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Conserved domains on  [gi|157821221|ref|NP_001102113|]
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transmembrane protein 72 [Rattus norvegicus]

Protein Classification

TMEM72 domain-containing protein( domain architecture ID 11240573)

TMEM72 domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
TMEM72 pfam16054
Transmembrane protein family 72; This family of proteins is functionally uncharacterized. This ...
2-140 2.47e-59

Transmembrane protein family 72; This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 145 and 275 amino acids in length.


:

Pssm-ID: 435102  Cd Length: 154  Bit Score: 185.67  E-value: 2.47e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157821221    2 KLQVFWTGLEYTCRLLGITTAAVLIGVGTETFLRGRfKSLAFYLLFTGVTISVCEGTYFVAQLLAICFKCQPGSLAHRAK 81
Cdd:pfam16054   1 KRSAFWNLLEHVCRILGISTAIVLIGVGVELALQGE-KSLAVYLLASGIAVSFLETSWFVTLLLDVCLRCEEGSMIFNCW 79
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 157821221   82 EKAHWLGCFQKFLAYMLLSVACFLHPVLVWHVTIPGSMLIITGLAYFLLSKRKKKKAAP 140
Cdd:pfam16054  80 KFVRWLGGFKKFLLYTVLSVACFLHPVLVWHVTIPGTMLVILGFLYFILSFRKKVSTGP 138
 
Name Accession Description Interval E-value
TMEM72 pfam16054
Transmembrane protein family 72; This family of proteins is functionally uncharacterized. This ...
2-140 2.47e-59

Transmembrane protein family 72; This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 145 and 275 amino acids in length.


Pssm-ID: 435102  Cd Length: 154  Bit Score: 185.67  E-value: 2.47e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157821221    2 KLQVFWTGLEYTCRLLGITTAAVLIGVGTETFLRGRfKSLAFYLLFTGVTISVCEGTYFVAQLLAICFKCQPGSLAHRAK 81
Cdd:pfam16054   1 KRSAFWNLLEHVCRILGISTAIVLIGVGVELALQGE-KSLAVYLLASGIAVSFLETSWFVTLLLDVCLRCEEGSMIFNCW 79
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 157821221   82 EKAHWLGCFQKFLAYMLLSVACFLHPVLVWHVTIPGSMLIITGLAYFLLSKRKKKKAAP 140
Cdd:pfam16054  80 KFVRWLGGFKKFLLYTVLSVACFLHPVLVWHVTIPGTMLVILGFLYFILSFRKKVSTGP 138
 
Name Accession Description Interval E-value
TMEM72 pfam16054
Transmembrane protein family 72; This family of proteins is functionally uncharacterized. This ...
2-140 2.47e-59

Transmembrane protein family 72; This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 145 and 275 amino acids in length.


Pssm-ID: 435102  Cd Length: 154  Bit Score: 185.67  E-value: 2.47e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157821221    2 KLQVFWTGLEYTCRLLGITTAAVLIGVGTETFLRGRfKSLAFYLLFTGVTISVCEGTYFVAQLLAICFKCQPGSLAHRAK 81
Cdd:pfam16054   1 KRSAFWNLLEHVCRILGISTAIVLIGVGVELALQGE-KSLAVYLLASGIAVSFLETSWFVTLLLDVCLRCEEGSMIFNCW 79
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 157821221   82 EKAHWLGCFQKFLAYMLLSVACFLHPVLVWHVTIPGSMLIITGLAYFLLSKRKKKKAAP 140
Cdd:pfam16054  80 KFVRWLGGFKKFLLYTVLSVACFLHPVLVWHVTIPGTMLVILGFLYFILSFRKKVSTGP 138
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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