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Conserved domains on  [gi|238480184|ref|NP_001154200|]
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Drought-responsive family protein [Arabidopsis thaliana]

Protein Classification

zinc finger and BTB domain-containing protein( domain architecture ID 10528899)

C2H2 zinc finger and BTB (BR-C, ttk and bab)/POZ (Pox virus and Zinc finger) domain-containing protein similar to Drosophila melanogaster protein abrupt (also known as clueless) that may be involved in transcriptional regulation

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
zf-Di19 pfam05605
Drought induced 19 protein (Di19), zinc-binding; This family consists of several drought ...
42-108 3.64e-20

Drought induced 19 protein (Di19), zinc-binding; This family consists of several drought induced 19 (Di19) like proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought. This domain is a zinc-binding domain.


:

Pssm-ID: 428539  Cd Length: 54  Bit Score: 80.42  E-value: 3.64e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 238480184   42 DYPCPFCSDDYDLVELCHHIDEEHQLDANNGflheavsckfrlfiICPVCSRRVKMHMVDHITTQHR 108
Cdd:pfam05605   2 EFTCPFCGEDFDVVSLCEHVEDEHPVESKNV--------------VCPVCAAKVGKDMIGHLTLQHG 54
Di19_C super family cl20571
Stress-induced protein Di19, C-terminal; C-terminal domain of Di19, a protein that increases ...
130-221 4.90e-17

Stress-induced protein Di19, C-terminal; C-terminal domain of Di19, a protein that increases the sensitivity of plants to environmental stress, such as salinity, drought, osmotic stress and cold. the protein is also induced by an increased supply of stress-related hormones such as abscisic acid ABA and ethylene. There is a zinc-finger at the N-terminus, zf-Di19, pfam05605.


The actual alignment was detected with superfamily member pfam14571:

Pssm-ID: 434045  Cd Length: 102  Bit Score: 73.42  E-value: 4.90e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238480184  130 YLQSLIDEPLSTNHTSKSVLDPLLS-FIYNPPSPKKSKLVQPDSSSEASMEDNSlirdSTEKDWES--PSPLSDTELLEK 206
Cdd:pfam14571  12 HLQSLLGGSSNTVSSSNAAPDPLLSsFILNFPTSDEEEDSQPLSSDETSSVKKS----SNEKVWERsvDSSLSDEDQEEK 87
                          90
                  ....*....|....*
gi 238480184  207 AKKREFVQGLISSAI 221
Cdd:pfam14571  88 ARRSEFVQGLLLSTI 102
 
Name Accession Description Interval E-value
zf-Di19 pfam05605
Drought induced 19 protein (Di19), zinc-binding; This family consists of several drought ...
42-108 3.64e-20

Drought induced 19 protein (Di19), zinc-binding; This family consists of several drought induced 19 (Di19) like proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought. This domain is a zinc-binding domain.


Pssm-ID: 428539  Cd Length: 54  Bit Score: 80.42  E-value: 3.64e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 238480184   42 DYPCPFCSDDYDLVELCHHIDEEHQLDANNGflheavsckfrlfiICPVCSRRVKMHMVDHITTQHR 108
Cdd:pfam05605   2 EFTCPFCGEDFDVVSLCEHVEDEHPVESKNV--------------VCPVCAAKVGKDMIGHLTLQHG 54
Di19_C pfam14571
Stress-induced protein Di19, C-terminal; C-terminal domain of Di19, a protein that increases ...
130-221 4.90e-17

Stress-induced protein Di19, C-terminal; C-terminal domain of Di19, a protein that increases the sensitivity of plants to environmental stress, such as salinity, drought, osmotic stress and cold. the protein is also induced by an increased supply of stress-related hormones such as abscisic acid ABA and ethylene. There is a zinc-finger at the N-terminus, zf-Di19, pfam05605.


Pssm-ID: 434045  Cd Length: 102  Bit Score: 73.42  E-value: 4.90e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238480184  130 YLQSLIDEPLSTNHTSKSVLDPLLS-FIYNPPSPKKSKLVQPDSSSEASMEDNSlirdSTEKDWES--PSPLSDTELLEK 206
Cdd:pfam14571  12 HLQSLLGGSSNTVSSSNAAPDPLLSsFILNFPTSDEEEDSQPLSSDETSSVKKS----SNEKVWERsvDSSLSDEDQEEK 87
                          90
                  ....*....|....*
gi 238480184  207 AKKREFVQGLISSAI 221
Cdd:pfam14571  88 ARRSEFVQGLLLSTI 102
 
Name Accession Description Interval E-value
zf-Di19 pfam05605
Drought induced 19 protein (Di19), zinc-binding; This family consists of several drought ...
42-108 3.64e-20

Drought induced 19 protein (Di19), zinc-binding; This family consists of several drought induced 19 (Di19) like proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought. This domain is a zinc-binding domain.


Pssm-ID: 428539  Cd Length: 54  Bit Score: 80.42  E-value: 3.64e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 238480184   42 DYPCPFCSDDYDLVELCHHIDEEHQLDANNGflheavsckfrlfiICPVCSRRVKMHMVDHITTQHR 108
Cdd:pfam05605   2 EFTCPFCGEDFDVVSLCEHVEDEHPVESKNV--------------VCPVCAAKVGKDMIGHLTLQHG 54
Di19_C pfam14571
Stress-induced protein Di19, C-terminal; C-terminal domain of Di19, a protein that increases ...
130-221 4.90e-17

Stress-induced protein Di19, C-terminal; C-terminal domain of Di19, a protein that increases the sensitivity of plants to environmental stress, such as salinity, drought, osmotic stress and cold. the protein is also induced by an increased supply of stress-related hormones such as abscisic acid ABA and ethylene. There is a zinc-finger at the N-terminus, zf-Di19, pfam05605.


Pssm-ID: 434045  Cd Length: 102  Bit Score: 73.42  E-value: 4.90e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238480184  130 YLQSLIDEPLSTNHTSKSVLDPLLS-FIYNPPSPKKSKLVQPDSSSEASMEDNSlirdSTEKDWES--PSPLSDTELLEK 206
Cdd:pfam14571  12 HLQSLLGGSSNTVSSSNAAPDPLLSsFILNFPTSDEEEDSQPLSSDETSSVKKS----SNEKVWERsvDSSLSDEDQEEK 87
                          90
                  ....*....|....*
gi 238480184  207 AKKREFVQGLISSAI 221
Cdd:pfam14571  88 ARRSEFVQGLLLSTI 102
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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