|
Name |
Accession |
Description |
Interval |
E-value |
| Rav1p_C super family |
cl13644 |
RAVE protein 1 C terminal; This domain family is found in eukaryotes, and is typically between ... |
1141-1876 |
1.85e-75 |
|
RAVE protein 1 C terminal; This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
The actual alignment was detected with superfamily member pfam12234:
Pssm-ID: 432413 Cd Length: 637 Bit Score: 265.97 E-value: 1.85e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 1141 LDWMSREDGSHILTVGIGSKLFMYGPMAgkvqeqtvkenqvfplWDSTKVVPLskFVLLRSVDLVSSVegapPFPVS-LS 1219
Cdd:pfam12234 76 LDWTSTPDSQSILAVGFPHHVLLLTQLR----------------YDYTNKGPS--WAPIRKIDIRDLT----PHPIGdSI 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 1220 WVRDGILVVGMDCEMHVYSQWqpsykqepviADSYNGSTPSILSLIKqsnssssglhppkktltrsmtslaqkicgkkST 1299
Cdd:pfam12234 134 WLDDGTLVVAAGNQLFIYDKW----------LDLRLPDDPFTLRSIG-------------------------------SR 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 1300 FDPSVDmedsgLFEAAHVLSPTLPQYHPLQLLELMDLGKVRRAKAILSHLVKCIagevvalnetessherrlrsltisas 1379
Cdd:pfam12234 173 KILSND-----LFHLVSVLNGPLPVYHPQFLIQCLLAGKLELVKEILLRLFKEL-------------------------- 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 1380 gsttrdpqafnKAENRDYTEIDSVPPLPLYALLAADDDSYYSSLEKTRNesslrkseqlSKESYDELFQTsvlmsdnhil 1459
Cdd:pfam12234 222 -----------KFYSEDLEDLDSFLGIDLEKFLKDDDKAYSKNKAFTSS----------SDDDDPDPYET---------- 270
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 1460 etdeentqprvidlsqysptyFGPEHAQVLSGHLLHSSLPGLTRMEQMSLMALADTIATTStdigesrdrsQGGETLDEC 1539
Cdd:pfam12234 271 ---------------------FNEEVASSLNEKLTKISLPQLTRHEQITLINVIEAVGEVE----------KHRRSLDEN 319
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 1540 GLKFLLAVRLHTflttslpAYRAQLLHQGLSTGHFAWAFHSVAEEELLNMLPAMQKDDPTWSELRAMGVGWWVRNARILR 1619
Cdd:pfam12234 320 GARFLLGFKLHL-------LHKKRTSQSSLSWRDISWALHSDNQEILLDLVSRHYGNKLLWEAARESGIFMWLKDIEALR 392
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 1620 RCIEKVAKAAFHRNN--DPLDAAIFYLAMKKKAVIWGLYRS------QKdtKMTQFFGHNFEEERWRKAALKNAFSLLGK 1691
Cdd:pfam12234 393 AQFEVIARNEYTKSDerDPVDCSLFYLALKKKQVLQGLWRMaswhpeQA--KTLKFLSNDFSEPRWRTAALKNAFALLSK 470
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 1692 QRFEHSAAFFLLGGCLKDAIEVCLEKLNDIQLALVIARLFESefDKSTTYKSILRKKVLGIgspASELNssninahhDPF 1771
Cdd:pfam12234 471 HRYEYAAAFFLLADSLKDAVNVLLRQLKDLQLAIAVARVYEG--DDGPVLRELLEERVLPL---AIKEG--------DRW 537
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 1772 LRSMAHWILEDYSAALETLIKQPVTEEED--QGMMSACNPVVFNFynyLRTHP--LLLRRHLGSsdtfSTHMALTGKSGL 1847
Cdd:pfam12234 538 LASWAFWMLKRRDLAVRALVTPPYDLLENtdLKKSDPASPVSKSF---LTDDPalVLLYQQLRK----KTLQTLKGALKV 610
|
730 740
....*....|....*....|....*....
gi 1714590890 1848 AGTInlsERRLFFTTASAHLKAGCPMLAL 1876
Cdd:pfam12234 611 TPKE---EYDFVLRVARIYDRMGCDLLAL 636
|
|
| WD40 super family |
cl29593 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
2746-3003 |
2.78e-22 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
The actual alignment was detected with superfamily member cd00200:
Pssm-ID: 475233 [Multi-domain] Cd Length: 289 Bit Score: 99.72 E-value: 2.78e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 2746 VRRMTSHPTLPYYLTGAQDGSVRMFEWGHSQQITCFRsGGNSRITRMRFNYQGNKFGIVDADGYLSLYQTNWKCCPVTgs 2825
Cdd:cd00200 12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK-GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRT-- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 2826 mpkpylaWQCHNKTANDFVFVSSSSLIATAGlstDNRNICLWDTlvaPANSLVHAFTCHDSGATVLAYAPKHQLLISGGR 2905
Cdd:cd00200 89 -------LTGHTSYVSSVAFSPDGRILSSSS---RDKTIKVWDV---ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 2906 KGFTCVFDLRQRQQRQLFQSHDSPVKAVAIDPTEEYFVTGSAEGNIKIWSLSTFSLLHTFIneharqsIFRNIGTGVMQI 2985
Cdd:cd00200 156 DGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR-------GHENGVNSVAFS 228
|
250
....*....|....*...
gi 1714590890 2986 ETGpaNHIFSCGADGTMK 3003
Cdd:cd00200 229 PDG--YLLASGSEDGTIR 244
|
|
| WD40 super family |
cl43672 |
WD40 repeat [General function prediction only]; |
114-267 |
8.57e-04 |
|
WD40 repeat [General function prediction only];
The actual alignment was detected with superfamily member COG2319:
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 44.52 E-value: 8.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 114 HNITWDPAGNRLLTGSsclqlwcninsrkqtedenADKTdlnfgdwVCIWHCKTASQVHLMK----------FSPDGEFF 183
Cdd:COG2319 208 RSVAFSPDGKLLASGS-------------------ADGT-------VRLWDLATGKLLRTLTghsgsvrsvaFSPDGRLL 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 184 ATAGkDDCLLKVWyNVENWRPAVTSPDknsekqsqgeidfsfvylaHPRAVNGFSWRKTSKYmprasvcnvLLTCCKDNV 263
Cdd:COG2319 262 ASGS-ADGTVRLW-DLATGELLRTLTG-------------------HSGGVNSVAFSPDGKL---------LASGSDDGT 311
|
....
gi 1714590890 264 CRLW 267
Cdd:COG2319 312 VRLW 315
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Rav1p_C |
pfam12234 |
RAVE protein 1 C terminal; This domain family is found in eukaryotes, and is typically between ... |
1141-1876 |
1.85e-75 |
|
RAVE protein 1 C terminal; This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Pssm-ID: 432413 Cd Length: 637 Bit Score: 265.97 E-value: 1.85e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 1141 LDWMSREDGSHILTVGIGSKLFMYGPMAgkvqeqtvkenqvfplWDSTKVVPLskFVLLRSVDLVSSVegapPFPVS-LS 1219
Cdd:pfam12234 76 LDWTSTPDSQSILAVGFPHHVLLLTQLR----------------YDYTNKGPS--WAPIRKIDIRDLT----PHPIGdSI 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 1220 WVRDGILVVGMDCEMHVYSQWqpsykqepviADSYNGSTPSILSLIKqsnssssglhppkktltrsmtslaqkicgkkST 1299
Cdd:pfam12234 134 WLDDGTLVVAAGNQLFIYDKW----------LDLRLPDDPFTLRSIG-------------------------------SR 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 1300 FDPSVDmedsgLFEAAHVLSPTLPQYHPLQLLELMDLGKVRRAKAILSHLVKCIagevvalnetessherrlrsltisas 1379
Cdd:pfam12234 173 KILSND-----LFHLVSVLNGPLPVYHPQFLIQCLLAGKLELVKEILLRLFKEL-------------------------- 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 1380 gsttrdpqafnKAENRDYTEIDSVPPLPLYALLAADDDSYYSSLEKTRNesslrkseqlSKESYDELFQTsvlmsdnhil 1459
Cdd:pfam12234 222 -----------KFYSEDLEDLDSFLGIDLEKFLKDDDKAYSKNKAFTSS----------SDDDDPDPYET---------- 270
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 1460 etdeentqprvidlsqysptyFGPEHAQVLSGHLLHSSLPGLTRMEQMSLMALADTIATTStdigesrdrsQGGETLDEC 1539
Cdd:pfam12234 271 ---------------------FNEEVASSLNEKLTKISLPQLTRHEQITLINVIEAVGEVE----------KHRRSLDEN 319
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 1540 GLKFLLAVRLHTflttslpAYRAQLLHQGLSTGHFAWAFHSVAEEELLNMLPAMQKDDPTWSELRAMGVGWWVRNARILR 1619
Cdd:pfam12234 320 GARFLLGFKLHL-------LHKKRTSQSSLSWRDISWALHSDNQEILLDLVSRHYGNKLLWEAARESGIFMWLKDIEALR 392
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 1620 RCIEKVAKAAFHRNN--DPLDAAIFYLAMKKKAVIWGLYRS------QKdtKMTQFFGHNFEEERWRKAALKNAFSLLGK 1691
Cdd:pfam12234 393 AQFEVIARNEYTKSDerDPVDCSLFYLALKKKQVLQGLWRMaswhpeQA--KTLKFLSNDFSEPRWRTAALKNAFALLSK 470
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 1692 QRFEHSAAFFLLGGCLKDAIEVCLEKLNDIQLALVIARLFESefDKSTTYKSILRKKVLGIgspASELNssninahhDPF 1771
Cdd:pfam12234 471 HRYEYAAAFFLLADSLKDAVNVLLRQLKDLQLAIAVARVYEG--DDGPVLRELLEERVLPL---AIKEG--------DRW 537
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 1772 LRSMAHWILEDYSAALETLIKQPVTEEED--QGMMSACNPVVFNFynyLRTHP--LLLRRHLGSsdtfSTHMALTGKSGL 1847
Cdd:pfam12234 538 LASWAFWMLKRRDLAVRALVTPPYDLLENtdLKKSDPASPVSKSF---LTDDPalVLLYQQLRK----KTLQTLKGALKV 610
|
730 740
....*....|....*....|....*....
gi 1714590890 1848 AGTInlsERRLFFTTASAHLKAGCPMLAL 1876
Cdd:pfam12234 611 TPKE---EYDFVLRVARIYDRMGCDLLAL 636
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
2746-3003 |
2.78e-22 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 99.72 E-value: 2.78e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 2746 VRRMTSHPTLPYYLTGAQDGSVRMFEWGHSQQITCFRsGGNSRITRMRFNYQGNKFGIVDADGYLSLYQTNWKCCPVTgs 2825
Cdd:cd00200 12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK-GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRT-- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 2826 mpkpylaWQCHNKTANDFVFVSSSSLIATAGlstDNRNICLWDTlvaPANSLVHAFTCHDSGATVLAYAPKHQLLISGGR 2905
Cdd:cd00200 89 -------LTGHTSYVSSVAFSPDGRILSSSS---RDKTIKVWDV---ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 2906 KGFTCVFDLRQRQQRQLFQSHDSPVKAVAIDPTEEYFVTGSAEGNIKIWSLSTFSLLHTFIneharqsIFRNIGTGVMQI 2985
Cdd:cd00200 156 DGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR-------GHENGVNSVAFS 228
|
250
....*....|....*...
gi 1714590890 2986 ETGpaNHIFSCGADGTMK 3003
Cdd:cd00200 229 PDG--YLLASGSEDGTIR 244
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
2666-3003 |
8.85e-20 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 94.59 E-value: 8.85e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 2666 LDVSGILATQIYTWVDDDTETETKGSEDFLVIHARDDLSAVQGTTPYTHSNPGTPINMPWLGSTQTGRGAsvmLKKAINN 2745
Cdd:COG2319 4 ADGAALAAASADLALALLAAALGALLLLLLGLAAAVASLAASPDGARLAAGAGDLTLLLLDAAAGALLAT---LLGHTAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 2746 VRRMTSHPTLPYYLTGAQDGSVRMFEWGHSQQITCFRsGGNSRITRMRFNYQGNKFGIVDADGYLSLYQTNwkccpvTGs 2825
Cdd:COG2319 81 VLSVAFSPDGRLLASASADGTVRLWDLATGLLLRTLT-GHTGAVRSVAFSPDGKTLASGSADGTVRLWDLA------TG- 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 2826 mpKPYLAWQCHNKTANDFVFVSSSSLIATAGlstDNRNICLWDtlvAPANSLVHAFTCHDSGATVLAYAPKHQLLISGGR 2905
Cdd:COG2319 153 --KLLRTLTGHSGAVTSVAFSPDGKLLASGS---DDGTVRLWD---LATGKLLRTLTGHTGAVRSVAFSPDGKLLASGSA 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 2906 KGFTCVFDLRQRQQRQLFQSHDSPVKAVAIDPTEEYFVTGSAEGNIKIWSLSTFSLLHTFINEHARqsifrnigtgVMQI 2985
Cdd:COG2319 225 DGTVRLWDLATGKLLRTLTGHSGSVRSVAFSPDGRLLASGSADGTVRLWDLATGELLRTLTGHSGG----------VNSV 294
|
330
....*....|....*....
gi 1714590890 2986 ETGP-ANHIFSCGADGTMK 3003
Cdd:COG2319 295 AFSPdGKLLASGSDDGTVR 313
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
2923-2955 |
4.50e-05 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 42.68 E-value: 4.50e-05
10 20 30
....*....|....*....|....*....|...
gi 1714590890 2923 FQSHDSPVKAVAIDPTEEYFVTGSAEGNIKIWS 2955
Cdd:smart00320 8 LKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
2923-2955 |
2.87e-04 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 40.41 E-value: 2.87e-04
10 20 30
....*....|....*....|....*....|...
gi 1714590890 2923 FQSHDSPVKAVAIDPTEEYFVTGSAEGNIKIWS 2955
Cdd:pfam00400 7 LEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
114-267 |
8.57e-04 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 44.52 E-value: 8.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 114 HNITWDPAGNRLLTGSsclqlwcninsrkqtedenADKTdlnfgdwVCIWHCKTASQVHLMK----------FSPDGEFF 183
Cdd:COG2319 208 RSVAFSPDGKLLASGS-------------------ADGT-------VRLWDLATGKLLRTLTghsgsvrsvaFSPDGRLL 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 184 ATAGkDDCLLKVWyNVENWRPAVTSPDknsekqsqgeidfsfvylaHPRAVNGFSWRKTSKYmprasvcnvLLTCCKDNV 263
Cdd:COG2319 262 ASGS-ADGTVRLW-DLATGELLRTLTG-------------------HSGGVNSVAFSPDGKL---------LASGSDDGT 311
|
....
gi 1714590890 264 CRLW 267
Cdd:COG2319 312 VRLW 315
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Rav1p_C |
pfam12234 |
RAVE protein 1 C terminal; This domain family is found in eukaryotes, and is typically between ... |
1141-1876 |
1.85e-75 |
|
RAVE protein 1 C terminal; This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Pssm-ID: 432413 Cd Length: 637 Bit Score: 265.97 E-value: 1.85e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 1141 LDWMSREDGSHILTVGIGSKLFMYGPMAgkvqeqtvkenqvfplWDSTKVVPLskFVLLRSVDLVSSVegapPFPVS-LS 1219
Cdd:pfam12234 76 LDWTSTPDSQSILAVGFPHHVLLLTQLR----------------YDYTNKGPS--WAPIRKIDIRDLT----PHPIGdSI 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 1220 WVRDGILVVGMDCEMHVYSQWqpsykqepviADSYNGSTPSILSLIKqsnssssglhppkktltrsmtslaqkicgkkST 1299
Cdd:pfam12234 134 WLDDGTLVVAAGNQLFIYDKW----------LDLRLPDDPFTLRSIG-------------------------------SR 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 1300 FDPSVDmedsgLFEAAHVLSPTLPQYHPLQLLELMDLGKVRRAKAILSHLVKCIagevvalnetessherrlrsltisas 1379
Cdd:pfam12234 173 KILSND-----LFHLVSVLNGPLPVYHPQFLIQCLLAGKLELVKEILLRLFKEL-------------------------- 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 1380 gsttrdpqafnKAENRDYTEIDSVPPLPLYALLAADDDSYYSSLEKTRNesslrkseqlSKESYDELFQTsvlmsdnhil 1459
Cdd:pfam12234 222 -----------KFYSEDLEDLDSFLGIDLEKFLKDDDKAYSKNKAFTSS----------SDDDDPDPYET---------- 270
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 1460 etdeentqprvidlsqysptyFGPEHAQVLSGHLLHSSLPGLTRMEQMSLMALADTIATTStdigesrdrsQGGETLDEC 1539
Cdd:pfam12234 271 ---------------------FNEEVASSLNEKLTKISLPQLTRHEQITLINVIEAVGEVE----------KHRRSLDEN 319
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 1540 GLKFLLAVRLHTflttslpAYRAQLLHQGLSTGHFAWAFHSVAEEELLNMLPAMQKDDPTWSELRAMGVGWWVRNARILR 1619
Cdd:pfam12234 320 GARFLLGFKLHL-------LHKKRTSQSSLSWRDISWALHSDNQEILLDLVSRHYGNKLLWEAARESGIFMWLKDIEALR 392
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 1620 RCIEKVAKAAFHRNN--DPLDAAIFYLAMKKKAVIWGLYRS------QKdtKMTQFFGHNFEEERWRKAALKNAFSLLGK 1691
Cdd:pfam12234 393 AQFEVIARNEYTKSDerDPVDCSLFYLALKKKQVLQGLWRMaswhpeQA--KTLKFLSNDFSEPRWRTAALKNAFALLSK 470
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 1692 QRFEHSAAFFLLGGCLKDAIEVCLEKLNDIQLALVIARLFESefDKSTTYKSILRKKVLGIgspASELNssninahhDPF 1771
Cdd:pfam12234 471 HRYEYAAAFFLLADSLKDAVNVLLRQLKDLQLAIAVARVYEG--DDGPVLRELLEERVLPL---AIKEG--------DRW 537
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 1772 LRSMAHWILEDYSAALETLIKQPVTEEED--QGMMSACNPVVFNFynyLRTHP--LLLRRHLGSsdtfSTHMALTGKSGL 1847
Cdd:pfam12234 538 LASWAFWMLKRRDLAVRALVTPPYDLLENtdLKKSDPASPVSKSF---LTDDPalVLLYQQLRK----KTLQTLKGALKV 610
|
730 740
....*....|....*....|....*....
gi 1714590890 1848 AGTInlsERRLFFTTASAHLKAGCPMLAL 1876
Cdd:pfam12234 611 TPKE---EYDFVLRVARIYDRMGCDLLAL 636
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
2746-3003 |
2.78e-22 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 99.72 E-value: 2.78e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 2746 VRRMTSHPTLPYYLTGAQDGSVRMFEWGHSQQITCFRsGGNSRITRMRFNYQGNKFGIVDADGYLSLYQTNWKCCPVTgs 2825
Cdd:cd00200 12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK-GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRT-- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 2826 mpkpylaWQCHNKTANDFVFVSSSSLIATAGlstDNRNICLWDTlvaPANSLVHAFTCHDSGATVLAYAPKHQLLISGGR 2905
Cdd:cd00200 89 -------LTGHTSYVSSVAFSPDGRILSSSS---RDKTIKVWDV---ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 2906 KGFTCVFDLRQRQQRQLFQSHDSPVKAVAIDPTEEYFVTGSAEGNIKIWSLSTFSLLHTFIneharqsIFRNIGTGVMQI 2985
Cdd:cd00200 156 DGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR-------GHENGVNSVAFS 228
|
250
....*....|....*...
gi 1714590890 2986 ETGpaNHIFSCGADGTMK 3003
Cdd:cd00200 229 PDG--YLLASGSEDGTIR 244
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
2784-3004 |
7.27e-21 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 95.48 E-value: 7.27e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 2784 GGNSRITRMRFNYQGNKFGIVDADGYLSLYQTNWKCCPVTGsmpkpylawQCHNKTANDFVFVSSSSLIATAGlstDNRN 2863
Cdd:cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTL---------KGHTGPVRDVAASADGTYLASGS---SDKT 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 2864 ICLWDTlvaPANSLVHAFTCHDSGATVLAYAPKHQLLISGGRKGFTCVFDLRQRQQRQLFQSHDSPVKAVAIDPTEEYFV 2943
Cdd:cd00200 75 IRLWDL---ETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVA 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1714590890 2944 TGSAEGNIKIWSLSTFSLLHTFineharqSIFRNIGTGVMQIETGpaNHIFSCGADGTMKM 3004
Cdd:cd00200 152 SSSQDGTIKLWDLRTGKCVATL-------TGHTGEVNSVAFSPDG--EKLLSSSSDGTIKL 203
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
2666-3003 |
8.85e-20 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 94.59 E-value: 8.85e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 2666 LDVSGILATQIYTWVDDDTETETKGSEDFLVIHARDDLSAVQGTTPYTHSNPGTPINMPWLGSTQTGRGAsvmLKKAINN 2745
Cdd:COG2319 4 ADGAALAAASADLALALLAAALGALLLLLLGLAAAVASLAASPDGARLAAGAGDLTLLLLDAAAGALLAT---LLGHTAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 2746 VRRMTSHPTLPYYLTGAQDGSVRMFEWGHSQQITCFRsGGNSRITRMRFNYQGNKFGIVDADGYLSLYQTNwkccpvTGs 2825
Cdd:COG2319 81 VLSVAFSPDGRLLASASADGTVRLWDLATGLLLRTLT-GHTGAVRSVAFSPDGKTLASGSADGTVRLWDLA------TG- 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 2826 mpKPYLAWQCHNKTANDFVFVSSSSLIATAGlstDNRNICLWDtlvAPANSLVHAFTCHDSGATVLAYAPKHQLLISGGR 2905
Cdd:COG2319 153 --KLLRTLTGHSGAVTSVAFSPDGKLLASGS---DDGTVRLWD---LATGKLLRTLTGHTGAVRSVAFSPDGKLLASGSA 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 2906 KGFTCVFDLRQRQQRQLFQSHDSPVKAVAIDPTEEYFVTGSAEGNIKIWSLSTFSLLHTFINEHARqsifrnigtgVMQI 2985
Cdd:COG2319 225 DGTVRLWDLATGKLLRTLTGHSGSVRSVAFSPDGRLLASGSADGTVRLWDLATGELLRTLTGHSGG----------VNSV 294
|
330
....*....|....*....
gi 1714590890 2986 ETGP-ANHIFSCGADGTMK 3003
Cdd:COG2319 295 AFSPdGKLLASGSDDGTVR 313
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
2759-3003 |
6.42e-19 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 92.28 E-value: 6.42e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 2759 LTGAQDGSVRMFEWGHSQQITCFRsGGNSRITRMRFNYQGNKFGIVDADGYLSLYQTNwkccpvTGsmpKPYLAWQCHNK 2838
Cdd:COG2319 136 ASGSADGTVRLWDLATGKLLRTLT-GHSGAVTSVAFSPDGKLLASGSDDGTVRLWDLA------TG---KLLRTLTGHTG 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 2839 TANDFVFVSSSSLIATAGlstDNRNICLWDtlvAPANSLVHAFTCHDSGATVLAYAPKHQLLISGGRKGFTCVFDLRQRQ 2918
Cdd:COG2319 206 AVRSVAFSPDGKLLASGS---ADGTVRLWD---LATGKLLRTLTGHSGSVRSVAFSPDGRLLASGSADGTVRLWDLATGE 279
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 2919 QRQLFQSHDSPVKAVAIDPTEEYFVTGSAEGNIKIWSLSTFSLLHTFINEHARqsifrnigtgVMQIETGPA-NHIFSCG 2997
Cdd:COG2319 280 LLRTLTGHSGGVNSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGA----------VRSVAFSPDgKTLASGS 349
|
....*.
gi 1714590890 2998 ADGTMK 3003
Cdd:COG2319 350 DDGTVR 355
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
2760-3003 |
1.08e-17 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 88.43 E-value: 1.08e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 2760 TGAQDGSVRMFEWGHSQQITCFRsGGNSRITRMRFNYQGNKFGIVDADGYLSLYQTNwkccpvTGSMPKPylaWQCHNKT 2839
Cdd:COG2319 179 SGSDDGTVRLWDLATGKLLRTLT-GHTGAVRSVAFSPDGKLLASGSADGTVRLWDLA------TGKLLRT---LTGHSGS 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 2840 ANDFVFVSSSSLIATAGlstDNRNICLWDtlvAPANSLVHAFTCHDSGATVLAYAPKHQLLISGGRKGFTCVFDLRQRQQ 2919
Cdd:COG2319 249 VRSVAFSPDGRLLASGS---ADGTVRLWD---LATGELLRTLTGHSGGVNSVAFSPDGKLLASGSDDGTVRLWDLATGKL 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 2920 RQLFQSHDSPVKAVAIDPTEEYFVTGSAEGNIKIWSLSTFSLLHTFiNEHARqsifrnigtGVMQIETGPA-NHIFSCGA 2998
Cdd:COG2319 323 LRTLTGHTGAVRSVAFSPDGKTLASGSDDGTVRLWDLATGELLRTL-TGHTG---------AVTSVAFSPDgRTLASGSA 392
|
....*
gi 1714590890 2999 DGTMK 3003
Cdd:COG2319 393 DGTVR 397
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
2760-2958 |
7.16e-17 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 85.73 E-value: 7.16e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 2760 TGAQDGSVRMFEWGHSQQITCFRsGGNSRITRMRFNYQGNKFGIVDADGYLSLYQTNwkccpvTGSMPKPYLAwqcHNKT 2839
Cdd:COG2319 221 SGSADGTVRLWDLATGKLLRTLT-GHSGSVRSVAFSPDGRLLASGSADGTVRLWDLA------TGELLRTLTG---HSGG 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 2840 ANDFVFVSSSSLIATAGlstDNRNICLWDtlvAPANSLVHAFTCHDSGATVLAYAPKHQLLISGGRKGFTCVFDLRQRQQ 2919
Cdd:COG2319 291 VNSVAFSPDGKLLASGS---DDGTVRLWD---LATGKLLRTLTGHTGAVRSVAFSPDGKTLASGSDDGTVRLWDLATGEL 364
|
170 180 190
....*....|....*....|....*....|....*....
gi 1714590890 2920 RQLFQSHDSPVKAVAIDPTEEYFVTGSAEGNIKIWSLST 2958
Cdd:COG2319 365 LRTLTGHTGAVTSVAFSPDGRTLASGSADGTVRLWDLAT 403
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
2744-2955 |
5.45e-15 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 78.15 E-value: 5.45e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 2744 NNVRRMTSHPTLPYYLTGAQDGSVRMFEWGHSQQITCFRsGGNSRITRMRFNyQGNKFGIV-DADGYLSLYQT-NWKCCP 2821
Cdd:cd00200 94 SYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR-GHTDWVNSVAFS-PDGTFVASsSQDGTIKLWDLrTGKCVA 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 2822 V-TGsmpkpylawqcHNKTANDFVFVSSSSLIATAGlstDNRNICLWDTLVApanSLVHAFTCHDSGATVLAYAPKHQLL 2900
Cdd:cd00200 172 TlTG-----------HTGEVNSVAFSPDGEKLLSSS---SDGTIKLWDLSTG---KCLGTLRGHENGVNSVAFSPDGYLL 234
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1714590890 2901 ISGGRKGFTCVFDLRQRQQRQLFQSHDSPVKAVAIDPTEEYFVTGSAEGNIKIWS 2955
Cdd:cd00200 235 ASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
2877-3004 |
5.77e-10 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 63.12 E-value: 5.77e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 2877 LVHAFTCHDSGATVLAYAPKHQLLISGGRKGFTCVFDLRQRQQRQLFQSHDSPVKAVAIDPTEEYFVTGSAEGNIKIWSL 2956
Cdd:cd00200 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1714590890 2957 STFSLLHTFinEHARQSIFrnigtGVMQIetgPANHIF-SCGADGTMKM 3004
Cdd:cd00200 81 ETGECVRTL--TGHTSYVS-----SVAFS---PDGRILsSSSRDKTIKV 119
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
2923-2955 |
4.50e-05 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 42.68 E-value: 4.50e-05
10 20 30
....*....|....*....|....*....|...
gi 1714590890 2923 FQSHDSPVKAVAIDPTEEYFVTGSAEGNIKIWS 2955
Cdd:smart00320 8 LKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
2923-2955 |
2.87e-04 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 40.41 E-value: 2.87e-04
10 20 30
....*....|....*....|....*....|...
gi 1714590890 2923 FQSHDSPVKAVAIDPTEEYFVTGSAEGNIKIWS 2955
Cdd:pfam00400 7 LEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
114-267 |
8.57e-04 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 44.52 E-value: 8.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 114 HNITWDPAGNRLLTGSsclqlwcninsrkqtedenADKTdlnfgdwVCIWHCKTASQVHLMK----------FSPDGEFF 183
Cdd:COG2319 208 RSVAFSPDGKLLASGS-------------------ADGT-------VRLWDLATGKLLRTLTghsgsvrsvaFSPDGRLL 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714590890 184 ATAGkDDCLLKVWyNVENWRPAVTSPDknsekqsqgeidfsfvylaHPRAVNGFSWRKTSKYmprasvcnvLLTCCKDNV 263
Cdd:COG2319 262 ASGS-ADGTVRLW-DLATGELLRTLTG-------------------HSGGVNSVAFSPDGKL---------LASGSDDGT 311
|
....
gi 1714590890 264 CRLW 267
Cdd:COG2319 312 VRLW 315
|
|
| |
