|
AmiB activator; Provisional
Pssm-ID: 236942 [Multi-domain] Cd Length: 428 Bit Score: 42.37 E-value: 3.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1422 ELTNCKKDLSEREKRLDDAQQAQATMQSEFNKQKQEL-EKNKKIHYTLNmTKRKYEKEKDELS-----------KQNQSL 1489
Cdd:PRK11637 48 QLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAIsQASRKLRETQN-TLNQLNKQIDELNasiakleqqqaAQERLL 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1490 AKQLEEAKEEaGKRTTTDAVVEQSVKEREEkekRIQILDKYVHQlkdeVRKKT-EDLKKKDEELTKERSERKSVEKEVGD 1568
Cdd:PRK11637 127 AAQLDAAFRQ-GEHTGLQLILSGEESQRGE---RILAYFGYLNQ----ARQETiAELKQTREELAAQKAELEEKQSQQKT 198
|
170 180 190
....*....|....*....|....*....|....*
gi 334184013 1569 SLTKIKKEKTKVdeELAKLERYQTaLTHLSEELEK 1603
Cdd:PRK11637 199 LLYEQQAQQQKL--EQARNERKKT-LTGLESSLQK 230
|
|
| MutS2 |
COG1193 |
dsDNA-specific endonuclease/ATPase MutS2 [Replication, recombination and repair]; |
777-927 |
3.17e-03 |
|
dsDNA-specific endonuclease/ATPase MutS2 [Replication, recombination and repair];
Pssm-ID: 440806 [Multi-domain] Cd Length: 784 Bit Score: 42.82 E-value: 3.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 777 EISRKLSMEVSVLKQEKELLSNAEKRASDEVSALSQRVYRLQATLDTVQSTEEVREETRAAERRKQEEHIKQLQREWAEA 856
Cdd:COG1193 490 EIARRLGLPEEIIERARELLGEESIDVEKLIEELERERRELEEEREEAERLREELEKLREELEEKLEELEEEKEEILEKA 569
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 334184013 857 KKELQEERSNARDftsdrnqtlnnavmQVEEMGKElanaLKAVSVAESRASVAEARLSDLEKKIRSSDPKT 927
Cdd:COG1193 570 REEAEEILREARK--------------EAEELIRE----LREAQAEEEELKEARKKLEELKQELEEKLEKP 622
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1018-1604 |
3.57e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.33 E-value: 3.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1018 AEKRQRSLEAELVSLRERVSELENDCIQKSEQLATAAAGKEDAllsasAEIASLREENLVKKSQIEAMNIQMSTLKNDLE 1097
Cdd:PRK02224 197 EEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEA-----DEVLEEHEERREELETLEAEIEDLRETIAETE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1098 TEHEKWRVAQRNYERQVILLSETIQELTKTSqALAALQEEASELRKlaDARGIENSELNAKWSEEKLMLEQQKNLAE--- 1174
Cdd:PRK02224 272 REREELAEEVRDLRERLEELEEERDDLLAEA-GLDDADAEAVEARR--EELEDRDEELRDRLEECRVAAQAHNEEAEslr 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1175 KKYHELNEQNKLLHSrlEAKHLNSAEKNSRSgTISSGSTDSDHLEDSglqrvVHYLRRTKEIAETEISlmrqeklrlqsQ 1254
Cdd:PRK02224 349 EDADDLEERAEELRE--EAAELESELEEARE-AVEDRREEIEELEEE-----IEELRERFGDAPVDLG-----------N 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1255 LESALKMAESARGSLTAERASTRASLLTDDGIkslqlqvsemnllRESNMQLREENKhnfekCQEM-REVAQKARMESen 1333
Cdd:PRK02224 410 AEDFLEELREERDELREREAELEATLRTARER-------------VEEAEALLEAGK-----CPECgQPVEGSPHVET-- 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1334 fenlLKTKQTELDLCMKEMEKLRMETDLHKKRVD---ELRETYRNIDiadynRLKDEVRQLEEKLKAKDAHAEDCKKVLL 1410
Cdd:PRK02224 470 ----IEEDRERVEELEAELEDLEEEVEEVEERLEraeDLVEAEDRIE-----RLEERREDLEELIAERRETIEEKRERAE 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1411 EKQNKISLLEKELTNCKKDLSEREKRLDDAQQAQATMQSEFNKQKQELEKNKKIHyTLNMTKRKYEKEKDELSKQNQSLA 1490
Cdd:PRK02224 541 ELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIR-TLLAAIADAEDEIERLREKREALA 619
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1491 KQLEEAKEEAGKRTTTDAVVEQSVKEREekekriqildkyVHQLKDEVRKKTEDLKKKDEELTKERSERKSVEKEVGDSL 1570
Cdd:PRK02224 620 ELNDERRERLAEKRERKRELEAEFDEAR------------IEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVE 687
|
570 580 590
....*....|....*....|....*....|....
gi 334184013 1571 TKIkKEKTKVDEELAKLERYQTALTHLSEELEKL 1604
Cdd:PRK02224 688 NEL-EELEELRERREALENRVEALEALYDEAEEL 720
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
800-1147 |
3.60e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.33 E-value: 3.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 800 EKRASDEVSALSQRVYRLQATLDTVQSTEEVREETRAA---------ERRKQEEHIKQLQREWAEAKKELQEERSNARDF 870
Cdd:PRK02224 201 EKDLHERLNGLESELAELDEEIERYEEQREQARETRDEadevleeheERREELETLEAEIEDLRETIAETEREREELAEE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 871 TSDRNQtlnnavmQVEEMGKELANALKAVSVAESRASVAEARLSDLEKKIRSSDPKTLDMDSGGIVSLSDKEAALVIILD 950
Cdd:PRK02224 281 VRDLRE-------RLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADD 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 951 VVHKIQAGFRIGSAMSIELRTAKEEIEKLRGEVESSKSHMlqyksiaqvnETALKQMESAHENFRlEAEKRQRSLEAELV 1030
Cdd:PRK02224 354 LEERAEELREEAAELESELEEAREAVEDRREEIEELEEEI----------EELRERFGDAPVDLG-NAEDFLEELREERD 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1031 SLRERVSELENDCIQKSEQLATA----AAGK-------------EDALLSASAEIASLREENLVKKSQIEAMNIQMSTLK 1093
Cdd:PRK02224 423 ELREREAELEATLRTARERVEEAeallEAGKcpecgqpvegsphVETIEEDRERVEELEAELEDLEEEVEEVEERLERAE 502
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 334184013 1094 NDLETEHEKWRVAQRNyERQVILLSETIQELTKTSQALAALQEEASELRKLADA 1147
Cdd:PRK02224 503 DLVEAEDRIERLEERR-EDLEELIAERRETIEEKRERAEELRERAAELEAEAEE 555
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1315-1499 |
3.89e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 3.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1315 EKCQEMREVAQKARMESENFENLLKTKQTELDLCMKEMEKLRMETDL--HKKRVDELRETYRNIDIADynrlkDEVRQLE 1392
Cdd:COG4913 617 AELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVasAEREIAELEAELERLDASS-----DDLAALE 691
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1393 EKLKAKDAHAEDCKKVLLEKQNKISLLEKELTNCKKDLSEREKRLDDAQQ-AQATMQSEFNKQKQELEKNKKIHYTLNMT 1471
Cdd:COG4913 692 EQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDlARLELRALLEERFAAALGDAVERELRENL 771
|
170 180
....*....|....*....|....*...
gi 334184013 1472 KRKYEKEKDELSKQNQSLAKQLEEAKEE 1499
Cdd:COG4913 772 EERIDALRARLNRAEEELERAMRAFNRE 799
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
1427-1580 |
3.95e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.51 E-value: 3.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1427 KKDLSEREKRLDDAQQAqatmqSEFNKQKQElEKNKKIHYTLNMTKRKYEKEKDELSKQNQSLAKQLEEAKEEAGKRttt 1506
Cdd:PRK00409 508 KKLIGEDKEKLNELIAS-----LEELERELE-QKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQA--- 578
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 334184013 1507 davVEQSVKEREEKEKRIQILDKyvHQLKDEVRKKTEDLKKKDEELTKERSERKSVEKEVGDSLT-----KIKKEKTKV 1580
Cdd:PRK00409 579 ---IKEAKKEADEIIKELRQLQK--GGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELKvgdevKYLSLGQKG 652
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
84-925 |
3.98e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.36 E-value: 3.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 84 DRLAELAQSQAQKHQlhlqSIEKDGEVERMSTEMSELHKSKRQLMELLeQKDAEISEKNSTIKSYLDKIvKLTDTSSEKE 163
Cdd:TIGR02169 160 DEIAGVAEFDRKKEK----ALEELEEVEENIERLDLIIDEKRQQLERL-RREREKAERYQALLKEKREY-EGYELLKEKE 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 164 ARLAEATAELARSQamcsrlSQEKELTErhakwLDEELTAKVDSYAELRRRHSDLESEMSAKlvdveknyiecssslnwH 243
Cdd:TIGR02169 234 ALERQKEAIERQLA------SLEEELEK-----LTEEISELEKRLEEIEQLLEELNKKIKDL-----------------G 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 244 KERLRELETKIGSLQEDLSSCKDAatttEEQYTAELFTANKLVDLYKESSEEWSRKAGELEGVIKALEARLSQVESSYKE 323
Cdd:TIGR02169 286 EEEQLRVKEKIGELEAEIASLERS----IAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAE 361
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 324 R---LDKEVSTKQLLEKENGDLKQKLEKCEAEIEK-TRKTDELNLIPFSNFTRRVDNSGT-SNMIEESQAVISKVPAGVS 398
Cdd:TIGR02169 362 LkeeLEDLRAELEEVDKEFAETRDELKDYREKLEKlKREINELKRELDRLQEELQRLSEElADLNAAIAGIEAKINELEE 441
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 399 G-TALAASLLRDGW---SLAKIYEKYQEAVDAMRHEQLGRKEAEMILQRVLSELEEKAGFIQEERGEYERVVEAYCLVNQ 474
Cdd:TIGR02169 442 EkEDKALEIKKQEWkleQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQ 521
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 475 KLQDSVSEQSNM-EKFIMELKADLrrRERENTLLQKDISDLQKQVTIL------------LKECRDVQLRCGAARDDDED 541
Cdd:TIGR02169 522 GVHGTVAQLGSVgERYATAIEVAA--GNRLNNVVVEDDAVAKEAIELLkrrkagratflpLNKMRDERRDLSILSEDGVI 599
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 542 DYPL-LSDVEMEMESEADKIISEHLLkFKDINGLVEQNVKLRnLVRSLSEQIE--------SRETELKETFEVDLKNKTD 612
Cdd:TIGR02169 600 GFAVdLVEFDPKYEPAFKYVFGDTLV-VEDIEAARRLMGKYR-MVTLEGELFEksgamtggSRAPRGGILFSRSEPAELQ 677
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 613 EASAKVATVLKRAEEQGQMIESLHTSVAMYKRLYEEEQKLHSSdsrssdlspavvpgRKNFLHLLEDSEEATKRAQEKAF 692
Cdd:TIGR02169 678 RLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGE--------------IEKEIEQLEQEEEKLKERLEELE 743
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 693 ERIRILEEDFAKARSEVIAIRSERDKLAMEANFAREKLEGI-----MKESERKREEMNSVLARNIEFSQLIIDHQRKLre 767
Cdd:TIGR02169 744 EDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLearlsHSRIPEIQAELSKLEEEVSRIEARLREIEQKL-- 821
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 768 ssESLHAAEEISRKLSMEvsvLKQEKELLSNAEKRASDEVSALSQRVYRLQATLDTVQSTEEVREETRAAERRKQEEHIK 847
Cdd:TIGR02169 822 --NRLTLEKEYLEKEIQE---LQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEA 896
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 334184013 848 QLqREWAEAKKELQEERSNARDFTSDRNQTLNNAVMQVEEMGKELAnALKAVSVAESRASVAEARLSDLEKKIRSSDP 925
Cdd:TIGR02169 897 QL-RELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKG-EDEEIPEEELSLEDVQAELQRVEEEIRALEP 972
|
|
| PRK12495 |
PRK12495 |
hypothetical protein; Provisional |
1957-2046 |
4.05e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 183558 [Multi-domain] Cd Length: 226 Bit Score: 41.01 E-value: 4.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1957 AMEEAETTIETPVEDDKTDEGGDAAEEAADIPNNANDQQEAPETdikPETSAATTSPVSTAPTTSSTLASAITSSGAPET 2036
Cdd:PRK12495 74 AGDDAGDGAEATAPSDAGSQASPDDDAQPAAEAEAADQSAPPEA---SSTSATDEAATDPPATAAARDGPTPDPTAQPAT 150
|
90
....*....|
gi 334184013 2037 EDPKRAPSPG 2046
Cdd:PRK12495 151 PDERRSPRQR 160
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
973-1144 |
4.22e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.31 E-value: 4.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 973 KEEIEKLRGEVESSKSHMLQYKsiAQVNETALKQMESAHENFRLEAEKRQRSLEAELVSLRERVSELENDCIQKSEQLAT 1052
Cdd:COG3206 181 EEQLPELRKELEEAEAALEEFR--QKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1053 AAA-----GKEDALLSASAEIASLREENLVKKSQIEAMNIQMSTLKNDLETEHEK-WRVAQRNYERQVILLSETIQELTK 1126
Cdd:COG3206 259 LLQspviqQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRiLASLEAELEALQAREASLQAQLAQ 338
|
170
....*....|....*...
gi 334184013 1127 TSQALAALQEEASELRKL 1144
Cdd:COG3206 339 LEARLAELPELEAELRRL 356
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
679-928 |
4.69e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 4.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 679 DSEEATKRAQEKAFERIRILEEDFAKARSEVIAIRSERDKLAMEANFAREKLEGIMKESERKREEMNSvLARNIEFSQLI 758
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAE-LEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 759 IDHQRKlrESSESLHAAEEISRKLSMEVsvlkqekeLLSnaekraSDEVSALSQRVYRLQATLDTVQSTEEVREETRAAE 838
Cdd:COG4942 99 LEAQKE--ELAELLRALYRLGRQPPLAL--------LLS------PEDFLDAVRRLQYLKYLAPARREQAEELRADLAEL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 839 RRKQEEhIKQLQREWAEAKKELQEERSNARDFTSDRNQTLNNAVMQVEEMGKELANALKAVSVAESRASVAEARLSDLEK 918
Cdd:COG4942 163 AALRAE-LEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
250
....*....|
gi 334184013 919 KIRSSDPKTL 928
Cdd:COG4942 242 RTPAAGFAAL 251
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
1392-1605 |
5.42e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.84 E-value: 5.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1392 EEKLKAKDAHAEDCKKVLLEKQNKIsllEKELtnckKDLSEREKRLDDaqqaqatMQSEFNKQKQELEKNK------KIH 1465
Cdd:PRK05771 74 EEKKKVSVKSLEELIKDVEEELEKI---EKEI----KELEEEISELEN-------EIKELEQEIERLEPWGnfdldlSLL 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1466 YTLNMTKRKY---EKEKDELSKQNQSLaKQLEEAKEEAGKRTttdAVVeqsVKEREEKEKRIQILDKYvhqlkDEVRKKT 1542
Cdd:PRK05771 140 LGFKYVSVFVgtvPEDKLEELKLESDV-ENVEYISTDKGYVY---VVV---VVLKELSDEVEEELKKL-----GFERLEL 207
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 334184013 1543 EDLKKKDEELTKERSERKSVEKEVGDSLTKIKKEKTKVDEELAKLERYqtalthLSEELEKLK 1605
Cdd:PRK05771 208 EEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEY------LEIELERAE 264
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
150-324 |
5.59e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 5.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 150 DKIVKLTDTSSEKEARLAEATAELARSQAMCSRLSQEKELTERHAK--WLDEELTAKVDSYAELRRRHSDLESEMS---- 223
Cdd:COG4913 610 AKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEysWDEIDVASAEREIAELEAELERLDASSDdlaa 689
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 224 ---------AKLVDVEKNYIECSSSLNWHKERLRELETKIGSLQEDLSSCKDAATTTEEQYTAELFTANKLVDLYKESSE 294
Cdd:COG4913 690 leeqleeleAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRE 769
|
170 180 190
....*....|....*....|....*....|
gi 334184013 295 EWSRKAGELEGVIKALEARLSQVESSYKER 324
Cdd:COG4913 770 NLEERIDALRARLNRAEEELERAMRAFNRE 799
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
131-359 |
6.23e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.56 E-value: 6.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 131 LEQKDAEISEKNSTIKSYLDKIVKLTDTSSEKEARLAEATAELARSQAMCSRLSQEKELTERHAKWLDEELtakvdsyAE 210
Cdd:PRK02224 211 LESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEV-------RD 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 211 LRRRHSDLESEMSAKLVDVEKNYIECSSSLnwhkERLRELETKIGSLQEDLSSCKDAATTTEEQYTAELFTANKLVDLYK 290
Cdd:PRK02224 284 LRERLEELEEERDDLLAEAGLDDADAEAVE----ARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 291 ESSEEWSRKAGELEGVIKALEARLSQVESSYKE-------------RLDKEVSTKQLLEKENGDLKQKLEKCEAEIEKTR 357
Cdd:PRK02224 360 ELREEAAELESELEEAREAVEDRREEIEELEEEieelrerfgdapvDLGNAEDFLEELREERDELREREAELEATLRTAR 439
|
..
gi 334184013 358 KT 359
Cdd:PRK02224 440 ER 441
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
210-355 |
6.44e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.61 E-value: 6.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 210 ELRRRHSDLESEMSAKLVDVEKNyiecssslnwHKERLRELETKIGSLQEDLSSCKdaattteEQYTAELFTANKLVDLy 289
Cdd:COG0542 415 ELERRLEQLEIEKEALKKEQDEA----------SFERLAELRDELAELEEELEALK-------ARWEAEKELIEEIQEL- 476
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 334184013 290 KESSEEWSRKAGELEGVIKALEARLSQVESSYKERLDKE-----VS------TKQLLEKEngdlKQKLEKCEAEIEK 355
Cdd:COG0542 477 KEELEQRYGKIPELEKELAELEEELAELAPLLREEVTEEdiaevVSrwtgipVGKLLEGE----REKLLNLEEELHE 549
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
685-1263 |
8.05e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 41.26 E-value: 8.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 685 KRAQEKAFERIRILEEDFAKARSEVIAIRSERDKLAMEANFAREKLEGIMKESERKREEMNSVLARNIEF------SQLI 758
Cdd:pfam15921 334 REAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLwdrdtgNSIT 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 759 IDHQRKlresseslhaaeeisrklsmevsvlkqekellsnaekrasdEVSALSQRVYRLQATLDTVQSTEEVREETRAAE 838
Cdd:pfam15921 414 IDHLRR-----------------------------------------ELDDRNMEVQRLEALLKAMKSECQGQMERQMAA 452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 839 RRKQEEHIKQLQREWAEAKKELQEERSNARDFTSdRNQTLNNAVMQVEEMGKELANALKAVSVAESRASvaearlsdlek 918
Cdd:pfam15921 453 IQGKNESLEKVSSLTAQLESTKEMLRKVVEELTA-KKMTLESSERTVSDLTASLQEKERAIEATNAEIT----------- 520
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 919 KIRSSdpktLDMDSGGIVSLSDKEaalviilDVVHKIQAGFrigSAMSIELRTAKEEIEKLRGEVESSKSHMLQYKSIAQ 998
Cdd:pfam15921 521 KLRSR----VDLKLQELQHLKNEG-------DHLRNVQTEC---EALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAG 586
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 999 VNETALKQMESAHENFRLEAEK---RQRSLEAELVSLRERVSELEndciqkSEQLATAAAGKEdallsasaeiaSLREEN 1075
Cdd:pfam15921 587 AMQVEKAQLEKEINDRRLELQEfkiLKDKKDAKIRELEARVSDLE------LEKVKLVNAGSE-----------RLRAVK 649
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1076 LVKKSQIEAMNiQMSTLKNDLETEHEKWRVAQRNYERQVILLSETIQEL-TKTSQALAALQEEASELRKLADARG----- 1149
Cdd:pfam15921 650 DIKQERDQLLN-EVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLkMQLKSAQSELEQTRNTLKSMEGSDGhamkv 728
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1150 ---------IENSELNAKWSEEKLMLEQQKNlAEKKYHELNEQNKLLHSRLEAKhlnSAEKNSRSGTISSGSTDSDHLED 1220
Cdd:pfam15921 729 amgmqkqitAKRGQIDALQSKIQFLEEAMTN-ANKEKHFLKEEKNKLSQELSTV---ATEKNKMAGELEVLRSQERRLKE 804
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 334184013 1221 SGLQRVVHYLRRTKEIAETEISLMRQEKLRLQSQLESALKMAE 1263
Cdd:pfam15921 805 KVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDVKE 847
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
31-358 |
8.90e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.20 E-value: 8.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 31 KIYAELDSVRAKADAASITAEQTCSLLEQKYLSLSQDFSSLESQNAKLQ------SDFDDRLAELAQSqaqkHQLHLQSI 104
Cdd:PRK03918 293 EEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEelkkklKELEKRLEELEER----HELYEEAK 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 105 EKDGEVERMSTEMSELHKSK-RQLMELLEQKDAEISEKNSTIKSYLDKIVKltdtsseKEARLAEATAELARSQAMCSRL 183
Cdd:PRK03918 369 AKKEELERLKKRLTGLTPEKlEKELEELEKAKEEIEEEISKITARIGELKK-------EIKELKKAIEELKKAKGKCPVC 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 184 SqeKELTERHAKWLDEELTAKVDSYAELRRRHSDLESEMSAKLVDVEKNYIECSSSLNWHK--ERLRELETKIGS----- 256
Cdd:PRK03918 442 G--RELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKElaEQLKELEEKLKKynlee 519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 257 -----------------LQEDLSSCKDAATTTEEqYTAELFTANKLVDLYKESSEEWSRKAGELE-GVIKALEARLSQVE 318
Cdd:PRK03918 520 lekkaeeyeklkeklikLKGEIKSLKKELEKLEE-LKKKLAELEKKLDELEEELAELLKELEELGfESVEELEERLKELE 598
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 334184013 319 SSYKE--RLDKEVSTKQLLEKENGDLKQKLEKCEAEIEKTRK 358
Cdd:PRK03918 599 PFYNEylELKDAEKELEREEKELKKLEEELDKAFEELAETEK 640
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
1350-1594 |
9.10e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 40.28 E-value: 9.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1350 KEMEKLRMETDLHKKRVDELRETYRNidiadynrLKDEVRQLEEKLKAKDAHAEDCKKVLLEKQNKISLLEKELTNCKKD 1429
Cdd:COG1340 15 EKIEELREEIEELKEKRDELNEELKE--------LAEKRDELNAQVKELREEAQELREKRDELNEKVKELKEERDELNEK 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1430 LSEREKRLDDAQQAQATMQS---EFNKQKQELEKNKKIHYTLNMTKrkyEKEKdELSKQNQSLAKQLEEAKEEAGKRTTT 1506
Cdd:COG1340 87 LNELREELDELRKELAELNKaggSIDKLRKEIERLEWRQQTEVLSP---EEEK-ELVEKIKELEKELEKAKKALEKNEKL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1507 DAVVEQSVKEREEKEKRIQILDKYV------HQLKDEVRKKTEDLKKKDEELTKERSERKSVEKEVGDSLTKIKKEKTKV 1580
Cdd:COG1340 163 KELRAELKELRKEAEEIHKKIKELAeeaqelHEEMIELYKEADELRKEADELHKEIVEAQEKADELHEEIIELQKELREL 242
|
250
....*....|....
gi 334184013 1581 DEELAKLERYQTAL 1594
Cdd:COG1340 243 RKELKKLRKKQRAL 256
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
244-603 |
9.18e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.21 E-value: 9.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 244 KERLRELETKIGSLQEDLSSCKDaattteeqytaELFTANKLVDLYKESSEEWSRKAGELEGVIKALEARLSQVessyKE 323
Cdd:TIGR02169 673 PAELQRLRERLEGLKRELSSLQS-----------ELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKL----KE 737
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 324 RLDKEVSTKQLLEKENGDLKQKLEKCEAEIEKTRKT-----DELNLIPFSNFTRRVDNSGtsNMIEESQAVISKVPAGVS 398
Cdd:TIGR02169 738 RLEELEEDLSSLEQEIENVKSELKELEARIEELEEDlhkleEALNDLEARLSHSRIPEIQ--AELSKLEEEVSRIEARLR 815
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 399 gtALAASLLRDGWSLAKIYEKYQEAVDAMRHEQLGRKEAEMILQRVLSELEEKAGFIQEERGEYERVVEAYCLVNQKLQD 478
Cdd:TIGR02169 816 --EIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDE 893
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 479 SVSEQSNMEKFIMELKADLRRRERENTLLQKDISDLQKQVTILLKECRDVQlRCGAARDDDEDDYPLLSDVEMEMESEAD 558
Cdd:TIGR02169 894 LEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDE-EIPEEELSLEDVQAELQRVEEEIRALEP 972
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 334184013 559 ---KIISEHLLKFKDINGLVEQNVKLRNLVRSLSEQIESRETELKETF 603
Cdd:TIGR02169 973 vnmLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREVF 1020
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1012-1607 |
9.56e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 41.31 E-value: 9.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1012 ENFRLEAEKRQRSLEAELVSLRERVSELEndciQKSEQLATAAAGKEDALLSASAEIASLREENLVKKSQIEAMNIQMST 1091
Cdd:pfam01576 200 EKGRQELEKAKRKLEGESTDLQEQIAELQ----AQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1092 LKNDLETEhekwRVAQRNYERQVILLSETIQ----ELTKTSQALAALQEeaselrkLADARGIENSELNAKWSEEKLMLE 1167
Cdd:pfam01576 276 LQEDLESE----RAARNKAEKQRRDLGEELEalktELEDTLDTTAAQQE-------LRSKREQEVTELKKALEEETRSHE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1168 QQKNLAEKKY----HELNEQ---NKLLHSRLE-AKHLNSAEKNSRSG---TISSGSTDSDHLEDSGLQRVVHYLRRTKEi 1236
Cdd:pfam01576 345 AQLQEMRQKHtqalEELTEQleqAKRNKANLEkAKQALESENAELQAelrTLQQAKQDSEHKRKKLEGQLQELQARLSE- 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1237 AETEISLMRQEKLRLQSQLESALKMAESARGS---LTAERAS---------------TRASLLTDDGIKSLQlqvSEMNL 1298
Cdd:pfam01576 424 SERQRAELAEKLSKLQSELESVSSLLNEAEGKnikLSKDVSSlesqlqdtqellqeeTRQKLNLSTRLRQLE---DERNS 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1299 LREsNMQLREENKHNFEK-----CQEMREVAQKARMESENFENLLKTK---QTELDLCMKEMEKLRMETDLHKKRVDELR 1370
Cdd:pfam01576 501 LQE-QLEEEEEAKRNVERqlstlQAQLSDMKKKLEEDAGTLEALEEGKkrlQRELEALTQQLEEKAAAYDKLEKTKNRLQ 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1371 ETYRNIDIaDYNRLKDEVRQLEEKLKAKDahaedckKVLLEKQNKISLLEKELTNCKKDLSEREKR-------LDDAQQA 1443
Cdd:pfam01576 580 QELDDLLV-DLDHQRQLVSNLEKKQKKFD-------QMLAEEKAISARYAEERDRAEAEAREKETRalslaraLEEALEA 651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1444 QATMQSEFNKQKQELEKNKKIHYTLNMTKRKYEKEKDELSKQNQSLAKQLEEAKEEAGkrTTTDAVVEQSVKEREEK--- 1520
Cdd:pfam01576 652 KEELERTNKQLRAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQLEELEDELQ--ATEDAKLRLEVNMQALKaqf 729
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184013 1521 EKRIQILDKYVHQLKDEVRKKTEDLKKKDEELTKERSE----RKSVEKEVGDSLTKIKKEKTKVDEELAKLERYQTALTH 1596
Cdd:pfam01576 730 ERDLQARDEQGEEKRRQLVKQVRELEAELEDERKQRAQavaaKKKLELDLKELEAQIDAANKGREEAVKQLKKLQAQMKD 809
|
650
....*....|.
gi 334184013 1597 LSEELEKLKHA 1607
Cdd:pfam01576 810 LQRELEEARAS 820
|
|
| |
