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Conserved domains on  [gi|300798520|ref|NP_001178817|]
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transmembrane gamma-carboxyglutamic acid protein 1 isoform 2 [Rattus norvegicus]

Protein Classification

coagulation factor( domain architecture ID 10637827)

coagulation factor is a vitamin K-dependent protein S1 family serine peptidase, similar to human coagulation factor X that converts prothrombin to thrombin in the presence of factor Va, calcium and phospholipid during blood clotting

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GLA smart00069
Domain containing Gla (gamma-carboxyglutamate) residues; A hyaluronan-binding domain found in ...
 2-64 4.86e-27

Domain containing Gla (gamma-carboxyglutamate) residues; A hyaluronan-binding domain found in proteins associated with the extracellular matrix, cell adhesion and cell migration.


:

Pssm-ID: 214503  Cd Length: 65  Bit Score: 98.15  E-value: 4.86e-27
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 300798520     2 HVFLTGEKANSVLKRYPRANG-LFEEIRQGNIERECREEVCTYEEAREAFENHEKTKEFWSTYT 64
Cdd:smart00069   2 SVFLSRQEANKVLRRQRRANAfLLEELRPGNLERECQEEICSLEEAREVFEDNEGTDEFYRRYY 65
 
Name Accession Description Interval E-value
GLA smart00069
Domain containing Gla (gamma-carboxyglutamate) residues; A hyaluronan-binding domain found in ...
 2-64 4.86e-27

Domain containing Gla (gamma-carboxyglutamate) residues; A hyaluronan-binding domain found in proteins associated with the extracellular matrix, cell adhesion and cell migration.


Pssm-ID: 214503  Cd Length: 65  Bit Score: 98.15  E-value: 4.86e-27
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 300798520     2 HVFLTGEKANSVLKRYPRANG-LFEEIRQGNIERECREEVCTYEEAREAFENHEKTKEFWSTYT 64
Cdd:smart00069   2 SVFLSRQEANKVLRRQRRANAfLLEELRPGNLERECQEEICSLEEAREVFEDNEGTDEFYRRYY 65
Gla pfam00594
Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domain; This domain is ...
 24-64 1.75e-24

Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domain; This domain is responsible for the high-affinity binding of calcium ions. This domain contains post-translational modifications of many glutamate residues by Vitamin K-dependent carboxylation to form gamma-carboxyglutamate (Gla).


Pssm-ID: 459861  Cd Length: 41  Bit Score: 91.05  E-value: 1.75e-24
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 300798520   24 FEEIRQGNIERECREEVCTYEEAREAFENHEKTKEFWSTYT 64
Cdd:pfam00594   1 LEELKPGNLERECYEEICSYEEAREIFEDDEKTMEFWKKYT 41
 
Name Accession Description Interval E-value
GLA smart00069
Domain containing Gla (gamma-carboxyglutamate) residues; A hyaluronan-binding domain found in ...
 2-64 4.86e-27

Domain containing Gla (gamma-carboxyglutamate) residues; A hyaluronan-binding domain found in proteins associated with the extracellular matrix, cell adhesion and cell migration.


Pssm-ID: 214503  Cd Length: 65  Bit Score: 98.15  E-value: 4.86e-27
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 300798520     2 HVFLTGEKANSVLKRYPRANG-LFEEIRQGNIERECREEVCTYEEAREAFENHEKTKEFWSTYT 64
Cdd:smart00069   2 SVFLSRQEANKVLRRQRRANAfLLEELRPGNLERECQEEICSLEEAREVFEDNEGTDEFYRRYY 65
Gla pfam00594
Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domain; This domain is ...
 24-64 1.75e-24

Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domain; This domain is responsible for the high-affinity binding of calcium ions. This domain contains post-translational modifications of many glutamate residues by Vitamin K-dependent carboxylation to form gamma-carboxyglutamate (Gla).


Pssm-ID: 459861  Cd Length: 41  Bit Score: 91.05  E-value: 1.75e-24
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 300798520   24 FEEIRQGNIERECREEVCTYEEAREAFENHEKTKEFWSTYT 64
Cdd:pfam00594   1 LEELKPGNLERECYEEICSYEEAREIFEDDEKTMEFWKKYT 41
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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