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Conserved domains on  [gi|157816887|ref|NP_001100826|]
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protein YAE1 homolog [Rattus norvegicus]

Protein Classification

Yae1 family protein( domain architecture ID 10561203)

Yae1 family protein similar to essential proteins Yae1 and Lto1, which act as binding partners of the cytosolic Fe-S protein assembly (CIA) targeting complex

Gene Ontology:  GO:0062092|GO:0106035

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Yae1_N pfam09811
Essential protein Yae1, N terminal; Members of this family are found in the N terminal region ...
 44-82 3.65e-11

Essential protein Yae1, N terminal; Members of this family are found in the N terminal region of the essential protein Yae1. Their exact function has not, as yet, been determined. The family DUF1715, pfam08215 has now been merged into this family.


:

Pssm-ID: 430844 [Multi-domain]  Cd Length: 39  Bit Score: 55.89  E-value: 3.65e-11
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 157816887   44 GYRDGIDAGKAVTLQQGFNQGYKEGADVILNYGLLRGTL 82
Cdd:pfam09811   1 GYREGISEGKEEGLQEGFDEGFQEGAQLGLEIGYLLGKL 39
fliH super family cl35368
flagellar assembly protein FliH;
5-68 3.47e-04

flagellar assembly protein FliH;


The actual alignment was detected with superfamily member PRK05687:

Pssm-ID: 235562 [Multi-domain]  Cd Length: 246  Bit Score: 40.30  E-value: 3.47e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 157816887   5 RATPEIPSPGDQDVFDEEADESLLVQR-EWQDHMRkrvQEGYRDGIDAGKAVTLQQGFNQGYKEG 68
Cdd:PRK05687  31 PPPEPAAPPPEPPEPEEVPEEEAAPLTeEELEAIR---QQAHEEGFAAGKAEGRAEGYEAGYQEG 92
 
Name Accession Description Interval E-value
Yae1_N pfam09811
Essential protein Yae1, N terminal; Members of this family are found in the N terminal region ...
 44-82 3.65e-11

Essential protein Yae1, N terminal; Members of this family are found in the N terminal region of the essential protein Yae1. Their exact function has not, as yet, been determined. The family DUF1715, pfam08215 has now been merged into this family.


Pssm-ID: 430844 [Multi-domain]  Cd Length: 39  Bit Score: 55.89  E-value: 3.65e-11
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 157816887   44 GYRDGIDAGKAVTLQQGFNQGYKEGADVILNYGLLRGTL 82
Cdd:pfam09811   1 GYREGISEGKEEGLQEGFDEGFQEGAQLGLEIGYLLGKL 39
fliH PRK05687
flagellar assembly protein FliH;
5-68 3.47e-04

flagellar assembly protein FliH;


Pssm-ID: 235562 [Multi-domain]  Cd Length: 246  Bit Score: 40.30  E-value: 3.47e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 157816887   5 RATPEIPSPGDQDVFDEEADESLLVQR-EWQDHMRkrvQEGYRDGIDAGKAVTLQQGFNQGYKEG 68
Cdd:PRK05687  31 PPPEPAAPPPEPPEPEEVPEEEAAPLTeEELEAIR---QQAHEEGFAAGKAEGRAEGYEAGYQEG 92
fliH PRK13386
flagellar assembly protein H; Provisional
 20-84 1.19e-03

flagellar assembly protein H; Provisional


Pssm-ID: 237372 [Multi-domain]  Cd Length: 236  Bit Score: 38.85  E-value: 1.19e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 157816887  20 DEEADESLLVQREWQDHmRKRVQEGYRDGIDAGKAVTLQQGFNQGYKEGADVILNYGLLRGTLSA 84
Cdd:PRK13386  24 KVRQVAPSAATLDPADY-QQQLMAGFQEGIQQGFDQGLEEGEEEGRQEGHAAGFAQGRQKGRIEG 87
 
Name Accession Description Interval E-value
Yae1_N pfam09811
Essential protein Yae1, N terminal; Members of this family are found in the N terminal region ...
 44-82 3.65e-11

Essential protein Yae1, N terminal; Members of this family are found in the N terminal region of the essential protein Yae1. Their exact function has not, as yet, been determined. The family DUF1715, pfam08215 has now been merged into this family.


Pssm-ID: 430844 [Multi-domain]  Cd Length: 39  Bit Score: 55.89  E-value: 3.65e-11
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 157816887   44 GYRDGIDAGKAVTLQQGFNQGYKEGADVILNYGLLRGTL 82
Cdd:pfam09811   1 GYREGISEGKEEGLQEGFDEGFQEGAQLGLEIGYLLGKL 39
fliH PRK05687
flagellar assembly protein FliH;
5-68 3.47e-04

flagellar assembly protein FliH;


Pssm-ID: 235562 [Multi-domain]  Cd Length: 246  Bit Score: 40.30  E-value: 3.47e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 157816887   5 RATPEIPSPGDQDVFDEEADESLLVQR-EWQDHMRkrvQEGYRDGIDAGKAVTLQQGFNQGYKEG 68
Cdd:PRK05687  31 PPPEPAAPPPEPPEPEEVPEEEAAPLTeEELEAIR---QQAHEEGFAAGKAEGRAEGYEAGYQEG 92
fliH PRK13386
flagellar assembly protein H; Provisional
 20-84 1.19e-03

flagellar assembly protein H; Provisional


Pssm-ID: 237372 [Multi-domain]  Cd Length: 236  Bit Score: 38.85  E-value: 1.19e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 157816887  20 DEEADESLLVQREWQDHmRKRVQEGYRDGIDAGKAVTLQQGFNQGYKEGADVILNYGLLRGTLSA 84
Cdd:PRK13386  24 KVRQVAPSAATLDPADY-QQQLMAGFQEGIQQGFDQGLEEGEEEGRQEGHAAGFAQGRQKGRIEG 87
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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