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Conserved domains on  [gi|226246600|ref|NP_001139683|]
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small ribosomal subunit protein uS10m isoform 2 [Mus musculus]

Protein Classification

uS10/mL48 family ribosomal protein( domain architecture ID 10448432)

uS10/mL48 family ribosomal protein similar to fungal mitochondrial 37S ribosomal protein S10, human mitochondrial 39S ribosomal protein L48 and 28S ribosomal protein S10, and archaeal 30S ribosomal protein S10

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_S10 pfam00338
Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes ...
 77-172 2.50e-35

Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.


:

Pssm-ID: 459769  Cd Length: 98  Bit Score: 119.90  E-value: 2.50e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226246600   77 ILVKAHDRAVLDSYEYFAVLAAKELGISIK-VHEPPRKIERFTLLKSVHIFKKHRVQYEMRTLYRCLELKHLTGSTASVY 155
Cdd:pfam00338   2 IKLKSYDHALLDSYAKFIVRAAKRLGIKVSgPIPLPTKRLRVTVLKSPHVHKKSREQFEMRTHKRLIDIKDATPETVDAL 81

                          90
                  ....*....|....*..
gi 226246600  156 LEYIQRNLPEGVAMEVT 172
Cdd:pfam00338  82 LRYLQLNLPEGVDVEVK 98
 
Name Accession Description Interval E-value
Ribosomal_S10 pfam00338
Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes ...
 77-172 2.50e-35

Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.


Pssm-ID: 459769  Cd Length: 98  Bit Score: 119.90  E-value: 2.50e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226246600   77 ILVKAHDRAVLDSYEYFAVLAAKELGISIK-VHEPPRKIERFTLLKSVHIFKKHRVQYEMRTLYRCLELKHLTGSTASVY 155
Cdd:pfam00338   2 IKLKSYDHALLDSYAKFIVRAAKRLGIKVSgPIPLPTKRLRVTVLKSPHVHKKSREQFEMRTHKRLIDIKDATPETVDAL 81

                          90
                  ....*....|....*..
gi 226246600  156 LEYIQRNLPEGVAMEVT 172
Cdd:pfam00338  82 LRYLQLNLPEGVDVEVK 98
rpsJ PRK00596
30S ribosomal protein S10; Reviewed
 74-171 6.13e-12

30S ribosomal protein S10; Reviewed


Pssm-ID: 179076  Cd Length: 102  Bit Score: 59.41  E-value: 6.13e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226246600  74 RLSILVKAHDRAVLDSYEYFAVLAAKELGISIKVHEP-PRKIERFTLLKSVHIFKKHRVQYEMRTLYRCLELKHLTGSTa 152
Cdd:PRK00596   5 KIRIRLKAFDHRLLDQSAKKIVETAKRTGAQVRGPIPlPTKKERFTVLRSPHVNKDSREQFEIRTHKRLIDIVDPTPKT- 83

                         90       100
                 ....*....|....*....|
gi 226246600 153 svyLEYIQR-NLPEGVAMEV 171
Cdd:PRK00596  84 ---VDALMKlDLPAGVDVEI 100
RpsJ COG0051
Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S10 ...
 73-171 3.32e-11

Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S10 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439821  Cd Length: 103  Bit Score: 57.45  E-value: 3.32e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226246600  73 KRLSILVKAHDRAVLDSYEYFAVLAAKELGISIKV-HEPPRKIERFTLLKSVHIFKKHRVQYEMRTLYRCLELKHLTGST 151
Cdd:COG0051    4 QKIRIRLKSYDHRLLDQSVKKIVETAKRTGAKVKGpIPLPTKILRVTVLRSPHVDKDSREQFEMRTHKRLIDIHDPTDKT 83

                         90       100
                 ....*....|....*....|
gi 226246600 152 ASvylEYIQRNLPEGVAMEV 171
Cdd:COG0051   84 IR---ALMRLDLPAGVDIEI 100
 
Name Accession Description Interval E-value
Ribosomal_S10 pfam00338
Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes ...
 77-172 2.50e-35

Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.


Pssm-ID: 459769  Cd Length: 98  Bit Score: 119.90  E-value: 2.50e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226246600   77 ILVKAHDRAVLDSYEYFAVLAAKELGISIK-VHEPPRKIERFTLLKSVHIFKKHRVQYEMRTLYRCLELKHLTGSTASVY 155
Cdd:pfam00338   2 IKLKSYDHALLDSYAKFIVRAAKRLGIKVSgPIPLPTKRLRVTVLKSPHVHKKSREQFEMRTHKRLIDIKDATPETVDAL 81

                          90
                  ....*....|....*..
gi 226246600  156 LEYIQRNLPEGVAMEVT 172
Cdd:pfam00338  82 LRYLQLNLPEGVDVEVK 98
rpsJ PRK00596
30S ribosomal protein S10; Reviewed
 74-171 6.13e-12

30S ribosomal protein S10; Reviewed


Pssm-ID: 179076  Cd Length: 102  Bit Score: 59.41  E-value: 6.13e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226246600  74 RLSILVKAHDRAVLDSYEYFAVLAAKELGISIKVHEP-PRKIERFTLLKSVHIFKKHRVQYEMRTLYRCLELKHLTGSTa 152
Cdd:PRK00596   5 KIRIRLKAFDHRLLDQSAKKIVETAKRTGAQVRGPIPlPTKKERFTVLRSPHVNKDSREQFEIRTHKRLIDIVDPTPKT- 83

                         90       100
                 ....*....|....*....|
gi 226246600 153 svyLEYIQR-NLPEGVAMEV 171
Cdd:PRK00596  84 ---VDALMKlDLPAGVDVEI 100
RpsJ COG0051
Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S10 ...
 73-171 3.32e-11

Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S10 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439821  Cd Length: 103  Bit Score: 57.45  E-value: 3.32e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226246600  73 KRLSILVKAHDRAVLDSYEYFAVLAAKELGISIKV-HEPPRKIERFTLLKSVHIFKKHRVQYEMRTLYRCLELKHLTGST 151
Cdd:COG0051    4 QKIRIRLKSYDHRLLDQSVKKIVETAKRTGAKVKGpIPLPTKILRVTVLRSPHVDKDSREQFEMRTHKRLIDIHDPTDKT 83

                         90       100
                 ....*....|....*....|
gi 226246600 152 ASvylEYIQRNLPEGVAMEV 171
Cdd:COG0051   84 IR---ALMRLDLPAGVDIEI 100
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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