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Conserved domains on  [gi|291190715|ref|NP_001167443|]
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integrin alpha-8 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Integrin_alpha2 pfam08441
Integrin alpha; This domain is found in integrin alpha and integrin alpha precursors to the C ...
 483-933 0e+00

Integrin alpha; This domain is found in integrin alpha and integrin alpha precursors to the C terminus of a number of pfam01839 repeats and to the N-terminus of the pfam00357 cytoplasmic region. This region is composed of three immunoglobulin-like domains.


:

Pssm-ID: 462478 [Multi-domain]  Cd Length: 449  Bit Score: 580.05  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291190715   483 RPVVTVDAQLLLHPMIINLENKTCQIPefPTPVACFSLRVCASIAGQSI-SNTVALMAEVQLDFLKQKGAIKRTLFLHNH 561
Cdd:pfam08441    1 RPVVSVSASLQVEPNSINPEKKNCTLT--GTPVSCFTVRACFSYTGKPIpNPSLVLNYELELDRQKKKGLPPRVLFLDSQ 78

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291190715   562 QSHLIFPFVMRQQKSLHCQDFMVYLRDEteFRDKLSPINVSLNYSL--DDSTFEDGLEVKPILNHYRENVVTEQAHILVD 639
Cdd:pfam08441   79 QPSLTGTLVLLSQGRKVCRTTKAYLRDE--FRDKLSPIVISLNYSLrvDPRAPSDLPGLKPILDQNQPSTVQEQANFLKD 156

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291190715   640 CGEDNLCVPDLRLSARPD----KQEIIIGDENHLMLIINARNEGEGAYEAELFVMIPEEADYVGIeRNNKGLRLLSCEYK 715
Cdd:pfam08441  157 CGEDNVCVPDLQLSAKFDsresDEPLLLGDDNDLALEITVTNLGEDAYEAELYVTLPPGLDYSGV-RREGSEKQLSCTAK 235

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291190715   716 MENVTRMVVCDLGNPMVTGTNFSLGLRFAVPRLEKTNMSINFDLQIRSSNKDNPDSNFVSVQINVTAVAQVEIRGVSHPP 795
Cdd:pfam08441  236 KENSTRQVVCDLGNPMKRGTQVTFGLRFSVSGLELSTEELSFDLQIRSTNEQNSNSNPVSLKVPVVAEAQLSLSGVSKPD 315

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291190715   796 QIVLPIHNWEPAEEPHKEEEVGPLVEHIYELHNIGPSTISDSILEVGWPFSAREEF-LLYVFHLQTLGPLQCQTNPEINP 874
Cdd:pfam08441  316 QVVGGSVKGESAMKPRSEEDIGPLVEHTYEVINNGPSTVSGASLEISWPYELSNGKwLLYLLDVQGQGKGECSPQNEINP 395

                          410       420       430       440       450       460
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 291190715   875 QDIkpaaspEDTPELSAFLRNATIPHLVRKRDVPVVQPHRQSPAKILNCTNI-DCLQISC 933
Cdd:pfam08441  396 LNL------TQSLESSKPLRTSRVHHVVKRRDVLKSEKATQTASVLLSCDSGaRCVVIRC 449
Int_alpha smart00191
Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate ...
 382-436 3.12e-14

Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.


:

Pssm-ID: 214549 [Multi-domain]  Cd Length: 57  Bit Score: 68.17  E-value: 3.12e-14
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*.
gi 291190715    382 FGRFGSSVAHLGDLNQDGYNDIAIGVPFAGKDQR-GKVLIYNGNARGLHSKPSQVL 436
Cdd:smart00191    2 GSYFGYSVAGVGDVNGDGYPDLLVGAPRANDAGEtGAVYVYFGSSGGGNSIPLQNL 57
Int_alpha smart00191
Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate ...
 316-364 2.12e-10

Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.


:

Pssm-ID: 214549 [Multi-domain]  Cd Length: 57  Bit Score: 57.00  E-value: 2.12e-10
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|
gi 291190715    316 MASYFGYTVV-VSDVNNDGMDDILVGAPlfmereFESNPREVGQVYLYLQ 364
Cdd:smart00191    1 PGSYFGYSVAgVGDVNGDGYPDLLVGAP------RANDAGETGAVYVYFG 44
Int_alpha smart00191
Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate ...
 53-111 9.72e-07

Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.


:

Pssm-ID: 214549 [Multi-domain]  Cd Length: 57  Bit Score: 46.60  E-value: 9.72e-07
                            10        20        30        40        50        60
                    ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 291190715     53 GSYFGYSLDFYI---PDaRTASVLVGAPKANTSQpdivEGGAVYYCPWPAErSAQCKQIPFD 111
Cdd:smart00191    2 GSYFGYSVAGVGdvnGD-GYPDLLVGAPRANDAG----ETGAVYVYFGSSG-GGNSIPLQNL 57
Int_alpha smart00191
Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate ...
 447-491 3.58e-06

Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.


:

Pssm-ID: 214549 [Multi-domain]  Cd Length: 57  Bit Score: 45.06  E-value: 3.58e-06
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*
gi 291190715    447 SGFGFSLRGDADIDKNDYPDLLVGAFGEGKVAVYRARPVVTVDAQ 491
Cdd:smart00191    3 SYFGYSVAGVGDVNGDGYPDLLVGAPRANDAGETGAVYVYFGSSG 47
Integrin_alpha pfam00357
Integrin alpha cytoplasmic region; This family contains the short intracellular region of ...
 1034-1048 1.46e-03

Integrin alpha cytoplasmic region; This family contains the short intracellular region of integrin alpha chains.


:

Pssm-ID: 459778  Cd Length: 15  Bit Score: 36.71  E-value: 1.46e-03
                           10
                   ....*....|....*
gi 291190715  1034 KCGFFDRARPPQDEM 1048
Cdd:pfam00357    1 KCGFFKRNYPPQEEE 15
FG-GAP pfam01839
FG-GAP repeat; This family contains the extracellular repeat that is found in up to seven ...
 267-300 5.05e-03

FG-GAP repeat; This family contains the extracellular repeat that is found in up to seven copies in alpha integrins. This repeat has been predicted to fold into a beta propeller structure. The repeat is called the FG-GAP repeat after two conserved motifs in the repeat. The FG-GAP repeats are found in the N terminus of integrin alpha chains, a region that has been shown to be important for ligand binding. A putative Ca2+ binding motif is found in some of the repeats.


:

Pssm-ID: 460357  Cd Length: 36  Bit Score: 35.56  E-value: 5.05e-03
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 291190715   267 GYSVAAGEFTGDSLQELVAGIPRGA-QNFGYVSII 300
Cdd:pfam01839    2 GYSVAVGDLNGDGYADLAVGAPGEGgAGAGAVYVL 36
 
Name Accession Description Interval E-value
Integrin_alpha2 pfam08441
Integrin alpha; This domain is found in integrin alpha and integrin alpha precursors to the C ...
 483-933 0e+00

Integrin alpha; This domain is found in integrin alpha and integrin alpha precursors to the C terminus of a number of pfam01839 repeats and to the N-terminus of the pfam00357 cytoplasmic region. This region is composed of three immunoglobulin-like domains.


Pssm-ID: 462478 [Multi-domain]  Cd Length: 449  Bit Score: 580.05  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291190715   483 RPVVTVDAQLLLHPMIINLENKTCQIPefPTPVACFSLRVCASIAGQSI-SNTVALMAEVQLDFLKQKGAIKRTLFLHNH 561
Cdd:pfam08441    1 RPVVSVSASLQVEPNSINPEKKNCTLT--GTPVSCFTVRACFSYTGKPIpNPSLVLNYELELDRQKKKGLPPRVLFLDSQ 78

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291190715   562 QSHLIFPFVMRQQKSLHCQDFMVYLRDEteFRDKLSPINVSLNYSL--DDSTFEDGLEVKPILNHYRENVVTEQAHILVD 639
Cdd:pfam08441   79 QPSLTGTLVLLSQGRKVCRTTKAYLRDE--FRDKLSPIVISLNYSLrvDPRAPSDLPGLKPILDQNQPSTVQEQANFLKD 156

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291190715   640 CGEDNLCVPDLRLSARPD----KQEIIIGDENHLMLIINARNEGEGAYEAELFVMIPEEADYVGIeRNNKGLRLLSCEYK 715
Cdd:pfam08441  157 CGEDNVCVPDLQLSAKFDsresDEPLLLGDDNDLALEITVTNLGEDAYEAELYVTLPPGLDYSGV-RREGSEKQLSCTAK 235

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291190715   716 MENVTRMVVCDLGNPMVTGTNFSLGLRFAVPRLEKTNMSINFDLQIRSSNKDNPDSNFVSVQINVTAVAQVEIRGVSHPP 795
Cdd:pfam08441  236 KENSTRQVVCDLGNPMKRGTQVTFGLRFSVSGLELSTEELSFDLQIRSTNEQNSNSNPVSLKVPVVAEAQLSLSGVSKPD 315

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291190715   796 QIVLPIHNWEPAEEPHKEEEVGPLVEHIYELHNIGPSTISDSILEVGWPFSAREEF-LLYVFHLQTLGPLQCQTNPEINP 874
Cdd:pfam08441  316 QVVGGSVKGESAMKPRSEEDIGPLVEHTYEVINNGPSTVSGASLEISWPYELSNGKwLLYLLDVQGQGKGECSPQNEINP 395

                          410       420       430       440       450       460
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 291190715   875 QDIkpaaspEDTPELSAFLRNATIPHLVRKRDVPVVQPHRQSPAKILNCTNI-DCLQISC 933
Cdd:pfam08441  396 LNL------TQSLESSKPLRTSRVHHVVKRRDVLKSEKATQTASVLLSCDSGaRCVVIRC 449
Int_alpha smart00191
Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate ...
 382-436 3.12e-14

Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.


Pssm-ID: 214549 [Multi-domain]  Cd Length: 57  Bit Score: 68.17  E-value: 3.12e-14
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*.
gi 291190715    382 FGRFGSSVAHLGDLNQDGYNDIAIGVPFAGKDQR-GKVLIYNGNARGLHSKPSQVL 436
Cdd:smart00191    2 GSYFGYSVAGVGDVNGDGYPDLLVGAPRANDAGEtGAVYVYFGSSGGGNSIPLQNL 57
Int_alpha smart00191
Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate ...
 316-364 2.12e-10

Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.


Pssm-ID: 214549 [Multi-domain]  Cd Length: 57  Bit Score: 57.00  E-value: 2.12e-10
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|
gi 291190715    316 MASYFGYTVV-VSDVNNDGMDDILVGAPlfmereFESNPREVGQVYLYLQ 364
Cdd:smart00191    1 PGSYFGYSVAgVGDVNGDGYPDLLVGAP------RANDAGETGAVYVYFG 44
FG-GAP pfam01839
FG-GAP repeat; This family contains the extracellular repeat that is found in up to seven ...
 385-421 1.43e-08

FG-GAP repeat; This family contains the extracellular repeat that is found in up to seven copies in alpha integrins. This repeat has been predicted to fold into a beta propeller structure. The repeat is called the FG-GAP repeat after two conserved motifs in the repeat. The FG-GAP repeats are found in the N terminus of integrin alpha chains, a region that has been shown to be important for ligand binding. A putative Ca2+ binding motif is found in some of the repeats.


Pssm-ID: 460357  Cd Length: 36  Bit Score: 51.36  E-value: 1.43e-08
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 291190715   385 FGSSVAhLGDLNQDGYNDIAIGVPFAGKDQRGKVLIY 421
Cdd:pfam01839    1 FGYSVA-VGDLNGDGYADLAVGAPGEGGAGAGAVYVL 36
FG-GAP pfam01839
FG-GAP repeat; This family contains the extracellular repeat that is found in up to seven ...
 320-362 2.26e-07

FG-GAP repeat; This family contains the extracellular repeat that is found in up to seven copies in alpha integrins. This repeat has been predicted to fold into a beta propeller structure. The repeat is called the FG-GAP repeat after two conserved motifs in the repeat. The FG-GAP repeats are found in the N terminus of integrin alpha chains, a region that has been shown to be important for ligand binding. A putative Ca2+ binding motif is found in some of the repeats.


Pssm-ID: 460357  Cd Length: 36  Bit Score: 47.89  E-value: 2.26e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 291190715   320 FGYTVVVSDVNNDGMDDILVGAPLFmerefesNPREVGQVYLY 362
Cdd:pfam01839    1 FGYSVAVGDLNGDGYADLAVGAPGE-------GGAGAGAVYVL 36
Int_alpha smart00191
Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate ...
 53-111 9.72e-07

Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.


Pssm-ID: 214549 [Multi-domain]  Cd Length: 57  Bit Score: 46.60  E-value: 9.72e-07
                            10        20        30        40        50        60
                    ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 291190715     53 GSYFGYSLDFYI---PDaRTASVLVGAPKANTSQpdivEGGAVYYCPWPAErSAQCKQIPFD 111
Cdd:smart00191    2 GSYFGYSVAGVGdvnGD-GYPDLLVGAPRANDAG----ETGAVYVYFGSSG-GGNSIPLQNL 57
Int_alpha smart00191
Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate ...
 447-491 3.58e-06

Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.


Pssm-ID: 214549 [Multi-domain]  Cd Length: 57  Bit Score: 45.06  E-value: 3.58e-06
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*
gi 291190715    447 SGFGFSLRGDADIDKNDYPDLLVGAFGEGKVAVYRARPVVTVDAQ 491
Cdd:smart00191    3 SYFGYSVAGVGDVNGDGYPDLLVGAPRANDAGETGAVYVYFGSSG 47
Integrin_alpha pfam00357
Integrin alpha cytoplasmic region; This family contains the short intracellular region of ...
 1034-1048 1.46e-03

Integrin alpha cytoplasmic region; This family contains the short intracellular region of integrin alpha chains.


Pssm-ID: 459778  Cd Length: 15  Bit Score: 36.71  E-value: 1.46e-03
                           10
                   ....*....|....*
gi 291190715  1034 KCGFFDRARPPQDEM 1048
Cdd:pfam00357    1 KCGFFKRNYPPQEEE 15
FG-GAP pfam01839
FG-GAP repeat; This family contains the extracellular repeat that is found in up to seven ...
 267-300 5.05e-03

FG-GAP repeat; This family contains the extracellular repeat that is found in up to seven copies in alpha integrins. This repeat has been predicted to fold into a beta propeller structure. The repeat is called the FG-GAP repeat after two conserved motifs in the repeat. The FG-GAP repeats are found in the N terminus of integrin alpha chains, a region that has been shown to be important for ligand binding. A putative Ca2+ binding motif is found in some of the repeats.


Pssm-ID: 460357  Cd Length: 36  Bit Score: 35.56  E-value: 5.05e-03
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 291190715   267 GYSVAAGEFTGDSLQELVAGIPRGA-QNFGYVSII 300
Cdd:pfam01839    2 GYSVAVGDLNGDGYADLAVGAPGEGgAGAGAVYVL 36
 
Name Accession Description Interval E-value
Integrin_alpha2 pfam08441
Integrin alpha; This domain is found in integrin alpha and integrin alpha precursors to the C ...
 483-933 0e+00

Integrin alpha; This domain is found in integrin alpha and integrin alpha precursors to the C terminus of a number of pfam01839 repeats and to the N-terminus of the pfam00357 cytoplasmic region. This region is composed of three immunoglobulin-like domains.


Pssm-ID: 462478 [Multi-domain]  Cd Length: 449  Bit Score: 580.05  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291190715   483 RPVVTVDAQLLLHPMIINLENKTCQIPefPTPVACFSLRVCASIAGQSI-SNTVALMAEVQLDFLKQKGAIKRTLFLHNH 561
Cdd:pfam08441    1 RPVVSVSASLQVEPNSINPEKKNCTLT--GTPVSCFTVRACFSYTGKPIpNPSLVLNYELELDRQKKKGLPPRVLFLDSQ 78

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291190715   562 QSHLIFPFVMRQQKSLHCQDFMVYLRDEteFRDKLSPINVSLNYSL--DDSTFEDGLEVKPILNHYRENVVTEQAHILVD 639
Cdd:pfam08441   79 QPSLTGTLVLLSQGRKVCRTTKAYLRDE--FRDKLSPIVISLNYSLrvDPRAPSDLPGLKPILDQNQPSTVQEQANFLKD 156

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291190715   640 CGEDNLCVPDLRLSARPD----KQEIIIGDENHLMLIINARNEGEGAYEAELFVMIPEEADYVGIeRNNKGLRLLSCEYK 715
Cdd:pfam08441  157 CGEDNVCVPDLQLSAKFDsresDEPLLLGDDNDLALEITVTNLGEDAYEAELYVTLPPGLDYSGV-RREGSEKQLSCTAK 235

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291190715   716 MENVTRMVVCDLGNPMVTGTNFSLGLRFAVPRLEKTNMSINFDLQIRSSNKDNPDSNFVSVQINVTAVAQVEIRGVSHPP 795
Cdd:pfam08441  236 KENSTRQVVCDLGNPMKRGTQVTFGLRFSVSGLELSTEELSFDLQIRSTNEQNSNSNPVSLKVPVVAEAQLSLSGVSKPD 315

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291190715   796 QIVLPIHNWEPAEEPHKEEEVGPLVEHIYELHNIGPSTISDSILEVGWPFSAREEF-LLYVFHLQTLGPLQCQTNPEINP 874
Cdd:pfam08441  316 QVVGGSVKGESAMKPRSEEDIGPLVEHTYEVINNGPSTVSGASLEISWPYELSNGKwLLYLLDVQGQGKGECSPQNEINP 395

                          410       420       430       440       450       460
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 291190715   875 QDIkpaaspEDTPELSAFLRNATIPHLVRKRDVPVVQPHRQSPAKILNCTNI-DCLQISC 933
Cdd:pfam08441  396 LNL------TQSLESSKPLRTSRVHHVVKRRDVLKSEKATQTASVLLSCDSGaRCVVIRC 449
Int_alpha smart00191
Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate ...
 382-436 3.12e-14

Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.


Pssm-ID: 214549 [Multi-domain]  Cd Length: 57  Bit Score: 68.17  E-value: 3.12e-14
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*.
gi 291190715    382 FGRFGSSVAHLGDLNQDGYNDIAIGVPFAGKDQR-GKVLIYNGNARGLHSKPSQVL 436
Cdd:smart00191    2 GSYFGYSVAGVGDVNGDGYPDLLVGAPRANDAGEtGAVYVYFGSSGGGNSIPLQNL 57
Int_alpha smart00191
Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate ...
 316-364 2.12e-10

Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.


Pssm-ID: 214549 [Multi-domain]  Cd Length: 57  Bit Score: 57.00  E-value: 2.12e-10
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|
gi 291190715    316 MASYFGYTVV-VSDVNNDGMDDILVGAPlfmereFESNPREVGQVYLYLQ 364
Cdd:smart00191    1 PGSYFGYSVAgVGDVNGDGYPDLLVGAP------RANDAGETGAVYVYFG 44
FG-GAP pfam01839
FG-GAP repeat; This family contains the extracellular repeat that is found in up to seven ...
 385-421 1.43e-08

FG-GAP repeat; This family contains the extracellular repeat that is found in up to seven copies in alpha integrins. This repeat has been predicted to fold into a beta propeller structure. The repeat is called the FG-GAP repeat after two conserved motifs in the repeat. The FG-GAP repeats are found in the N terminus of integrin alpha chains, a region that has been shown to be important for ligand binding. A putative Ca2+ binding motif is found in some of the repeats.


Pssm-ID: 460357  Cd Length: 36  Bit Score: 51.36  E-value: 1.43e-08
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 291190715   385 FGSSVAhLGDLNQDGYNDIAIGVPFAGKDQRGKVLIY 421
Cdd:pfam01839    1 FGYSVA-VGDLNGDGYADLAVGAPGEGGAGAGAVYVL 36
FG-GAP pfam01839
FG-GAP repeat; This family contains the extracellular repeat that is found in up to seven ...
 320-362 2.26e-07

FG-GAP repeat; This family contains the extracellular repeat that is found in up to seven copies in alpha integrins. This repeat has been predicted to fold into a beta propeller structure. The repeat is called the FG-GAP repeat after two conserved motifs in the repeat. The FG-GAP repeats are found in the N terminus of integrin alpha chains, a region that has been shown to be important for ligand binding. A putative Ca2+ binding motif is found in some of the repeats.


Pssm-ID: 460357  Cd Length: 36  Bit Score: 47.89  E-value: 2.26e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 291190715   320 FGYTVVVSDVNNDGMDDILVGAPLFmerefesNPREVGQVYLY 362
Cdd:pfam01839    1 FGYSVAVGDLNGDGYADLAVGAPGE-------GGAGAGAVYVL 36
Int_alpha smart00191
Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate ...
 53-111 9.72e-07

Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.


Pssm-ID: 214549 [Multi-domain]  Cd Length: 57  Bit Score: 46.60  E-value: 9.72e-07
                            10        20        30        40        50        60
                    ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 291190715     53 GSYFGYSLDFYI---PDaRTASVLVGAPKANTSQpdivEGGAVYYCPWPAErSAQCKQIPFD 111
Cdd:smart00191    2 GSYFGYSVAGVGdvnGD-GYPDLLVGAPRANDAG----ETGAVYVYFGSSG-GGNSIPLQNL 57
Int_alpha smart00191
Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate ...
 447-491 3.58e-06

Integrin alpha (beta-propellor repeats); Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.


Pssm-ID: 214549 [Multi-domain]  Cd Length: 57  Bit Score: 45.06  E-value: 3.58e-06
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*
gi 291190715    447 SGFGFSLRGDADIDKNDYPDLLVGAFGEGKVAVYRARPVVTVDAQ 491
Cdd:smart00191    3 SYFGYSVAGVGDVNGDGYPDLLVGAPRANDAGETGAVYVYFGSSG 47
FG-GAP_3 pfam13517
FG-GAP-like repeat; This entry represents a repeat found in alpha integrins and related ...
 328-405 2.12e-05

FG-GAP-like repeat; This entry represents a repeat found in alpha integrins and related proteins in which form a 7-fold repeat that adopts a beta-propeller fold. This repeat contains a putative calcium-binding site. These repeats are found in multiple proteins from eukaryotes and bacteria and mediate diverse biological processes at both molecular and cellular levels, such as cell-cell interactions, host-pathogen recognition or innate immune responses.


Pssm-ID: 433275 [Multi-domain]  Cd Length: 61  Bit Score: 42.98  E-value: 2.12e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 291190715   328 DVNNDGMDDILVGAPlfmerefesnprevGQVYLYLQVSALLFQDPQVLTGTETFGRFGssvAHLGDLNQDGYNDIAI 405
Cdd:pfam13517    1 DLDGDGKLDLVVAND--------------GGLRLYLNNGDGTFTFITSVSLGGGGGGLS---VAVGDLDGDGRLDLLV 61
FG-GAP_3 pfam13517
FG-GAP-like repeat; This entry represents a repeat found in alpha integrins and related ...
 394-469 5.76e-04

FG-GAP-like repeat; This entry represents a repeat found in alpha integrins and related proteins in which form a 7-fold repeat that adopts a beta-propeller fold. This repeat contains a putative calcium-binding site. These repeats are found in multiple proteins from eukaryotes and bacteria and mediate diverse biological processes at both molecular and cellular levels, such as cell-cell interactions, host-pathogen recognition or innate immune responses.


Pssm-ID: 433275 [Multi-domain]  Cd Length: 61  Bit Score: 39.13  E-value: 5.76e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 291190715   394 DLNQDGYNDIaigvpFAGKDQRGKVLIYNGNARGLHSKPSQVLQGIWGSQTIPsgfgfslrgdADIDKNDYPDLLV 469
Cdd:pfam13517    1 DLDGDGKLDL-----VVANDGGLRLYLNNGDGTFTFITSVSLGGGGGGLSVAV----------GDLDGDGRLDLLV 61
Integrin_alpha pfam00357
Integrin alpha cytoplasmic region; This family contains the short intracellular region of ...
 1034-1048 1.46e-03

Integrin alpha cytoplasmic region; This family contains the short intracellular region of integrin alpha chains.


Pssm-ID: 459778  Cd Length: 15  Bit Score: 36.71  E-value: 1.46e-03
                           10
                   ....*....|....*
gi 291190715  1034 KCGFFDRARPPQDEM 1048
Cdd:pfam00357    1 KCGFFKRNYPPQEEE 15
FG-GAP pfam01839
FG-GAP repeat; This family contains the extracellular repeat that is found in up to seven ...
 267-300 5.05e-03

FG-GAP repeat; This family contains the extracellular repeat that is found in up to seven copies in alpha integrins. This repeat has been predicted to fold into a beta propeller structure. The repeat is called the FG-GAP repeat after two conserved motifs in the repeat. The FG-GAP repeats are found in the N terminus of integrin alpha chains, a region that has been shown to be important for ligand binding. A putative Ca2+ binding motif is found in some of the repeats.


Pssm-ID: 460357  Cd Length: 36  Bit Score: 35.56  E-value: 5.05e-03
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 291190715   267 GYSVAAGEFTGDSLQELVAGIPRGA-QNFGYVSII 300
Cdd:pfam01839    2 GYSVAVGDLNGDGYADLAVGAPGEGgAGAGAVYVL 36
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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