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Conserved domains on  [gi|254911011|ref|NP_001157206|]
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ribosomal RNA processing protein 1 homolog B isoform 2 [Mus musculus]

Protein Classification

ribosomal RNA processing 1 family protein( domain architecture ID 10532336)

ribosomal RNA processing 1 family protein similar to Saccharomyces cerevisiae ribosomal RNA-processing protein 1 (RRP1), which is required for 27S rRNA processing, and its homolog, nucleolar protein Nop52

Gene Ontology:  GO:0006364|GO:0005730|GO:0030688
PubMed:  10341208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Nop52 pfam05997
Nucleolar protein,Nop52; Nop52 believed to be involved in the generation of 28S rRNA.
 1-117 1.52e-43

Nucleolar protein,Nop52; Nop52 believed to be involved in the generation of 28S rRNA.


:

Pssm-ID: 461800  Cd Length: 213  Bit Score: 155.06  E-value: 1.52e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254911011    1 MNREWQGIDKLQLDKYYMLIRLVLRQSFEVLKRNAWEESQITLFLDILMKEILSPESQS-PNGVRTHLIDVYLEELTTVG 79
Cdd:pfam05997  89 MSREWDGIDRLRLDKFYLLVRRFLRASFKLLKKNNWDEELVEEFNEVLEETPLSPGDRKvPNGLRYHLIDIFLDELEKVL 168

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 254911011   80 GAELLADQN-------LKLIDPFCRIAAKTKDHTLVQTVARGVFE 117
Cdd:pfam05997 169 AGELEEEEEeddevplLKLLEPFIKLLAKSKDKVLRKKIKEAVFD 213
 
Name Accession Description Interval E-value
Nop52 pfam05997
Nucleolar protein,Nop52; Nop52 believed to be involved in the generation of 28S rRNA.
 1-117 1.52e-43

Nucleolar protein,Nop52; Nop52 believed to be involved in the generation of 28S rRNA.


Pssm-ID: 461800  Cd Length: 213  Bit Score: 155.06  E-value: 1.52e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254911011    1 MNREWQGIDKLQLDKYYMLIRLVLRQSFEVLKRNAWEESQITLFLDILMKEILSPESQS-PNGVRTHLIDVYLEELTTVG 79
Cdd:pfam05997  89 MSREWDGIDRLRLDKFYLLVRRFLRASFKLLKKNNWDEELVEEFNEVLEETPLSPGDRKvPNGLRYHLIDIFLDELEKVL 168

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 254911011   80 GAELLADQN-------LKLIDPFCRIAAKTKDHTLVQTVARGVFE 117
Cdd:pfam05997 169 AGELEEEEEeddevplLKLLEPFIKLLAKSKDKVLRKKIKEAVFD 213
 
Name Accession Description Interval E-value
Nop52 pfam05997
Nucleolar protein,Nop52; Nop52 believed to be involved in the generation of 28S rRNA.
 1-117 1.52e-43

Nucleolar protein,Nop52; Nop52 believed to be involved in the generation of 28S rRNA.


Pssm-ID: 461800  Cd Length: 213  Bit Score: 155.06  E-value: 1.52e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254911011    1 MNREWQGIDKLQLDKYYMLIRLVLRQSFEVLKRNAWEESQITLFLDILMKEILSPESQS-PNGVRTHLIDVYLEELTTVG 79
Cdd:pfam05997  89 MSREWDGIDRLRLDKFYLLVRRFLRASFKLLKKNNWDEELVEEFNEVLEETPLSPGDRKvPNGLRYHLIDIFLDELEKVL 168

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 254911011   80 GAELLADQN-------LKLIDPFCRIAAKTKDHTLVQTVARGVFE 117
Cdd:pfam05997 169 AGELEEEEEeddevplLKLLEPFIKLLAKSKDKVLRKKIKEAVFD 213
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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