|
Name |
Accession |
Description |
Interval |
E-value |
| TMTC_DUF1736 |
pfam08409 |
Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in ... |
247-321 |
7.10e-37 |
|
Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in O-mannosyl -transferases TMTC1-4, and constitutes a loop between TM7 and TM8 located in the ER lumen that contains a small hydrophobic, but not membrane-embedded helix. This loop is critical for catalysis and binding of ligands, especially the lipid-linked sugar moiety. TMTCs transfers mannosyl residues to the hydroxyl group of serine or threonine residues. The 4 members of the TMTC family are O-mannosyl-transferases acting primarily on the cadherin superfamily; each member has distinct roles in decorating the cadherin domains with O-linked mannose glycans at specific regions. These proteins also act as O-mannosyl-transferase on other proteins such as PDIA3.
Pssm-ID: 462468 Cd Length: 75 Bit Score: 132.65 E-value: 7.10e-37
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 330340424 247 GNKPPSFSNSDNPAADSDSLLARTLTFFYLPTKNLWLLLCPDTLSFDWSMDAVPLLKTVCDWRNLHTVAFYSGLL 321
Cdd:pfam08409 1 GGQLPVFSASDNPAAFSPSLLTRTLTYNYLPALNAWLLLFPSWLCFDWSMGSIPLIESLSDPRNLATLAFYGALA 75
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
511-807 |
5.99e-28 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 114.06 E-value: 5.99e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 511 EAEIAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAVGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEI 590
Cdd:COG2956 26 KAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLEL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 591 PDENLkdphahkssvtSCLYNLGKLYHEQGRYEEALSVYREAIQKMPRQFApqsLYNMMGEAYMRLSKLPEAEHWYMESL 670
Cdd:COG2956 106 DPDDA-----------EALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAH---AYCELAELYLEQGDYDEAIEALEKAL 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 671 RSKTDHIPAHLTYGKLLALTGRKSEAEKFFLKAIELDPTKGNCYMHYGQFLLEESRLteaaemakkaaeldstefdvvfn 750
Cdd:COG2956 172 KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDP----------------------- 228
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 330340424 751 aahmlrqaslnEAAEKYYDLAARLRPNyPAALMNLGAILHLNGRLQKAEANYLRALQ 807
Cdd:COG2956 229 -----------EEALELLRKALELDPS-DDLLLALADLLERKEGLEAALALLERQLR 273
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
488-707 |
1.70e-27 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 112.02 E-value: 1.70e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 488 IKVNP--AKAWGNLGNVLKSQSKISEAEIAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAVGSRPTLASAYL 565
Cdd:COG0457 1 LELDPddAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 566 NTGIILMNQGKTEEARRTFLKCSEIpdeNLKDPHAHkssvtsclYNLGKLYHEQGRYEEALSVYREAIQKMPRQfapQSL 645
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALEL---DPDDAEAL--------YNLGLALLELGRYDEAIEAYERALELDPDD---ADA 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 330340424 646 YNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKFFLKAIELD 707
Cdd:COG0457 147 LYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALR 208
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
560-812 |
7.33e-27 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 110.97 E-value: 7.33e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 560 LASAYLNTGIILMNQGKTEEARRTFLKCSEIPDENLKdphAHkssvtsclYNLGKLYHEQGRYEEALSVYREAIQKMPRQ 639
Cdd:COG2956 7 AALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVE---AH--------LALGNLYRRRGEYDRAIRIHQKLLERDPDR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 640 FApqsLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKFFLKAIELDPTKGNCYMHYGQ 719
Cdd:COG2956 76 AE---ALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAE 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 720 FLLEESRLTEAAEMAKKAAELDSTEFDVVFNAAHMLRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAE 799
Cdd:COG2956 153 LYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEAL 232
|
250
....*....|...
gi 330340424 800 ANYLRALQLKPDD 812
Cdd:COG2956 233 ELLRKALELDPSD 245
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
454-708 |
4.55e-26 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 108.66 E-value: 4.55e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 454 LVFYATATLIVFYGLKtAIRNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAEIAYRNALYYRSNMADMLY 531
Cdd:COG2956 2 LLPVAAALGWYFKGLN-YLLNGQPDKAIDLLEEALELDPetVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 532 NLGLLLQENSRFAEALHYYKLAVGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEIPDENlkdPHAHkssvtsclYN 611
Cdd:COG2956 81 ELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPEN---AHAY--------CE 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 612 LGKLYHEQGRYEEALSVYREAIQKMPRQFAPqslYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTG 691
Cdd:COG2956 150 LAELYLEQGDYDEAIEALEKALKLDPDCARA---LLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLG 226
|
250
....*....|....*..
gi 330340424 692 RKSEAEKFFLKAIELDP 708
Cdd:COG2956 227 DPEEALELLRKALELDP 243
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
473-707 |
9.02e-26 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 107.89 E-value: 9.02e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 473 RNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAEIAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYY 550
Cdd:COG2956 54 RRGEYDRAIRIHQKLLERDPdrAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVL 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 551 KLAVGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEIpdenlkDPHAHKSsvtscLYNLGKLYHEQGRYEEALSVYR 630
Cdd:COG2956 134 ERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL------DPDCARA-----LLLLAELYLEQGDYEEAIAALE 202
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 330340424 631 EAIQKMPRQFapqSLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDhIPAHLTYGKLLALTGRKSEAEKFFLKAIELD 707
Cdd:COG2956 203 RALEQDPDYL---PALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
558-809 |
1.04e-25 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 106.63 E-value: 1.04e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 558 PTLASAYLNTGIILMNQGKTEEARRTFLKCSEIpdenlkDPHAHKSsvtscLYNLGKLYHEQGRYEEALSVYREAIQKMP 637
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL------DPDDAEA-----LYNLGLAYLRLGRYEEALADYEQALELDP 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 638 RQFApqsLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKFFLKAIELDPTKGNCYMHY 717
Cdd:COG0457 74 DDAE---ALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 718 GQFLLEESRLTEAAEMAKKAAELDSTEFDVVFNAAHMLRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQK 797
Cdd:COG0457 151 GIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALL 230
|
250
....*....|..
gi 330340424 798 AEANYLRALQLK 809
Cdd:COG0457 231 LALRLAALALYQ 242
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
608-812 |
6.11e-25 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 104.70 E-value: 6.11e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 608 CLYNLGKLYHEQGRYEEALSVYREAIQKMPRQfaPQSLYNMmGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLL 687
Cdd:COG0457 10 AYNNLGLAYRRLGRYEEAIEDYEKALELDPDD--AEALYNL-GLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 688 ALTGRKSEAEKFFLKAIELDPTKGNCYMHYGQFLLEESRLteaaemakkaaeldstefdvvfnaahmlrqaslnEAAEKY 767
Cdd:COG0457 87 QALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRY----------------------------------DEAIEA 132
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 330340424 768 YDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDD 812
Cdd:COG0457 133 YERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAA 177
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
473-634 |
9.10e-24 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 101.24 E-value: 9.10e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 473 RNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAEIAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYY 550
Cdd:COG0457 20 RLGRYEEAIEDYEKALELDPddAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDY 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 551 KLAVGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEIpdeNLKDPHAHkssvtsclYNLGKLYHEQGRYEEALSVYR 630
Cdd:COG0457 100 DKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALEL---DPDDADAL--------YNLGIALEKLGRYEEALELLE 168
|
....
gi 330340424 631 EAIQ 634
Cdd:COG0457 169 KLEA 172
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
511-795 |
9.10e-23 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 103.92 E-value: 9.10e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 511 EAEIAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAVGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEI 590
Cdd:COG3914 28 LAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALAL 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 591 pdenlkDPHAHKSsvtscLYNLGKLYHEQGRYEEALSVYREAIQKMPRQFApqsLYNMMGEAYMRLSKLPEAEHWYMESL 670
Cdd:COG3914 108 ------NPDNAEA-----LFNLGNLLLALGRLEEALAALRRALALNPDFAE---AYLNLGEALRRLGRLEEAIAALRRAL 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 671 RSKTDHIPAHLTYGKLLALTGRKSEAEKFFLKAIELDPTKGNCYMHYGQFLLEESRLTEAAEMAKKAAELDSTEFDVVFN 750
Cdd:COG3914 174 ELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELSPF 253
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 330340424 751 AAHMLRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRL 795
Cdd:COG3914 254 ALLYLPDDDPAELLALARAWAQLVAAAAAPELPPPPNPRDPDRKL 298
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
499-646 |
3.09e-21 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 98.91 E-value: 3.09e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 499 LGNVLKSQSKISEAEIAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAVGSRPTLASAYLNTGIILMNQGKTE 578
Cdd:COG3914 84 AALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLE 163
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 330340424 579 EARRTFLKCSEI-PDenlkDPHAHkssvtsclYNLGKLYHEQGRYEEALSVYREAIQKMPRQFAPQSLY 646
Cdd:COG3914 164 EAIAALRRALELdPD----NAEAL--------NNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
473-596 |
5.39e-21 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 98.14 E-value: 5.39e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 473 RNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAEIAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYY 550
Cdd:COG3914 90 ALGRYEEALALYRRALALNPdnAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAAL 169
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 330340424 551 KLAVGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEIPDENLK 596
Cdd:COG3914 170 RRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNAD 215
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
472-671 |
1.53e-20 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 92.48 E-value: 1.53e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 472 IRNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAEIAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHY 549
Cdd:COG2956 87 LKAGLLDRAEELLEKLLELDPddAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEA 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 550 YKLAVGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEIpdenlkDPHAhkssvTSCLYNLGKLYHEQGRYEEALSVY 629
Cdd:COG2956 167 LEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQ------DPDY-----LPALPRLAELYEKLGDPEEALELL 235
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 330340424 630 REAIQKMPRqfapQSLYNMMGEAYMRLSKLPEAEHWYMESLR 671
Cdd:COG2956 236 RKALELDPS----DDLLLALADLLERKEGLEAALALLERQLR 273
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
561-708 |
5.55e-20 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 86.78 E-value: 5.55e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 561 ASAYLNTGIILMNQGKTEEARRTFLKCSEIPDENlkdPHAhkssvtscLYNLGKLYHEQGRYEEALSVYREAIQKMPRQF 640
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDN---PEA--------FALLGEILLQLGDLDEAIVLLHEALELDPDEP 72
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 330340424 641 ApqsLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKFFLKAIELDP 708
Cdd:COG4783 73 E---ARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
593-819 |
1.55e-19 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 93.52 E-value: 1.55e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 593 ENLKDPHAHKSSVTSCLYNLGKLYHEQGRYEEALSVYREAIQKMPRQFAPQSLYNMMGEAYMRLSKLPEAEHWYMESLRS 672
Cdd:COG3914 28 LAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALAL 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 673 KTDHIPAHLTYGKLLALTGRKSEAEKFFLKAIELDPTKGNCYMHYGQFLLEESRLteaaemakkaaeldstefdvvfnaa 752
Cdd:COG3914 108 NPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRL------------------------- 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 330340424 753 hmlrqaslnEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDDVITQSNL 819
Cdd:COG3914 163 ---------EEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
532-801 |
5.74e-19 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 91.98 E-value: 5.74e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 532 NLGLLLQENSRFAEALHYYKLAVGSRPTLASAYLNTGIILMNQGKTEEARRTFLkcSEIPDENLKDPHAHKSSVTSCLYN 611
Cdd:COG3914 6 LLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAAL--LALAAGEAAAAAAALLLLAALLEL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 612 LGKLYHEQGRYEEALSVYREAIQKMPRQFApqsLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTG 691
Cdd:COG3914 84 AALLLQALGRYEEALALYRRALALNPDNAE---ALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 692 RKSEAEKFFLKAIELDPTKGNCYMHYGQFLLEESRLTEAAEMAKKAAELDSTEFDVVFNAAHMLRQASLNEAAEKYYDLA 771
Cdd:COG3914 161 RLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELL 240
|
250 260 270
....*....|....*....|....*....|...
gi 330340424 772 ARLRpNYPAALMNLgAILHLNG---RLQKAEAN 801
Cdd:COG3914 241 AALA-RGPSELSPF-ALLYLPDddpAELLALAR 271
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
524-676 |
7.23e-18 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 81.01 E-value: 7.23e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 524 SNMADMLYNLGLLLQENSRFAEALHYYKLAVGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEI-PDEnlkdPHAHk 602
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELdPDE----PEAR- 75
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 330340424 603 ssvtsclYNLGKLYHEQGRYEEALSVYREAIQKMPRQfaPQSLYNmMGEAYMRLSKLPEAEHWYMESLRSKTDH 676
Cdd:COG4783 76 -------LNLGLALLKAGDYDEALALLEKALKLDPEH--PEAYLR-LARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
641-812 |
2.47e-17 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 79.47 E-value: 2.47e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 641 APQSLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKFFLKAIELDPTkgncymhygqf 720
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPD----------- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 721 lleesrlteaaemakkaaeldstEFDVVFNAAHMLRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEA 800
Cdd:COG4783 71 -----------------------EPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIA 127
|
170
....*....|..
gi 330340424 801 NYLRALQLKPDD 812
Cdd:COG4783 128 ALEKALELDPDD 139
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
670-819 |
3.15e-16 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 79.28 E-value: 3.15e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 670 LRSKTDHIPAHLTYGKLLALTGRKSEAEKFFLKAIELDPTKGNCYMHYGQFLLEESRLTEAAEMAKKAAELDSTEFDVVF 749
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 750 NAAHMLRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDDVITQSNL 819
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNL 150
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
609-727 |
3.98e-16 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 76.00 E-value: 3.98e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 609 LYNLGKLYHEQGRYEEALSVYREAIQKMPRQFApqsLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLA 688
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPDNPE---AFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110
....*....|....*....|....*....|....*....
gi 330340424 689 LTGRKSEAEKFFLKAIELDPTKGNCYMHYGQFLLEESRL 727
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRP 122
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
493-639 |
7.25e-16 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 75.23 E-value: 7.25e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 493 AKAWGNLGNVLKSQSKISEAEIAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAVGSRPTLASAYLNTGIILM 572
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 330340424 573 NQGKTEEARRTFLKCSEIpdeNLKDPHAHkssvtsclYNLGKLYHEQGRYEEALSVYREAIQKMPRQ 639
Cdd:COG4783 84 KAGDYDEALALLEKALKL---DPEHPEAY--------LRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
511-652 |
1.36e-14 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 71.19 E-value: 1.36e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 511 EAEIAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAVGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEI 590
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 330340424 591 pdenlkDPHAHKSsvtscLYNLGKLYHEQGRYEEALSVYREAIQKMPRQFAPQSLYNMMGEA 652
Cdd:COG4235 81 ------DPDNPEA-----LYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIAEA 131
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
492-821 |
3.98e-14 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 76.66 E-value: 3.98e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 492 PAKAWGNLGNVLKSQSKISEAEIAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAVGSRPTLASAYLNTGIIL 571
Cdd:TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLL 679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 572 MNQGKTEEARRTFlkcSEIPDENLKDPHAHKSsvtsclynLGKLYHEQGRYEEALSVYREAIQKmprqfAPQSLYNM-MG 650
Cdd:TIGR02917 680 LAAKRTESAKKIA---KSLQKQHPKAALGFEL--------EGDLYLRQKDYPAAIQAYRKALKR-----APSSQNAIkLH 743
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 651 EAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKFFLKAIELDPtkgncymhygqflleesrltea 730
Cdd:TIGR02917 744 RALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAP---------------------- 801
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 731 aemakkaaeldstEFDVVFNAAHMLRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKP 810
Cdd:TIGR02917 802 -------------DNAVVLNNLAWLYLELKDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868
|
330
....*....|.
gi 330340424 811 DDVITQSNLRK 821
Cdd:TIGR02917 869 EAAAIRYHLAL 879
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
615-708 |
6.57e-14 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 69.99 E-value: 6.57e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 615 LYHEQGRYEEALSVYREAIQKMPRQFApqsLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKS 694
Cdd:COG5010 63 LYNKLGDFEESLALLEQALQLDPNNPE---LYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDD 139
|
90
....*....|....
gi 330340424 695 EAEKFFLKAIELDP 708
Cdd:COG5010 140 EAKAALQRALGTSP 153
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
533-824 |
2.04e-13 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 74.35 E-value: 2.04e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 533 LGLLLQENSRFAEALHYYKLAVGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEIPDENlkdPHAHKSSVTSclynl 612
Cdd:TIGR02917 369 LGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPEL---GRADLLLILS----- 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 613 gklYHEQGRYEEALSVYREAIQKMPRQfapQSLYNMMGEAYMRLSKLPEAEHWYMESLRSKTD----------------- 675
Cdd:TIGR02917 441 ---YLRSGQFDKALAAAKKLEKKQPDN---ASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDffpaaanlaridiqegn 514
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 676 -----------------HIPAHLTYGKLLALTGRKSEAEKFFLKAIELDPTKGNCYMHYGQFLLEESRLTEAAEMAKKAA 738
Cdd:TIGR02917 515 pddaiqrfekvltidpkNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAA 594
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 739 EL--DSTEFDVVFNAAHmLRQASLNEAAEKYYDLAARLrPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDDVITQ 816
Cdd:TIGR02917 595 DAapDSPEAWLMLGRAQ-LAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQ 672
|
....*...
gi 330340424 817 SNLRKLWN 824
Cdd:TIGR02917 673 IGLAQLLL 680
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
470-582 |
3.24e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 73.49 E-value: 3.24e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 470 TAIRNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAEIAYRNALYYRSNMADMLYNLGLLLQENSRFAEAL 547
Cdd:COG3914 121 LLLALGRLEEALAALRRALALNPdfAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAI 200
|
90 100 110
....*....|....*....|....*....|....*
gi 330340424 548 HYYKLAVGSRPTLASAYLNTGIILMNQGKTEEARR 582
Cdd:COG3914 201 AAYRRALELDPDNADAHSNLLFALRQACDWEVYDR 235
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
469-594 |
3.25e-13 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 67.52 E-value: 3.25e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 469 KTAIRNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAEIAYRNALYYRSNMADMLYNLGLLLQENSRFAEA 546
Cdd:COG4783 12 QALLLAGDYDEAEALLEKALELDPdnPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEA 91
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 330340424 547 LHYYKLAVGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEIPDEN 594
Cdd:COG4783 92 LALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
492-822 |
4.11e-13 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 73.19 E-value: 4.11e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 492 PAKAWGNLGNVLKSQSKISEAEIAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAVGSRPTLASAYLNTGIIL 571
Cdd:TIGR02917 192 NVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVD 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 572 MNQGKTEEARRTFLKCSEIPDENLkdphahkssvtSCLYNLGKLYHEQGRYEEALSVYREAIQKMPRQfaPQSLyNMMGE 651
Cdd:TIGR02917 272 FQKKNYEDARETLQDALKSAPEYL-----------PALLLAGASEYQLGNLEQAYQYLNQILKYAPNS--HQAR-RLLAS 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 652 AYMRLSKlpeaehwYMESLRSKTDHIPAHLTYGKLLALTGRK-------SEAEKFFLKAIELDPTKGNCYMHYGQFLLEE 724
Cdd:TIGR02917 338 IQLRLGR-------VDEAIATLSPALGLDPDDPAALSLLGEAylalgdfEKAAEYLAKATELDPENAAARTQLGISKLSQ 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 725 SRLTEAAEMAKKAAELDSTEFDV-VFNAAHMLRQASLNEAAEkyydLAARLRPNYP--AALMNL-GAILHLNGRLQKAEA 800
Cdd:TIGR02917 411 GDPSEAIADLETAAQLDPELGRAdLLLILSYLRSGQFDKALA----AAKKLEKKQPdnASLHNLlGAIYLGKGDLAKARE 486
|
330 340
....*....|....*....|..
gi 330340424 801 NYLRALQLKPDDVITQSNLRKL 822
Cdd:TIGR02917 487 AFEKALSIEPDFFPAAANLARI 508
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
493-634 |
5.73e-13 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 69.17 E-value: 5.73e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 493 AKAWGNLGNVLKSQSKISEAEIAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAVGSRPTLASAYLNTGIILM 572
Cdd:COG4785 73 AQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALY 152
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 330340424 573 NQGKTEEARRTFLKCSEIPDEN------------LKDPHAHKSSVTSclyNLGKLYHEQGRYEEALSVYREAIQ 634
Cdd:COG4785 153 YLGRYELAIADLEKALELDPNDperalwlylaerKLDPEKALALLLE---DWATAYLLQGDTEEARELFKLALA 223
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
615-708 |
2.30e-12 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 63.65 E-value: 2.30e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 615 LYHEQGRYEEALSVYREAIQKMPRQFApqsLYNMMGEAYMRLSKLPEAEHwYMESLRSKTDHIPAHLTYGKLLALTGRKS 694
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNAD---ALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYD 76
|
90
....*....|....
gi 330340424 695 EAEKFFLKAIELDP 708
Cdd:COG3063 77 EALAYLERALELDP 90
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
515-639 |
3.19e-12 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 65.37 E-value: 3.19e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 515 AYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAVGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEIPDEN 594
Cdd:COG5010 42 LAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDN 121
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 330340424 595 lkdPHAHkssvtsclYNLGKLYHEQGRYEEALSVYREAIQKMPRQ 639
Cdd:COG5010 122 ---PNAY--------SNLAALLLSLGQDDEAKAALQRALGTSPLK 155
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
661-812 |
1.13e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 62.72 E-value: 1.13e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 661 EAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKFFLKAIELDPTKGncymhygqflleesrlteaaemakkaael 740
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNA----------------------------- 51
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 330340424 741 dstefDVVFNAAHMLRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDD 812
Cdd:COG4235 52 -----DALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
512-672 |
1.21e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 63.44 E-value: 1.21e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 512 AEIAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAVGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEIp 591
Cdd:COG5010 5 EGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 592 deNLKDPHAHkssvtsclYNLGKLYHEQGRYEEALSVYREAIQKMPRQfaPQSLYNmMGEAYMRLSKLPEAEHWYMESLR 671
Cdd:COG5010 84 --DPNNPELY--------YNLALLYSRSGDKDEAKEYYEKALALSPDN--PNAYSN-LAALLLSLGQDDEAKAALQRALG 150
|
.
gi 330340424 672 S 672
Cdd:COG5010 151 T 151
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
484-594 |
1.29e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 62.72 E-value: 1.29e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 484 YRSGIKVNP--AKAWGNLGNVLKSQSKISEAEIAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAVGSRPTLA 561
Cdd:COG4235 6 LRQALAANPndAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNP 85
|
90 100 110
....*....|....*....|....*....|...
gi 330340424 562 SAYLNTGIILMNQGKTEEARRTFLKCSEIPDEN 594
Cdd:COG4235 86 EALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
536-638 |
1.31e-11 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 61.34 E-value: 1.31e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 536 LLQENSRFAEALHYYKLAVGSRPTLASAYLNTGIILMNQGKTEEARRtFLKCSEIpdeNLKDPHAhkssvtscLYNLGKL 615
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKL---DPNNAEA--------LLNLAEL 68
|
90 100
....*....|....*....|...
gi 330340424 616 YHEQGRYEEALSVYREAIQKMPR 638
Cdd:COG3063 69 LLELGDYDEALAYLERALELDPS 91
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
440-586 |
2.34e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 62.67 E-value: 2.34e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 440 RALYVKVQKRFLKSLVFYATATLIVFYGLKTAIRNGDWQNEEMLYRSGIKVNPAKAWGNLGNVLKSQSKISEAEIAYRNA 519
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 330340424 520 LYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAVGSRPTLASAYLNTGIILMNQGKTEEARRTFLK 586
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQR 147
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
470-835 |
6.46e-11 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 66.26 E-value: 6.46e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 470 TAIRNGDWQNEEMLYRSGIKVNPAKA--WGNLGNVLKSQSKISEAEIAYRNAL-----YY--RSNMADMLYNLGLLLQEN 540
Cdd:TIGR02917 440 SYLRSGQFDKALAAAKKLEKKQPDNAslHNLLGAIYLGKGDLAKAREAFEKALsiepdFFpaAANLARIDIQEGNPDDAI 519
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 541 SRFAEALHYYKLAVGSRPTLASAYLNTGIILMNQGKTEEARRtflkcseipdenlKDPHAHKSSVtsclyNLGKLYHEQG 620
Cdd:TIGR02917 520 QRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAE-------------LNPQEIEPAL-----ALAQYYLGKG 581
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 621 RYEEALSVYREAIQKMPRqfaPQSLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKFF 700
Cdd:TIGR02917 582 QLKKALAILNEAADAAPD---SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSL 658
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 701 LKAIELDPTKGNCYMHYGQFLLEESRLTEAAEMAKKAAELDSTE-FDVVFNAAHMLRQASLnEAAEKYYDLAARLRPNyP 779
Cdd:TIGR02917 659 KRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAaLGFELEGDLYLRQKDY-PAAIQAYRKALKRAPS-S 736
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 330340424 780 AALMNLGAILHLNGRLQKAEANYLRALQLKPDDVITQSNLRKLWnIMEKQGLKTSK 835
Cdd:TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELY-LAQKDYDKAIK 791
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
714-819 |
1.08e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 60.74 E-value: 1.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 714 YMHYGQFLLEESRLTEAAEMAKKAAELDSTEFDVVFNAAHMLRQaslNEAAEKYYDLAARLRPNYPAALMNLGAILHLNG 793
Cdd:COG5010 26 KYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGD---FEESLALLEQALQLDPNNPELYYNLALLYSRSG 102
|
90 100
....*....|....*....|....*.
gi 330340424 794 RLQKAEANYLRALQLKPDDVITQSNL 819
Cdd:COG5010 103 DKDEAKEYYEKALALSPDNPNAYSNL 128
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
506-813 |
2.27e-10 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 64.33 E-value: 2.27e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 506 QSKISEAEIAYRNALYYRSNMADMLYNLGLLLQENS---------RFAEALHYYKLAVgsRPTLASAYLntgiilmNQGK 576
Cdd:TIGR02917 35 KNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGdyaaaekelRKALSLGYPKNQV--LPLLARAYL-------LQGK 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 577 TEEARRTFLKCSEIPDENLKDPHAHkssvtsclynLGKLYHEQGRYEEALSVYREAIqkmprQFAPQSLYNMMGEAYMRL 656
Cdd:TIGR02917 106 FQQVLDELPGKTLLDDEGAAELLAL----------RGLAYLGLGQLELAQKSYEQAL-----AIDPRSLYAKLGLAQLAL 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 657 S--KLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKFFLKAIELDPTKGNCYMHYGQFLLEESRLTEAAEMA 734
Cdd:TIGR02917 171 AenRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHA 250
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 330340424 735 KKAAELDSTEFDVVFNAAHMLRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDDV 813
Cdd:TIGR02917 251 DALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSH 329
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
502-596 |
3.79e-10 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 57.49 E-value: 3.79e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 502 VLKSQSKISEAEIAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKlAVGSRPTLASAYLNTGIILMNQGKTEEAR 581
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEK-ALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|....*
gi 330340424 582 RTFLKCSEIPDENLK 596
Cdd:COG3063 80 AYLERALELDPSALR 94
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
651-810 |
4.64e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 58.82 E-value: 4.64e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 651 EAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKFFLKAIELDPTKGNCYMHYGQFLLEESRLtea 730
Cdd:COG5010 28 EAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDK--- 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 731 aemakkaaeldstefdvvfnaahmlrqaslnEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKP 810
Cdd:COG5010 105 -------------------------------DEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
686-811 |
6.68e-10 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 56.72 E-value: 6.68e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 686 LLALTGRKSEAEKFFLKAIELDPTKGNCYMHYGQFLLEESRLteaaemakkaaeldstefdvvfnaahmlrqaslnEAAE 765
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRY----------------------------------DEAI 46
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 330340424 766 KyYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPD 811
Cdd:COG3063 47 A-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
512-705 |
1.39e-09 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 59.16 E-value: 1.39e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 512 AEIAYRNALYYRsNMADMLYNLGLLLQENSRFAEALHYYKLAVGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEI- 590
Cdd:COG4785 59 AAERIDRALALP-DLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELd 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 591 PDenlkDPHAHkssvtsclYNLGKLYHEQGRYEEALSVYREAIQKMPrqfapqslynmmgeaymrlsKLPEAEHW-YMES 669
Cdd:COG4785 138 PD----YAYAY--------LNRGIALYYLGRYELAIADLEKALELDP--------------------NDPERALWlYLAE 185
|
170 180 190
....*....|....*....|....*....|....*...
gi 330340424 670 LRSKTDHIPAHLT--YGKLLALTGRKSEAEKFFLKAIE 705
Cdd:COG4785 186 RKLDPEKALALLLedWATAYLLQGDTEEARELFKLALA 223
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
614-708 |
1.73e-09 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 56.15 E-value: 1.73e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 614 KLYHEQGRYEEALSVYREAIQKMPR-QFAPQSLYnMMGEAYMRLSKLPEAEHWYMESLRSKTDHIP---AHLTYGKLLAL 689
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNsPLAPDALY-WLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLE 79
|
90
....*....|....*....
gi 330340424 690 TGRKSEAEKFFLKAIELDP 708
Cdd:COG1729 80 LGDYDKARATLEELIKKYP 98
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
471-560 |
1.79e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 55.56 E-value: 1.79e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 471 AIRNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAeIAYRNALYYRSNMADMLYNLGLLLQENSRFAEALH 548
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPdnADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|..
gi 330340424 549 YYKLAVGSRPTL 560
Cdd:COG3063 81 YLERALELDPSA 92
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
678-822 |
2.21e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 56.35 E-value: 2.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 678 PAHLTYGKLLALTGRKSEAEKFFLKAIELDPTkgncymhygqflleesrlteaaemakkaaeldstEFDVVFNAAHMLRQ 757
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPD----------------------------------NPEAFALLGEILLQ 50
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 330340424 758 ASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDDVITQSNLRKL 822
Cdd:COG4783 51 LGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARA 115
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
755-819 |
2.30e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 55.18 E-value: 2.30e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 330340424 755 LRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEAnYLRALQLKPDDVITQSNL 819
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNL 65
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
569-668 |
3.42e-09 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 55.00 E-value: 3.42e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 569 IILMNQGKTEEARRTFLK-CSEIPDENLKDphahkssvtSCLYNLGKLYHEQGRYEEALSVYREAIQKMPR-QFAPQSLY 646
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAfLKRYPNSPLAP---------DALYWLGEAYYALGDYDEAAEAFEKLLKRYPDsPKAPDALL 71
|
90 100
....*....|....*....|..
gi 330340424 647 nMMGEAYMRLSKLPEAEHWYME 668
Cdd:COG1729 72 -KLGLSYLELGDYDKARATLEE 92
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
560-634 |
3.52e-09 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 53.93 E-value: 3.52e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 330340424 560 LASAYLNTGIILMNQGKTEEARRTFLKCSEIpDENLKDPHAHKSSVTscLYNLGKLYHEQGRYEEALSVYREAIQ 634
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEI-ARRLLGPDHPLTATT--LLNLGRLYLELGRYEEALELLERALA 73
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
609-727 |
4.56e-09 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 56.12 E-value: 4.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 609 LYNLGKLYHEQGRYEEALSVYREAIQKMPRQFAPQSLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLA 688
Cdd:COG5010 20 LRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYS 99
|
90 100 110
....*....|....*....|....*....|....*....
gi 330340424 689 LTGRKSEAEKFFLKAIELDPTKGNCYMHYGQFLLEESRL 727
Cdd:COG5010 100 RSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQD 138
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
470-717 |
9.93e-09 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 58.94 E-value: 9.93e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 470 TAIRNGDWQNEEMLYRSGIKVNPAK--AWGNLGNVLKSQSKISEAEIAYRNALYYRSNMADMLYNLGLLLQENSRFAEAL 547
Cdd:TIGR02917 610 AQLAAGDLNKAVSSFKKLLALQPDSalALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAK 689
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 548 HYYKLAVGSRPTLASAYLNTGIILMNQGKTEEAR---RTFLKCSEIPDENLKDPHAH---------------------KS 603
Cdd:TIGR02917 690 KIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIqayRKALKRAPSSQNAIKLHRALlasgntaeavktleawlkthpND 769
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 604 SVTscLYNLGKLYHEQGRYEEALSVYREAIQKMPRQfaPQSLYNMmgeAYMRL-SKLPEAEHWYMESLRSKtDHIPAHL- 681
Cdd:TIGR02917 770 AVL--RTALAELYLAQKDYDKAIKHYQTVVKKAPDN--AVVLNNL---AWLYLeLKDPRALEYAERALKLA-PNIPAILd 841
|
250 260 270
....*....|....*....|....*....|....*.
gi 330340424 682 TYGKLLALTGRKSEAEKFFLKAIELDPTKGNCYMHY 717
Cdd:TIGR02917 842 TLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHL 877
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
539-637 |
1.24e-08 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 53.46 E-value: 1.24e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 539 ENSRFAEALHYYKLAVGSRPT---LASAYLNTGIILMNQGKTEEARRTFLKCSEIPDENLKDPHAhkssvtscLYNLGKL 615
Cdd:COG1729 5 KAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDA--------LLKLGLS 76
|
90 100
....*....|....*....|..
gi 330340424 616 YHEQGRYEEALSVYREAIQKMP 637
Cdd:COG1729 77 YLELGDYDKARATLEELIKKYP 98
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
652-727 |
2.01e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 52.48 E-value: 2.01e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 330340424 652 AYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKfFLKAIELDPTKGNCYMHYGQFLLEESRL 727
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDY 75
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
439-558 |
3.65e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 53.43 E-value: 3.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 439 ARALYVKVQKRFLKSLVFYATATLIVFYGLKTAIRNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAEIAY 516
Cdd:COG5010 32 AGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPnnPELYYNLALLYSRSGDKDEAKEYY 111
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 330340424 517 RNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAVGSRP 558
Cdd:COG5010 112 EKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
521-675 |
6.88e-08 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 53.14 E-value: 6.88e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 521 YYRSNMAdmlynlgllLQENSRFAEALHYYK--LAVGSRPTLASAYL-NTGIILMNQGKTEEARRTFLKCSEipdENLKD 597
Cdd:PRK02603 38 YYRDGMS---------AQADGEYAEALENYEeaLKLEEDPNDRSYILyNMGIIYASNGEHDKALEYYHQALE---LNPKQ 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 598 PhahkssvtSCLYNLGKLYHEQGRYEEALSVYREAiqkmprqfapQSLYNMMGEAYMRLSKL-P----EAEHWYMESLRS 672
Cdd:PRK02603 106 P--------SALNNIAVIYHKRGEKAEEAGDQDEA----------EALFDKAAEYWKQAIRLaPnnyiEAQNWLKTTGRS 167
|
...
gi 330340424 673 KTD 675
Cdd:PRK02603 168 NID 170
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
752-819 |
7.13e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 51.93 E-value: 7.13e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 330340424 752 AHMLRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDDVITQSNL 819
Cdd:COG4235 24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLL 91
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
611-813 |
1.06e-07 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 53.38 E-value: 1.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 611 NLGKLYHEQGRYEEALSVYREAIQKMPRQFAPQSLYNMMGEAYMRLSKLPEAEHWYMESLR---SKTDHIPAHLTYGKLL 687
Cdd:COG4785 4 LALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDralALPDLAQLYYERGVAY 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 688 ALTGRKSEAEKFFLKAIELDPTKGNCYMHYGqflleesrlteaaemakkaaeldstefdvvfnAAHMLRQAslNEAAEKY 767
Cdd:COG4785 84 DSLGDYDLAIADFDQALELDPDLAEAYNNRG--------------------------------LAYLLLGD--YDAALED 129
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 330340424 768 YDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDDV 813
Cdd:COG4785 130 FDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDP 175
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
749-819 |
2.54e-07 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 52.22 E-value: 2.54e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 330340424 749 FNAAHMLRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDDVITQSNL 819
Cdd:COG4785 77 YERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNR 147
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
746-830 |
3.42e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 50.19 E-value: 3.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 746 DVVFNAAHMLRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDDVITQSNlrkLWNI 825
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLN---LGLA 81
|
....*
gi 330340424 826 MEKQG 830
Cdd:COG4783 82 LLKAG 86
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
545-775 |
7.32e-07 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 52.68 E-value: 7.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 545 EALHYYKLAVGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEIPDENLKdPHAHkssvtsclynLGKLYHEQGRYEE 624
Cdd:TIGR00990 383 KAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIF-SHIQ----------LGVTQYKEGSIAS 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 625 ALSVYREAIQKMPRqfAPQsLYNMMGEAYMRLSKLPEAEHWYMES--LRSKTDHIPAHLT--YGKLLALTGRK---SEAE 697
Cdd:TIGR00990 452 SMATFRRCKKNFPE--APD-VYNYYGELLLDQNKFDEAIEKFDTAieLEKETKPMYMNVLplINKALALFQWKqdfIEAE 528
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 698 KFFLKAIELDPTKGNCYMHYGQFLLEESRLTEAAEMAKKAAELDSTEfdvvfnaAHMLRQASLNEAA-------EKYYDL 770
Cdd:TIGR00990 529 NLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE-------GELVQAISYAEATrtqiqvqEDYPVL 601
|
....*
gi 330340424 771 AARLR 775
Cdd:TIGR00990 602 ASKLQ 606
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
530-706 |
1.81e-06 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 50.70 E-value: 1.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 530 LYNLGLLLQENSRFAEALHYYKLAVGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEIpdenlkDPHAhksSVTSCL 609
Cdd:cd24142 3 LLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIEL------DPDG---GYEKYL 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 610 YnLGKLyhEQGryEEALSVYREAIQKMPRQFAPQS------------LYNMMGEA-------YMR-LSKLPEAE---HWY 666
Cdd:cd24142 74 Y-LGQL--SGG--EEALQYYEKGIEILEEELQALQaasaeaeeeaeeLKRKLSSAlcalaeiYMTdLCDEPDAEqrcEEL 148
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 330340424 667 MES-LRSKTDHIPAHLTYGKLLALTGRKSEAEKFFLKAIEL 706
Cdd:cd24142 149 ITKaLELDPTNPEALQTLASLRISQQRPDEAKEALRRSLEL 189
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
481-700 |
4.94e-06 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 48.72 E-value: 4.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 481 EMLYRSGIKVNPAKAWGNLGNVLKSQSKISEAEIAYRNalyyrsnmADMLYNlglllqensrfaealhyyklavgsRPTL 560
Cdd:COG4700 48 EVLPELRNSRDARRVQRAARNALDPGRELRELEKALEF--------ADTVQN------------------------RVRL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 561 ASAYLntgiilmNQGKTEEARRTFLKCseipdenLKDPHAHKSSVtscLYNLGKLYHEQGRYEEALSvYREAIQKMPRQF 640
Cdd:COG4700 96 ADALL-------ELGRYDEAIELYEEA-------LTGIFADDPHI---LLGLAQALFELGRYAEALE-TLEKLIAKNPDF 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 641 APQSLYNMMGEAYMRLSKLPEAEHWYmESLRSKTDHIPAHLTYGKLLALTGRKSEAEKFF 700
Cdd:COG4700 158 KSSDAHLLYARALEALGDLEAAEAEL-EALARRYSGPEARYRYAKFLARQGRTAEAKELL 216
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
526-590 |
5.41e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 45.07 E-value: 5.41e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 330340424 526 MADMLYNLGLLLQENSRFAEALHYYKLAV--------GSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEI 590
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALeiarrllgPDHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
506-584 |
6.97e-06 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 45.75 E-value: 6.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 506 QSKISEAEIAYRNAL--YYRSNMA-DMLYNLGLLLQENSRFAEALHYYKLAVGSRPT---LASAYLNTGIILMNQGKTEE 579
Cdd:COG1729 6 AGDYDEAIAAFKAFLkrYPNSPLApDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELGDYDK 85
|
....*
gi 330340424 580 ARRTF 584
Cdd:COG1729 86 ARATL 90
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
749-812 |
2.07e-05 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 43.09 E-value: 2.07e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 330340424 749 FNAAHMLRQASLNEAAEKYYDLAARLRPNYP---AALMNLGAILHLNGRLQKAEANYLRALQLKPDD 812
Cdd:pfam13432 1 LALARAALRAGDYDDAAAALEAALARFPESPdaaAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
609-638 |
2.89e-05 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 41.74 E-value: 2.89e-05
10 20 30
....*....|....*....|....*....|
gi 330340424 609 LYNLGKLYHEQGRYEEALSVYREAIQKMPR 638
Cdd:pfam07719 4 LYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
510-634 |
3.22e-05 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 47.93 E-value: 3.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 510 SEAEIAYRNALYYRsnMADMLYNLGLLLQENSRFAEALH------YYKLAVGSRPTLASAYLNTGIILMnqGKTEEARRT 583
Cdd:COG3899 737 PDPEEEYRLALLLE--LAEALYLAGRFEEAEALLERALAaralaaLAALRHGNPPASARAYANLGLLLL--GDYEEAYEF 812
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 330340424 584 FLKCSEIPDEnlkdpHAHKSSVTSCLYNLGKLYHEQGRYEEALSVYREAIQ 634
Cdd:COG3899 813 GELALALAER-----LGDRRLEARALFNLGFILHWLGPLREALELLREALE 858
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
613-656 |
3.69e-05 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 41.69 E-value: 3.69e-05
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 330340424 613 GKLYHEQGRYEEALSVYREAIQKMPRQfaPQSLYNmMGEAYMRL 656
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDN--PEAYYN-LGLAYYKL 41
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
611-811 |
4.39e-05 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 45.79 E-value: 4.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 611 NLGKLYHEQGRYEEALSVYREAIQKMPRQFAPqslYNMMGEAYMRLsklpeaehwymeslrsktdhipahltygkllalt 690
Cdd:TIGR02521 36 QLALGYLEQGDLEVAKENLDKALEHDPDDYLA---YLALALYYQQL---------------------------------- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 691 GRKSEAEKFFLKAIELDPTKGNCYMHYGQFLLEESRLteaaemakkaaeldstefdvvfnaahmlrqaslnEAAEKYYDL 770
Cdd:TIGR02521 79 GELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKY----------------------------------EQAMQQFEQ 124
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 330340424 771 AARLrPNYP---AALMNLGAILHLNGRLQKAEANYLRALQLKPD 811
Cdd:TIGR02521 125 AIED-PLYPqpaRSLENAGLCALKAGDFDKAEKYLTRALQIDPQ 167
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
779-812 |
4.97e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 40.87 E-value: 4.97e-05
10 20 30
....*....|....*....|....*....|....
gi 330340424 779 PAALMNLGAILHLNGRLQKAEANYLRALQLKPDD 812
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
608-637 |
8.63e-05 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 40.12 E-value: 8.63e-05
10 20 30
....*....|....*....|....*....|
gi 330340424 608 CLYNLGKLYHEQGRYEEALSVYREAIQKMP 637
Cdd:smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
608-634 |
1.46e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 39.83 E-value: 1.46e-04
10 20
....*....|....*....|....*..
gi 330340424 608 CLYNLGKLYHEQGRYEEALSVYREAIQ 634
Cdd:pfam13176 1 ALLNLGRIYRKLGDYDEAISLYEQALA 27
|
|
| ycf3 |
CHL00033 |
photosystem I assembly protein Ycf3 |
510-589 |
1.49e-04 |
|
photosystem I assembly protein Ycf3
Pssm-ID: 176974 [Multi-domain] Cd Length: 168 Bit Score: 43.07 E-value: 1.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 510 SEAEIA-----YRNALYYRSNMAD---MLYNLGLLLQENSRFAEALHYYKLAVGSRPTLASAYLNTGII-------LMNQ 574
Cdd:CHL00033 47 SEGEYAealqnYYEAMRLEIDPYDrsyILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVIchyrgeqAIEQ 126
|
90
....*....|....*
gi 330340424 575 GKTEEARRTFLKCSE 589
Cdd:CHL00033 127 GDSEIAEAWFDQAAE 141
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
609-634 |
1.63e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 39.33 E-value: 1.63e-04
10 20
....*....|....*....|....*.
gi 330340424 609 LYNLGKLYHEQGRYEEALSVYREAIQ 634
Cdd:pfam00515 4 LYNLGNAYFKLGKYDEALEYYEKALE 29
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
510-589 |
2.24e-04 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 42.74 E-value: 2.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 510 SEAEIAYRNALYYRSNMAD---MLYNLGLLLQENSRFAEALHYYKLAVGSRPTLASAYLNTGIILMNQGKT-------EE 579
Cdd:PRK02603 52 AEALENYEEALKLEEDPNDrsyILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKaeeagdqDE 131
|
90
....*....|
gi 330340424 580 ARRTFLKCSE 589
Cdd:PRK02603 132 AEALFDKAAE 141
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
750-811 |
2.33e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 40.45 E-value: 2.33e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 750 NAAHMLRQASLNEAAEKYYDLAARL--------RPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPD 811
Cdd:pfam13424 8 NLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| Mgr3-like |
cd24145 |
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; ... |
477-635 |
2.90e-04 |
|
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; Mgr3 (also called mitochondrial genome-required protein 3) is a component of the mitochondrial inner membrane i-AAA protease supercomplex, which degrades misfolded mitochondrial proteins. The supercomplex is composed of Mgr1, Mgr3, and Yme1. Mgr3, together with Mgr1, functions in an adapter complex that targets substrates to the i-AAA protease for degradation.
Pssm-ID: 467945 [Multi-domain] Cd Length: 307 Bit Score: 43.88 E-value: 2.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 477 WQNEEMLYRSGIKVNPaKAWG----NLGNVLKSQSKISEAEIAYRNALYYRSNMADMLYNLG-LLLQENSRFAEALHYYK 551
Cdd:cd24145 128 KAVEILLKLGELWMSP-SEVGafleELATAYDLYGRFCLALPLYMQALSLKGQILLSQANCHsLVLMNNEAAELALHALR 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 552 LAVGSRPTLASAYLNTGiilmNQGKTEEARRTF---LKCSEIPDENLKDPHAHKSSVTScLYNLGKLYHEQGRYEEALSV 628
Cdd:cd24145 207 KPLSSTLIEASRLPQKS----RDQLLEAALKWAqkaLDVAKSIKPKDRDPECDQACALA-LYNLGVIAEMLGNLDEARKL 281
|
....*..
gi 330340424 629 YREAIQK 635
Cdd:cd24145 282 YKEAISL 288
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
605-634 |
4.48e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 38.64 E-value: 4.48e-04
10 20 30
....*....|....*....|....*....|
gi 330340424 605 VTSCLYNLGKLYHEQGRYEEALSVYREAIQ 634
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALA 30
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
779-812 |
4.58e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 38.20 E-value: 4.58e-04
10 20 30
....*....|....*....|....*....|....
gi 330340424 779 PAALMNLGAILHLNGRLQKAEANYLRALQLKPDD 812
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
565-634 |
6.14e-04 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 38.86 E-value: 6.14e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 565 LNTGIILMNQGKTEEARRTFlkcSEIPDENLKDPHAHkssvtSCLYNLGKLYHEQGRYEEALSVYREAIQ 634
Cdd:pfam13432 1 LALARAALRAGDYDDAAAAL---EAALARFPESPDAA-----AALLLLGLAALRQGRLAEAAAAYRAALR 62
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
493-554 |
7.00e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 38.91 E-value: 7.00e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 493 AKAWGNLGNVLKSQSKISEAEIAYRNALY--------YRSNMADMLYNLGLLLQENSRFAEALHYYKLAV 554
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEiarrllgpDHPLTATTLLNLGRLYLELGRYEEALELLERAL 72
|
|
| BamD |
COG4105 |
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ... |
561-661 |
7.03e-04 |
|
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443281 [Multi-domain] Cd Length: 254 Bit Score: 42.18 E-value: 7.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 561 ASAYLNTGIILMNQGKTEEARRTFlkcseipdENLKD-----PHAHKSsvtscLYNLGKLYHEQGRYEEALSVYREAIQK 635
Cdd:COG4105 32 AEELYEEAKEALEKGDYEKAIKLF--------EELEPrypgsPYAEQA-----QLMLAYAYYKQGDYEEAIAAADRFIKL 98
|
90 100
....*....|....*....|....*..
gi 330340424 636 MPR-QFAPQSLYnMMGEAYMRLSKLPE 661
Cdd:COG4105 99 YPNsPNADYAYY-LRGLSYYEQSPDSD 124
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
611-723 |
7.06e-04 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 42.18 E-value: 7.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 611 NLGKLYHEQGRYEEALSVYREAIQKmprqFAPQSLYNMMG--EAYMRLSKLPEAEHwYMESLRSK---TDHIPAHLTYGK 685
Cdd:COG4700 94 RLADALLELGRYDEAIELYEEALTG----IFADDPHILLGlaQALFELGRYAEALE-TLEKLIAKnpdFKSSDAHLLYAR 168
|
90 100 110
....*....|....*....|....*....|....*....
gi 330340424 686 LLALTGRKSEAEKFFLKAIELDPT-KGNCYmhYGQFLLE 723
Cdd:COG4700 169 ALEALGDLEAAEAELEALARRYSGpEARYR--YAKFLAR 205
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
473-625 |
8.14e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 43.15 E-value: 8.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 473 RNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAEIAYRNALYYRSNMADMLYNLGLLLQENSRfAEALHYY 550
Cdd:TIGR02917 748 ASGNTAEAVKTLEAWLKTHPndAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYA 826
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 330340424 551 KLAVGSRPTLAsAYLNT-GIILMNQGKTEEARRTFLKCSEIPDENLkdphahkssvtSCLYNLGKLYHEQGRYEEA 625
Cdd:TIGR02917 827 ERALKLAPNIP-AILDTlGWLLVEKGEADRALPLLRKAVNIAPEAA-----------AIRYHLALALLATGRKAEA 890
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
609-706 |
1.11e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 38.52 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 609 LYNLGKLYHEQGRYEEALSVYREAIQkmprqfapqslynmmgeaymRLSKLPEAEHwymeslrskTDHIPAHLTYGKLLA 688
Cdd:pfam13424 6 LNNLAAVLRRLGRYDEALELLEKALE--------------------IARRLLGPDH---------PLTATTLLNLGRLYL 56
|
90
....*....|....*...
gi 330340424 689 LTGRKSEAEKFFLKAIEL 706
Cdd:pfam13424 57 ELGRYEEALELLERALAL 74
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
779-811 |
1.26e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 37.12 E-value: 1.26e-03
10 20 30
....*....|....*....|....*....|...
gi 330340424 779 PAALMNLGAILHLNGRLQKAEANYLRALQLKPD 811
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| DUF3856 |
pfam12968 |
Domain of Unknown Function (DUF3856); TPR-like protein. The 2hr2 structure belongs to the SCOP ... |
618-706 |
1.46e-03 |
|
Domain of Unknown Function (DUF3856); TPR-like protein. The 2hr2 structure belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family. A DALI search gives hits with the putative peptidyl-prolyl isomerase 2fbn (Z=16), the SGTA protein (Z=16), the PLCR protein 2qfc (Z=16), a putative FK506-binding protein (PDB:1qz2-A; DALI Z-score 15.3; RMSD 2.9; 16% sequence identity within 132 superimposed residues), and with the tetratricopeptide repeats of the protein phosphatase 5 (PDB:2bug; DALI Z-score 15.1; RMSD 2.5; 19% sequence identity within 117 superimposed residues).
Pssm-ID: 463761 [Multi-domain] Cd Length: 142 Bit Score: 39.84 E-value: 1.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 618 EQGRYEEALSVYREAIQkMPRQFAPQSLYNMMG----------EAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKL- 686
Cdd:pfam12968 21 EAAAFEEAAESYRRAME-MSRTIPTEEAFDYDGfdafchaglsEALIGLGRYEEALHSAEKALRYFNRRGELHQDEGKLw 99
|
90 100 110
....*....|....*....|....*....|
gi 330340424 687 --------LAL--TGRKSEAEKFFLKAIEL 706
Cdd:pfam12968 100 iaavfskaRALegLGRKEEAIKYFRMAGEM 129
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
469-554 |
1.48e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 39.20 E-value: 1.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 469 KTAIRNGDWQNEEMLYRSGIKVNP-----AKAWGNLGNVLKSQSKISEAEIAYRNALYYRSN---MADMLYNLGLLLQEN 540
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPnsplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLEL 80
|
90
....*....|....
gi 330340424 541 SRFAEALHYYKLAV 554
Cdd:COG1729 81 GDYDKARATLEELI 94
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
762-812 |
1.49e-03 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 41.46 E-value: 1.49e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 330340424 762 EAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDD 812
Cdd:cd24142 17 ELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDG 67
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
538-811 |
1.94e-03 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 41.05 E-value: 1.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 538 QENSRFAEALHYYKLAVGSRPTLASAYLNTGI-ILMNQGKTEEARRTFlkcSEIPDENLKDPHAhkssvtscLYNLGKLY 616
Cdd:COG3071 61 QALGDYERRDEYLAQALELAPEAELAVLLTRAeLLLDQGQAEQALATL---EALRAGAPRHPQV--------LRLLLQAY 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 617 HEQGRYEEALSVYREAIQKmpRQFAPQSLYNMMGEAYMRL----SKLPEA--EHWymESLRSKTDHIPA-HLTYGKLLAL 689
Cdd:COG3071 130 RQLGDWEELLELLPALRKH--KALSAEEAQALERRAYLGLlrqaARDAEAlkALW--KALPRAERRDPElAAAYARALIA 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 690 TGRKSEAEKFFLKAIELDPTKGNCYmHYGQFLLEE-----SRLTEAAEMAKKAAELDSTefdvvfnAAHMLRQASLNEAA 764
Cdd:COG3071 206 LGDHDEAERLLREALKRQWDPRLVR-LYGRLQGGDpakqlKRAEKWLKKHPNDPDLLLA-------LGRLCLRNQLWGKA 277
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 330340424 765 EKYYDLAARLRPNyPAALMNLGAILHLNGRLQKAEANYLRALQLKPD 811
Cdd:COG3071 278 REYLEAALALRPS-AEAYAELARLLEQLGDPEEAAEHYRKALALALG 323
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
609-634 |
2.09e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 36.22 E-value: 2.09e-03
10 20
....*....|....*....|....*.
gi 330340424 609 LYNLGKLYHEQGRYEEALSVYREAIQ 634
Cdd:pfam13181 4 YYNLGLIYLKLGDYEEAKEYYEKALE 29
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
609-719 |
2.89e-03 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 40.69 E-value: 2.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 609 LYNLGKLYHEQGRYEEALSVYREAIQKMPrqfapqslynmmgeaymrlsklpeaehwymeslrsktDHIPAHLTYGKLLA 688
Cdd:cd24142 3 LLEKAEELLDQGNFELALKFLQRALELEP-------------------------------------NNVEALELLGEILL 45
|
90 100 110
....*....|....*....|....*....|...
gi 330340424 689 LTGRKSEAEKFFLKAIELDPTkGNC--YMHYGQ 719
Cdd:cd24142 46 ELGDVEEAREVLLRAIELDPD-GGYekYLYLGQ 77
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
610-676 |
2.96e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 36.93 E-value: 2.96e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 330340424 610 YNLGKLYHEQGRYEEALSVYREAIQKMPRQ-FAPQSLYNMmGEAYMRLSKLPEAEHWYMESLRSKTDH 676
Cdd:pfam13432 1 LALARAALRAGDYDDAAAALEAALARFPESpDAAAALLLL-GLAALRQGRLAEAAAAYRAALRAAPGD 67
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
762-830 |
3.25e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 38.05 E-value: 3.25e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 330340424 762 EAAEKYYDLAARLRPN---YPAALMNLGAILHLNGRLQKAEANYLRALQLKPDDVITQSNLRKLWNIMEKQG 830
Cdd:COG1729 10 DEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYLELG 81
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
531-586 |
3.47e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 36.93 E-value: 3.47e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 330340424 531 YNLGLLLQENSRFAEALHYYKLAVGSRPTL---ASAYLNTGIILMNQGKTEEARRTFLK 586
Cdd:pfam13432 1 LALARAALRAGDYDDAAAALEAALARFPESpdaAAALLLLGLAALRQGRLAEAAAAYRA 59
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
471-583 |
6.16e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 40.07 E-value: 6.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 471 AIRNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKsQSKISEAEIAYRNALYYRSNMADMLYNLGLLLQENSRFAEALH 548
Cdd:TIGR02917 780 YLAQKDYDKAIKHYQTVVKKAPdnAVVLNNLAWLYL-ELKDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALP 858
|
90 100 110
....*....|....*....|....*....|....*
gi 330340424 549 YYKLAVGSRPTLASAYLNTGIILMNQGKTEEARRT 583
Cdd:TIGR02917 859 LLRKAVNIAPEAAAIRYHLALALLATGRKAEARKE 893
|
|
| ArnT |
COG1807 |
PMT family glycosyltransferase ArnT/Agl22, involved in glycosylation of proteins and lipid IVA ... |
78-198 |
7.48e-03 |
|
PMT family glycosyltransferase ArnT/Agl22, involved in glycosylation of proteins and lipid IVA [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441412 [Multi-domain] Cd Length: 309 Bit Score: 39.22 E-value: 7.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 330340424 78 AIGGLNPWSYHLVNVLLHAAVTGLFTRFSKALLGDGYWtFMAGLMFASHPIHteAVAGIVGRADVGASLFFLLSLLCYTk 157
Cdd:COG1807 77 KLFGVSEFAARLPSALLGLLTVLLVYLLARRLFGRRAA-LLAALLLLTSPLL--LLFGRLATPDALLLLFWTLALYALL- 152
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 330340424 158 hcstRGYSARTWGWFLGTGLCAGCSMLWKEQGVTVLAVSAV 198
Cdd:COG1807 153 ----RALERRRLRWLLLAGLALGLGFLTKGPVALLLPGLAL 189
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
493-520 |
9.96e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 34.32 E-value: 9.96e-03
10 20
....*....|....*....|....*...
gi 330340424 493 AKAWGNLGNVLKSQSKISEAEIAYRNAL 520
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKAL 28
|
|
| |
