|
Name |
Accession |
Description |
Interval |
E-value |
| PHA03247 super family |
cl33720 |
large tegument protein UL36; Provisional |
205-728 |
9.37e-11 |
|
large tegument protein UL36; Provisional
The actual alignment was detected with superfamily member PHA03247:
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 66.89 E-value: 9.37e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 205 PRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRA------PAHPSQPKPKGLQ 278
Cdd:PHA03247 2575 PRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAAnepdphPPPTVPPPERPRD 2654
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 279 ALRPPQVTPPRKDAAPALGPLSSSPLATPSPsgtkaRPVPPPDNAATPLPATLPPSPPVTPPPPAALQSQAPPTLPATPH 358
Cdd:PHA03247 2655 DPAPGRVSRPRRARRLGRAAQASSPPQRPRR-----RAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAAR 2729
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 359 SSSLTCQLATPLPLAPPSPSAPPSLQTLPSPPAT--PPSQVPPTQlimsfPEAGVSSLATAAFVASVSPSVssplqsmpP 436
Cdd:PHA03247 2730 QASPALPAAPAPPAVPAGPATPGGPARPARPPTTagPPAPAPPAA-----PAAGPPRRLTRPAVASLSESR--------E 2796
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 437 TQANPALPSLPTLLSPLATPPLSAMSPLQGPVSPATSLGNSAFPLAALPQPGLSALTTPPPQASPSPSPPSLQATPHTLA 516
Cdd:PHA03247 2797 SLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPA 2876
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 517 TLPLQDSPLLATLPLQASPSPLTTVSLQDPPLVSPSLLASPplqapphpqappsMTTPPMQAPPSLQTIPPIQvphslTS 596
Cdd:PHA03247 2877 APARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPP-------------QPQPQPPPPPQPQPPPPPP-----PR 2938
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 597 PSLQAPPSPLALSSLQATTSLGSPTLQATHSFLTMSPRqTQASLISPSRPASTPPDSPPLQAPLSLPAS--PPLQTSLSP 674
Cdd:PHA03247 2939 PQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPR-FRVPQPAPSREAPASSTPPLTGHSLSRVSSwaSSLALHEET 3017
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 675 AVSPLSSPLTIHP------LQALSSLASHSPQAPLSSLIMPPLETQSSLAPPSLQTPPAS 728
Cdd:PHA03247 3018 DPPPVSLKQTLWPpddtedSDADSLFDSDSERSDLEALDPLPPEPHDPFAHEPDPATPEA 3077
|
|
| DUF4596 |
pfam15363 |
Domain of unknown function (DUF4596); This domain family is found in eukaryotes, and is ... |
1304-1346 |
6.04e-10 |
|
Domain of unknown function (DUF4596); This domain family is found in eukaryotes, and is approximately 50 amino acids in length. There is a conserved ELET sequence motif. There are two completely conserved residues (S and E) that may be functionally important.
:
Pssm-ID: 464673 Cd Length: 46 Bit Score: 55.70 E-value: 6.04e-10
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 299473771 1304 RWAELLSPLDESRASITsVTSFSPDDVASPQGDWTVVEVETFH 1346
Cdd:pfam15363 5 RWSELSSPLDDSSASIT-VTSFSPEDGCSPQGEWTILELETQH 46
|
|
| PHA03307 super family |
cl33723 |
transcriptional regulator ICP4; Provisional |
57-326 |
5.43e-07 |
|
transcriptional regulator ICP4; Provisional
The actual alignment was detected with superfamily member PHA03307:
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 54.41 E-value: 5.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 57 PLAERAGGIGGATIPESAPRAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGqkgLRI 136
Cdd:PHA03307 100 PAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAA---LPL 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 137 SAEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHS 216
Cdd:PHA03307 177 SSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECP 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 217 TTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPAL 296
Cdd:PHA03307 257 LPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESS 336
|
250 260 270
....*....|....*....|....*....|
gi 299473771 297 GPLSSSPLATPSPSGTKARPVPPPDNAATP 326
Cdd:PHA03307 337 RGAAVSPGPSPSRSPSPSRPPPPADPSSPR 366
|
|
| PHA03247 super family |
cl33720 |
large tegument protein UL36; Provisional |
646-1094 |
4.11e-04 |
|
large tegument protein UL36; Provisional
The actual alignment was detected with superfamily member PHA03247:
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 44.93 E-value: 4.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 646 PASTPPDSPPLQAPLSLPASPPLQTSLSPAVSPLSSP---------LTIHPLQALSSLASHSPQAPLSSLIMPPLETQSS 716
Cdd:PHA03247 2489 PFAAGAAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVgepvhprmlTWIRGLEELASDDAGDPPPPLPPAAPPAAPDRSV 2568
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 717 LAP--------PSLQTPPASLTTPPLENLP------------SLAPPPLQTASAPLTTPPLENLPSLAPPPLQTASAPLT 776
Cdd:PHA03247 2569 PPPrpaprpsePAVTSRARRPDAPPQSARPrapvddrgdprgPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPP 2648
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 777 TPHLETPPCPAPCPLQAPPSPLTTPPPETPSSIATPPPQAPPALASPPLQGLPSPPLSPLATPPPQAPPALALPPLQAPP 856
Cdd:PHA03247 2649 PERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAA 2728
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 857 SPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASP 936
Cdd:PHA03247 2729 RQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPP 2808
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 937 PMSPSATPPPQAPPPLAAPPLQVPPSPPASPPMSPSATPPPRVPPLLAAPPLQVPPSPPASLPMSPLAKPPPQAPPALAT 1016
Cdd:PHA03247 2809 AAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLAR 2888
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 299473771 1017 PPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVP-PSPPASPTlqaPRRPPTPGPDTSVSGPRL 1094
Cdd:PHA03247 2889 PAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPrPQPPLAPT---TDPAGAGEPSGAVPQPWL 2964
|
|
| PRK12323 super family |
cl46901 |
DNA polymerase III subunit gamma/tau; |
1026-1237 |
4.73e-04 |
|
DNA polymerase III subunit gamma/tau;
The actual alignment was detected with superfamily member PRK12323:
Pssm-ID: 481241 [Multi-domain] Cd Length: 700 Bit Score: 44.48 E-value: 4.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 1026 PASFPGQAPFSPSASLPMSplATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPP 1105
Cdd:PRK12323 365 PGQSGGGAGPATAAAAPVA--QPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASAR 442
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 1106 PSRSPSSTLSGPdlaghssSATSTPEELRGYDSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPWPPA 1185
Cdd:PRK12323 443 GPGGAPAPAPAP-------AAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPD 515
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 299473771 1186 TGPGSADGLCTIYETEGPESATPAPGALDPGPSPGTSGGKAAAGAGAGASSR 1237
Cdd:PRK12323 516 AAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPR 567
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
205-728 |
9.37e-11 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 66.89 E-value: 9.37e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 205 PRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRA------PAHPSQPKPKGLQ 278
Cdd:PHA03247 2575 PRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAAnepdphPPPTVPPPERPRD 2654
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 279 ALRPPQVTPPRKDAAPALGPLSSSPLATPSPsgtkaRPVPPPDNAATPLPATLPPSPPVTPPPPAALQSQAPPTLPATPH 358
Cdd:PHA03247 2655 DPAPGRVSRPRRARRLGRAAQASSPPQRPRR-----RAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAAR 2729
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 359 SSSLTCQLATPLPLAPPSPSAPPSLQTLPSPPAT--PPSQVPPTQlimsfPEAGVSSLATAAFVASVSPSVssplqsmpP 436
Cdd:PHA03247 2730 QASPALPAAPAPPAVPAGPATPGGPARPARPPTTagPPAPAPPAA-----PAAGPPRRLTRPAVASLSESR--------E 2796
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 437 TQANPALPSLPTLLSPLATPPLSAMSPLQGPVSPATSLGNSAFPLAALPQPGLSALTTPPPQASPSPSPPSLQATPHTLA 516
Cdd:PHA03247 2797 SLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPA 2876
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 517 TLPLQDSPLLATLPLQASPSPLTTVSLQDPPLVSPSLLASPplqapphpqappsMTTPPMQAPPSLQTIPPIQvphslTS 596
Cdd:PHA03247 2877 APARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPP-------------QPQPQPPPPPQPQPPPPPP-----PR 2938
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 597 PSLQAPPSPLALSSLQATTSLGSPTLQATHSFLTMSPRqTQASLISPSRPASTPPDSPPLQAPLSLPAS--PPLQTSLSP 674
Cdd:PHA03247 2939 PQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPR-FRVPQPAPSREAPASSTPPLTGHSLSRVSSwaSSLALHEET 3017
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 675 AVSPLSSPLTIHP------LQALSSLASHSPQAPLSSLIMPPLETQSSLAPPSLQTPPAS 728
Cdd:PHA03247 3018 DPPPVSLKQTLWPpddtedSDADSLFDSDSERSDLEALDPLPPEPHDPFAHEPDPATPEA 3077
|
|
| DUF4596 |
pfam15363 |
Domain of unknown function (DUF4596); This domain family is found in eukaryotes, and is ... |
1304-1346 |
6.04e-10 |
|
Domain of unknown function (DUF4596); This domain family is found in eukaryotes, and is approximately 50 amino acids in length. There is a conserved ELET sequence motif. There are two completely conserved residues (S and E) that may be functionally important.
Pssm-ID: 464673 Cd Length: 46 Bit Score: 55.70 E-value: 6.04e-10
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 299473771 1304 RWAELLSPLDESRASITsVTSFSPDDVASPQGDWTVVEVETFH 1346
Cdd:pfam15363 5 RWSELSSPLDDSSASIT-VTSFSPEDGCSPQGEWTILELETQH 46
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
57-326 |
5.43e-07 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 54.41 E-value: 5.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 57 PLAERAGGIGGATIPESAPRAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGqkgLRI 136
Cdd:PHA03307 100 PAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAA---LPL 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 137 SAEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHS 216
Cdd:PHA03307 177 SSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECP 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 217 TTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPAL 296
Cdd:PHA03307 257 LPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESS 336
|
250 260 270
....*....|....*....|....*....|
gi 299473771 297 GPLSSSPLATPSPSGTKARPVPPPDNAATP 326
Cdd:PHA03307 337 RGAAVSPGPSPSRSPSPSRPPPPADPSSPR 366
|
|
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
386-776 |
7.92e-05 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 47.45 E-value: 7.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 386 LPSPPATPPSQVPPTQLIMSFPEAGVSSLATAAFVASVSPSVSSPLQSMPPTQANPALPSLPTLLSPLATPPLSAMSPLQ 465
Cdd:pfam03154 174 LQAQSGAASPPSPPPPGTTQAATAGPTPSAPSVPPQGSPATSQPPNQTQSTAAPHTLIQQTPTLHPQRLPSPHPPLQPMT 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 466 GPVSPatslgnSAFPLAALPQPGLSALTTPPPQASPSPSPPslqaTPHTLATLPLQDSPLLATLPLQASPSPLTTVSLQD 545
Cdd:pfam03154 254 QPPPP------SQVSPQPLPQPSLHGQMPPMPHSLQTGPSH----MQHPVPPQPFPLTPQSSQSQVPPGPSPAAPGQSQQ 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 546 PPLVSPSLLASPPLQAPPHPQAPPSMTTPPMQAPPSLQTIPPIQVPHSLTSPSLQAPPSPLALSSLQATtslgSPTLQAT 625
Cdd:pfam03154 324 RIHTPPSQSQLQSQQPPREQPLPPAPLSMPHIKPPPTTPIPQLPNPQSHKHPPHLSGPSPFQMNSNLPP----PPALKPL 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 626 HSFLTMSPRQTQASlispsrPASTPPDSPPLQAPLSLPASPPLQTSLSPAVSPLSSPLTIHPLQALSSLASHSPQAPLSS 705
Cdd:pfam03154 400 SSLSTHHPPSAHPP------PLQLMPQSQQLPPPPAQPPVLTQSQSLPPPAASHPPTSGLHQVPSQSPFPQHPFVPGGPP 473
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 299473771 706 LIMPPLETQSSLAP--PSLQTP--PASLTTPPLENLPSLAPPPLQTASAPLTTPpleNLPSLAPPPLQTASAPLT 776
Cdd:pfam03154 474 PITPPSGPPTSTSSamPGIQPPssASVSSSGPVPAAVSCPLPPVQIKEEALDEA---EEPESPPPPPRSPSPEPT 545
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
646-1094 |
4.11e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 44.93 E-value: 4.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 646 PASTPPDSPPLQAPLSLPASPPLQTSLSPAVSPLSSP---------LTIHPLQALSSLASHSPQAPLSSLIMPPLETQSS 716
Cdd:PHA03247 2489 PFAAGAAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVgepvhprmlTWIRGLEELASDDAGDPPPPLPPAAPPAAPDRSV 2568
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 717 LAP--------PSLQTPPASLTTPPLENLP------------SLAPPPLQTASAPLTTPPLENLPSLAPPPLQTASAPLT 776
Cdd:PHA03247 2569 PPPrpaprpsePAVTSRARRPDAPPQSARPrapvddrgdprgPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPP 2648
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 777 TPHLETPPCPAPCPLQAPPSPLTTPPPETPSSIATPPPQAPPALASPPLQGLPSPPLSPLATPPPQAPPALALPPLQAPP 856
Cdd:PHA03247 2649 PERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAA 2728
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 857 SPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASP 936
Cdd:PHA03247 2729 RQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPP 2808
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 937 PMSPSATPPPQAPPPLAAPPLQVPPSPPASPPMSPSATPPPRVPPLLAAPPLQVPPSPPASLPMSPLAKPPPQAPPALAT 1016
Cdd:PHA03247 2809 AAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLAR 2888
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 299473771 1017 PPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVP-PSPPASPTlqaPRRPPTPGPDTSVSGPRL 1094
Cdd:PHA03247 2889 PAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPrPQPPLAPT---TDPAGAGEPSGAVPQPWL 2964
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
1026-1237 |
4.73e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 44.48 E-value: 4.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 1026 PASFPGQAPFSPSASLPMSplATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPP 1105
Cdd:PRK12323 365 PGQSGGGAGPATAAAAPVA--QPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASAR 442
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 1106 PSRSPSSTLSGPdlaghssSATSTPEELRGYDSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPWPPA 1185
Cdd:PRK12323 443 GPGGAPAPAPAP-------AAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPD 515
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 299473771 1186 TGPGSADGLCTIYETEGPESATPAPGALDPGPSPGTSGGKAAAGAGAGASSR 1237
Cdd:PRK12323 516 AAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPR 567
|
|
| PABP-1234 |
TIGR01628 |
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ... |
574-700 |
3.17e-03 |
|
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.
Pssm-ID: 130689 [Multi-domain] Cd Length: 562 Bit Score: 41.72 E-value: 3.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 574 PPMQAPPSLQTIPPIQVPHSL--TSPSLQAPPSPLALSSLQATTSLGSPTLQATHSFLT-MSPRQTQASLispSRPASTP 650
Cdd:TIGR01628 380 PRMRQLPMGSPMGGAMGQPPYygQGPQQQFNGQPLGWPRMSMMPTPMGPGGPLRPNGLApMNAVRAPSRN---AQNAAQK 456
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 299473771 651 PDSPPLQAP---LSLPASPPLQTSLSPAVSPLSSPLTIhplqalSSLASHSPQ 700
Cdd:TIGR01628 457 PPMQPVMYPpnyQSLPLSQDLPQPQSTASQGGQNKKLA------QVLASATPQ 503
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
205-728 |
9.37e-11 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 66.89 E-value: 9.37e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 205 PRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRA------PAHPSQPKPKGLQ 278
Cdd:PHA03247 2575 PRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAAnepdphPPPTVPPPERPRD 2654
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 279 ALRPPQVTPPRKDAAPALGPLSSSPLATPSPsgtkaRPVPPPDNAATPLPATLPPSPPVTPPPPAALQSQAPPTLPATPH 358
Cdd:PHA03247 2655 DPAPGRVSRPRRARRLGRAAQASSPPQRPRR-----RAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAAR 2729
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 359 SSSLTCQLATPLPLAPPSPSAPPSLQTLPSPPAT--PPSQVPPTQlimsfPEAGVSSLATAAFVASVSPSVssplqsmpP 436
Cdd:PHA03247 2730 QASPALPAAPAPPAVPAGPATPGGPARPARPPTTagPPAPAPPAA-----PAAGPPRRLTRPAVASLSESR--------E 2796
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 437 TQANPALPSLPTLLSPLATPPLSAMSPLQGPVSPATSLGNSAFPLAALPQPGLSALTTPPPQASPSPSPPSLQATPHTLA 516
Cdd:PHA03247 2797 SLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPA 2876
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 517 TLPLQDSPLLATLPLQASPSPLTTVSLQDPPLVSPSLLASPplqapphpqappsMTTPPMQAPPSLQTIPPIQvphslTS 596
Cdd:PHA03247 2877 APARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPP-------------QPQPQPPPPPQPQPPPPPP-----PR 2938
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 597 PSLQAPPSPLALSSLQATTSLGSPTLQATHSFLTMSPRqTQASLISPSRPASTPPDSPPLQAPLSLPAS--PPLQTSLSP 674
Cdd:PHA03247 2939 PQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPR-FRVPQPAPSREAPASSTPPLTGHSLSRVSSwaSSLALHEET 3017
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 675 AVSPLSSPLTIHP------LQALSSLASHSPQAPLSSLIMPPLETQSSLAPPSLQTPPAS 728
Cdd:PHA03247 3018 DPPPVSLKQTLWPpddtedSDADSLFDSDSERSDLEALDPLPPEPHDPFAHEPDPATPEA 3077
|
|
| DUF4596 |
pfam15363 |
Domain of unknown function (DUF4596); This domain family is found in eukaryotes, and is ... |
1304-1346 |
6.04e-10 |
|
Domain of unknown function (DUF4596); This domain family is found in eukaryotes, and is approximately 50 amino acids in length. There is a conserved ELET sequence motif. There are two completely conserved residues (S and E) that may be functionally important.
Pssm-ID: 464673 Cd Length: 46 Bit Score: 55.70 E-value: 6.04e-10
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 299473771 1304 RWAELLSPLDESRASITsVTSFSPDDVASPQGDWTVVEVETFH 1346
Cdd:pfam15363 5 RWSELSSPLDDSSASIT-VTSFSPEDGCSPQGEWTILELETQH 46
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
24-492 |
2.47e-08 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 59.18 E-value: 2.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 24 LLTPRPPGSPRPPPPVtpaalrvlgaAGAVGRKPLAERAGGIGGATIPESAPRAGPTRSAGTSSRNPASRPPASGRGER- 102
Cdd:PHA03247 2519 ILPDEPVGEPVHPRML----------TWIRGLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARr 2588
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 103 --APPAKNTSPGPVSSPGRASGTTRPGPLGQKGLRISAEETVARGKATEAPKRSALSAGAR-RDTSGPTPGTPSPAMARR 179
Cdd:PHA03247 2589 pdAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPeRPRDDPAPGRVSRPRRAR 2668
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 180 SRAAGTEVGLPRPAPSARPRPPTEGPrksVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSS-----ATPLSSPAR 254
Cdd:PHA03247 2669 RLGRAAQASSPPQRPRRRAARPTVGS---LTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQAspalpAAPAPPAVP 2745
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 255 SGPSARGTPRAPAHPSQPK-PKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSGtkarPVPPPDNAATPLPATLPP 333
Cdd:PHA03247 2746 AGPATPGGPARPARPPTTAgPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWD----PADPPAAVLAPAAALPPA 2821
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 334 SPPVTPPPPAALQSQAPPTLPATPHSSSLTCQLATPLPLAPPSPSAPPSLQTLPSPPATPPSQvpptqlimSFPEAGVSS 413
Cdd:PHA03247 2822 ASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVR--------RLARPAVSR 2893
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 299473771 414 LATAAFVASVSPSVSSPLQSMPPTQANPALPSLPTLLSPLATPPLSamsplQGPVSPATSLGNSAFPLAALPQPGLSAL 492
Cdd:PHA03247 2894 STESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRP-----QPPLAPTTDPAGAGEPSGAVPQPWLGAL 2967
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
49-474 |
7.82e-08 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 57.26 E-value: 7.82e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 49 AAGAVGRKPLAERAGGIGGATIPESAPRAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGP 128
Cdd:PHA03247 2581 AVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGR 2660
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 129 LGQKGLRISAEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKS 208
Cdd:PHA03247 2661 VSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPA 2740
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 209 VSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGT------PRAPAHPSQPKPKGLQAL-- 280
Cdd:PHA03247 2741 PPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESreslpsPWDPADPPAAVLAPAAALpp 2820
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 281 --RPPQVTPPRKDAAPALGPLSSSPLATPSPSGTKARP-----VPPPDNAATPLPATLPPSPPVTPPPPAALQSQAPPTL 353
Cdd:PHA03247 2821 aaSPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPggdvrRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFAL 2900
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 354 PATPHSSSLTCQLATpLPLAPPSPSAPPSLQTLPSPPATPPSQVPPTqlimsfPEAGVSSLATAAFVASVSPSVSSPLQS 433
Cdd:PHA03247 2901 PPDQPERPPQPQAPP-PPQPQPQPPPPPQPQPPPPPPPRPQPPLAPT------TDPAGAGEPSGAVPQPWLGALVPGRVA 2973
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 299473771 434 MPPTQANPALPSLPTllsPLATPPLSAMSPLQGPVSPATSL 474
Cdd:PHA03247 2974 VPRFRVPQPAPSREA---PASSTPPLTGHSLSRVSSWASSL 3011
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
57-326 |
5.43e-07 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 54.41 E-value: 5.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 57 PLAERAGGIGGATIPESAPRAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGqkgLRI 136
Cdd:PHA03307 100 PAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAA---LPL 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 137 SAEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHS 216
Cdd:PHA03307 177 SSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECP 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 217 TTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPAL 296
Cdd:PHA03307 257 LPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESS 336
|
250 260 270
....*....|....*....|....*....|
gi 299473771 297 GPLSSSPLATPSPSGTKARPVPPPDNAATP 326
Cdd:PHA03307 337 RGAAVSPGPSPSRSPSPSRPPPPADPSSPR 366
|
|
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
386-776 |
7.92e-05 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 47.45 E-value: 7.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 386 LPSPPATPPSQVPPTQLIMSFPEAGVSSLATAAFVASVSPSVSSPLQSMPPTQANPALPSLPTLLSPLATPPLSAMSPLQ 465
Cdd:pfam03154 174 LQAQSGAASPPSPPPPGTTQAATAGPTPSAPSVPPQGSPATSQPPNQTQSTAAPHTLIQQTPTLHPQRLPSPHPPLQPMT 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 466 GPVSPatslgnSAFPLAALPQPGLSALTTPPPQASPSPSPPslqaTPHTLATLPLQDSPLLATLPLQASPSPLTTVSLQD 545
Cdd:pfam03154 254 QPPPP------SQVSPQPLPQPSLHGQMPPMPHSLQTGPSH----MQHPVPPQPFPLTPQSSQSQVPPGPSPAAPGQSQQ 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 546 PPLVSPSLLASPPLQAPPHPQAPPSMTTPPMQAPPSLQTIPPIQVPHSLTSPSLQAPPSPLALSSLQATtslgSPTLQAT 625
Cdd:pfam03154 324 RIHTPPSQSQLQSQQPPREQPLPPAPLSMPHIKPPPTTPIPQLPNPQSHKHPPHLSGPSPFQMNSNLPP----PPALKPL 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 626 HSFLTMSPRQTQASlispsrPASTPPDSPPLQAPLSLPASPPLQTSLSPAVSPLSSPLTIHPLQALSSLASHSPQAPLSS 705
Cdd:pfam03154 400 SSLSTHHPPSAHPP------PLQLMPQSQQLPPPPAQPPVLTQSQSLPPPAASHPPTSGLHQVPSQSPFPQHPFVPGGPP 473
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 299473771 706 LIMPPLETQSSLAP--PSLQTP--PASLTTPPLENLPSLAPPPLQTASAPLTTPpleNLPSLAPPPLQTASAPLT 776
Cdd:pfam03154 474 PITPPSGPPTSTSSamPGIQPPssASVSSSGPVPAAVSCPLPPVQIKEEALDEA---EEPESPPPPPRSPSPEPT 545
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
116-331 |
1.83e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 46.13 E-value: 1.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 116 SPGRASGTTRPGPlgQKGLRISAEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPS 195
Cdd:PRK07764 591 APGAAGGEGPPAP--ASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDG 668
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 196 ARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPK 275
Cdd:PRK07764 669 WPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDP 748
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 299473771 276 GLQALRPPQVTPPRKDAAPAlgplssSPLATPSPSGTKARPVPPPDNAATPLPATL 331
Cdd:PRK07764 749 PDPAGAPAQPPPPPAPAPAA------APAAAPPPSPPSEEEEMAEDDAPSMDDEDR 798
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
49-320 |
3.89e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 44.84 E-value: 3.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 49 AAGAVGRKPLAERAGGIGGATIPESAPRAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGP 128
Cdd:PRK07003 386 RAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDE 465
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 129 LGQkglrisaeetvargkatEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKS 208
Cdd:PRK07003 466 RDA-----------------QPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPP 528
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 209 VSSAsehstTEPSPAARRRPSAGGGLQrpASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPkglqALRPPQVTPP 288
Cdd:PRK07003 529 APEA-----RPPTPAAAAPAARAGGAA--AALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKP----AAPRVAVQVP 597
|
250 260 270
....*....|....*....|....*....|..
gi 299473771 289 RKdAAPALGPLSSSPLATPSPSGTKARPVPPP 320
Cdd:PRK07003 598 TP-RARAATGDAPPNGAARAEQAAESRGAPPP 628
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
646-1094 |
4.11e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 44.93 E-value: 4.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 646 PASTPPDSPPLQAPLSLPASPPLQTSLSPAVSPLSSP---------LTIHPLQALSSLASHSPQAPLSSLIMPPLETQSS 716
Cdd:PHA03247 2489 PFAAGAAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVgepvhprmlTWIRGLEELASDDAGDPPPPLPPAAPPAAPDRSV 2568
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 717 LAP--------PSLQTPPASLTTPPLENLP------------SLAPPPLQTASAPLTTPPLENLPSLAPPPLQTASAPLT 776
Cdd:PHA03247 2569 PPPrpaprpsePAVTSRARRPDAPPQSARPrapvddrgdprgPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPP 2648
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 777 TPHLETPPCPAPCPLQAPPSPLTTPPPETPSSIATPPPQAPPALASPPLQGLPSPPLSPLATPPPQAPPALALPPLQAPP 856
Cdd:PHA03247 2649 PERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAA 2728
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 857 SPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASP 936
Cdd:PHA03247 2729 RQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPP 2808
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 937 PMSPSATPPPQAPPPLAAPPLQVPPSPPASPPMSPSATPPPRVPPLLAAPPLQVPPSPPASLPMSPLAKPPPQAPPALAT 1016
Cdd:PHA03247 2809 AAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLAR 2888
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 299473771 1017 PPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVP-PSPPASPTlqaPRRPPTPGPDTSVSGPRL 1094
Cdd:PHA03247 2889 PAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPrPQPPLAPT---TDPAGAGEPSGAVPQPWL 2964
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
1026-1237 |
4.73e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 44.48 E-value: 4.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 1026 PASFPGQAPFSPSASLPMSplATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPP 1105
Cdd:PRK12323 365 PGQSGGGAGPATAAAAPVA--QPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASAR 442
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 1106 PSRSPSSTLSGPdlaghssSATSTPEELRGYDSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPWPPA 1185
Cdd:PRK12323 443 GPGGAPAPAPAP-------AAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPD 515
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 299473771 1186 TGPGSADGLCTIYETEGPESATPAPGALDPGPSPGTSGGKAAAGAGAGASSR 1237
Cdd:PRK12323 516 AAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPR 567
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
48-399 |
7.60e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 43.82 E-value: 7.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 48 GAAGAVGRKPLAERAGGIGGATIPESAPRAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPG 127
Cdd:PRK07764 370 DERGLLARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAP 449
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 128 PLGQKGLRISAEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRK 207
Cdd:PRK07764 450 AGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLRERWPEILAAVPKRSRK 529
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 208 SVSSASEHST-----------TEPSPAARRRPSAGG-------------GLQRPASRSLSSSATPLSSPARSGPSARGTP 263
Cdd:PRK07764 530 TWAILLPEATvlgvrgdtlvlGFSTGGLARRFASPGnaevlvtalaeelGGDWQVEAVVGPAPGAAGGEGPPAPASSGPP 609
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 264 RAPAHPSQPKPKGlqalRPPQVTPPRKDAAPALGPLSSSPLATPSPSGTKARPVPPPDNAATPLPATLPPSPPVTPPPPA 343
Cdd:PRK07764 610 EEAARPAAPAAPA----APAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAP 685
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 299473771 344 ALQSQAPPTLPATPHSSSLTCQLATPLPLAPPSPSAPPSLQTLPSPPATPPSQVPP 399
Cdd:PRK07764 686 APAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPL 741
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
237-330 |
9.11e-04 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 43.73 E-value: 9.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 237 PASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPAlgPLSSSPLATPSPSGTKARP 316
Cdd:PRK12270 27 PSWREFFADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPK--PAAAAAAAAAPAAPPAAAA 104
|
90
....*....|....
gi 299473771 317 VPPPDNAATPLPAT 330
Cdd:PRK12270 105 AAAPAAAAVEDEVT 118
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
629-788 |
2.69e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 42.16 E-value: 2.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 629 LTMSPRQTQASLISPSRPASTPPDSPPLQAPLSLPASPPLQTSLSPAVSPLSSPLTIHPLQALSSLASHSPQAPLSSlim 708
Cdd:PRK07994 357 LAFHPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQ--- 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 709 PPLETQSSLAPPSLQTPPASlttPPLENLPSLAPPPLQTASAPlttPPLENLPSLAPPPLQTASAPLTTP--------HL 780
Cdd:PRK07994 434 GATKAKKSEPAAASRARPVN---SALERLASVRPAPSALEKAP---AKKEAYRWKATNPVEVKKEPVATPkalkkaleHE 507
|
....*...
gi 299473771 781 ETPPCPAP 788
Cdd:PRK07994 508 KTPELAAK 515
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
974-1183 |
2.92e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 42.17 E-value: 2.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 974 TPPPRVPPLLAAPPLQVPPSPPASLPMSPLAKPPPQAPPALATPPLQALPSPPASFPGQAPfsPSASLPMSPLATPPPQA 1053
Cdd:PRK12323 385 PAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPG--GAPAPAPAPAAAPAAAA 462
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 1054 PPVlAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPpsrspsstlSGPDLAGHSSSATSTPEEL 1133
Cdd:PRK12323 463 RPA-AAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQ---------PDAAPAGWVAESIPDPATA 532
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 299473771 1134 RGYDSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPWP 1183
Cdd:PRK12323 533 DPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDWP 582
|
|
| PABP-1234 |
TIGR01628 |
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ... |
574-700 |
3.17e-03 |
|
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.
Pssm-ID: 130689 [Multi-domain] Cd Length: 562 Bit Score: 41.72 E-value: 3.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 574 PPMQAPPSLQTIPPIQVPHSL--TSPSLQAPPSPLALSSLQATTSLGSPTLQATHSFLT-MSPRQTQASLispSRPASTP 650
Cdd:TIGR01628 380 PRMRQLPMGSPMGGAMGQPPYygQGPQQQFNGQPLGWPRMSMMPTPMGPGGPLRPNGLApMNAVRAPSRN---AQNAAQK 456
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 299473771 651 PDSPPLQAP---LSLPASPPLQTSLSPAVSPLSSPLTIhplqalSSLASHSPQ 700
Cdd:TIGR01628 457 PPMQPVMYPpnyQSLPLSQDLPQPQSTASQGGQNKKLA------QVLASATPQ 503
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
913-1244 |
3.39e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 42.23 E-value: 3.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 913 PPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQVPPSPPASPPMSPSATPPPRVPPLLAAPPLQVPP 992
Cdd:PHA03247 2626 PPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPP 2705
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 993 SPPASLPMSPLAKPPPQAPPALATPPLQALPSPPA--------SFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQV 1064
Cdd:PHA03247 2706 PTPEPAPHALVSATPLPPGPAAARQASPALPAAPAppavpagpATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTR 2785
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 1065 PPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGP--EG 1142
Cdd:PHA03247 2786 PAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDvrRR 2865
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 1143 GAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPWPPATGPGSADGLCTIYETEGPESATPAPGALDPGPSPGTS 1222
Cdd:PHA03247 2866 PPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAP 2945
|
330 340
....*....|....*....|..
gi 299473771 1223 GGKAAAGAGAGASSRSPKQARL 1244
Cdd:PHA03247 2946 TTDPAGAGEPSGAVPQPWLGAL 2967
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
188-396 |
4.46e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 41.40 E-value: 4.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 188 GLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPA 267
Cdd:PRK12323 370 GGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPA 449
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 268 HPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSgtkARPVPPPDNaatpLPATLPPSPPVTPPPPAALQS 347
Cdd:PRK12323 450 PAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPA---DDDPPPWEE----LPPEFASPAPAQPDAAPAGWV 522
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 299473771 348 QAPPTLPATPHSSSltcQLATPLPLAPPSPSAPPSLQTLPSPPATPPSQ 396
Cdd:PRK12323 523 AESIPDPATADPDD---AFETLAPAPAAAPAPRAAAATEPVVAPRPPRA 568
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
1042-1239 |
6.06e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 41.01 E-value: 6.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 1042 PMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPsrspsstlsgpdlag 1121
Cdd:PRK12323 374 PATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQ--------------- 438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 1122 hsssatstpeelrgydSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPWPPATGPGSADGLCTIYETE 1201
Cdd:PRK12323 439 ----------------ASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEEL 502
|
170 180 190
....*....|....*....|....*....|....*...
gi 299473771 1202 GPESATPAPGALDPGPSPGTSGGKAAAGAGAGASSRSP 1239
Cdd:PRK12323 503 PPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFET 540
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
58-287 |
6.16e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 41.01 E-value: 6.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 58 LAERAGGIGGATIPESAPrAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPlgqkglris 137
Cdd:PRK12323 361 LAFRPGQSGGGAGPATAA-AAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAP--------- 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 138 aeETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHST 217
Cdd:PRK12323 431 --EALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFAS 508
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 218 TEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTP 287
Cdd:PRK12323 509 PAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFD 578
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
1047-1246 |
6.55e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 40.74 E-value: 6.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 1047 ATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSA 1126
Cdd:PRK07764 597 GEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGA 676
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 1127 TSTPEELRGYDSGPEGGAAASPPPDAelaachPAAWSRGPAPPLAFRGAPGAPLPWPPATGPGSADGlcTIYETEGPESA 1206
Cdd:PRK07764 677 APAAPPPAPAPAAPAAPAGAAPAQPA------PAPAATPPAGQADDPAAQPPQAAQGASAPSPAADD--PVPLPPEPDDP 748
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 299473771 1207 TPAPGALDPGPSPGTSGGKAAAGAGAGASSRSPKQARLGE 1246
Cdd:PRK07764 749 PDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAED 788
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
235-318 |
7.10e-03 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 41.03 E-value: 7.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299473771 235 QRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSGTKA 314
Cdd:PRK12270 36 YGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVED 115
|
....
gi 299473771 315 RPVP 318
Cdd:PRK12270 116 EVTP 119
|
|
| |
