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Conserved domains on  [gi|193207385|ref|NP_001122867|]
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Mitochondrial genome maintenance exonuclease 1 [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RecB super family cl43326
3#-5# helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V) [Replication, ...
 126-212 1.59e-05

3#-5# helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];


The actual alignment was detected with superfamily member COG1074:

Pssm-ID: 440692 [Multi-domain]  Cd Length: 866  Bit Score: 46.11  E-value: 1.59e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193207385 126 AAIRNFMKSamPVILEIQDPQNAICEKKVRHPTLAY------QGRFDAVVKYKDYWNILDWKT---TPARSSFSTQReds 196
Cdd:COG1074  756 EALLAFLAT--PLLAELFAAAEVLREVPFLLPDLYRglggllKGRIDLVFEDDGRVYIVDYKTnrlGPDDEEYLPER--- 830

                         90
                 ....*....|....*.
gi 193207385 197 lsytsYVRQLAAYASA 212
Cdd:COG1074  831 -----YRLQLALYALA 841
 
Name Accession Description Interval E-value
RecB COG1074
3#-5# helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V) [Replication, ...
 126-212 1.59e-05

3#-5# helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];


Pssm-ID: 440692 [Multi-domain]  Cd Length: 866  Bit Score: 46.11  E-value: 1.59e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193207385 126 AAIRNFMKSamPVILEIQDPQNAICEKKVRHPTLAY------QGRFDAVVKYKDYWNILDWKT---TPARSSFSTQReds 196
Cdd:COG1074  756 EALLAFLAT--PLLAELFAAAEVLREVPFLLPDLYRglggllKGRIDLVFEDDGRVYIVDYKTnrlGPDDEEYLPER--- 830

                         90
                 ....*....|....*.
gi 193207385 197 lsytsYVRQLAAYASA 212
Cdd:COG1074  831 -----YRLQLALYALA 841
 
Name Accession Description Interval E-value
RecB COG1074
3#-5# helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V) [Replication, ...
 126-212 1.59e-05

3#-5# helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];


Pssm-ID: 440692 [Multi-domain]  Cd Length: 866  Bit Score: 46.11  E-value: 1.59e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193207385 126 AAIRNFMKSamPVILEIQDPQNAICEKKVRHPTLAY------QGRFDAVVKYKDYWNILDWKT---TPARSSFSTQReds 196
Cdd:COG1074  756 EALLAFLAT--PLLAELFAAAEVLREVPFLLPDLYRglggllKGRIDLVFEDDGRVYIVDYKTnrlGPDDEEYLPER--- 830

                         90
                 ....*....|....*.
gi 193207385 197 lsytsYVRQLAAYASA 212
Cdd:COG1074  831 -----YRLQLALYALA 841
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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