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Conserved domains on  [gi|334182296|ref|NP_001184909|]
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hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LIN37 super family cl21152
LIN37; LIN37 is a component of the DREAM (or LINC) complex which represses cell ...
 252-334 4.16e-03

LIN37; LIN37 is a component of the DREAM (or LINC) complex which represses cell cycle-dependent genes in quiescent cells and plays a role in the cell cycle-dependent activation of G2/M genes.


The actual alignment was detected with superfamily member pfam15306:

Pssm-ID: 464632  Cd Length: 156  Bit Score: 37.39  E-value: 4.16e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182296  252 SSLYSLGRSWLKN---GAHV-------------------GIQPQRSGIMKPLPKPLPVDLTTETSVPDDPDEESADEDKE 309
Cdd:pfam15306  30 TPLYPICRAWMANqpsNPPVaeqdtspsppiakreldaeEIRNGELKDVYRLPPPDPSPESRIPPPLPVPNRLDKEDANL 109

                          90       100
                  ....*....|....*....|....*
gi 334182296  310 DEEAVKQLSEKDLLKRHIERAKKVR 334
Cdd:pfam15306 110 DPASETAPTKEDLLAEHMARWKKIR 134
 
Name Accession Description Interval E-value
LIN37 pfam15306
LIN37; LIN37 is a component of the DREAM (or LINC) complex which represses cell ...
 252-334 4.16e-03

LIN37; LIN37 is a component of the DREAM (or LINC) complex which represses cell cycle-dependent genes in quiescent cells and plays a role in the cell cycle-dependent activation of G2/M genes.


Pssm-ID: 464632  Cd Length: 156  Bit Score: 37.39  E-value: 4.16e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182296  252 SSLYSLGRSWLKN---GAHV-------------------GIQPQRSGIMKPLPKPLPVDLTTETSVPDDPDEESADEDKE 309
Cdd:pfam15306  30 TPLYPICRAWMANqpsNPPVaeqdtspsppiakreldaeEIRNGELKDVYRLPPPDPSPESRIPPPLPVPNRLDKEDANL 109

                          90       100
                  ....*....|....*....|....*
gi 334182296  310 DEEAVKQLSEKDLLKRHIERAKKVR 334
Cdd:pfam15306 110 DPASETAPTKEDLLAEHMARWKKIR 134
 
Name Accession Description Interval E-value
LIN37 pfam15306
LIN37; LIN37 is a component of the DREAM (or LINC) complex which represses cell ...
 252-334 4.16e-03

LIN37; LIN37 is a component of the DREAM (or LINC) complex which represses cell cycle-dependent genes in quiescent cells and plays a role in the cell cycle-dependent activation of G2/M genes.


Pssm-ID: 464632  Cd Length: 156  Bit Score: 37.39  E-value: 4.16e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182296  252 SSLYSLGRSWLKN---GAHV-------------------GIQPQRSGIMKPLPKPLPVDLTTETSVPDDPDEESADEDKE 309
Cdd:pfam15306  30 TPLYPICRAWMANqpsNPPVaeqdtspsppiakreldaeEIRNGELKDVYRLPPPDPSPESRIPPPLPVPNRLDKEDANL 109

                          90       100
                  ....*....|....*....|....*
gi 334182296  310 DEEAVKQLSEKDLLKRHIERAKKVR 334
Cdd:pfam15306 110 DPASETAPTKEDLLAEHMARWKKIR 134
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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