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Conserved domains on  [gi|194440691|ref|NP_001101456|]
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serine/arginine repetitive matrix protein 1 [Rattus norvegicus]

Protein Classification

PWI domain-containing protein( domain architecture ID 10478549)

PWI domain-containing protein may function as a splicing factor; similar to Homo sapiens serine/arginine repetitive matrix protein 1 that is involved in numerous pre-mRNA processing events

CATH:  1.20.1390.10
Gene Ontology:  GO:0006397|GO:0003676
PubMed:  10322432|12600940
SCOP:  4000671

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PWI pfam01480
PWI domain;
46-115 3.81e-38

PWI domain;


:

Pssm-ID: 460224 [Multi-domain]  Cd Length: 71  Bit Score: 136.48  E-value: 3.81e-38
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691   46 EVIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNgKNAREFMGELWPLLLSAQEN 115
Cdd:pfam01480   1 EVLKPWIEKKITEILGFEDDVVVEYVVNLLEEKFPDPKELQIQLTGFLD-KDAAKFVKELWKLLLSAQES 69
PHA03307 super family cl33723
transcriptional regulator ICP4; Provisional
 610-806 9.78e-08

transcriptional regulator ICP4; Provisional


The actual alignment was detected with superfamily member PHA03307:

Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 56.33  E-value: 9.78e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  610 PSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPS 689
Cdd:PHA03307  115 DPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPP 194

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  690 PRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEpkkikkAASPSPQSVRRVSSSRSVSGSPEPTAKKPPA 769
Cdd:PHA03307  195 PSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSS------DSSSSESSGCGWGPENECPLPRPAPITLPTR 268

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 194440691  770 PPSPVQSQSPSTNWSPAAPAKKAKSPTPSPSPARNSD 806
Cdd:PHA03307  269 IWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGS 305
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 389-809 2.62e-06

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.48  E-value: 2.62e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  389 SASPPRRRHRPSSPATPPPKTRHSPTPQQSNRARKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKG 468
Cdd:PHA03247 2567 SVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTV 2646

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  469 SKMAAADSVQQRRQYRRQNQQSSSDSGSSSTSEDERPKRSHVKNGeVGRRRRHSPSRSASPSPRKRQKETSPRSRRRRSP 548
Cdd:PHA03247 2647 PPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPT-VGSLTSLADPPPPPPTPEPAPHALVSATPLPPGP 2725

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  549 SPPPARRRRSPSPAPPPPPPPPPRRRRsptppprrrtpsppprrrspsprrysppiqrrySPSPPPKRRTASPPPPPKRR 628
Cdd:PHA03247 2726 AAARQASPALPAAPAPPAVPAGPATPG---------------------------------GPARPARPPTTAGPPAPAPP 2772

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  629 ASPSPPPKRRVShSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRST-REARSPQPNKRHSPSPRPRAPQTSSPPP----- 702
Cdd:PHA03247 2773 AAPAAGPPRRLT-RPAVASLSESRESLPSPWDPADPPAAVLAPAAAlPPAASPAGPLPPPTSAQPTAPPPPPGPPppslp 2851

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  703 -----------VRRGASASPqgrqSPSPSTRPIRRVSRTPEPKKIKKAAS-PSPQSVRRVSSSRSVSGSPEPTAKKPPAP 770
Cdd:PHA03247 2852 lggsvapggdvRRRPPSRSP----AAKPAAPARPPVRRLARPAVSRSTESfALPPDQPERPPQPQAPPPPQPQPQPPPPP 2927

                         410       420       430
                  ....*....|....*....|....*....|....*....
gi 194440691  771 PSPVQSQSPSTNWSPAAPAKKAkSPTPSPSPARNSDQEG 809
Cdd:PHA03247 2928 QPQPPPPPPPRPQPPLAPTTDP-AGAGEPSGAVPQPWLG 2965
 
Name Accession Description Interval E-value
PWI pfam01480
PWI domain;
46-115 3.81e-38

PWI domain;


Pssm-ID: 460224 [Multi-domain]  Cd Length: 71  Bit Score: 136.48  E-value: 3.81e-38
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691   46 EVIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNgKNAREFMGELWPLLLSAQEN 115
Cdd:pfam01480   1 EVLKPWIEKKITEILGFEDDVVVEYVVNLLEEKFPDPKELQIQLTGFLD-KDAAKFVKELWKLLLSAQES 69
PWI smart00311
PWI, domain in splicing factors;
40-115 1.96e-28

PWI, domain in splicing factors;


Pssm-ID: 214609 [Multi-domain]  Cd Length: 74  Bit Score: 108.97  E-value: 1.96e-28
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 194440691    40 MSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLEV-KNPDSKMMQINLTGFLngkNAREFMGELWPLLLSAQEN 115
Cdd:smart00311   1 LSKLKLDEIKPWITKKVIEFLGFEEDTLVEFILSQIRQhKGPQAKLLQINLTGFE---DAEEFVDKLWRLLIFELKN 74
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 610-806 9.78e-08

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 56.33  E-value: 9.78e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  610 PSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPS 689
Cdd:PHA03307  115 DPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPP 194

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  690 PRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEpkkikkAASPSPQSVRRVSSSRSVSGSPEPTAKKPPA 769
Cdd:PHA03307  195 PSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSS------DSSSSESSGCGWGPENECPLPRPAPITLPTR 268

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 194440691  770 PPSPVQSQSPSTNWSPAAPAKKAKSPTPSPSPARNSD 806
Cdd:PHA03307  269 IWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGS 305
PHA03247 PHA03247
large tegument protein UL36; Provisional
 389-809 2.62e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.48  E-value: 2.62e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  389 SASPPRRRHRPSSPATPPPKTRHSPTPQQSNRARKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKG 468
Cdd:PHA03247 2567 SVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTV 2646

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  469 SKMAAADSVQQRRQYRRQNQQSSSDSGSSSTSEDERPKRSHVKNGeVGRRRRHSPSRSASPSPRKRQKETSPRSRRRRSP 548
Cdd:PHA03247 2647 PPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPT-VGSLTSLADPPPPPPTPEPAPHALVSATPLPPGP 2725

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  549 SPPPARRRRSPSPAPPPPPPPPPRRRRsptppprrrtpsppprrrspsprrysppiqrrySPSPPPKRRTASPPPPPKRR 628
Cdd:PHA03247 2726 AAARQASPALPAAPAPPAVPAGPATPG---------------------------------GPARPARPPTTAGPPAPAPP 2772

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  629 ASPSPPPKRRVShSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRST-REARSPQPNKRHSPSPRPRAPQTSSPPP----- 702
Cdd:PHA03247 2773 AAPAAGPPRRLT-RPAVASLSESRESLPSPWDPADPPAAVLAPAAAlPPAASPAGPLPPPTSAQPTAPPPPPGPPppslp 2851

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  703 -----------VRRGASASPqgrqSPSPSTRPIRRVSRTPEPKKIKKAAS-PSPQSVRRVSSSRSVSGSPEPTAKKPPAP 770
Cdd:PHA03247 2852 lggsvapggdvRRRPPSRSP----AAKPAAPARPPVRRLARPAVSRSTESfALPPDQPERPPQPQAPPPPQPQPQPPPPP 2927

                         410       420       430
                  ....*....|....*....|....*....|....*....
gi 194440691  771 PSPVQSQSPSTNWSPAAPAKKAkSPTPSPSPARNSDQEG 809
Cdd:PHA03247 2928 QPQPPPPPPPRPQPPLAPTTDP-AGAGEPSGAVPQPWLG 2965
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
612-745 1.03e-03

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 42.34  E-value: 1.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  612 PPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSPR 691
Cdd:pfam05539 168 PKTAVTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTSSNPEPQTEPPPSQRGPSGSP 247

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 194440691  692 PRAPQTSSPPPVRRGASA--SPQGRQSPSPS-TRPIRRVSRTPEPKKIKKAASPSPQ 745
Cdd:pfam05539 248 QHPPSTTSQDQSTTGDGQehTQRRKTPPATSnRRSPHSTATPPPTTKRQETGRPTPR 304
 
Name Accession Description Interval E-value
PWI pfam01480
PWI domain;
46-115 3.81e-38

PWI domain;


Pssm-ID: 460224 [Multi-domain]  Cd Length: 71  Bit Score: 136.48  E-value: 3.81e-38
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691   46 EVIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNgKNAREFMGELWPLLLSAQEN 115
Cdd:pfam01480   1 EVLKPWIEKKITEILGFEDDVVVEYVVNLLEEKFPDPKELQIQLTGFLD-KDAAKFVKELWKLLLSAQES 69
PWI smart00311
PWI, domain in splicing factors;
40-115 1.96e-28

PWI, domain in splicing factors;


Pssm-ID: 214609 [Multi-domain]  Cd Length: 74  Bit Score: 108.97  E-value: 1.96e-28
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 194440691    40 MSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLEV-KNPDSKMMQINLTGFLngkNAREFMGELWPLLLSAQEN 115
Cdd:smart00311   1 LSKLKLDEIKPWITKKVIEFLGFEEDTLVEFILSQIRQhKGPQAKLLQINLTGFE---DAEEFVDKLWRLLIFELKN 74
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 610-806 9.78e-08

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 56.33  E-value: 9.78e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  610 PSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPS 689
Cdd:PHA03307  115 DPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPP 194

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  690 PRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEpkkikkAASPSPQSVRRVSSSRSVSGSPEPTAKKPPA 769
Cdd:PHA03307  195 PSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSS------DSSSSESSGCGWGPENECPLPRPAPITLPTR 268

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 194440691  770 PPSPVQSQSPSTNWSPAAPAKKAKSPTPSPSPARNSD 806
Cdd:PHA03307  269 IWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGS 305
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
610-805 2.82e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 54.50  E-value: 2.82e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691 610 PSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPP---PKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRH 686
Cdd:PRK12323 385 PAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVaaaPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARP 464

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691 687 SPSPRPRAPQTSSPPPVRRGASASPqgrqSPSPSTRPirrvsrtPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPTAKK 766
Cdd:PRK12323 465 AAAGPRPVAAAAAAAPARAAPAAAP----APADDDPP-------PWEELPPEFASPAPAQPDAAPAGWVAESIPDPATAD 533

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 194440691 767 PPAPPSpvqSQSPSTNWSPAAPAKKAKSPTPSPSPARNS 805
Cdd:PRK12323 534 PDDAFE---TLAPAPAAAPAPRAAAATEPVVAPRPPRAS 569
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 607-802 4.54e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 53.84  E-value: 4.54e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691 607 RYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRH 686
Cdd:PRK07764 585 EAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASD 664

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691 687 SPSPRPR----APQTSSPPPVRRGASASPQGRQSPSPSTRPirRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEP 762
Cdd:PRK07764 665 GGDGWPAkaggAAPAAPPPAPAPAAPAAPAGAAPAQPAPAP--AATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLP 742

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 194440691 763 TAKKPPAPPSPVQSQSPSTNWSPAAPAKKAKSPTPSPSPA 802
Cdd:PRK07764 743 PEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEE 782
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 398-743 9.03e-07

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 52.87  E-value: 9.03e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  398 RPSSPATPPPKtrhSPTPQQSNRARKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGSKMAAADSV 477
Cdd:PHA03307   64 RFEPPTGPPPG---PGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRP 140

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  478 QQRRQYRRQNQQSSSDSGSSSTSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRKRQKETSPRSRRRRSPSPPPARRRR 557
Cdd:PHA03307  141 VGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSP 220

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  558 SPSPAPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKR 637
Cdd:PHA03307  221 APAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSP 300

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  638 RVSHSPPPKQRSPPVTKR-RSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSPRPRAPQTSSPPPvRRGASASPQGRQS 716
Cdd:PHA03307  301 SSPGSGPAPSSPRASSSSsSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPR-KRPRPSRAPSSPA 379

                         330       340
                  ....*....|....*....|....*..
gi 194440691  717 PSPSTRPIRRVSRTPEPKKIKKAASPS 743
Cdd:PHA03307  380 ASAGRPTRRRARAAVAGRARRRDATGR 406
PHA03247 PHA03247
large tegument protein UL36; Provisional
 565-802 1.51e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 52.25  E-value: 1.51e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  565 PPPPPPPRRRRSPT---PPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSH 641
Cdd:PHA03247 2566 RSVPPPRPAPRPSEpavTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPT 2645

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  642 SPPPKQRSppvtKRRSPSLSSKHRKGSSPGRSTREARSPQpnkrhspSPRPRApqtsSPPPVRRGASASPQGRQSPSPST 721
Cdd:PHA03247 2646 VPPPERPR----DDPAPGRVSRPRRARRLGRAAQASSPPQ-------RPRRRA----ARPTVGSLTSLADPPPPPPTPEP 2710

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  722 RPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPTAKKPPAPPspvqsQSPSTNWSPAAPAKKAKSPTPSPSP 801
Cdd:PHA03247 2711 APHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARP-----PTTAGPPAPAPPAAPAAGPPRRLTR 2785


                  .
gi 194440691  802 A 802
Cdd:PHA03247 2786 P 2786
PHA03247 PHA03247
large tegument protein UL36; Provisional
 389-809 2.62e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.48  E-value: 2.62e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  389 SASPPRRRHRPSSPATPPPKTRHSPTPQQSNRARKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKG 468
Cdd:PHA03247 2567 SVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTV 2646

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  469 SKMAAADSVQQRRQYRRQNQQSSSDSGSSSTSEDERPKRSHVKNGeVGRRRRHSPSRSASPSPRKRQKETSPRSRRRRSP 548
Cdd:PHA03247 2647 PPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPT-VGSLTSLADPPPPPPTPEPAPHALVSATPLPPGP 2725

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  549 SPPPARRRRSPSPAPPPPPPPPPRRRRsptppprrrtpsppprrrspsprrysppiqrrySPSPPPKRRTASPPPPPKRR 628
Cdd:PHA03247 2726 AAARQASPALPAAPAPPAVPAGPATPG---------------------------------GPARPARPPTTAGPPAPAPP 2772

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  629 ASPSPPPKRRVShSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRST-REARSPQPNKRHSPSPRPRAPQTSSPPP----- 702
Cdd:PHA03247 2773 AAPAAGPPRRLT-RPAVASLSESRESLPSPWDPADPPAAVLAPAAAlPPAASPAGPLPPPTSAQPTAPPPPPGPPppslp 2851

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  703 -----------VRRGASASPqgrqSPSPSTRPIRRVSRTPEPKKIKKAAS-PSPQSVRRVSSSRSVSGSPEPTAKKPPAP 770
Cdd:PHA03247 2852 lggsvapggdvRRRPPSRSP----AAKPAAPARPPVRRLARPAVSRSTESfALPPDQPERPPQPQAPPPPQPQPQPPPPP 2927

                         410       420       430
                  ....*....|....*....|....*....|....*....
gi 194440691  771 PSPVQSQSPSTNWSPAAPAKKAkSPTPSPSPARNSDQEG 809
Cdd:PHA03247 2928 QPQPPPPPPPRPQPPLAPTTDP-AGAGEPSGAVPQPWLG 2965
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 572-805 1.12e-05

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 49.40  E-value: 1.12e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  572 RRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPP 651
Cdd:PHA03307  146 PPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPG 225

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  652 VTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSPRPRAPQTSS---PPPVRRGASASPQGRQSPSPSTRPIRRVS 728
Cdd:PHA03307  226 RSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASgwnGPSSRPGPASSSSSPRERSPSPSPSSPGS 305

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 194440691  729 RTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPTAKKPPAPPSPVQSQSPSTNWSPAAPAKKAKSPTPSPSPARNS 805
Cdd:PHA03307  306 GPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASA 382
PHA03247 PHA03247
large tegument protein UL36; Provisional
 377-733 4.12e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 47.63  E-value: 4.12e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  377 SSPPRKTRRLSPSAspPRRRHRPSSPATPPPKTRHSPTPQQSNRarksrvsvSPGRTSGKVTKHKGTEKRESPSPAPKPR 456
Cdd:PHA03247 2590 DAPPQSARPRAPVD--DRGDPRGPAPPSPLPPDTHAPDPPPPSP--------SPAANEPDPHPPPTVPPPERPRDDPAPG 2659

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  457 KVELSESEEDKG------------SKMAAADSVQQRRQYRRQNQQSSSDSGSSSTSEDERPKRSHVKNGEVGRRRRHSPS 524
Cdd:PHA03247 2660 RVSRPRRARRLGraaqassppqrpRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAP 2739

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  525 RSASPSPRKRQ--KETSPRSRRRRSPSPPPARRRRSPSPAPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSP 602
Cdd:PHA03247 2740 APPAVPAGPATpgGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALP 2819

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  603 PIQRRYSPSPPPKRRTASPPPPPKRRASPSPP------PKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRkgSSPGRSTRE 676
Cdd:PHA03247 2820 PAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPlggsvaPGGDVRRRPPSRSPAAKPAAPARPPVRRLAR--PAVSRSTES 2897

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 194440691  677 ARSPQPNKRHSPSPR-PRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEP 733
Cdd:PHA03247 2898 FALPPDQPERPPQPQaPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEP 2955
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 667-891 6.20e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 46.90  E-value: 6.20e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691 667 GSSPGRSTREARSPQPNKRHSPSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIrrvsrTPEPKKIKKAASPSPQS 746
Cdd:PRK07764 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGV-----AAPEHHPKHVAVPDASD 664

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691 747 VRRVSSSRSVSGSPEPTAKKPPAPPSPVQSQSPSTNWSPAAPAKKAKSPTPSPSPARNSDQEGGGKKKKKKKDKKHKKDK 826
Cdd:PRK07764 665 GGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPE 744

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 194440691 827 KHKKHKKHKKEKAVAVATPAPAAPAAVSAAATPSAQEEPA----AAPEPRKETESEAEDDNLDDLERHL 891
Cdd:PRK07764 745 PDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEmaedDAPSMDDEDRRDAEEVAMELLEEEL 813
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 378-712 2.43e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 45.16  E-value: 2.43e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  378 SPPRKTRRLSPSASPPRRRHRPSSPATPPPktrhSPTPQQSNRARKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRK 457
Cdd:PHA03307   99 SPAREGSPTPPGPSSPDPPPPTPPPASPPP----SPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAAL 174

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  458 VELSESEEDKGSKMAAADSVQQRRQYRRQNQQSSSDSGSSSTSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRKRQKE 537
Cdd:PHA03307  175 PLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENE 254

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  538 TSPRSRRRRSPSPPPARRRRSPSPAPPPPPPPPPRRRRSPTPPPRrrtpsppprRRSPSPRRYSPPIQRRYSPSPP---- 613
Cdd:PHA03307  255 CPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPS---------PSSPGSGPAPSSPRASSSSSSSress 325

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  614 --------PKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPSLSskhrKGSSPGRSTREARSPQPNKR 685
Cdd:PHA03307  326 ssstssssESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAAS----AGRPTRRRARAAVAGRARRR 401

                         330       340
                  ....*....|....*....|....*..
gi 194440691  686 HSPSPRPRAPQTSSPPPVRRGASASPQ 712
Cdd:PHA03307  402 DATGRFPAGRPRPSPLDAGAASGAFYA 428
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
609-710 3.43e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 44.48  E-value: 3.43e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691 609 SPSPPPKRRTASPPPPPKRRASPSPPPKR-------RVSHSPPPKQRSPPVTKRRSP----------SLSSKHRKGSSPG 671
Cdd:PRK12323 455 AAAPAAAARPAAAGPRPVAAAAAAAPARAapaaapaPADDDPPPWEELPPEFASPAPaqpdaapagwVAESIPDPATADP 534

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 194440691 672 RSTREARSPQPNKrhSPSPRPRAPQTSSPPPVRRGASAS 710
Cdd:PRK12323 535 DDAFETLAPAPAA--APAPRAAAATEPVVAPRPPRASAS 571
PHA03247 PHA03247
large tegument protein UL36; Provisional
 378-726 3.64e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.54  E-value: 3.64e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  378 SPPRKTRRLSPSA---SPPRRRHRPSSPATPPPKT---RHSPTPQQSNRARKSRVSVSPGRTSGKVTKHKGTEKRESPSP 451
Cdd:PHA03247 2662 SRPRRARRLGRAAqasSPPQRPRRRAARPTVGSLTslaDPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAP 2741

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  452 APKPRKVELSESEEDKGSKMAAADSVQQRRQYRRQNQQSSSDSGSSSTSEDErpkrshvkngevgRRRRHSPSRSASPSP 531
Cdd:PHA03247 2742 PAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSE-------------SRESLPSPWDPADPP 2808

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  532 RKRQKETSPRSRRRRSPSPPPARRRRSPSPAPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPS 611
Cdd:PHA03247 2809 AAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLAR 2888

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  612 PPPKRRTAS---PPPPPKRRASPSPPPkrrvshsPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRhSP 688
Cdd:PHA03247 2889 PAVSRSTESfalPPDQPERPPQPQAPP-------PPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGA-VP 2960

                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 194440691  689 SPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRR 726
Cdd:PHA03247 2961 QPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTG 2998
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 607-732 5.36e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 43.55  E-value: 5.36e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691 607 RYSPSPPPKRRTASPPPPPKRRASPSPPPKR---RVSHSPPPKQRSPPVTkrrSPSLSSKHRKGSSPGRSTREARSPQPN 683
Cdd:PRK14951 367 AAAAEAAAPAEKKTPARPEAAAPAAAPVAQAaaaPAPAAAPAAAASAPAA---PPAAAPPAPVAAPAAAAPAAAPAAAPA 443

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 194440691 684 KRH-SPSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPE 732
Cdd:PRK14951 444 AVAlAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEE 493
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
612-745 1.03e-03

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 42.34  E-value: 1.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  612 PPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSPR 691
Cdd:pfam05539 168 PKTAVTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTSSNPEPQTEPPPSQRGPSGSP 247

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 194440691  692 PRAPQTSSPPPVRRGASA--SPQGRQSPSPS-TRPIRRVSRTPEPKKIKKAASPSPQ 745
Cdd:pfam05539 248 QHPPSTTSQDQSTTGDGQehTQRRKTPPATSnRRSPHSTATPPPTTKRQETGRPTPR 304
KAR9 pfam08580
Yeast cortical protein KAR9; The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal ...
 609-744 1.54e-03

Yeast cortical protein KAR9; The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules. KAR9 localizes at the shmoo tip in mating cells and at the tip of the growing bud in anaphase.


Pssm-ID: 430088 [Multi-domain]  Cd Length: 684  Bit Score: 42.12  E-value: 1.54e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  609 SPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRspPVTKRRSPSLSSKHRKGSSpgRSTREARSPQPNKRHSP 688
Cdd:pfam08580 483 STLKQTKRPSKIPRASPNHSGFLSTPSNTATSETPTPALR--PPSRPQPPPPGNRPRWNAS--TNTNDLDVGHNFKPLTL 558

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 194440691  689 SPRPRAPQTSSPP--------PVRRGASASPqgrqspSPSTRPIRRVSRTPEPKKIKKAASPSP 744
Cdd:pfam08580 559 TTPSPTPSRSSRSsstlppvsPLSRDKSRSP------APTCRSVSRASRRRASRKPTRIGSPNS 616
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 611-744 3.45e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 41.00  E-value: 3.45e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691 611 SPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPK-QRSPPVTKRRSPSLSSKHRKgsspgrSTREARSPQPNKRHSPS 689
Cdd:PRK07994 371 PPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASApQQAPAVPLPETTSQLLAARQ------QLQRAQGATKAKKSEPA 444

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 194440691 690 PRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPSP 744
Cdd:PRK07994 445 AASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKA 499
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 609-802 5.17e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 40.92  E-value: 5.17e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  609 SPSPPPKRRTASPPPPPKRRASPSPP------PKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSP-- 680
Cdd:PHA03307  219 SPAPAPGRSAADDAGASSSDSSSSESsgcgwgPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPsp 298

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  681 QPNKRHSPS--PRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSG 758
Cdd:PHA03307  299 SPSSPGSGPapSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSP 378

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 194440691  759 SPEPTAKKPPAPPSPVQSQSPSTNWSPAAPAKKAKSPTPSPSPA 802
Cdd:PHA03307  379 AASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAGAA 422
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 609-720 5.59e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 40.35  E-value: 5.59e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691 609 SPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSP 688
Cdd:PRK07764 393 APAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAA 472

                         90       100       110
                 ....*....|....*....|....*....|..
gi 194440691 689 SPRPRAPQTSSPPPVRRGAsASPQGRQSPSPS 720
Cdd:PRK07764 473 APEPTAAPAPAPPAAPAPA-AAPAAPAAPAAP 503
Gag_spuma pfam03276
Spumavirus gag protein;
610-718 6.50e-03

Spumavirus gag protein;


Pssm-ID: 460872 [Multi-domain]  Cd Length: 614  Bit Score: 40.12  E-value: 6.50e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  610 PSPPPKRRTASPPPPPK-------RRASPSPPPKRRVSHSPPPKQRSPPVTKRRSpslSSKHRKGSSPGRSTREARSPQP 682
Cdd:pfam03276 207 PAIPGIHARAPPGNIARslgddimPSLGDAGMPQPRFAFHPGNPFAEAEGHPFAE---AEGERPRDIPRAPRIDAPSAPA 283

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 194440691  683 NKRHSPSPRPRAPQTSSPPPVRRGASASPQGRQSPS 718
Cdd:pfam03276 284 IPAIQPIAPPMIPPIGAPIPIPHGASIPGEHIRNPR 319
PHA03247 PHA03247
large tegument protein UL36; Provisional
 604-801 6.64e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.31  E-value: 6.64e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  604 IQRRYSPSPPPKRRTASPPPPP--KRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPS-LSSKHRKGSSPGRSTREARSP 680
Cdd:PHA03247  238 VERRVVISHPLRGDIAAPAPPPvvGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDgVWGAALAGAPLALPAPPDPPP 317

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691  681 QPNKRH--------------SPSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEPKK-IKKAASPSPQ 745
Cdd:PHA03247  318 PAPAGDaeeeddedgamevvSPLPRPRQHYPLGFPKRRRPTWTPPSSLEDLSAGRHHPKRASLPTRKRRsARHAATPFAR 397

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 194440691  746 SVRRVSSSRSVSGSPEPTAKKPPAPPSPVQSQSPSTNwSPAAPAKKAKSPTPSPSP 801
Cdd:PHA03247  398 GPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPATP-LPSAEPGSDDGPAPPPER 452
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
608-810 6.68e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 40.22  E-value: 6.68e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691 608 YSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTkrrspslsskhrkGSSPGRSTREARSPQPNKRHS 687
Cdd:PRK07003 358 FEPAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVT-------------GAAGAALAPKAAAAAAATRAE 424

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691 688 PSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPTAKKP 767
Cdd:PRK07003 425 APPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATP 504

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 194440691 768 PAPPSPVQSQSPSTNWSPAAPAKKA-KSPTPSPSPARNSDQEGG 810
Cdd:PRK07003 505 AAVPDARAPAAASREDAPAAAAPPApEARPPTPAAAAPAARAGG 548
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 610-726 8.85e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.97  E-value: 8.85e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194440691 610 PSPPPKRRTASPPPPPKRRASPsPPPKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPS 689
Cdd:PRK07764 399 PSAAAAAPAAAPAPAAAAPAAA-AAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPT 477

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 194440691 690 PRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRR 726
Cdd:PRK07764 478 AAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLRE 514
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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