|
Name |
Accession |
Description |
Interval |
E-value |
| rne |
PRK10811 |
ribonuclease E; Reviewed |
634-751 |
5.02e-07 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 53.50 E-value: 5.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221330874 634 EATDTEAPLEEKASEPVAAASEEVktlVEPVPAASEVSKAEVEPAAASEVSKVDVEPAAAASEEVKAA--VEPKPVASEE 711
Cdd:PRK10811 858 QREAEEVQVQPVVAEVPVAAAVEP---VVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAApvTEQPQVITES 934
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 221330874 712 VKAPAESVPAASEEVKVKVEPEAEKVLADPKPETKVTSET 751
Cdd:PRK10811 935 DVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPE 974
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
634-747 |
1.38e-06 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 51.96 E-value: 1.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221330874 634 EATDTEAPLEEKASEPVAAASEEVktLVEPVPAASEVSKAEVEPAA---ASEVSKVDVEPAAAASEEVKAAVEPKPVASE 710
Cdd:PRK10811 896 EEPVVVAEPQPEEVVVVETTHPEV--IAAPVTEQPQVITESDVAVAqevAEHAEPVVEPQDETADIEEAAETAEVVVAEP 973
|
90 100 110
....*....|....*....|....*....|....*..
gi 221330874 711 EVKAPAESVPAASEEVKVKVEPEAEKVLADPKPETKV 747
Cdd:PRK10811 974 EVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEAT 1010
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
634-750 |
2.31e-06 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 51.19 E-value: 2.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221330874 634 EATDTEAPLEEKASEPVAAASEEVKtlVEPV-------PAASEVSKAEVEPAAASEVSKVDVEPAAAASEEVKAAVEPKP 706
Cdd:PRK10811 871 AEVPVAAAVEPVVSAPVVEAVAEVV--EEPVvvaepqpEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQEVAEHAEP 948
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 221330874 707 VASEEVKAPAESVPAASEEVKVkVEPEAEKVLADPKPETKVTSE 750
Cdd:PRK10811 949 VVEPQDETADIEEAAETAEVVV-AEPEVVAQPAAPVVAEVAAEV 991
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
631-750 |
4.36e-06 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 49.80 E-value: 4.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221330874 631 KKREATDTEAPLEEKASEPVAAASEEV---KTLVEPVPAASEVSKAEVEpAAASEVSKVDVEPAAAASEEVKAAVEPKPV 707
Cdd:PRK09510 118 KQAEEAAKQAALKQKQAEEAAAKAAAAakaKAEAEAKRAAAAAKKAAAE-AKKKAEAEAAKKAAAEAKKKAEAEAAAKAA 196
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 221330874 708 ASEEVKAPAESVPAASEEVKVKVEPEAEKVLADPKPETKVTSE 750
Cdd:PRK09510 197 AEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAE 239
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
643-751 |
1.25e-05 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 48.88 E-value: 1.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221330874 643 EEKASEPVAAASEEVKTL--VEPVPAASEVSKAEVEPAAASEVSKVDVEPAAAASEEVKAA--VEPKPVASEE-----VK 713
Cdd:PRK10811 862 EEVQVQPVVAEVPVAAAVepVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAApvTEQPQVITESdvavaQE 941
|
90 100 110
....*....|....*....|....*....|....*...
gi 221330874 714 APAESVPAASEEVKVKVEPEAEKVLADPKPETKVTSET 751
Cdd:PRK10811 942 VAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQP 979
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
628-750 |
3.68e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.44 E-value: 3.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221330874 628 RLHKKREATDTEAPLEEKASEPVAAASEEVKTLVEPVPAASEVSKAEVEPAAASEVSKVDVEPAAAASEEVKAAVEPKPV 707
Cdd:PTZ00121 1651 ELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKI 1730
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 221330874 708 ASEEVKAPAESVPAASEEVKVKvEPEAEKVLADPKPETKVTSE 750
Cdd:PTZ00121 1731 KAEEAKKEAEEDKKKAEEAKKD-EEEKKKIAHLKKEEEKKAEE 1772
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
631-742 |
7.20e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.67 E-value: 7.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221330874 631 KKREATDTEAPLE--EKASEPVAAASEEVKTLVEPVPA--ASEVSKAEVEPAAASEVSKvdvepaaaaSEEVKAAVEPKP 706
Cdd:PTZ00121 1569 AKKAEEDKNMALRkaEEAKKAEEARIEEVMKLYEEEKKmkAEEAKKAEEAKIKAEELKK---------AEEEKKKVEQLK 1639
|
90 100 110
....*....|....*....|....*....|....*.
gi 221330874 707 VASEEVKAPAESVPAASEEVKVKVEPEAEKVLADPK 742
Cdd:PTZ00121 1640 KKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKK 1675
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
638-746 |
7.44e-05 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 46.19 E-value: 7.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221330874 638 TEAPLEEKASEPVAAASEEVKTLVEP--VPAASEVSkAEVEPAAASEVSKVDVEPAAAASEEVkaAVEPKPVASEEVkaP 715
Cdd:PRK10811 908 EVVVVETTHPEVIAAPVTEQPQVITEsdVAVAQEVA-EHAEPVVEPQDETADIEEAAETAEVV--VAEPEVVAQPAA--P 982
|
90 100 110
....*....|....*....|....*....|.
gi 221330874 716 AESVPAASEEVKVKVEPEAEKVLADPKPETK 746
Cdd:PRK10811 983 VVAEVAAEVETVTAVEPEVAPAQVPEATVEH 1013
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
634-729 |
7.57e-05 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 46.19 E-value: 7.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221330874 634 EATDTE---APLEEKA---SEPVAAASEEVKTLVEPVPAASEVSKAEVEPAAASEVskVDVEPAAAASEEVKAAVEPKPV 707
Cdd:PRK10811 913 ETTHPEviaAPVTEQPqviTESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEV--VVAEPEVVAQPAAPVVAEVAAE 990
|
90 100
....*....|....*....|..
gi 221330874 708 ASEEVKAPAESVPAASEEVKVK 729
Cdd:PRK10811 991 VETVTAVEPEVAPAQVPEATVE 1012
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
631-750 |
8.60e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.29 E-value: 8.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221330874 631 KKREATDTEAPLEEKASEPVAAASEEVKtlvepVPAASEVSKAEVEPAAASEVSKVDVEPAAAA------SEEVKAAVEP 704
Cdd:PTZ00121 1633 KKVEQLKKKEAEEKKKAEELKKAEEENK-----IKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAealkkeAEEAKKAEEL 1707
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 221330874 705 KPVASEEVKApAESVPAASEEVKVKVEPEAEKVLADPKP--ETKVTSE 750
Cdd:PTZ00121 1708 KKKEAEEKKK-AEELKKAEEENKIKAEEAKKEAEEDKKKaeEAKKDEE 1754
|
|
| tolA_full |
TIGR02794 |
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ... |
632-746 |
1.76e-04 |
|
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]
Pssm-ID: 274303 [Multi-domain] Cd Length: 346 Bit Score: 44.45 E-value: 1.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221330874 632 KREATDTEAPLEEKASEP---VAAASEEVKTLVEPVPAASEVSKAEVEPAAASEVSKVDVEPAAAASEEVKAAVEpkpvA 708
Cdd:TIGR02794 63 AKKEQERQKKLEQQAEEAekqRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAE----A 138
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 221330874 709 SEEVKAPAESVPAASEEVKVKVEPEAEK----VLADPKPETK 746
Cdd:TIGR02794 139 EAERKAKEEAAKQAEEEAKAKAAAEAKKkaeeAKKKAEAEAK 180
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
638-743 |
1.83e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 44.71 E-value: 1.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221330874 638 TEAPLEEKASEPVAAASEEVKTLVEPVPAASEVSKAEVEPAAASEVSKVDVEPAAAASEEVKAAVEPKPVaseevkAPAE 717
Cdd:PRK14951 378 KKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVAL------APAP 451
|
90 100
....*....|....*....|....*.
gi 221330874 718 SVPAASEEVKVKVEPEAEKVLADPKP 743
Cdd:PRK14951 452 PAQAAPETVAIPVRVAPEPAVASAAP 477
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
646-749 |
1.83e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 44.71 E-value: 1.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221330874 646 ASEPVAAASEEVKTLVEPV---PAASEVSKAEVEPAAASEVSKVDVEPAAAAseevkAAVEPKPVASEEVKAPA---ESV 719
Cdd:PRK14951 367 AAAAEAAAPAEKKTPARPEaaaPAAAPVAQAAAAPAPAAAPAAAASAPAAPP-----AAAPPAPVAAPAAAAPAaapAAA 441
|
90 100 110
....*....|....*....|....*....|...
gi 221330874 720 PAASEEVKVKVEPEAEKVLADPK---PETKVTS 749
Cdd:PRK14951 442 PAAVALAPAPPAQAAPETVAIPVrvaPEPAVAS 474
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
631-736 |
3.07e-04 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 43.64 E-value: 3.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221330874 631 KKREATDTEAPLEEKASEPVAAASEE---VKTLVEPVPAASEVSKAEVEPAAASEVSKvDVEPAAAASEEVKAAVEPKPV 707
Cdd:PRK09510 140 KAAAAAKAKAEAEAKRAAAAAKKAAAeakKKAEAEAAKKAAAEAKKKAEAEAAAKAAA-EAKKKAEAEAKKKAAAEAKKK 218
|
90 100
....*....|....*....|....*....
gi 221330874 708 ASEEVKAPAEsvpAASEEVKVKVEPEAEK 736
Cdd:PRK09510 219 AAAEAKAAAA---KAAAEAKAAAEKAAAA 244
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
635-748 |
3.47e-04 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 44.26 E-value: 3.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221330874 635 ATDTEAPLEEKASEPVAAASEEVKTLVEPVPAASEVSKAEVEPAAAsevskVDVEPAAAASEEVKAAVEPKPVASEEVKA 714
Cdd:PRK10811 848 VRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAE-----VVEEPVVVAEPQPEEVVVVETTHPEVIAA 922
|
90 100 110
....*....|....*....|....*....|....*...
gi 221330874 715 PAESVPAASEE----VKVKVEPEAEKVLADPKPETKVT 748
Cdd:PRK10811 923 PVTEQPQVITEsdvaVAQEVAEHAEPVVEPQDETADIE 960
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
629-740 |
4.16e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.98 E-value: 4.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221330874 629 LHKKREATDTEAPLEEKASEPVAAAsEEVKTLVEPVPAASEVSKAEVEPAA-ASEVSKVDVEPAAAASEEVKAAVEPKPV 707
Cdd:PTZ00121 1307 AKKKAEEAKKADEAKKKAEEAKKKA-DAAKKKAEEAKKAAEAAKAEAEAAAdEAEAAEEKAEAAEKKKEEAKKKADAAKK 1385
|
90 100 110
....*....|....*....|....*....|....*..
gi 221330874 708 ASEEVKApAESVPAASEEVKVKVE----PEAEKVLAD 740
Cdd:PTZ00121 1386 KAEEKKK-ADEAKKKAEEDKKKADelkkAAAAKKKAD 1421
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
634-744 |
4.23e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 43.70 E-value: 4.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221330874 634 EATDTEAPLEEKASEPVAAASEEVKTLVEPVPAASEVSKAEVEPAAASevskvDVEPAAAASEEVkAAVEPKPVASEEVK 713
Cdd:PRK07994 400 PPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAAS-----RARPVNSALERL-ASVRPAPSALEKAP 473
|
90 100 110
....*....|....*....|....*....|....*...
gi 221330874 714 APAE-----SVPAASEEVKVKVEPEAEK--VLADPKPE 744
Cdd:PRK07994 474 AKKEayrwkATNPVEVKKEPVATPKALKkaLEHEKTPE 511
|
|
| PTZ00436 |
PTZ00436 |
60S ribosomal protein L19-like protein; Provisional |
645-732 |
4.27e-04 |
|
60S ribosomal protein L19-like protein; Provisional
Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 43.40 E-value: 4.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221330874 645 KASEPVAAASEEVKTLVEPVPAASEVSKAEVEPA-AASEVSKVDVEPAAAASEEVKAAVEPKPVASEEVKAPAESVPAAS 723
Cdd:PTZ00436 218 KAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAkAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAA 297
|
....*....
gi 221330874 724 EEVKVKVEP 732
Cdd:PTZ00436 298 APAKAAAAP 306
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
631-750 |
5.46e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.59 E-value: 5.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221330874 631 KKREATDTEAPLEEKASEPVAAASEEVKTLVEPVPAASEVSK-AEVEPAAASEVSKVDVEPAAA-----ASEEVKAAVEP 704
Cdd:PTZ00121 1357 DEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKkAEEDKKKADELKKAAAAKKKAdeakkKAEEKKKADEA 1436
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 221330874 705 KPVASE-----EVKAPAESVPAAsEEVKVKVEPEAEKVLADPKPETKVTSE 750
Cdd:PTZ00121 1437 KKKAEEakkadEAKKKAEEAKKA-EEAKKKAEEAKKADEAKKKAEEAKKAD 1486
|
|
| PRK13108 |
PRK13108 |
prolipoprotein diacylglyceryl transferase; Reviewed |
639-751 |
7.21e-04 |
|
prolipoprotein diacylglyceryl transferase; Reviewed
Pssm-ID: 237284 [Multi-domain] Cd Length: 460 Bit Score: 42.66 E-value: 7.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221330874 639 EAPLEEKASEPVAAASEEVKTLVEPVPAASEVSKAEVEPAAASEVSKVDVEPAAAASEEVKAAVEPKPVASEEVKAP--A 716
Cdd:PRK13108 322 EPNQPDDVAEAVKAEVAEVTDEVAAESVVQVADRDGESTPAVEETSEADIEREQPGDLAGQAPAAHQVDAEAASAAPeeP 401
|
90 100 110
....*....|....*....|....*....|....*.
gi 221330874 717 ESVPAASEEVKVKVEPEAEKVLADP-KPETKVTSET 751
Cdd:PRK13108 402 AALASEAHDETEPEVPEKAAPIPDPaKPDELAVAGP 437
|
|
| PTZ00436 |
PTZ00436 |
60S ribosomal protein L19-like protein; Provisional |
638-732 |
8.14e-04 |
|
60S ribosomal protein L19-like protein; Provisional
Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 42.24 E-value: 8.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221330874 638 TEAPLEEKASEPVAAASEEVKTLVEPVPAASEVSKAEVEPA-AASEVSKVDVEPAAAASEEVKAAVEPKPVASEEVKAPA 716
Cdd:PTZ00436 232 AAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAkAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAA 311
|
90
....*....|....*.
gi 221330874 717 ESVPAASEEVKVKVEP 732
Cdd:PTZ00436 312 APAKAAAPPAKAAAPP 327
|
|
| PTZ00436 |
PTZ00436 |
60S ribosomal protein L19-like protein; Provisional |
640-736 |
1.18e-03 |
|
60S ribosomal protein L19-like protein; Provisional
Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 41.86 E-value: 1.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221330874 640 APLEEKASEPVAAASEEVKTLVEPVPAASEVSKAEVEPA-AASEVSKVDVEPAAAASEEVKAAVEPKPVASEEVKAPAES 718
Cdd:PTZ00436 255 APPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAkAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPP 334
|
90
....*....|....*...
gi 221330874 719 VPAASEEVKVKVEPEAEK 736
Cdd:PTZ00436 335 AKAAAPPAKAAAAPVGKK 352
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
631-736 |
1.23e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.44 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221330874 631 KKREATDTEAPLEEKASEPVAAASEEVKTLVEPVPAASEVSKAEVEPAAASEVSKVDVEPAAAASEEVKAAVEPKPVASE 710
Cdd:PTZ00121 1613 KKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAE 1692
|
90 100
....*....|....*....|....*.
gi 221330874 711 EVKAPAESVPAAsEEVKVKVEPEAEK 736
Cdd:PTZ00121 1693 ALKKEAEEAKKA-EELKKKEAEEKKK 1717
|
|
| PTZ00436 |
PTZ00436 |
60S ribosomal protein L19-like protein; Provisional |
640-732 |
1.32e-03 |
|
60S ribosomal protein L19-like protein; Provisional
Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 41.86 E-value: 1.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221330874 640 APLEEKASEPVAAASEEVKTLVEPVPAASEVSKAEVEPA-AASEVSKVDVEPAAAASEEVKAAVEPKPVASEEVKAPAES 718
Cdd:PTZ00436 248 AAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAkAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPP 327
|
90
....*....|....
gi 221330874 719 VPAASEEVKVKVEP 732
Cdd:PTZ00436 328 AKAATPPAKAAAPP 341
|
|
| PTZ00436 |
PTZ00436 |
60S ribosomal protein L19-like protein; Provisional |
640-732 |
1.96e-03 |
|
60S ribosomal protein L19-like protein; Provisional
Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 41.09 E-value: 1.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221330874 640 APLEEKASEPVAAASEEVKTLVEPVPAASEVSKAEVEPA-AASEVSKVDVEPAAAASEEVKAAVEPKPVASEEVKAPAES 718
Cdd:PTZ00436 241 AAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAkAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPP 320
|
90
....*....|....
gi 221330874 719 VPAASEEVKVKVEP 732
Cdd:PTZ00436 321 AKAAAPPAKAATPP 334
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
628-736 |
2.08e-03 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 41.33 E-value: 2.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221330874 628 RLHKKREATDTEaplEEKASEPVAAASEEVKTLVEPVPAASEVSKAEVEPAAAsevskvdVEPAAAASEE----VKAAVE 703
Cdd:PRK09510 105 QLEKERLAAQEQ---KKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAK-------RAAAAAKKAAaeakKKAEAE 174
|
90 100 110
....*....|....*....|....*....|....*
gi 221330874 704 PKPVASEEVKAPAESVPA--ASEEVKVKVEPEAEK 736
Cdd:PRK09510 175 AAKKAAAEAKKKAEAEAAakAAAEAKKKAEAEAKK 209
|
|
| PRK12373 |
PRK12373 |
NADH-quinone oxidoreductase subunit E; |
564-745 |
3.77e-03 |
|
NADH-quinone oxidoreductase subunit E;
Pssm-ID: 237082 [Multi-domain] Cd Length: 400 Bit Score: 40.56 E-value: 3.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221330874 564 PVVILPQEYYSNCEENSINQLtnIDSFPLGVQPGVSFSLHSVLTGSAPKDQcmcPCSCTQNLPnrlhkkREATDTEAPLE 643
Cdd:PRK12373 145 PMVQIGKDYYEDLTPERLEEI--IDAFAAGKGPVVKPGPQIGRYASEPAGG---LTSLTEEAG------KARYNASKALA 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221330874 644 EKASEPVAAA-SEEVKTLVEPVPAASEVSKAE--------VEPAAASEVSKVdvEPAAAASEevKAAVEPKPVASEEVKA 714
Cdd:PRK12373 214 EDIGDTVKRIdGTEVPLLAPWQGDAAPVPPSEaarpksadAETNAALKTPAT--APKAAAKN--AKAPEAQPVSGTAAAE 289
|
170 180 190
....*....|....*....|....*....|..
gi 221330874 715 PAESVPAASEEVKVK-VEPEAEKVLADPKPET 745
Cdd:PRK12373 290 PAPKEAAKAAAAAAKpALEDKPRPLGIARPGG 321
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
650-752 |
4.77e-03 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 40.41 E-value: 4.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221330874 650 VAAASEEV---KTLVE-PVPAASEVSKAEVEPAAASEVSKVDVEPAAAASEEvkaAVEPKPVASEEVKAPAESVPAASEE 725
Cdd:PRK10811 829 VACASPEMasgKVWIRyPVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVE---PVVSAPVVEAVAEVVEEPVVVAEPQ 905
|
90 100 110
....*....|....*....|....*....|
gi 221330874 726 VK--VKVEPEAEKVLADPKPE-TKVTSETN 752
Cdd:PRK10811 906 PEevVVVETTHPEVIAAPVTEqPQVITESD 935
|
|
| tolA_full |
TIGR02794 |
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ... |
626-736 |
5.86e-03 |
|
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]
Pssm-ID: 274303 [Multi-domain] Cd Length: 346 Bit Score: 39.44 E-value: 5.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221330874 626 PNRLhkKREATDTEAPLEEKASEPVAAASEEVKTlvepvPAASEVSKAEVEPAAASEVSKVDVEPAA-AASEEVKAAVEP 704
Cdd:TIGR02794 52 ANRI--QQQKKPAAKKEQERQKKLEQQAEEAEKQ-----RAAEQARQKELEQRAAAEKAAKQAEQAAkQAEEKQKQAEEA 124
|
90 100 110
....*....|....*....|....*....|....
gi 221330874 705 KPVASEEVKAPAESV--PAASEEVKVKVEPEAEK 736
Cdd:TIGR02794 125 KAKQAAEAKAKAEAEaeRKAKEEAAKQAEEEAKA 158
|
|
| flhF |
PRK06995 |
flagellar biosynthesis protein FlhF; |
648-743 |
7.07e-03 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 39.56 E-value: 7.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221330874 648 EPVAAASEEVKTLVEPVPAASEVSKAEVEPAAAsevskVDVEPAAAASEEVKAAVEPKPVASEEVKAPAESVPAASEEVK 727
Cdd:PRK06995 39 EIVALADSDLAALAPPAAAAPAAAQPPPAAAPA-----AVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPEA 113
|
90
....*....|....*.
gi 221330874 728 VKVEPEAEKVLADPKP 743
Cdd:PRK06995 114 QAPAAPAERAAAENAA 129
|
|
| L12 |
TIGR00855 |
ribosomal protein L7/L12; Ribosomal proteins L7 and L12 are synonymous except for ... |
634-731 |
8.08e-03 |
|
ribosomal protein L7/L12; Ribosomal proteins L7 and L12 are synonymous except for post-translational modification of the N-terminal amino acid. THis model resembles pfam00542 but matches the full length of prokaryotic and organellar proteins rather than just the C-terminus. [Protein synthesis, Ribosomal proteins: synthesis and modification]
Pssm-ID: 273301 [Multi-domain] Cd Length: 123 Bit Score: 37.05 E-value: 8.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221330874 634 EATDTEAPLEEK----ASEPVAAASEEVKTLVEPVPAASEVSkAEVEPAAAS--EVSKVDVEPAAAASEEVKAAVE--PK 705
Cdd:TIGR00855 17 ELSELVKALEEKfgvsAAAPVAAGAAGAAAGAAAAEEKTEFD-VILKGAGDNkiAVIKVVREITGLGLKEAKDLVEgaPK 95
|
90 100
....*....|....*....|....*.
gi 221330874 706 PVASEEVKAPAESVPAASEEVKVKVE 731
Cdd:TIGR00855 96 ALKEGVSKEEAEELKKKLEEAGAKVE 121
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
633-722 |
9.91e-03 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 39.25 E-value: 9.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221330874 633 REATDTEAPLEEKASEPVAAASEEVKTLVEPVPAASE-------VSKAEVEPAAASEVSKVD--VEPAAAASEEVKAAVE 703
Cdd:PRK10811 932 TESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVvvaepevVAQPAAPVVAEVAAEVETvtAVEPEVAPAQVPEATV 1011
|
90 100
....*....|....*....|.
gi 221330874 704 PKPVASEEV-KAPA-ESVPAA 722
Cdd:PRK10811 1012 EHNHATAPMtRAPApEYVPEA 1032
|
|
|