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Conserved domains on  [gi|224451086|ref|NP_001138941|]
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G-protein-signaling modulator 1 isoform b [Rattus norvegicus]

Protein Classification

GoLoco domain-containing protein( domain architecture ID 10490271)

GoLoco domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GoLoco pfam02188
GoLoco motif;
40-60 3.72e-05

GoLoco motif;


:

Pssm-ID: 460481  Cd Length: 22  Bit Score: 38.94  E-value: 3.72e-05
                          10        20
                  ....*....|....*....|.
gi 224451086   40 EEFFDLIASSQSRRLDDQRAS 60
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCS 21
GoLoco pfam02188
GoLoco motif;
122-143 3.92e-05

GoLoco motif;


:

Pssm-ID: 460481  Cd Length: 22  Bit Score: 38.94  E-value: 3.92e-05
                          10        20
                  ....*....|....*....|..
gi 224451086  122 EDFFSLIQRVQAKRMDEQRVDL 143
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCSL 22
GoLoco pfam02188
GoLoco motif;
88-108 4.16e-05

GoLoco motif;


:

Pssm-ID: 460481  Cd Length: 22  Bit Score: 38.56  E-value: 4.16e-05
                          10        20
                  ....*....|....*....|.
gi 224451086   88 DEFFNMLIKYQSSRIDDQRCP 108
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCS 21
 
Name Accession Description Interval E-value
GoLoco pfam02188
GoLoco motif;
40-60 3.72e-05

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 38.94  E-value: 3.72e-05
                          10        20
                  ....*....|....*....|.
gi 224451086   40 EEFFDLIASSQSRRLDDQRAS 60
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCS 21
GoLoco pfam02188
GoLoco motif;
122-143 3.92e-05

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 38.94  E-value: 3.92e-05
                          10        20
                  ....*....|....*....|..
gi 224451086  122 EDFFSLIQRVQAKRMDEQRVDL 143
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCSL 22
GoLoco pfam02188
GoLoco motif;
88-108 4.16e-05

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 38.56  E-value: 4.16e-05
                          10        20
                  ....*....|....*....|.
gi 224451086   88 DEFFNMLIKYQSSRIDDQRCP 108
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCS 21
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 87-109 4.91e-05

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 38.64  E-value: 4.91e-05
                           10        20
                   ....*....|....*....|...
gi 224451086    87 GDEFFNMLIKYQSSRIDDQRCPP 109
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 39-61 9.17e-05

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 37.87  E-value: 9.17e-05
                           10        20
                   ....*....|....*....|...
gi 224451086    39 TEEFFDLIASSQSRRLDDQRASV 61
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 121-143 2.82e-04

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 36.33  E-value: 2.82e-04
                           10        20
                   ....*....|....*....|...
gi 224451086   121 DEDFFSLIQRVQAKRMDEQRVDL 143
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
 
Name Accession Description Interval E-value
GoLoco pfam02188
GoLoco motif;
40-60 3.72e-05

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 38.94  E-value: 3.72e-05
                          10        20
                  ....*....|....*....|.
gi 224451086   40 EEFFDLIASSQSRRLDDQRAS 60
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCS 21
GoLoco pfam02188
GoLoco motif;
122-143 3.92e-05

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 38.94  E-value: 3.92e-05
                          10        20
                  ....*....|....*....|..
gi 224451086  122 EDFFSLIQRVQAKRMDEQRVDL 143
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCSL 22
GoLoco pfam02188
GoLoco motif;
88-108 4.16e-05

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 38.56  E-value: 4.16e-05
                          10        20
                  ....*....|....*....|.
gi 224451086   88 DEFFNMLIKYQSSRIDDQRCP 108
Cdd:pfam02188   1 EDFFDLLARVQSSRLDDQRCS 21
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 87-109 4.91e-05

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 38.64  E-value: 4.91e-05
                           10        20
                   ....*....|....*....|...
gi 224451086    87 GDEFFNMLIKYQSSRIDDQRCPP 109
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 39-61 9.17e-05

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 37.87  E-value: 9.17e-05
                           10        20
                   ....*....|....*....|...
gi 224451086    39 TEEFFDLIASSQSRRLDDQRASV 61
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 121-143 2.82e-04

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 36.33  E-value: 2.82e-04
                           10        20
                   ....*....|....*....|...
gi 224451086   121 DEDFFSLIQRVQAKRMDEQRVDL 143
Cdd:smart00390   1 DEDLFDLLLRMQSSRMDDQRCEL 23
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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