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Conserved domains on  [gi|334183452|ref|NP_001185273|]
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stress response protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
rne super family cl35953
ribonuclease E; Reviewed
156-295 1.51e-04

ribonuclease E; Reviewed


The actual alignment was detected with superfamily member PRK10811:

Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 43.10  E-value: 1.51e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183452  156 DEEVDDLETASQEKEKKGNRRSQRQGKRsQKQEKDsltkNGENEEVEDPETPSQGKQIKENSRaRRQRKRLEKQGKGSLT 235
Cdd:PRK10811  583 GEETKPQEQPAPKAEAKPERQQDRRKPR-QNNRRD----RNERRDTRDNRTRREGRENREENR-RNRRQAQQQTAETRES 656
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 334183452  236 KHGENEEVDNPETpSQEKQIKGNSSSRRQ-LKRSEKQEK------IPSTKEGENEDASQKS--RKKRRQ 295
Cdd:PRK10811  657 QQAEVTEKARTQD-EQQQAPRRERQRRRNdEKRQAQQEAkalnveEQSVQETEQEERVQQVqpRRKQRQ 724
 
Name Accession Description Interval E-value
rne PRK10811
ribonuclease E; Reviewed
156-295 1.51e-04

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 43.10  E-value: 1.51e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183452  156 DEEVDDLETASQEKEKKGNRRSQRQGKRsQKQEKDsltkNGENEEVEDPETPSQGKQIKENSRaRRQRKRLEKQGKGSLT 235
Cdd:PRK10811  583 GEETKPQEQPAPKAEAKPERQQDRRKPR-QNNRRD----RNERRDTRDNRTRREGRENREENR-RNRRQAQQQTAETRES 656
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 334183452  236 KHGENEEVDNPETpSQEKQIKGNSSSRRQ-LKRSEKQEK------IPSTKEGENEDASQKS--RKKRRQ 295
Cdd:PRK10811  657 QQAEVTEKARTQD-EQQQAPRRERQRRRNdEKRQAQQEAkalnveEQSVQETEQEERVQQVqpRRKQRQ 724
 
Name Accession Description Interval E-value
rne PRK10811
ribonuclease E; Reviewed
156-295 1.51e-04

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 43.10  E-value: 1.51e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183452  156 DEEVDDLETASQEKEKKGNRRSQRQGKRsQKQEKDsltkNGENEEVEDPETPSQGKQIKENSRaRRQRKRLEKQGKGSLT 235
Cdd:PRK10811  583 GEETKPQEQPAPKAEAKPERQQDRRKPR-QNNRRD----RNERRDTRDNRTRREGRENREENR-RNRRQAQQQTAETRES 656
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 334183452  236 KHGENEEVDNPETpSQEKQIKGNSSSRRQ-LKRSEKQEK------IPSTKEGENEDASQKS--RKKRRQ 295
Cdd:PRK10811  657 QQAEVTEKARTQD-EQQQAPRRERQRRRNdEKRQAQQEAkalnveEQSVQETEQEERVQQVqpRRKQRQ 724
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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