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histone deacetylase complex subunit SAP130 isoform a [Homo sapiens]
Protein Classification
List of domain hits
Name
Accession
Description
Interval
E-value
SAP130_C
pfam16014 Histone deacetylase complex subunit SAP130 C-terminus;
661-1066
0e+00
Histone deacetylase complex subunit SAP130 C-terminus;
Pssm-ID: 464973 [Multi-domain]
Cd Length: 371
Bit Score: 556.47
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 661 A Q GSSPRPSILRKKPAT D G mavrktlippqppdvasprvessmrstsgsprpag AKPK SE IHV SM A T PVTV SM E TVSN QN 740
Cdd:pfam16014 1 A L GSSPRPSILRKKPAT E G ----------------------------------- AKPK PD IHV AV A P PVTV AV E ALPG QN 45
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 741 ND Q P T IAVP P TA Q Q P PPT IPT MI A A A S PPSQP A V A LST I P G A VPI TPPI T --- TIAA APP PSVTVGGSLSSVLGPPV PEI 817
Cdd:pfam16014 46 SE Q Q T ASAS P PS Q H P AQA IPT IL A P A A PPSQP S V V LST L P A A MAV TPPI P asm ANVV APP TQPAASSTAACAVSSVL PEI 125
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 818 K V K E E V EPMD IMR pvs A VPPL ATNTV SP S L AL LANNLS M P TS DL P PGASPRKKPRKQQHVISTEEG D MMETNSTD D EKS T 897
Cdd:pfam16014 126 K I K Q E A EPMD TSQ --- S VPPL TPTSI SP A L TS LANNLS V P AG DL L PGASPRKKPRKQQHVISTEEG E MMETNSTD E EKS A 202
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 898 A K S L LVK AEKRKSPPKEYIDEEGVRYVPVRPRPPITLLRHYRNPWKAAYHHFQRYSDVRVKEEKK AM LQ EI ANQKGV S CR 977
Cdd:pfam16014 203 P K P L TSR AEKRKSPPKEYIDEEGVRYVPVRPRPPITLLRHYRNPWKAAYHHFQRYSDVRVKEEKK GT LQ DM ANQKGV T CR 282
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 978 AQGWK V HLCAAQLLQLTNLEHDVY E RLT N LQEG I IPKKKA A TDDDLHRINELIQGNMQRCKLVMDQI S EARDSM L KVLDH 1057
Cdd:pfam16014 283 AQGWK I HLCAAQLLQLTNLEHDVY S RLT T LQEG L IPKKKA G TDDDLHRINELIQGNMQRCKLVMDQI T EARDSM M KVLDH 362
....*....
gi 225579127 1058 KDRVLKLLN 1066
Cdd:pfam16014 363 KDRVLKLLN 371
PHA03247 super family
cl33720 large tegument protein UL36; Provisional
45-365
2.50e-05
large tegument protein UL36; Provisional
PHA03247 :Pssm-ID: 223021 [Multi-domain]
Cd Length: 3151
Bit Score: 48.78
E-value: 2.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 45 A PS QIANSGSAGLIN P AATVND E SG RD SEVSA R EHMSSSSSLQS R EEKQEPVVV RP YPQVQMLSTHHAVAS A T P VAVTAP 124
Cdd:PHA03247 2628 P PS PSPAANEPDPHP P PTVPPP E RP RD DPAPG R VSRPRRARRLG R AAQASSPPQ RP RRRAARPTVGSLTSL A D P PPPPPT 2707
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 125 P AHLTP A VPLSFSEGLMKPPPKPTM P SR P I APAPP STLS l P P KV PG QVTVTMESSIPQASAI P VATISGQQ G H P SN L HHI 204
Cdd:PHA03247 2708 P EPAPH A LVSATPLPPGPAAARQAS P AL P A APAPP AVPA - G P AT PG GPARPARPPTTAGPPA P APPAAPAA G P P RR L TRP 2786
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 205 MTTNVQM S IIRSNA P GP P LHIG A SH L PR gaaaaavms SSKVTTVLR P TSQ LP NAAT AQP AVQHIIHQ P IQ sr P PVTTSNA 284
Cdd:PHA03247 2787 AVASLSE S RESLPS P WD P ADPP A AV L AP --------- AAALPPAAS P AGP LP PPTS AQP TAPPPPPG P PP -- P SLPLGGS 2855
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 285 IP P AVVATVSATRAQSPVITTTA A HATDSA L S RP TL S IQHPPS A -- AISIQ RP A Q SRDVTTRITL P SH P ALGT P KQQLHT 362
Cdd:PHA03247 2856 VA P GGDVRRRPPSRSPAAKPAAP A RPPVRR L A RP AV S RSTESF A lp PDQPE RP P Q PQAPPPPQPQ P QP P PPPQ P QPPPPP 2935
...
gi 225579127 363 MAQ 365
Cdd:PHA03247 2936 PPR 2938
Atrophin-1 super family
cl38111 Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
466-847
8.32e-05
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
pfam03154 :Pssm-ID: 460830 [Multi-domain]
Cd Length: 991
Bit Score: 46.68
E-value: 8.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 466 P N P VAM E TR SD NRPSVPVQFQYFLPTYPP S AYPLAAHTYT P I T SSVS T IRQY P VSAQA P NSAIT A QTGVGVASTVHLN P M 545
Cdd:pfam03154 149 P S P QDN E SD SD SSAQQQILQTQPPVLQAQ S GAASPPSPPP P G T TQAA T AGPT P SAPSV P PQGSP A TSQPPNQTQSTAA P H 228
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 546 Q L MTVDAS ha R H I Q GI q P A P ISTQGIQPA P IGTPGIQ P A PL GTQGI H SAT P INTQG LQ PA P MGT Q Q P Q P E gktsavvlad 625
Cdd:pfam03154 229 T L IQQTPT -- L H P Q RL - P S P HPPLQPMTQ P PPPSQVS P Q PL PQPSL H GQM P PMPHS LQ TG P SHM Q H P V P P ---------- 295
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 626 g ATIVAN P I S NPFSAA P AATTVVQTH SQ SASTNA P A Q GSSPRPSIL R KK P ATDGMAVRKTLI PP --------------- Q 690
Cdd:pfam03154 296 - QPFPLT P Q S SQSQVP P GPSPAAPGQ SQ QRIHTP P S Q SQLQSQQPP R EQ P LPPAPLSMPHIK PP pttpipqlpnpqshk H 374
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 691 PP DVAS P rve S SMRST S GS P R P AGA KP K S EI --- H VSM A T P VTVSMETV S N Q ---- NNDQ P TIAVPPTAQQ P PPTI P TMI 763
Cdd:pfam03154 375 PP HLSG P --- S PFQMN S NL P P P PAL KP L S SL sth H PPS A H P PPLQLMPQ S Q Q lppp PAQP P VLTQSQSLPP P AASH P PTS 451
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 764 AAASP PSQ PAVAL - STI PG AV P - ITPP ITTIAAAPP ---------- P SV TVG G SLSSVLGP P V P EIKV KEE v EPMDIMR P 831
Cdd:pfam03154 452 GLHQV PSQ SPFPQ h PFV PG GP P p ITPP SGPPTSTSS ampgiqppss A SV SSS G PVPAAVSC P L P PVQI KEE - ALDEAEE P 530
410
....*....|....*.
gi 225579127 832 V S AV PP LATNTVS P SL 847
Cdd:pfam03154 531 E S PP PP PRSPSPE P TV 546
Name
Accession
Description
Interval
E-value
SAP130_C
pfam16014 Histone deacetylase complex subunit SAP130 C-terminus;
661-1066
0e+00
Histone deacetylase complex subunit SAP130 C-terminus;
Pssm-ID: 464973 [Multi-domain]
Cd Length: 371
Bit Score: 556.47
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 661 A Q GSSPRPSILRKKPAT D G mavrktlippqppdvasprvessmrstsgsprpag AKPK SE IHV SM A T PVTV SM E TVSN QN 740
Cdd:pfam16014 1 A L GSSPRPSILRKKPAT E G ----------------------------------- AKPK PD IHV AV A P PVTV AV E ALPG QN 45
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 741 ND Q P T IAVP P TA Q Q P PPT IPT MI A A A S PPSQP A V A LST I P G A VPI TPPI T --- TIAA APP PSVTVGGSLSSVLGPPV PEI 817
Cdd:pfam16014 46 SE Q Q T ASAS P PS Q H P AQA IPT IL A P A A PPSQP S V V LST L P A A MAV TPPI P asm ANVV APP TQPAASSTAACAVSSVL PEI 125
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 818 K V K E E V EPMD IMR pvs A VPPL ATNTV SP S L AL LANNLS M P TS DL P PGASPRKKPRKQQHVISTEEG D MMETNSTD D EKS T 897
Cdd:pfam16014 126 K I K Q E A EPMD TSQ --- S VPPL TPTSI SP A L TS LANNLS V P AG DL L PGASPRKKPRKQQHVISTEEG E MMETNSTD E EKS A 202
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 898 A K S L LVK AEKRKSPPKEYIDEEGVRYVPVRPRPPITLLRHYRNPWKAAYHHFQRYSDVRVKEEKK AM LQ EI ANQKGV S CR 977
Cdd:pfam16014 203 P K P L TSR AEKRKSPPKEYIDEEGVRYVPVRPRPPITLLRHYRNPWKAAYHHFQRYSDVRVKEEKK GT LQ DM ANQKGV T CR 282
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 978 AQGWK V HLCAAQLLQLTNLEHDVY E RLT N LQEG I IPKKKA A TDDDLHRINELIQGNMQRCKLVMDQI S EARDSM L KVLDH 1057
Cdd:pfam16014 283 AQGWK I HLCAAQLLQLTNLEHDVY S RLT T LQEG L IPKKKA G TDDDLHRINELIQGNMQRCKLVMDQI T EARDSM M KVLDH 362
....*....
gi 225579127 1058 KDRVLKLLN 1066
Cdd:pfam16014 363 KDRVLKLLN 371
PHA03247
PHA03247 large tegument protein UL36; Provisional
563-912
3.45e-07
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain]
Cd Length: 3151
Bit Score: 54.94
E-value: 3.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 563 P A P ISTQGIQ PA PIGT P GIQPA P L G T qgihs ATP I -- NTQGLQ P APM G TQQ P Q P ----- E G KTSAVVLADG A TIVANPI S 635
Cdd:PHA03247 2723 P G P AAARQAS PA LPAA P APPAV P A G P ----- ATP G gp ARPARP P TTA G PPA P A P paapa A G PPRRLTRPAV A SLSESRE S 2797
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 636 N P FSAA PA ATTVVQTHSQS A -- STNA PA QGSS P RP S ILRKK P AT dgmavrk TLI PP Q P PDV ---- AS P RVESSM R ST S G S 709
Cdd:PHA03247 2798 L P SPWD PA DPPAAVLAPAA A lp PAAS PA GPLP P PT S AQPTA P PP ------- PPG PP P P SLP lggs VA P GGDVRR R PP S R S 2870
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 710 P RPAG A K P KSEIHVSM A T P VT vsme TV S NQNNDQ P TIAVPPTA Q QPP P TI P TMIAAAS PP S QP AVALSTI P GAV P ITP P I 789
Cdd:PHA03247 2871 P AAKP A A P ARPPVRRL A R P AV ---- SR S TESFAL P PDQPERPP Q PQA P PP P QPQPQPP PP P QP QPPPPPP P RPQ P PLA P T 2946
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 790 T TI A A A PP PS VT V GGSLSSV L G P --- P VP EIK V KEEVEPMDI mr P V S AV PPL a T NTVSPSLALL A NN L SMPTSDL PP GA S 866
Cdd:PHA03247 2947 T DP A G A GE PS GA V PQPWLGA L V P grv A VP RFR V PQPAPSREA -- P A S ST PPL - T GHSLSRVSSW A SS L ALHEETD PP PV S 3023
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 225579127 867 prkkp R KQ QHVIS -- TE EG D MMETNST D D E K S TAKS L LVKAEKRKS P P 912
Cdd:PHA03247 3024 ----- L KQ TLWPP dd TE DS D ADSLFDS D S E R S DLEA L DPLPPEPHD P F 3066
PHA03247
PHA03247 large tegument protein UL36; Provisional
45-365
2.50e-05
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain]
Cd Length: 3151
Bit Score: 48.78
E-value: 2.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 45 A PS QIANSGSAGLIN P AATVND E SG RD SEVSA R EHMSSSSSLQS R EEKQEPVVV RP YPQVQMLSTHHAVAS A T P VAVTAP 124
Cdd:PHA03247 2628 P PS PSPAANEPDPHP P PTVPPP E RP RD DPAPG R VSRPRRARRLG R AAQASSPPQ RP RRRAARPTVGSLTSL A D P PPPPPT 2707
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 125 P AHLTP A VPLSFSEGLMKPPPKPTM P SR P I APAPP STLS l P P KV PG QVTVTMESSIPQASAI P VATISGQQ G H P SN L HHI 204
Cdd:PHA03247 2708 P EPAPH A LVSATPLPPGPAAARQAS P AL P A APAPP AVPA - G P AT PG GPARPARPPTTAGPPA P APPAAPAA G P P RR L TRP 2786
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 205 MTTNVQM S IIRSNA P GP P LHIG A SH L PR gaaaaavms SSKVTTVLR P TSQ LP NAAT AQP AVQHIIHQ P IQ sr P PVTTSNA 284
Cdd:PHA03247 2787 AVASLSE S RESLPS P WD P ADPP A AV L AP --------- AAALPPAAS P AGP LP PPTS AQP TAPPPPPG P PP -- P SLPLGGS 2855
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 285 IP P AVVATVSATRAQSPVITTTA A HATDSA L S RP TL S IQHPPS A -- AISIQ RP A Q SRDVTTRITL P SH P ALGT P KQQLHT 362
Cdd:PHA03247 2856 VA P GGDVRRRPPSRSPAAKPAAP A RPPVRR L A RP AV S RSTESF A lp PDQPE RP P Q PQAPPPPQPQ P QP P PPPQ P QPPPPP 2935
...
gi 225579127 363 MAQ 365
Cdd:PHA03247 2936 PPR 2938
Atrophin-1
pfam03154 Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
466-847
8.32e-05
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain]
Cd Length: 991
Bit Score: 46.68
E-value: 8.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 466 P N P VAM E TR SD NRPSVPVQFQYFLPTYPP S AYPLAAHTYT P I T SSVS T IRQY P VSAQA P NSAIT A QTGVGVASTVHLN P M 545
Cdd:pfam03154 149 P S P QDN E SD SD SSAQQQILQTQPPVLQAQ S GAASPPSPPP P G T TQAA T AGPT P SAPSV P PQGSP A TSQPPNQTQSTAA P H 228
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 546 Q L MTVDAS ha R H I Q GI q P A P ISTQGIQPA P IGTPGIQ P A PL GTQGI H SAT P INTQG LQ PA P MGT Q Q P Q P E gktsavvlad 625
Cdd:pfam03154 229 T L IQQTPT -- L H P Q RL - P S P HPPLQPMTQ P PPPSQVS P Q PL PQPSL H GQM P PMPHS LQ TG P SHM Q H P V P P ---------- 295
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 626 g ATIVAN P I S NPFSAA P AATTVVQTH SQ SASTNA P A Q GSSPRPSIL R KK P ATDGMAVRKTLI PP --------------- Q 690
Cdd:pfam03154 296 - QPFPLT P Q S SQSQVP P GPSPAAPGQ SQ QRIHTP P S Q SQLQSQQPP R EQ P LPPAPLSMPHIK PP pttpipqlpnpqshk H 374
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 691 PP DVAS P rve S SMRST S GS P R P AGA KP K S EI --- H VSM A T P VTVSMETV S N Q ---- NNDQ P TIAVPPTAQQ P PPTI P TMI 763
Cdd:pfam03154 375 PP HLSG P --- S PFQMN S NL P P P PAL KP L S SL sth H PPS A H P PPLQLMPQ S Q Q lppp PAQP P VLTQSQSLPP P AASH P PTS 451
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 764 AAASP PSQ PAVAL - STI PG AV P - ITPP ITTIAAAPP ---------- P SV TVG G SLSSVLGP P V P EIKV KEE v EPMDIMR P 831
Cdd:pfam03154 452 GLHQV PSQ SPFPQ h PFV PG GP P p ITPP SGPPTSTSS ampgiqppss A SV SSS G PVPAAVSC P L P PVQI KEE - ALDEAEE P 530
410
....*....|....*.
gi 225579127 832 V S AV PP LATNTVS P SL 847
Cdd:pfam03154 531 E S PP PP PRSPSPE P TV 546
PRK07764
PRK07764 DNA polymerase III subunits gamma and tau; Validated
276-683
2.48e-03
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain]
Cd Length: 824
Bit Score: 41.90
E-value: 2.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 276 R PPVTTSN A IP PA VV A TVS A TR A QSPV i TTT AA H A TDS A LSRPTLSIQH P PS A AISIQR P AQSRDVTTRITL PS H P ALGT 355
Cdd:PRK07764 383 R RLGVAGG A GA PA AA A PSA A AA A PAAA - PAP AA A A PAA A AAPAPAAAPQ P AP A PAPAPA P PSPAGNAPAGGA PS P P PAAA 461
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 356 P KQ Q LHTMAQKTIFS T GT P VA A ATV AP il A TNTI P S A TT A GSVSHTQAPTS T I ------ VTMT VP SH S SHAT A VTTSNIP 429
Cdd:PRK07764 462 P SA Q PAPAPAAAPEP T AA P AP A PPA AP -- A PAAA P A A PA A PAAPAGADDAA T L rerwpe ILAA VP KR S RKTW A ILLPEAT 539
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 430 V AK V VPQQ -- ITHTSP ---- R I - Q P DYPAE - RSS L IPIS G HRASPNP V AMETRSDNRPSV P VQFQYFL P TYP --- P S A YP 498
Cdd:PRK07764 540 V LG V RGDT lv LGFSTG glar R F a S P GNAEV l VTA L AEEL G GDWQVEA V VGPAPGAAGGEG P PAPASSG P PEE aar P A A PA 619
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 499 LA A HTYT P ITSSVSTIRQYPVS A Q AP NS A ITAQTGVG VA ST vhl NPMQLMTVDASH A RHIQGIQ P A P ISTQGIQP AP I G T 578
Cdd:PRK07764 620 AP A APAA P APAGAAAAPAEASA A P AP GV A APEHHPKH VA VP --- DASDGGDGWPAK A GGAAPAA P P P APAPAAPA AP A G A 696
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 579 PGI QPAP LGTQGIHSATPINTQGLQ P APMGTQQPQPEGKTSA V V L ADGAT iv AN P ISNPFS A A P AATTVVQTHSQS A STN 658
Cdd:PRK07764 697 APA QPAP APAATPPAGQADDPAAQP P QAAQGASAPSPAADDP V P L PPEPD -- DP P DPAGAP A Q P PPPPAPAPAAAP A AAP 774
410 420
....*....|....*....|....*
gi 225579127 659 A P AQG S SPRPSILRKK P AT D GMAV R 683
Cdd:PRK07764 775 P P SPP S EEEEMAEDDA P SM D DEDR R 799
Name
Accession
Description
Interval
E-value
SAP130_C
pfam16014 Histone deacetylase complex subunit SAP130 C-terminus;
661-1066
0e+00
Histone deacetylase complex subunit SAP130 C-terminus;
Pssm-ID: 464973 [Multi-domain]
Cd Length: 371
Bit Score: 556.47
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 661 A Q GSSPRPSILRKKPAT D G mavrktlippqppdvasprvessmrstsgsprpag AKPK SE IHV SM A T PVTV SM E TVSN QN 740
Cdd:pfam16014 1 A L GSSPRPSILRKKPAT E G ----------------------------------- AKPK PD IHV AV A P PVTV AV E ALPG QN 45
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 741 ND Q P T IAVP P TA Q Q P PPT IPT MI A A A S PPSQP A V A LST I P G A VPI TPPI T --- TIAA APP PSVTVGGSLSSVLGPPV PEI 817
Cdd:pfam16014 46 SE Q Q T ASAS P PS Q H P AQA IPT IL A P A A PPSQP S V V LST L P A A MAV TPPI P asm ANVV APP TQPAASSTAACAVSSVL PEI 125
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 818 K V K E E V EPMD IMR pvs A VPPL ATNTV SP S L AL LANNLS M P TS DL P PGASPRKKPRKQQHVISTEEG D MMETNSTD D EKS T 897
Cdd:pfam16014 126 K I K Q E A EPMD TSQ --- S VPPL TPTSI SP A L TS LANNLS V P AG DL L PGASPRKKPRKQQHVISTEEG E MMETNSTD E EKS A 202
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 898 A K S L LVK AEKRKSPPKEYIDEEGVRYVPVRPRPPITLLRHYRNPWKAAYHHFQRYSDVRVKEEKK AM LQ EI ANQKGV S CR 977
Cdd:pfam16014 203 P K P L TSR AEKRKSPPKEYIDEEGVRYVPVRPRPPITLLRHYRNPWKAAYHHFQRYSDVRVKEEKK GT LQ DM ANQKGV T CR 282
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 978 AQGWK V HLCAAQLLQLTNLEHDVY E RLT N LQEG I IPKKKA A TDDDLHRINELIQGNMQRCKLVMDQI S EARDSM L KVLDH 1057
Cdd:pfam16014 283 AQGWK I HLCAAQLLQLTNLEHDVY S RLT T LQEG L IPKKKA G TDDDLHRINELIQGNMQRCKLVMDQI T EARDSM M KVLDH 362
....*....
gi 225579127 1058 KDRVLKLLN 1066
Cdd:pfam16014 363 KDRVLKLLN 371
PHA03247
PHA03247 large tegument protein UL36; Provisional
563-912
3.45e-07
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain]
Cd Length: 3151
Bit Score: 54.94
E-value: 3.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 563 P A P ISTQGIQ PA PIGT P GIQPA P L G T qgihs ATP I -- NTQGLQ P APM G TQQ P Q P ----- E G KTSAVVLADG A TIVANPI S 635
Cdd:PHA03247 2723 P G P AAARQAS PA LPAA P APPAV P A G P ----- ATP G gp ARPARP P TTA G PPA P A P paapa A G PPRRLTRPAV A SLSESRE S 2797
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 636 N P FSAA PA ATTVVQTHSQS A -- STNA PA QGSS P RP S ILRKK P AT dgmavrk TLI PP Q P PDV ---- AS P RVESSM R ST S G S 709
Cdd:PHA03247 2798 L P SPWD PA DPPAAVLAPAA A lp PAAS PA GPLP P PT S AQPTA P PP ------- PPG PP P P SLP lggs VA P GGDVRR R PP S R S 2870
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 710 P RPAG A K P KSEIHVSM A T P VT vsme TV S NQNNDQ P TIAVPPTA Q QPP P TI P TMIAAAS PP S QP AVALSTI P GAV P ITP P I 789
Cdd:PHA03247 2871 P AAKP A A P ARPPVRRL A R P AV ---- SR S TESFAL P PDQPERPP Q PQA P PP P QPQPQPP PP P QP QPPPPPP P RPQ P PLA P T 2946
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 790 T TI A A A PP PS VT V GGSLSSV L G P --- P VP EIK V KEEVEPMDI mr P V S AV PPL a T NTVSPSLALL A NN L SMPTSDL PP GA S 866
Cdd:PHA03247 2947 T DP A G A GE PS GA V PQPWLGA L V P grv A VP RFR V PQPAPSREA -- P A S ST PPL - T GHSLSRVSSW A SS L ALHEETD PP PV S 3023
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 225579127 867 prkkp R KQ QHVIS -- TE EG D MMETNST D D E K S TAKS L LVKAEKRKS P P 912
Cdd:PHA03247 3024 ----- L KQ TLWPP dd TE DS D ADSLFDS D S E R S DLEA L DPLPPEPHD P F 3066
PHA03247
PHA03247 large tegument protein UL36; Provisional
653-871
4.40e-06
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain]
Cd Length: 3151
Bit Score: 51.09
E-value: 4.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 653 QSASTNA P AQGSS P R P SILRKK PA TD --- GMAVRKTLI P PQ P P D VAS P RVE S SM R STSGSP R P A G A KPKSEIHVSM A TPV 729
Cdd:PHA03247 2611 PAPPSPL P PDTHA P D P PPPSPS PA AN epd PHPPPTVPP P ER P R D DPA P GRV S RP R RARRLG R A A Q A SSPPQRPRRR A ARP 2690
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 730 TV SME T VSNQNNDQ P ------------ TIAV PP TAQQPPPTI P TMI AA AS PP SQ PA VALSTIPG A V P IT PP I T TIAA AP - 796
Cdd:PHA03247 2691 TV GSL T SLADPPPP P ptpepaphalvs ATPL PP GPAAARQAS P ALP AA PA PP AV PA GPATPGGP A R P AR PP T T AGPP AP a 2770
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 225579127 797 PP SVTVG G SLSSVLG P P V PEIKVKE E VE P MDIMRPVSAVPP LA TNTVS P SL A LL A NN L SM PTS DL P PGAS P RKK P 871
Cdd:PHA03247 2771 PP AAPAA G PPRRLTR P A V ASLSESR E SL P SPWDPADPPAAV LA PAAAL P PA A SP A GP L PP PTS AQ P TAPP P PPG P 2845
PHA03247
PHA03247 large tegument protein UL36; Provisional
45-365
2.50e-05
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain]
Cd Length: 3151
Bit Score: 48.78
E-value: 2.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 45 A PS QIANSGSAGLIN P AATVND E SG RD SEVSA R EHMSSSSSLQS R EEKQEPVVV RP YPQVQMLSTHHAVAS A T P VAVTAP 124
Cdd:PHA03247 2628 P PS PSPAANEPDPHP P PTVPPP E RP RD DPAPG R VSRPRRARRLG R AAQASSPPQ RP RRRAARPTVGSLTSL A D P PPPPPT 2707
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 125 P AHLTP A VPLSFSEGLMKPPPKPTM P SR P I APAPP STLS l P P KV PG QVTVTMESSIPQASAI P VATISGQQ G H P SN L HHI 204
Cdd:PHA03247 2708 P EPAPH A LVSATPLPPGPAAARQAS P AL P A APAPP AVPA - G P AT PG GPARPARPPTTAGPPA P APPAAPAA G P P RR L TRP 2786
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 205 MTTNVQM S IIRSNA P GP P LHIG A SH L PR gaaaaavms SSKVTTVLR P TSQ LP NAAT AQP AVQHIIHQ P IQ sr P PVTTSNA 284
Cdd:PHA03247 2787 AVASLSE S RESLPS P WD P ADPP A AV L AP --------- AAALPPAAS P AGP LP PPTS AQP TAPPPPPG P PP -- P SLPLGGS 2855
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 285 IP P AVVATVSATRAQSPVITTTA A HATDSA L S RP TL S IQHPPS A -- AISIQ RP A Q SRDVTTRITL P SH P ALGT P KQQLHT 362
Cdd:PHA03247 2856 VA P GGDVRRRPPSRSPAAKPAAP A RPPVRR L A RP AV S RSTESF A lp PDQPE RP P Q PQAPPPPQPQ P QP P PPPQ P QPPPPP 2935
...
gi 225579127 363 MAQ 365
Cdd:PHA03247 2936 PPR 2938
Atrophin-1
pfam03154 Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
466-847
8.32e-05
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain]
Cd Length: 991
Bit Score: 46.68
E-value: 8.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 466 P N P VAM E TR SD NRPSVPVQFQYFLPTYPP S AYPLAAHTYT P I T SSVS T IRQY P VSAQA P NSAIT A QTGVGVASTVHLN P M 545
Cdd:pfam03154 149 P S P QDN E SD SD SSAQQQILQTQPPVLQAQ S GAASPPSPPP P G T TQAA T AGPT P SAPSV P PQGSP A TSQPPNQTQSTAA P H 228
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 546 Q L MTVDAS ha R H I Q GI q P A P ISTQGIQPA P IGTPGIQ P A PL GTQGI H SAT P INTQG LQ PA P MGT Q Q P Q P E gktsavvlad 625
Cdd:pfam03154 229 T L IQQTPT -- L H P Q RL - P S P HPPLQPMTQ P PPPSQVS P Q PL PQPSL H GQM P PMPHS LQ TG P SHM Q H P V P P ---------- 295
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 626 g ATIVAN P I S NPFSAA P AATTVVQTH SQ SASTNA P A Q GSSPRPSIL R KK P ATDGMAVRKTLI PP --------------- Q 690
Cdd:pfam03154 296 - QPFPLT P Q S SQSQVP P GPSPAAPGQ SQ QRIHTP P S Q SQLQSQQPP R EQ P LPPAPLSMPHIK PP pttpipqlpnpqshk H 374
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 691 PP DVAS P rve S SMRST S GS P R P AGA KP K S EI --- H VSM A T P VTVSMETV S N Q ---- NNDQ P TIAVPPTAQQ P PPTI P TMI 763
Cdd:pfam03154 375 PP HLSG P --- S PFQMN S NL P P P PAL KP L S SL sth H PPS A H P PPLQLMPQ S Q Q lppp PAQP P VLTQSQSLPP P AASH P PTS 451
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 764 AAASP PSQ PAVAL - STI PG AV P - ITPP ITTIAAAPP ---------- P SV TVG G SLSSVLGP P V P EIKV KEE v EPMDIMR P 831
Cdd:pfam03154 452 GLHQV PSQ SPFPQ h PFV PG GP P p ITPP SGPPTSTSS ampgiqppss A SV SSS G PVPAAVSC P L P PVQI KEE - ALDEAEE P 530
410
....*....|....*.
gi 225579127 832 V S AV PP LATNTVS P SL 847
Cdd:pfam03154 531 E S PP PP PRSPSPE P TV 546
PHA03247
PHA03247 large tegument protein UL36; Provisional
124-518
1.43e-04
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain]
Cd Length: 3151
Bit Score: 46.08
E-value: 1.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 124 PP AH L T PA --------- VP LSFSEGLMKP P PKPTMPS RP I AP APPSTLSL P PKVP G QVTVTMES S - I P QASAI P VATISG 193
Cdd:PHA03247 2551 PP PP L P PA appaapdrs VP PPRPAPRPSE P AVTSRAR RP D AP PQSARPRA P VDDR G DPRGPAPP S p L P PDTHA P DPPPPS 2630
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 194 QQGHPSNLHHIMTTN V QMSIIRSNA P G P P ------------ LHIG AS HL P RGAAAA A VMSS - SKV T TVLR P TSQL P NAAT 260
Cdd:PHA03247 2631 PSPAANEPDPHPPPT V PPPERPRDD P A P G rvsrprrarrlg RAAQ AS SP P QRPRRR A ARPT v GSL T SLAD P PPPP P TPEP 2710
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 261 A QP A VQHIIHQ P IQSRPPVTT S N A I P P A VVATVSATRAQS P V - ITTT A AHA T DSALSR P TLSIQHPPSAAISIQ RPA QSR 339
Cdd:PHA03247 2711 A PH A LVSATPL P PGPAAARQA S P A L P A A PAPPAVPAGPAT P G g PARP A RPP T TAGPPA P APPAAPAAGPPRRLT RPA VAS 2790
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 340 DVTT R IT LPS ------ H PA LGTPKQQLHTM A QKTIFSTGT P VA A ATV AP ILATNTI P SATTA G SVSHTQAP tsti V TMTV 413
Cdd:PHA03247 2791 LSES R ES LPS pwdpad P PA AVLAPAAALPP A ASPAGPLPP P TS A QPT AP PPPPGPP P PSLPL G GSVAPGGD ---- V RRRP 2866
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 414 PS H S SH A TAVTTSNI PV AKV vpqqithts P R IQPDYPA E RSS L I P ISGH R ASPNPVAMETRSDNR P SV P V Q F Q YFL P TY P 493
Cdd:PHA03247 2867 PS R S PA A KPAAPARP PV RRL --------- A R PAVSRST E SFA L P P DQPE R PPQPQAPPPPQPQPQ P PP P P Q P Q PPP P PP P 2937
410 420
....*....|....*....|....*
gi 225579127 494 PSAY PLA AH T YTPITSSV S TIRQY P 518
Cdd:PHA03247 2938 RPQP PLA PT T DPAGAGEP S GAVPQ P 2962
PRK07764
PRK07764 DNA polymerase III subunits gamma and tau; Validated
276-683
2.48e-03
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain]
Cd Length: 824
Bit Score: 41.90
E-value: 2.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 276 R PPVTTSN A IP PA VV A TVS A TR A QSPV i TTT AA H A TDS A LSRPTLSIQH P PS A AISIQR P AQSRDVTTRITL PS H P ALGT 355
Cdd:PRK07764 383 R RLGVAGG A GA PA AA A PSA A AA A PAAA - PAP AA A A PAA A AAPAPAAAPQ P AP A PAPAPA P PSPAGNAPAGGA PS P P PAAA 461
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 356 P KQ Q LHTMAQKTIFS T GT P VA A ATV AP il A TNTI P S A TT A GSVSHTQAPTS T I ------ VTMT VP SH S SHAT A VTTSNIP 429
Cdd:PRK07764 462 P SA Q PAPAPAAAPEP T AA P AP A PPA AP -- A PAAA P A A PA A PAAPAGADDAA T L rerwpe ILAA VP KR S RKTW A ILLPEAT 539
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 430 V AK V VPQQ -- ITHTSP ---- R I - Q P DYPAE - RSS L IPIS G HRASPNP V AMETRSDNRPSV P VQFQYFL P TYP --- P S A YP 498
Cdd:PRK07764 540 V LG V RGDT lv LGFSTG glar R F a S P GNAEV l VTA L AEEL G GDWQVEA V VGPAPGAAGGEG P PAPASSG P PEE aar P A A PA 619
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 499 LA A HTYT P ITSSVSTIRQYPVS A Q AP NS A ITAQTGVG VA ST vhl NPMQLMTVDASH A RHIQGIQ P A P ISTQGIQP AP I G T 578
Cdd:PRK07764 620 AP A APAA P APAGAAAAPAEASA A P AP GV A APEHHPKH VA VP --- DASDGGDGWPAK A GGAAPAA P P P APAPAAPA AP A G A 696
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 579 PGI QPAP LGTQGIHSATPINTQGLQ P APMGTQQPQPEGKTSA V V L ADGAT iv AN P ISNPFS A A P AATTVVQTHSQS A STN 658
Cdd:PRK07764 697 APA QPAP APAATPPAGQADDPAAQP P QAAQGASAPSPAADDP V P L PPEPD -- DP P DPAGAP A Q P PPPPAPAPAAAP A AAP 774
410 420
....*....|....*....|....*
gi 225579127 659 A P AQG S SPRPSILRKK P AT D GMAV R 683
Cdd:PRK07764 775 P P SPP S EEEEMAEDDA P SM D DEDR R 799
PTZ00449
PTZ00449 104 kDa microneme/rhoptry antigen; Provisional
656-890
3.98e-03
104 kDa microneme/rhoptry antigen; Provisional
Pssm-ID: 185628 [Multi-domain]
Cd Length: 943
Bit Score: 41.21
E-value: 3.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 656 S TNA P AQGS SP RPSI L RKK P ATDGMAVRKT -- LI PP Q P PDVA SP RVESSMRSTSGSPR P AGA KP ------ K SEIHVSMAT 727
Cdd:PTZ00449 602 S AQR P TRPK SP KLPE L LDI P KSPKRPESPK sp KR PP P P QRPS SP ERPEGPKIIKSPKP P KSP KP pfdpkf K EKFYDDYLD 681
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 728 PVTV S M ET VSNQNN D QPTIAVPPTAQQPP P TI P TMIAAAS PP SQ P AVALS tipgav P IT P PITTI A AA P PP svtvggsl S 807
Cdd:PTZ00449 682 AAAK S K ET KTTVVL D ESFESILKETLPET P GT P FTTPRPL PP KL P RDEEF ------ P FE P IGDPD A EQ P DD -------- I 747
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 808 SVLG PP VP E - IKVK E --- EVEPM DI MRPVSAVPPLATN T VS P SL A LLANNLSMPTS D L PPG --- AS P R K KP R KQQHVI ST 880
Cdd:PTZ00449 748 EFFT PP EE E r TFFH E tpa DTPLP DI LAEEFKEEDIHAE T GE P DE A MKRPDSPSEHE D K PPG dhp SL P K K RH R LDGLAL ST 827
250
....*....|
gi 225579127 881 EE gdm M E TNS 890
Cdd:PTZ00449 828 TD --- L E SDA 834
PRK07003
PRK07003 DNA polymerase III subunit gamma/tau;
582-805
7.74e-03
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain]
Cd Length: 830
Bit Score: 40.22
E-value: 7.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 582 Q PA PL G TQGIHSAT P INTQ G LQ PAP mgtqqpqpegkts AVVL A DGATIV A N P ISNPFSA A PA A TTVVQTHSQS A S T N A P A 661
Cdd:PRK07003 359 E PA VT G GGAPGGGV P ARVA G AV PAP ------------- GARA A AAVGAS A V P AVTAVTG A AG A ALAPKAAAAA A A T R A E A 425
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 225579127 662 QGSS P R P silrkk PAT DGMAVRKTLIPPQP P DV A SP R VESSM R STSGSPR P A g A KPK S EIHVSMAT P VTVSM E tvsnqnn 741
Cdd:PRK07003 426 PPAA P A P ------ PAT ADRGDDAADGDAPV P AK A NA R ASADS R CDERDAQ P P - A DSG S ASAPASDA P PDAAF E ------- 491
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 225579127 742 DQ P TI A V P PT A QQPPPTIPTMI AAAS PPSQ PA V A LSTI P G A V P I TP pitti AAA P P PSVTV G GS 805
Cdd:PRK07003 492 PA P RA A A P SA A TPAAVPDARAP AAAS REDA PA A A APPA P E A R P P TP ----- AAA A P AARAG G AA 550
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
