protein C3orf33 homolog [Danio rerio]
List of domain hits
Name | Accession | Description | Interval | E-value | |||
YncB super family | cl43444 | Endonuclease YncB, thermonuclease family [Replication, recombination and repair]; |
114-217 | 9.99e-05 | |||
Endonuclease YncB, thermonuclease family [Replication, recombination and repair]; The actual alignment was detected with superfamily member COG1525: Pssm-ID: 441134 [Multi-domain] Cd Length: 164 Bit Score: 41.59 E-value: 9.99e-05
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PRK14165 super family | cl32962 | winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional |
67-131 | 4.88e-03 | |||
winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional The actual alignment was detected with superfamily member PRK14165: Pssm-ID: 184548 [Multi-domain] Cd Length: 217 Bit Score: 37.35 E-value: 4.88e-03
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Name | Accession | Description | Interval | E-value | |||
YncB | COG1525 | Endonuclease YncB, thermonuclease family [Replication, recombination and repair]; |
114-217 | 9.99e-05 | |||
Endonuclease YncB, thermonuclease family [Replication, recombination and repair]; Pssm-ID: 441134 [Multi-domain] Cd Length: 164 Bit Score: 41.59 E-value: 9.99e-05
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SNc | cd00175 | Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and ... |
167-216 | 1.78e-04 | |||
Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and eukaryotes. They contain no disufide bonds. Pssm-ID: 238102 Cd Length: 129 Bit Score: 40.34 E-value: 1.78e-04
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SNase | pfam00565 | Staphylococcal nuclease homolog; Present in all three domains of cellular life. Four copies in ... |
164-216 | 2.64e-04 | |||
Staphylococcal nuclease homolog; Present in all three domains of cellular life. Four copies in the transcriptional coactivator p100: these, however, appear to lack the active site residues of Staphylococcal nuclease. Positions 14 (Asp-21), 34 (Arg-35), 39 (Asp-40), 42 (Glu-43) and 110 (Arg-87) [SNase numbering in parentheses] are thought to be involved in substrate-binding and catalysis. Pssm-ID: 395448 Cd Length: 106 Bit Score: 39.23 E-value: 2.64e-04
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PRK14165 | PRK14165 | winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional |
67-131 | 4.88e-03 | |||
winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional Pssm-ID: 184548 [Multi-domain] Cd Length: 217 Bit Score: 37.35 E-value: 4.88e-03
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SNc | smart00318 | Staphylococcal nuclease homologues; |
167-216 | 5.38e-03 | |||
Staphylococcal nuclease homologues; Pssm-ID: 214615 Cd Length: 137 Bit Score: 36.09 E-value: 5.38e-03
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Name | Accession | Description | Interval | E-value | |||
YncB | COG1525 | Endonuclease YncB, thermonuclease family [Replication, recombination and repair]; |
114-217 | 9.99e-05 | |||
Endonuclease YncB, thermonuclease family [Replication, recombination and repair]; Pssm-ID: 441134 [Multi-domain] Cd Length: 164 Bit Score: 41.59 E-value: 9.99e-05
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SNc | cd00175 | Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and ... |
167-216 | 1.78e-04 | |||
Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and eukaryotes. They contain no disufide bonds. Pssm-ID: 238102 Cd Length: 129 Bit Score: 40.34 E-value: 1.78e-04
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SNase | pfam00565 | Staphylococcal nuclease homolog; Present in all three domains of cellular life. Four copies in ... |
164-216 | 2.64e-04 | |||
Staphylococcal nuclease homolog; Present in all three domains of cellular life. Four copies in the transcriptional coactivator p100: these, however, appear to lack the active site residues of Staphylococcal nuclease. Positions 14 (Asp-21), 34 (Arg-35), 39 (Asp-40), 42 (Glu-43) and 110 (Arg-87) [SNase numbering in parentheses] are thought to be involved in substrate-binding and catalysis. Pssm-ID: 395448 Cd Length: 106 Bit Score: 39.23 E-value: 2.64e-04
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PRK14165 | PRK14165 | winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional |
67-131 | 4.88e-03 | |||
winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional Pssm-ID: 184548 [Multi-domain] Cd Length: 217 Bit Score: 37.35 E-value: 4.88e-03
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SNc | smart00318 | Staphylococcal nuclease homologues; |
167-216 | 5.38e-03 | |||
Staphylococcal nuclease homologues; Pssm-ID: 214615 Cd Length: 137 Bit Score: 36.09 E-value: 5.38e-03
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Blast search parameters | ||||
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