NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|302565384|ref|NP_001180635|]
View 

UPF0538 protein C2orf76 homolog [Macaca mulatta]

Protein Classification

AIM29 family protein( domain architecture ID 10562911)

altered inheritance rate of mitochondria protein 29 (AIM29) family protein is a DUF2340 domain-containing protein similar to Saccharomyces cerevisiae AIM29 that may be involved in mitochondrial organization and biogenesis

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF2340 pfam10209
Uncharacterized conserved protein (DUF2340); This is a family of small proteins of ...
 8-126 2.56e-59

Uncharacterized conserved protein (DUF2340); This is a family of small proteins of approximately 150 amino acids of unknown function.


:

Pssm-ID: 462998  Cd Length: 120  Bit Score: 178.48  E-value: 2.56e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302565384    8 ITVRLIRSFEHRNFKPIVYHGVNL-DQTVKEFIIFLKQDVPLRTSLPPpFRNYKYDTLKIIHQAHKSKTNELVLSLEDDD 86
Cdd:pfam10209   1 ITVRVIKSFEYRNVKNLVLHNVDLtTTTVKDLKELVKEEIKTRPGLKP-FRNVKYDTLKIYTKAHGSKTNNLVINLDHDD 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 302565384   87 RLLLKEDS-TLKAAGIASETEIAFFCEEDYKNYKANPISSW 126
Cdd:pfam10209  80 DWILDDDDkTLAELGVENETELSFFNREDYLEFKANPEEKW 120
 
Name Accession Description Interval E-value
DUF2340 pfam10209
Uncharacterized conserved protein (DUF2340); This is a family of small proteins of ...
 8-126 2.56e-59

Uncharacterized conserved protein (DUF2340); This is a family of small proteins of approximately 150 amino acids of unknown function.


Pssm-ID: 462998  Cd Length: 120  Bit Score: 178.48  E-value: 2.56e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302565384    8 ITVRLIRSFEHRNFKPIVYHGVNL-DQTVKEFIIFLKQDVPLRTSLPPpFRNYKYDTLKIIHQAHKSKTNELVLSLEDDD 86
Cdd:pfam10209   1 ITVRVIKSFEYRNVKNLVLHNVDLtTTTVKDLKELVKEEIKTRPGLKP-FRNVKYDTLKIYTKAHGSKTNNLVINLDHDD 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 302565384   87 RLLLKEDS-TLKAAGIASETEIAFFCEEDYKNYKANPISSW 126
Cdd:pfam10209  80 DWILDDDDkTLAELGVENETELSFFNREDYLEFKANPEEKW 120
 
Name Accession Description Interval E-value
DUF2340 pfam10209
Uncharacterized conserved protein (DUF2340); This is a family of small proteins of ...
 8-126 2.56e-59

Uncharacterized conserved protein (DUF2340); This is a family of small proteins of approximately 150 amino acids of unknown function.


Pssm-ID: 462998  Cd Length: 120  Bit Score: 178.48  E-value: 2.56e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302565384    8 ITVRLIRSFEHRNFKPIVYHGVNL-DQTVKEFIIFLKQDVPLRTSLPPpFRNYKYDTLKIIHQAHKSKTNELVLSLEDDD 86
Cdd:pfam10209   1 ITVRVIKSFEYRNVKNLVLHNVDLtTTTVKDLKELVKEEIKTRPGLKP-FRNVKYDTLKIYTKAHGSKTNNLVINLDHDD 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 302565384   87 RLLLKEDS-TLKAAGIASETEIAFFCEEDYKNYKANPISSW 126
Cdd:pfam10209  80 DWILDDDDkTLAELGVENETELSFFNREDYLEFKANPEEKW 120
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH