|
Name |
Accession |
Description |
Interval |
E-value |
| SH3_10 |
pfam17902 |
SH3 domain; This entry represents an SH3 domain. |
404-468 |
1.76e-25 |
|
SH3 domain; This entry represents an SH3 domain.
Pssm-ID: 407754 Cd Length: 65 Bit Score: 101.18 E-value: 1.76e-25
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 157818855 404 PLPQRRNPPKQPLHVDSICDWDSGEVQLLRGERYTLKDNADPYTWVVQGPGGETKSAPAACLCIP 468
Cdd:pfam17902 1 PLKQRRSPVTRPIPVKALCDYKQGEVTVEKGEECTLLDNSDREKWKVQTSSGVEKLVPSVCFLIP 65
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1096-1680 |
3.59e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.44 E-value: 3.59e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1096 RLQIEEDAARRKGAKEAVAKTQARIKDLEQAISSvepkvivkevkkveqdpgLLKEASRLRSLLEEEKNKNVMLARELQE 1175
Cdd:COG1196 224 ELEAELLLLKLRELEAELEELEAELEELEAELEE------------------LEAELAELEAELEELRLELEELELELEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1176 LQDKYRAVEKQKPKVQ-----LQERVSEIFQVHPETEQEILRLRAQLQETGSKKSCVEREVEKLLPELEVLRAQKPVVEY 1250
Cdd:COG1196 286 AQAEEYELLAELARLEqdiarLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1251 KEVTQEVVRHEKNPEVLREIDRLKAQLNELVNTHGRCQEQLIRLQGERDEWKRERSKVETKMVNKEVVRHEKDPVLEKEA 1330
Cdd:COG1196 366 ALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALE 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1331 ER-------------LRQEVREAVQKRRAAEDAVYELQNKYLLLERRRPEEQIVVQEVVVTQKDPKLHEEHSRLSRsLDE 1397
Cdd:COG1196 446 EAaeeeaeleeeeeaLLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRG-LAG 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1398 EVGRRRQLELEVRQ---------LSASVEEEEAMLSFEEDRSKKLAAERELRQLTLKIQELEKRPPALQEKIIMEEVVKL 1468
Cdd:COG1196 525 AVAVLIGVEAAYEAaleaalaaaLQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLV 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1469 EKDPDLERSTEALRRELDQEKNRVIELHRECKGLQVEVDLLQKTKSQEKTIykevirVEKDPVLESERARVWETLNRERA 1548
Cdd:COG1196 605 ASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEG------GSAGGSLTGGSRRELLAALLEAE 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1549 ARQSREEDVRSLKERIDRAEALRRSwslqkardqasqdcgRLQRELRELEQQKLQKAQQLQEEGRLLSQKTESERQKAAQ 1628
Cdd:COG1196 679 AELEELAERLAEEELELEEALLAEE---------------EEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLE 743
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 157818855 1629 RSQALSQLEAAILHEKDKIYEKERTLRDLHTKVSR---------EELnQETQTRETNLSTK 1680
Cdd:COG1196 744 EEELLEEEALEELPEPPDLEELERELERLEREIEAlgpvnllaiEEY-EELEERYDFLSEQ 803
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
853-1640 |
3.18e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.48 E-value: 3.18e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 853 IQAQEKNLTKA-YTEVAAAEQQQLHQLEFAKKMLEKKELNEDfqaihsarqgsgspahtkTESEVLKTQLEEERKRVAEV 931
Cdd:TIGR02168 218 LKAELRELELAlLVLRLEELREELEELQEELKEAEEELEELT------------------AELQELEEKLEELRLEVSEL 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 932 QRELEERRQQLLQLRTQqpVARLEEKEVVEFYRDPQLKSNVLQASSRLEEEGKRR-------ARLQAELEVVAQKVVHLE 1004
Cdd:TIGR02168 280 EEEIEELQKELYALANE--ISRLEQQKQILRERLANLERQLEELEAQLEELESKLdelaeelAELEEKLEELKEELESLE 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1005 GK---RKAMQPHLLTKEVTQIERDPGLDSQVTQLHNEMQGLRGENAVLAARLEGLKDELLTLEQKEINVKEKVVVKEVVK 1081
Cdd:TIGR02168 358 AEleeLEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKE 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1082 VEKDLEmvkaaqTLRLQIEEDAARRKGAKEAVAKTQARIKDLEQAISSVEpkvivkevkkveqdpgllKEASRLRSLLEe 1161
Cdd:TIGR02168 438 LQAELE------ELEEELEELQEELERLEEALEELREELEEAEQALDAAE------------------RELAQLQARLD- 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1162 eknknvMLARELQELQDKYRAV----EKQKPKVQLQERVSEIFQVHPETEQEI---LRLRAQLQETGSKKScVEREVEKL 1234
Cdd:TIGR02168 493 ------SLERLQENLEGFSEGVkallKNQSGLSGILGVLSELISVDEGYEAAIeaaLGGRLQAVVVENLNA-AKKAIAFL 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1235 LP---------ELEVLRAQKPVVEYKEVTQEV-------VRHEKNPEVLRE-----------IDRLKAQLNELVNTHGRc 1287
Cdd:TIGR02168 566 KQnelgrvtflPLDSIKGTEIQGNDREILKNIegflgvaKDLVKFDPKLRKalsyllggvlvVDDLDNALELAKKLRPG- 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1288 qEQLIRLQGERDEWK----RERSKVETKMVNKEVVRHEkdpvLEKEAERLRQEVREAVQKRRAAEDAVYELQNKYLLLER 1363
Cdd:TIGR02168 645 -YRIVTLDGDLVRPGgvitGGSAKTNSSILERRREIEE----LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRK 719
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1364 RRPEEQIVVQEvvvtqkdpkLHEEHSRLSRSLDEEVGRRRQLELEVRQLSASVEEEEAMLsfEEDRSKKLAAERELRQLT 1443
Cdd:TIGR02168 720 ELEELSRQISA---------LRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERL--EEAEEELAEAEAEIEELE 788
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1444 LKIQELEKRPPALQEKI-IMEEVVKLEKDP--DLERSTEALRRELDQEKNRVIELHRECKGLQVEVDLLQKT-KSQEKTI 1519
Cdd:TIGR02168 789 AQIEQLKEELKALREALdELRAELTLLNEEaaNLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEiEELEELI 868
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1520 YKEVIRVEKdpvLESERARVWETLNRERAARQSREEDVRSLKERIDRAEALRRswSLQKARDQASQDCGRLQRELRELEQ 1599
Cdd:TIGR02168 869 EELESELEA---LLNERASLEEALALLRSELEELSEELRELESKRSELRRELE--ELREKLAQLELRLEGLEVRIDNLQE 943
|
810 820 830 840
....*....|....*....|....*....|....*....|.
gi 157818855 1600 QKLQKAQQLQEEGRLLSQKTESERQKAAQRsqaLSQLEAAI 1640
Cdd:TIGR02168 944 RLSEEYSLTLEEAEALENKIEDDEEEARRR---LKRLENKI 981
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1087-1695 |
5.76e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 68.24 E-value: 5.76e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1087 EMVKAAQTLRLQIEEDAARRKGAKEAVAKTQARIKDLEQAISSVEPKVIVKEVKKVEQDPGLLKEASRLRSLLEEEKNKN 1166
Cdd:PTZ00121 1209 EEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEE 1288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1167 VMLARELQELQDKyRAVEKQKPKVQLQERVSEIFQVHPETEQEILRLRAQLQETGSKKSCVEREVEKLLPELEVLRAQKP 1246
Cdd:PTZ00121 1289 KKKADEAKKAEEK-KKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAE 1367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1247 VVEYK--EVTQEVVRHEKNPEVLREIDRLKAQLNElvntHGRCQEQLIRLQGERDEWKRERSKVETKM----VNKEVVRH 1320
Cdd:PTZ00121 1368 AAEKKkeEAKKKADAAKKKAEEKKKADEAKKKAEE----DKKKADELKKAAAAKKKADEAKKKAEEKKkadeAKKKAEEA 1443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1321 EKDPVLEKEAERLR---------QEVREAVQKRRAAEDAVYELQNKYLLLERRRPEEQIVVQEVVVTQKDPKLHEEHSRL 1391
Cdd:PTZ00121 1444 KKADEAKKKAEEAKkaeeakkkaEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKK 1523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1392 SRSLDEEVGRRRQLEL----------------EVRQLSASVEEEEAMLSfEEDRSKKLAAERELRQL-------TLKIQE 1448
Cdd:PTZ00121 1524 ADEAKKAEEAKKADEAkkaeekkkadelkkaeELKKAEEKKKAEEAKKA-EEDKNMALRKAEEAKKAeearieeVMKLYE 1602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1449 LEKRPPALQEKIIMEEVVKLE---KDPDLERSTEALRRELDQEKNRVIELHRECKGLQVEVDLLQKTKSQEKTIYKEVIR 1525
Cdd:PTZ00121 1603 EEKKMKAEEAKKAEEAKIKAEelkKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKK 1682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1526 VEKDPVLESER-ARVWETLNRERAARQSREEDVRSlKERIDRAEALRRSwSLQKARDQASQDcgrlQRELRELeqqklqk 1604
Cdd:PTZ00121 1683 AEEDEKKAAEAlKKEAEEAKKAEELKKKEAEEKKK-AEELKKAEEENKI-KAEEAKKEAEED----KKKAEEA------- 1749
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1605 aqqlqeegrllsQKTESERQKAAQRSQALSQLEAAILHEKDKIYEKERTLRDLHTKVSREELNQETQTRETNLStkicil 1684
Cdd:PTZ00121 1750 ------------KKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANII------ 1811
|
650
....*....|.
gi 157818855 1685 epETGNDMSPY 1695
Cdd:PTZ00121 1812 --EGGKEGNLV 1820
|
|
| Plectin |
pfam00681 |
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous ... |
1853-1891 |
1.07e-09 |
|
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous pemphigoid antigen.
Pssm-ID: 459901 Cd Length: 39 Bit Score: 55.41 E-value: 1.07e-09
10 20 30
....*....|....*....|....*....|....*....
gi 157818855 1853 LLEAQAATGGIVDLLSRERYSVHKAVEQGLIENTSTQRL 1891
Cdd:pfam00681 1 LLEAQAATGGIIDPVTGERLSVEEAVKRGLIDPETAQKL 39
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1148-1452 |
7.02e-09 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 60.91 E-value: 7.02e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1148 LLKEASRLRSLLEEEKNKNVMLARELQELQDKYRAV---EKQKPKVQLQERVSEIFQVHpetEQEILRLRAQLQETGSKK 1224
Cdd:pfam17380 308 KAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAmerERELERIRQEERKRELERIR---QEEIAMEISRMRELERLQ 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1225 SCVEREVEKLLPELEVLRAQKPVVEYKE-------VTQEVVRHEKNPEVLREIDRLKAQ----LNELVNTHGRCQEQLIR 1293
Cdd:pfam17380 385 MERQQKNERVRQELEAARKVKILEEERQrkiqqqkVEMEQIRAEQEEARQREVRRLEEErareMERVRLEEQERQQQVER 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1294 LQGERDEWKRERSKVETKMVNKEVVRHEKDPVLEKEAERLRQEVREAVQKRRAAEDAVYELQNKYLLLERRRpeeqivvq 1373
Cdd:pfam17380 465 LRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRR-------- 536
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 157818855 1374 evvvtqkdpKLHEEhsrlsrsldeevgRRRQLELEVRQlsasvEEEEAMLSFEEDRSKKLAAERElRQLTLKIQELEKR 1452
Cdd:pfam17380 537 ---------EAEEE-------------RRKQQEMEERR-----RIQEQMRKATEERSRLEAMERE-REMMRQIVESEKA 587
|
|
| SPEC |
cd00176 |
Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members ... |
228-358 |
2.14e-07 |
|
Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Pssm-ID: 238103 [Multi-domain] Cd Length: 213 Bit Score: 53.60 E-value: 2.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 228 LYTHLQGCTKQLGALADQQGRILQQDwsDLMPDPAGVRREYEHFK--QHELLAQEQSINQLEDDAERMVELGHPAIGPIQ 305
Cdd:cd00176 1 KLQQFLRDADELEAWLSEKEELLSST--DYGDDLESVEALLKKHEalEAELAAHEERVEALNELGEQLIEEGHPDAEEIQ 78
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 157818855 306 AHQEALKMEWQNFLNLCICQESQLQHVEDYRRFQEEADSASQTLAKLSSNLDT 358
Cdd:cd00176 79 ERLEELNQRWEELRELAEERRQRLEEALDLQQFFRDADDLEQWLEEKEAALAS 131
|
|
| PLEC |
smart00250 |
Plectin repeat; |
1889-1926 |
2.42e-07 |
|
Plectin repeat;
Pssm-ID: 197605 Cd Length: 38 Bit Score: 48.63 E-value: 2.42e-07
10 20 30
....*....|....*....|....*....|....*...
gi 157818855 1889 QRLLNAQKAFTGIEDPVTRKRLSVGEAIQKGWMPQESV 1926
Cdd:smart00250 1 QRLLEAQSAIGGIIDPETGQKLSVEEALRRGLIDPETG 38
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
668-1312 |
6.28e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.94 E-value: 6.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 668 LQERVSELQRQRKELlQQQACVLGLHRQLKAAEhacgalqnnfqefcqdlprQQRQVRALTDRYHSVGDQLDLREKILQD 747
Cdd:COG1196 191 LEDILGELERQLEPL-ERQAEKAERYRELKEEL-------------------KELEAELLLLKLRELEAELEELEAELEE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 748 ASLTHQQLKNSRDNLSSWLEQLPHHRVQPSDgpsQIAYKLQAQKRLIQEILGREQDQATVARLTRDLQEALQEYELRADT 827
Cdd:COG1196 251 LEAELEELEAELAELEAELEELRLELEELEL---ELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 828 yrcsleptlavsapKRLRVISLKENIQAQEKNLTKAYTEVAAAEQQQLHQLEfaKKMLEKKELNEDFQAIHSARQGSGSP 907
Cdd:COG1196 328 --------------LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEE--ALLEAEAELAEAEEELEELAEELLEA 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 908 AHTKTESEVLKTQLEEERKRVAEVQRELEERRQQLLQLRTQQPVARLEEKEVVEfyrdpQLKSNVLQASSRLEEEGKRRA 987
Cdd:COG1196 392 LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALE-----EAAEEEAELEEEEEALLELLA 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 988 RLQAELEVVAQKVVHLEGKRKAMQPHLLTKEvTQIERDPGLDSQVTQLHnemqglrgeNAVLAARLEGLKDELLTLEQKE 1067
Cdd:COG1196 467 ELLEEAALLEAALAELLEELAEAAARLLLLL-EAEADYEGFLEGVKAAL---------LLAGLRGLAGAVAVLIGVEAAY 536
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1068 INVKEKVVVKEVVKVEkdlemVKAAQTLRLQIEEDAARRKGAKEAVAKTQARIKDLEQAISSVEPKVIVKEVKKVEQDPG 1147
Cdd:COG1196 537 EAALEAALAAALQNIV-----VEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREA 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1148 LLKEASRLRSLLEEEKNKNVMLARELQELQDKYRAVEKQKPKVQLQERVSEIFQVHPETEQEILRLRAQLQETGSKKSCV 1227
Cdd:COG1196 612 DARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEE 691
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1228 EREVEKLLPELEVLRAQKPVVEYKEVTQEVVRHEKNPEVLREIDRLKAQLNELVNTHGRCQEQLIRLQGERDEWKRERSK 1307
Cdd:COG1196 692 ELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELER 771
|
....*
gi 157818855 1308 VETKM 1312
Cdd:COG1196 772 LEREI 776
|
|
| PLEC |
smart00250 |
Plectin repeat; |
1851-1884 |
2.78e-06 |
|
Plectin repeat;
Pssm-ID: 197605 Cd Length: 38 Bit Score: 45.55 E-value: 2.78e-06
10 20 30
....*....|....*....|....*....|....
gi 157818855 1851 QKLLEAQAATGGIVDLLSRERYSVHKAVEQGLIE 1884
Cdd:smart00250 1 QRLLEAQSAIGGIIDPETGQKLSVEEALRRGLID 34
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
473-1221 |
3.28e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.37 E-value: 3.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 473 EAVAKASRLASELQTLKQKLSTEKSRL--KNASAEHLQQGQQAPAGS-APADPQAQKLLSQMTQLDGDLGQVERQVLSWA 549
Cdd:TIGR02168 250 EAEEELEELTAELQELEEKLEELRLEVseLEEEIEELQKELYALANEiSRLEQQKQILRERLANLERQLEELEAQLEELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 550 RSPLNDSSPLKDLEGRIQSCEGTAQHLQNLGAEKEAAQQECEaflstkptgSAALQLPVVLNNVKNKYSDvhslcylyge 629
Cdd:TIGR02168 330 SKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELE---------SRLEELEEQLETLRSKVAQ---------- 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 630 kakaalgLEKQIQEADGIIQGFEATLAQegpipegsgaLQERVSELQRQRKELLQqqacvlglhrqlKAAEHACGALQNN 709
Cdd:TIGR02168 391 -------LELQIASLNNEIERLEARLER----------LEDRRERLQQEIEELLK------------KLEEAELKELQAE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 710 FQEFCQDLPRQQRQVRALTDRYHSVGDQLDLREKILQDASLTHQQLKNSRDNLSSWLEQLphhrvqpsDGPSQIAYKLQA 789
Cdd:TIGR02168 442 LEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENL--------EGFSEGVKALLK 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 790 QKRLIQEILGREQDQATV-----------------ARLTRDLQEALQEYEL--RADTYRCSLEPTLAVSAPK----RLRV 846
Cdd:TIGR02168 514 NQSGLSGILGVLSELISVdegyeaaieaalggrlqAVVVENLNAAKKAIAFlkQNELGRVTFLPLDSIKGTEiqgnDREI 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 847 ISLKENIQAQEKNLTKAYTEVAAAEQQQLHQL----EFAKKMLEKKELNEDFQAIHSA-----RQGSGSPAHTKTESEVL 917
Cdd:TIGR02168 594 LKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVlvvdDLDNALELAKKLRPGYRIVTLDgdlvrPGGVITGGSAKTNSSIL 673
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 918 KTQ--LEEERKRVAEVQRELEERRQQLLQLRTQQPVARLEEKEVVEFYRDPQLKSNVLQAS-SRLEEE----GKRRARLQ 990
Cdd:TIGR02168 674 ERRreIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDlARLEAEveqlEERIAQLS 753
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 991 AELEVVAQKVVHLEGKRKAMQPHLLTKEVTQIErdpgLDSQVTQLHNEMQGLRGENAVLAARLEGLKDELLTLEQKEINV 1070
Cdd:TIGR02168 754 KELTELEAEIEELEERLEEAEEELAEAEAEIEE----LEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESL 829
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1071 KEKVVVKEVVKVekdlEMVKAAQTLRLQIEEDAARRKGAKEAVAKTQARIKDLEQAISSVEPKVIVKEVKKVEQDPGLL- 1149
Cdd:TIGR02168 830 ERRIAATERRLE----DLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRe 905
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1150 --KEASRLRSLLEEEKNKNVMLARELQELQDKYRavekqkpkvQLQERVSEIFQVHPE---------------TEQEILR 1212
Cdd:TIGR02168 906 leSKRSELRRELEELREKLAQLELRLEGLEVRID---------NLQERLSEEYSLTLEeaealenkieddeeeARRRLKR 976
|
....*....
gi 157818855 1213 LRAQLQETG 1221
Cdd:TIGR02168 977 LENKIKELG 985
|
|
| Plectin |
pfam00681 |
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous ... |
1932-1967 |
1.98e-05 |
|
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous pemphigoid antigen.
Pssm-ID: 459901 Cd Length: 39 Bit Score: 43.09 E-value: 1.98e-05
10 20 30
....*....|....*....|....*....|....*.
gi 157818855 1932 VQHLTGGLIDPKRTGRIPVPQAVLCGMISEDLGQLL 1967
Cdd:pfam00681 4 AQAATGGIIDPVTGERLSVEEAVKRGLIDPETAQKL 39
|
|
| SPEC |
smart00150 |
Spectrin repeats; |
256-330 |
3.57e-05 |
|
Spectrin repeats;
Pssm-ID: 197544 [Multi-domain] Cd Length: 101 Bit Score: 44.63 E-value: 3.57e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 157818855 256 DLMPDPAGVRREYEHFK--QHELLAQEQSINQLEDDAERMVELGHPAIGPIQAHQEALKMEWQNFLNLCICQESQLQ 330
Cdd:smart00150 25 DLGKDLESVEALLKKHEafEAELEAHEERVEALNELGEQLIEEGHPDAEEIEERLEELNERWEELKELAEERRQKLE 101
|
|
| Plectin |
pfam00681 |
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous ... |
1683-1711 |
2.92e-04 |
|
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous pemphigoid antigen.
Pssm-ID: 459901 Cd Length: 39 Bit Score: 40.00 E-value: 2.92e-04
10 20
....*....|....*....|....*....
gi 157818855 1683 ILEPETGNDMSPYEAYKRGIIDRGQYLQL 1711
Cdd:pfam00681 11 IIDPVTGERLSVEEAVKRGLIDPETAQKL 39
|
|
| PLEC |
smart00250 |
Plectin repeat; |
1813-1850 |
1.91e-03 |
|
Plectin repeat;
Pssm-ID: 197605 Cd Length: 38 Bit Score: 37.46 E-value: 1.91e-03
10 20 30
....*....|....*....|....*....|....*...
gi 157818855 1813 LGLTEDSFPIAGVYDTTTDNKCSIKAAVAKNMLDPITG 1850
Cdd:smart00250 1 QRLLEAQSAIGGIIDPETGQKLSVEEALRRGLIDPETG 38
|
|
| PspC_subgroup_1 |
NF033838 |
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
1153-1533 |
6.12e-03 |
|
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.
Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 41.54 E-value: 6.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1153 SRLRSLLEEEKN-KNVMLARELQELQDKY---RAVEKQKPKVQLQERV-SEIFQVHPETEQEILRLRAQLQETGSKkscV 1227
Cdd:NF033838 72 SEIQKSLDKRKHtQNVALNKKLSDIKTEYlyeLNVLKEKSEAELTSKTkKELDAAFEQFKKDTLEPGKKVAEATKK---V 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1228 EREVEKLLPELEVLRAQKPVVEYKevTQEVVRHEKNPEVLR-EIDRLKAQLNElvnthgrcqeqlirlqgERDEWKRERS 1306
Cdd:NF033838 149 EEAEKKAKDQKEEDRRNYPTNTYK--TLELEIAESDVEVKKaELELVKEEAKE-----------------PRDEEKIKQA 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1307 KVETKMVNKEVVRHEKDPVLEKEAERLRQEVREAVQKRRAAEDAVYELQNKyllLERRRpeeqIVVQEVVVTQKDPKLHE 1386
Cdd:NF033838 210 KAKVESKKAEATRLEKIKTDREKAEEEAKRRADAKLKEAVEKNVATSEQDK---PKRRA----KRGVLGEPATPDKKEND 282
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1387 EHSRLSrSLDEEVGRRRQLELEVRQLSASVEEEEAmlsfeEDRSKKLAAE--RELRQLTLKIQELEkrppalqekiIMEE 1464
Cdd:NF033838 283 AKSSDS-SVGEETLPSPSLKPEKKVAEAEKKVEEA-----KKKAKDQKEEdrRNYPTNTYKTLELE----------IAES 346
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 157818855 1465 VVKLeKDPDLERSTEALRRELDQEKNRVIELHRECKglQVEVDLLQKTKSQEKTIYKEVIR--VEKDPVLE 1533
Cdd:NF033838 347 DVKV-KEAELELVKEEAKEPRNEEKIKQAKAKVESK--KAEATRLEKIKTDRKKAEEEAKRkaAEEDKVKE 414
|
|
| PLEC |
smart00250 |
Plectin repeat; |
1683-1708 |
9.31e-03 |
|
Plectin repeat;
Pssm-ID: 197605 Cd Length: 38 Bit Score: 35.54 E-value: 9.31e-03
10 20
....*....|....*....|....*.
gi 157818855 1683 ILEPETGNDMSPYEAYKRGIIDRGQY 1708
Cdd:smart00250 13 IIDPETGQKLSVEEALRRGLIDPETG 38
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| SH3_10 |
pfam17902 |
SH3 domain; This entry represents an SH3 domain. |
404-468 |
1.76e-25 |
|
SH3 domain; This entry represents an SH3 domain.
Pssm-ID: 407754 Cd Length: 65 Bit Score: 101.18 E-value: 1.76e-25
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 157818855 404 PLPQRRNPPKQPLHVDSICDWDSGEVQLLRGERYTLKDNADPYTWVVQGPGGETKSAPAACLCIP 468
Cdd:pfam17902 1 PLKQRRSPVTRPIPVKALCDYKQGEVTVEKGEECTLLDNSDREKWKVQTSSGVEKLVPSVCFLIP 65
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1096-1680 |
3.59e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.44 E-value: 3.59e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1096 RLQIEEDAARRKGAKEAVAKTQARIKDLEQAISSvepkvivkevkkveqdpgLLKEASRLRSLLEEEKNKNVMLARELQE 1175
Cdd:COG1196 224 ELEAELLLLKLRELEAELEELEAELEELEAELEE------------------LEAELAELEAELEELRLELEELELELEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1176 LQDKYRAVEKQKPKVQ-----LQERVSEIFQVHPETEQEILRLRAQLQETGSKKSCVEREVEKLLPELEVLRAQKPVVEY 1250
Cdd:COG1196 286 AQAEEYELLAELARLEqdiarLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1251 KEVTQEVVRHEKNPEVLREIDRLKAQLNELVNTHGRCQEQLIRLQGERDEWKRERSKVETKMVNKEVVRHEKDPVLEKEA 1330
Cdd:COG1196 366 ALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALE 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1331 ER-------------LRQEVREAVQKRRAAEDAVYELQNKYLLLERRRPEEQIVVQEVVVTQKDPKLHEEHSRLSRsLDE 1397
Cdd:COG1196 446 EAaeeeaeleeeeeaLLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRG-LAG 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1398 EVGRRRQLELEVRQ---------LSASVEEEEAMLSFEEDRSKKLAAERELRQLTLKIQELEKRPPALQEKIIMEEVVKL 1468
Cdd:COG1196 525 AVAVLIGVEAAYEAaleaalaaaLQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLV 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1469 EKDPDLERSTEALRRELDQEKNRVIELHRECKGLQVEVDLLQKTKSQEKTIykevirVEKDPVLESERARVWETLNRERA 1548
Cdd:COG1196 605 ASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEG------GSAGGSLTGGSRRELLAALLEAE 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1549 ARQSREEDVRSLKERIDRAEALRRSwslqkardqasqdcgRLQRELRELEQQKLQKAQQLQEEGRLLSQKTESERQKAAQ 1628
Cdd:COG1196 679 AELEELAERLAEEELELEEALLAEE---------------EEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLE 743
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 157818855 1629 RSQALSQLEAAILHEKDKIYEKERTLRDLHTKVSR---------EELnQETQTRETNLSTK 1680
Cdd:COG1196 744 EEELLEEEALEELPEPPDLEELERELERLEREIEAlgpvnllaiEEY-EELEERYDFLSEQ 803
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
853-1640 |
3.18e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.48 E-value: 3.18e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 853 IQAQEKNLTKA-YTEVAAAEQQQLHQLEFAKKMLEKKELNEDfqaihsarqgsgspahtkTESEVLKTQLEEERKRVAEV 931
Cdd:TIGR02168 218 LKAELRELELAlLVLRLEELREELEELQEELKEAEEELEELT------------------AELQELEEKLEELRLEVSEL 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 932 QRELEERRQQLLQLRTQqpVARLEEKEVVEFYRDPQLKSNVLQASSRLEEEGKRR-------ARLQAELEVVAQKVVHLE 1004
Cdd:TIGR02168 280 EEEIEELQKELYALANE--ISRLEQQKQILRERLANLERQLEELEAQLEELESKLdelaeelAELEEKLEELKEELESLE 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1005 GK---RKAMQPHLLTKEVTQIERDPGLDSQVTQLHNEMQGLRGENAVLAARLEGLKDELLTLEQKEINVKEKVVVKEVVK 1081
Cdd:TIGR02168 358 AEleeLEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKE 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1082 VEKDLEmvkaaqTLRLQIEEDAARRKGAKEAVAKTQARIKDLEQAISSVEpkvivkevkkveqdpgllKEASRLRSLLEe 1161
Cdd:TIGR02168 438 LQAELE------ELEEELEELQEELERLEEALEELREELEEAEQALDAAE------------------RELAQLQARLD- 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1162 eknknvMLARELQELQDKYRAV----EKQKPKVQLQERVSEIFQVHPETEQEI---LRLRAQLQETGSKKScVEREVEKL 1234
Cdd:TIGR02168 493 ------SLERLQENLEGFSEGVkallKNQSGLSGILGVLSELISVDEGYEAAIeaaLGGRLQAVVVENLNA-AKKAIAFL 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1235 LP---------ELEVLRAQKPVVEYKEVTQEV-------VRHEKNPEVLRE-----------IDRLKAQLNELVNTHGRc 1287
Cdd:TIGR02168 566 KQnelgrvtflPLDSIKGTEIQGNDREILKNIegflgvaKDLVKFDPKLRKalsyllggvlvVDDLDNALELAKKLRPG- 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1288 qEQLIRLQGERDEWK----RERSKVETKMVNKEVVRHEkdpvLEKEAERLRQEVREAVQKRRAAEDAVYELQNKYLLLER 1363
Cdd:TIGR02168 645 -YRIVTLDGDLVRPGgvitGGSAKTNSSILERRREIEE----LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRK 719
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1364 RRPEEQIVVQEvvvtqkdpkLHEEHSRLSRSLDEEVGRRRQLELEVRQLSASVEEEEAMLsfEEDRSKKLAAERELRQLT 1443
Cdd:TIGR02168 720 ELEELSRQISA---------LRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERL--EEAEEELAEAEAEIEELE 788
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1444 LKIQELEKRPPALQEKI-IMEEVVKLEKDP--DLERSTEALRRELDQEKNRVIELHRECKGLQVEVDLLQKT-KSQEKTI 1519
Cdd:TIGR02168 789 AQIEQLKEELKALREALdELRAELTLLNEEaaNLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEiEELEELI 868
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1520 YKEVIRVEKdpvLESERARVWETLNRERAARQSREEDVRSLKERIDRAEALRRswSLQKARDQASQDCGRLQRELRELEQ 1599
Cdd:TIGR02168 869 EELESELEA---LLNERASLEEALALLRSELEELSEELRELESKRSELRRELE--ELREKLAQLELRLEGLEVRIDNLQE 943
|
810 820 830 840
....*....|....*....|....*....|....*....|.
gi 157818855 1600 QKLQKAQQLQEEGRLLSQKTESERQKAAQRsqaLSQLEAAI 1640
Cdd:TIGR02168 944 RLSEEYSLTLEEAEALENKIEDDEEEARRR---LKRLENKI 981
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
967-1487 |
6.28e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.59 E-value: 6.28e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 967 QLKSNVLQASSRLEEEGKRRARLQAELEVVAQKVVHLEGKRKAMQPHLLTKEVTQIErdpgLDSQVTQLHNEMQGLRGEN 1046
Cdd:COG1196 271 ELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAE----LEEELEELEEELEELEEEL 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1047 AVLAARLEGLKDELLTLEQKEINVKEKVVVKEVV---KVEKDLEMVKAAQTLRLQIEEDAARRKGAKEAVAKTQARIKDL 1123
Cdd:COG1196 347 EEAEEELEEAEAELAEAEEALLEAEAELAEAEEEleeLAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEEL 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1124 EQAISSVEPKVIVKEVKKVEQDPGLLKEASRLRSLLEEEKNKNVMLARELQELQDKYRAVEKQKPKVQLQERVSEIFQVH 1203
Cdd:COG1196 427 EEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGF 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1204 PETEQEILRLRAQ--LQETGSKKSCVEREVEKLLPELEVLRAQKPVVEYKEVTQEVVRHEKNPEVLR----EIDRLKAQL 1277
Cdd:COG1196 507 LEGVKAALLLAGLrgLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRatflPLDKIRARA 586
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1278 NELVNTHGRCQEQLIRLQGERDEWKRERSKVETKMVNKEVVRHEKDPVLEKEAERLRQEVREAVQKRRAAEDAVYELQNK 1357
Cdd:COG1196 587 ALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGS 666
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1358 YLLLERRRpeeqivvqevvvtqkdpkLHEEHSRLSRSLDEEVGRRRQLELEVRQLSASVEEEEAMLSFEEDRSKKLAAER 1437
Cdd:COG1196 667 RRELLAAL------------------LEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEE 728
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 157818855 1438 ELRQLTLKIQELEKRPPALQEKIIMEEVVKLEKDPDLERSTEALRRELDQ 1487
Cdd:COG1196 729 QLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
791-1566 |
1.22e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.55 E-value: 1.22e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 791 KRLIQEILGREQDQATVARLTRDLQEALQEYELRADTyrcsleptlavsapKRLRVISLKENIQAQEKNLTKAYTEVAAA 870
Cdd:TIGR02168 235 EELREELEELQEELKEAEEELEELTAELQELEEKLEE--------------LRLEVSELEEEIEELQKELYALANEISRL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 871 EQQ-QLHQLEFAKKMLEKKELNEDFQAIHSARQGSGSPAHT-KTESEVLKTQLEEERKRVAEVQRELEERRQQLLQLRTQ 948
Cdd:TIGR02168 301 EQQkQILRERLANLERQLEELEAQLEELESKLDELAEELAElEEKLEELKEELESLEAELEELEAELEELESRLEELEEQ 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 949 QPVARLEEKEVVEfyRDPQLKSNVLQASSRLEEEGKRRARLQAELEVVAQKVVHLE--------GKRKAMQPHLLTKEVT 1020
Cdd:TIGR02168 381 LETLRSKVAQLEL--QIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAElkelqaelEELEEELEELQEELER 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1021 QIERDPGLDSQVTQLHNEMQGLRGENAVLAARLEGLKDELLTLE--QKEINVKEKVVVKEVVKVEKDLEMVKAAQTLRLQ 1098
Cdd:TIGR02168 459 LEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEgfSEGVKALLKNQSGLSGILGVLSELISVDEGYEAA 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1099 IEEDAARRKGA-----KEAVAKTQARIKDLEQAISSVEP-------KVIVKEVKKVEQDPGLLKEASRLRSLLEE-EKNK 1165
Cdd:TIGR02168 539 IEAALGGRLQAvvvenLNAAKKAIAFLKQNELGRVTFLPldsikgtEIQGNDREILKNIEGFLGVAKDLVKFDPKlRKAL 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1166 NVMLAR-----ELQELQDKYRAVEKQKPKVQLQ---------------ERVSEIFqvhpETEQEILRLRAQLQETGSKKS 1225
Cdd:TIGR02168 619 SYLLGGvlvvdDLDNALELAKKLRPGYRIVTLDgdlvrpggvitggsaKTNSSIL----ERRREIEELEEKIEELEEKIA 694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1226 CVEREVEKLLPELEVLRAQKPVVEYKEVTQEvvrheknpevlREIDRLKAQLNELVNTHGRCQEQLIRLQGERDEWKRER 1305
Cdd:TIGR02168 695 ELEKALAELRKELEELEEELEQLRKELEELS-----------RQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEI 763
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1306 SKVETKMVNKEVVRHEkdpvLEKEAERLRQEVREAVQKRRAAEDAVYELQNKYLLLERRRpeeqivvqeVVVTQKDPKLH 1385
Cdd:TIGR02168 764 EELEERLEEAEEELAE----AEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEA---------ANLRERLESLE 830
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1386 EEHSRLSRSLDEEVGRRRQLELEVRQLSASVEEEEAMLSFEEDRSKKLAAERELRQLTLKiqELEKRPPALQEKIimeev 1465
Cdd:TIGR02168 831 RRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALA--LLRSELEELSEEL----- 903
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1466 vklekdPDLERSTEALRRELDQEKNRVIELHRECKGLQVEVD-LLQKTKSQEKTIYKEVIRVEKDPVLESERARvwetln 1544
Cdd:TIGR02168 904 ------RELESKRSELRRELEELREKLAQLELRLEGLEVRIDnLQERLSEEYSLTLEEAEALENKIEDDEEEAR------ 971
|
810 820
....*....|....*....|..
gi 157818855 1545 reraarqsreEDVRSLKERIDR 1566
Cdd:TIGR02168 972 ----------RRLKRLENKIKE 983
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1326-1671 |
3.39e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.89 E-value: 3.39e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1326 LEKEAERLRQEVREAVQKRRAAEDAVyELQNKYLLLERRRpeeqivvqevvvtqkdpkLHEEHSRLSRSLDEEVGRRRQL 1405
Cdd:COG1196 198 LERQLEPLERQAEKAERYRELKEELK-ELEAELLLLKLRE------------------LEAELEELEAELEELEAELEEL 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1406 ELEVRQLSASVEEEEamLSFEEDRSKKLAAERELRQLTLKIQELEKRPPALQEKIIMEEVVKLEkdpdLERSTEALRREL 1485
Cdd:COG1196 259 EAELAELEAELEELR--LELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEE----LEEELAELEEEL 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1486 DQEKNRVIELHRECKGLQVEVDLLQKTKSQEKTIYKEVIRVEKDpvLESERARVWETLNRERAARQSREEDVRSLKERID 1565
Cdd:COG1196 333 EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE--AEEELEELAEELLEALRAAAELAAQLEELEEAEE 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1566 RAEALRRswslqkardqasqdcgRLQRELRELEQQKLQKAQQLQEEGRLLSQKTESERQKAAQRSQALSQLEAAILHEKD 1645
Cdd:COG1196 411 ALLERLE----------------RLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAAL 474
|
330 340
....*....|....*....|....*.
gi 157818855 1646 KIYEKERTLRDLHTKVSREELNQETQ 1671
Cdd:COG1196 475 LEAALAELLEELAEAAARLLLLLEAE 500
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
967-1685 |
3.72e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.93 E-value: 3.72e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 967 QLKSNVLQASSRLEEEGKRRARLQAELEVVAQKVVHLEGKRKAMQpHLLTKEVTQIERdpgLDSQVTQLHNEMQGLRGEN 1046
Cdd:TIGR02168 201 QLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQ-EELKEAEEELEE---LTAELQELEEKLEELRLEV 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1047 AVLAARLEGLKDELLTL--EQKEINVKEKVVVKEVVKVEKDLEMVKAaqtlrlQIEEDAARRKGAKEAVAKTQARIKDLE 1124
Cdd:TIGR02168 277 SELEEEIEELQKELYALanEISRLEQQKQILRERLANLERQLEELEA------QLEELESKLDELAEELAELEEKLEELK 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1125 QAISSvepkvivkevkkveqdpgLLKEASRLRSLLEEEKNKNVMLARELQELQDKYRAVEKQKPK-----VQLQERVSEI 1199
Cdd:TIGR02168 351 EELES------------------LEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASlnneiERLEARLERL 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1200 FQVHPETEQEILRLRAQLQEtgSKKSCVEREVEKLLPELEVLRAQKPVVEYKEVTQEVVRHEKNpevlREIDRLKAQLNE 1279
Cdd:TIGR02168 413 EDRRERLQQEIEELLKKLEE--AELKELQAELEELEEELEELQEELERLEEALEELREELEEAE----QALDAAERELAQ 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1280 LVNTHGRCQEQLIRLQGERD---EWKRERSKVETKM-VNKEVVRHEKDPVLEKEA---ERLRQEVREAVQKRRAA----- 1347
Cdd:TIGR02168 487 LQARLDSLERLQENLEGFSEgvkALLKNQSGLSGILgVLSELISVDEGYEAAIEAalgGRLQAVVVENLNAAKKAiaflk 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1348 -----------EDAVYELQNKYLLLERRRPEEQIVVQEVVVTQKDPKLHE------EHSRLSRSLDEEVGRRRQLELEVR 1410
Cdd:TIGR02168 567 qnelgrvtflpLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKalsyllGGVLVVDDLDNALELAKKLRPGYR 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1411 QLSA---SVEEEEAML-SFEEDRSKKLAAERELRQLTLKIQELEKRPPALQEKIIM--EEVVKLEKD-PDLERSTEALRR 1483
Cdd:TIGR02168 647 IVTLdgdLVRPGGVITgGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAElrKELEELEEElEQLRKELEELSR 726
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1484 ELDQEKNRVIELHRECKGLQVEVDLLQKT-KSQEKTIYKEVIRVEKDPVLESERARVWETLNRERAARQSR----EEDVR 1558
Cdd:TIGR02168 727 QISALRKDLARLEAEVEQLEERIAQLSKElTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEElkalREALD 806
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1559 SLKE-----RIDRAEALRRSWSLQKARDQASQDCGRLQRELRELEQQKLQKAQQLQEEGRLLSQKTEserqKAAQRSQAL 1633
Cdd:TIGR02168 807 ELRAeltllNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELES----ELEALLNER 882
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|...
gi 157818855 1634 SQLEAAILHEKDKIYEKERTLRDLHTKVSR-EELNQETQTRETNLSTKICILE 1685
Cdd:TIGR02168 883 ASLEEALALLRSELEELSEELRELESKRSElRRELEELREKLAQLELRLEGLE 935
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1087-1695 |
5.76e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 68.24 E-value: 5.76e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1087 EMVKAAQTLRLQIEEDAARRKGAKEAVAKTQARIKDLEQAISSVEPKVIVKEVKKVEQDPGLLKEASRLRSLLEEEKNKN 1166
Cdd:PTZ00121 1209 EEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEE 1288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1167 VMLARELQELQDKyRAVEKQKPKVQLQERVSEIFQVHPETEQEILRLRAQLQETGSKKSCVEREVEKLLPELEVLRAQKP 1246
Cdd:PTZ00121 1289 KKKADEAKKAEEK-KKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAE 1367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1247 VVEYK--EVTQEVVRHEKNPEVLREIDRLKAQLNElvntHGRCQEQLIRLQGERDEWKRERSKVETKM----VNKEVVRH 1320
Cdd:PTZ00121 1368 AAEKKkeEAKKKADAAKKKAEEKKKADEAKKKAEE----DKKKADELKKAAAAKKKADEAKKKAEEKKkadeAKKKAEEA 1443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1321 EKDPVLEKEAERLR---------QEVREAVQKRRAAEDAVYELQNKYLLLERRRPEEQIVVQEVVVTQKDPKLHEEHSRL 1391
Cdd:PTZ00121 1444 KKADEAKKKAEEAKkaeeakkkaEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKK 1523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1392 SRSLDEEVGRRRQLEL----------------EVRQLSASVEEEEAMLSfEEDRSKKLAAERELRQL-------TLKIQE 1448
Cdd:PTZ00121 1524 ADEAKKAEEAKKADEAkkaeekkkadelkkaeELKKAEEKKKAEEAKKA-EEDKNMALRKAEEAKKAeearieeVMKLYE 1602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1449 LEKRPPALQEKIIMEEVVKLE---KDPDLERSTEALRRELDQEKNRVIELHRECKGLQVEVDLLQKTKSQEKTIYKEVIR 1525
Cdd:PTZ00121 1603 EEKKMKAEEAKKAEEAKIKAEelkKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKK 1682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1526 VEKDPVLESER-ARVWETLNRERAARQSREEDVRSlKERIDRAEALRRSwSLQKARDQASQDcgrlQRELRELeqqklqk 1604
Cdd:PTZ00121 1683 AEEDEKKAAEAlKKEAEEAKKAEELKKKEAEEKKK-AEELKKAEEENKI-KAEEAKKEAEED----KKKAEEA------- 1749
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1605 aqqlqeegrllsQKTESERQKAAQRSQALSQLEAAILHEKDKIYEKERTLRDLHTKVSREELNQETQTRETNLStkicil 1684
Cdd:PTZ00121 1750 ------------KKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANII------ 1811
|
650
....*....|.
gi 157818855 1685 epETGNDMSPY 1695
Cdd:PTZ00121 1812 --EGGKEGNLV 1820
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1033-1581 |
2.49e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 65.86 E-value: 2.49e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1033 TQLHNEMQGLRGENAVLAARLEGLKDELLTLEQ--KEINVKEKVVvkevvkvekdLEMVKAAQTLRLQIEEDAARRKGAK 1110
Cdd:PRK03918 203 EEVLREINEISSELPELREELEKLEKEVKELEElkEEIEELEKEL----------ESLEGSKRKLEEKIRELEERIEELK 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1111 EAVAKTQARIKDLEQAISSVEPKVIVKEVKKVEQDP--GLLKEASRLRSLLEEeknknvmLARELQELQDKYRAVEK-QK 1187
Cdd:PRK03918 273 KEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDElrEIEKRLSRLEEEING-------IEERIKELEEKEERLEElKK 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1188 PKVQLQERVSEIFQVHpETEQEILRLRAQLQETGSKKSCveREVEKLLPELEVLRAQKpvveykevtqevvrheknPEVL 1267
Cdd:PRK03918 346 KLKELEKRLEELEERH-ELYEEAKAKKEELERLKKRLTG--LTPEKLEKELEELEKAK------------------EEIE 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1268 REIDRLKAQLNELVNTHGRCQEQLIRLQGerdewkrerSKVETKMVNKEVVRHEKDPVLEK---EAERLRQEVREAVQKR 1344
Cdd:PRK03918 405 EEISKITARIGELKKEIKELKKAIEELKK---------AKGKCPVCGRELTEEHRKELLEEytaELKRIEKELKEIEEKE 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1345 RAAEDAVYELQNKYLLLERRRPEEQIVVQEVVVTQKDPKLH-EEHSRLSRSLDEEVGRRRQLELEVRQLSASVEEEEAML 1423
Cdd:PRK03918 476 RKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNlEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELK 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1424 S-FEEDRSKKLAAERELRQLTLKI--------QELEKRPPALQEkiIMEEVVKLEKDP----DLERSTEALRRELDQEKN 1490
Cdd:PRK03918 556 KkLAELEKKLDELEEELAELLKELeelgfesvEELEERLKELEP--FYNEYLELKDAEkeleREEKELKKLEEELDKAFE 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1491 RVIELHRECKGLQVEVDLLQKTKSQEKtiYKEVirVEKDPVLESERARVWETLNRERAARQSREEDVRSLKERID-RAEA 1569
Cdd:PRK03918 634 ELAETEKRLEELRKELEELEKKYSEEE--YEEL--REEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEeREKA 709
|
570
....*....|..
gi 157818855 1570 LRRSWSLQKARD 1581
Cdd:PRK03918 710 KKELEKLEKALE 721
|
|
| Plectin |
pfam00681 |
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous ... |
1853-1891 |
1.07e-09 |
|
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous pemphigoid antigen.
Pssm-ID: 459901 Cd Length: 39 Bit Score: 55.41 E-value: 1.07e-09
10 20 30
....*....|....*....|....*....|....*....
gi 157818855 1853 LLEAQAATGGIVDLLSRERYSVHKAVEQGLIENTSTQRL 1891
Cdd:pfam00681 1 LLEAQAATGGIIDPVTGERLSVEEAVKRGLIDPETAQKL 39
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1147-1674 |
3.03e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 62.47 E-value: 3.03e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1147 GLLKEASRLRSLLEEEKNKnvmlARELQELQDKYRAVEKQKpKVQLQERVSEIFQVHPETEQEILRLRAQLQETG-SKKS 1225
Cdd:PTZ00121 1098 GKAEEAKKTETGKAEEARK----AEEAKKKAEDARKAEEAR-KAEDARKAEEARKAEDAKRVEIARKAEDARKAEeARKA 1172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1226 CVEREVEKLLPELEVLRAQKpVVEYKEVTQevVRHEKNPEVLREIDRLKAQLNELVNTHGRCQEQLIRLQGERDEWKRER 1305
Cdd:PTZ00121 1173 EDAKKAEAARKAEEVRKAEE-LRKAEDARK--AEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEER 1249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1306 SKVETKMVNKEVVRHEKDPVLEKEAERLRQ--EVREAVQKRRAAEDAVYELQNKYLLLERRRPEEQIVVQEVVVTQKDPK 1383
Cdd:PTZ00121 1250 NNEEIRKFEEARMAHFARRQAAIKAEEARKadELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKK 1329
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1384 LHEEHSRLSRSLDEEV-GRRRQLELEVRQLSASVEEEEAMLSFEEDRSKKLAAERELRQLTLKIQELEKRppALQEKIIM 1462
Cdd:PTZ00121 1330 KADAAKKKAEEAKKAAeAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKK--AEEDKKKA 1407
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1463 EEVVKLE----KDPDLERSTEALRREldQEKNRVIELHRECKGLQVEVDllQKTKSQEKTIYKEVIRVEKDPVLESERAR 1538
Cdd:PTZ00121 1408 DELKKAAaakkKADEAKKKAEEKKKA--DEAKKKAEEAKKADEAKKKAE--EAKKAEEAKKKAEEAKKADEAKKKAEEAK 1483
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1539 VWETLNRERAARQSREEDVRSLKERIDRAEALRRSWSLQKARDQASQDCGRLQRELRELEQQKLQKAQQLQEEGRLLSQ- 1617
Cdd:PTZ00121 1484 KADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEk 1563
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 157818855 1618 -------KTESERQKAAQRSQALSQLEAAILHEKDKIYEKERTLRDLHTKVSREELNQETQTRE 1674
Cdd:PTZ00121 1564 kkaeeakKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKK 1627
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1153-1651 |
3.82e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 61.98 E-value: 3.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1153 SRLRSLLEEEKNKNVM-----LARELQELQDKYRAVEKQKPK-VQLQERVSEIFQVHPETEQEILRLRAQLQETGSKKSC 1226
Cdd:PRK02224 190 DQLKAQIEEKEEKDLHerlngLESELAELDEEIERYEEQREQaRETRDEADEVLEEHEERREELETLEAEIEDLRETIAE 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1227 VEREVEKLLPELEVLRAQkpvveykevtqevvrheknpevlreIDRLKAQLNELVNTHGRCQEQLIRLQGERDEWKRERS 1306
Cdd:PRK02224 270 TEREREELAEEVRDLRER-------------------------LEELEEERDDLLAEAGLDDADAEAVEARREELEDRDE 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1307 KVETKMVNKEVVRHEKdpvlEKEAERLRQEVR----EAVQKRRAAEDAVYELQNKYLLLERRRPEEQIVVQEVVVTQK-- 1380
Cdd:PRK02224 325 ELRDRLEECRVAAQAH----NEEAESLREDADdleeRAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRErf 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1381 -----DPKLHEEHSRLSRS-LDEEVGRRRQLELEVRQLSASVEEEEAML-------------------SFEEDRSKKLAA 1435
Cdd:PRK02224 401 gdapvDLGNAEDFLEELREeRDELREREAELEATLRTARERVEEAEALLeagkcpecgqpvegsphveTIEEDRERVEEL 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1436 ERELRQLTLKIQELEKRPPALqekiimEEVVKLEKDPD-LERSTEALRRELDQEKNRVIELHRECKGLQVEVDLLQkTKS 1514
Cdd:PRK02224 481 EAELEDLEEEVEEVEERLERA------EDLVEAEDRIErLEERREDLEELIAERRETIEEKRERAEELRERAAELE-AEA 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1515 QEKTIYKEVIRVEKDPVLEserarVWETLNRERAArqsreedvrsLKERIDRAEALRrswSLQKARDQASQDCGRLQ--- 1591
Cdd:PRK02224 554 EEKREAAAEAEEEAEEARE-----EVAELNSKLAE----------LKERIESLERIR---TLLAAIADAEDEIERLRekr 615
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1592 RELRELEQQKLQKAQQLQEEGRLLSQKTESERQKAAQrsQALSQLEAAILHEKDKIYEKE 1651
Cdd:PRK02224 616 EALAELNDERRERLAEKRERKRELEAEFDEARIEEAR--EDKERAEEYLEQVEEKLDELR 673
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1148-1452 |
7.02e-09 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 60.91 E-value: 7.02e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1148 LLKEASRLRSLLEEEKNKNVMLARELQELQDKYRAV---EKQKPKVQLQERVSEIFQVHpetEQEILRLRAQLQETGSKK 1224
Cdd:pfam17380 308 KAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAmerERELERIRQEERKRELERIR---QEEIAMEISRMRELERLQ 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1225 SCVEREVEKLLPELEVLRAQKPVVEYKE-------VTQEVVRHEKNPEVLREIDRLKAQ----LNELVNTHGRCQEQLIR 1293
Cdd:pfam17380 385 MERQQKNERVRQELEAARKVKILEEERQrkiqqqkVEMEQIRAEQEEARQREVRRLEEErareMERVRLEEQERQQQVER 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1294 LQGERDEWKRERSKVETKMVNKEVVRHEKDPVLEKEAERLRQEVREAVQKRRAAEDAVYELQNKYLLLERRRpeeqivvq 1373
Cdd:pfam17380 465 LRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRR-------- 536
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 157818855 1374 evvvtqkdpKLHEEhsrlsrsldeevgRRRQLELEVRQlsasvEEEEAMLSFEEDRSKKLAAERElRQLTLKIQELEKR 1452
Cdd:pfam17380 537 ---------EAEEE-------------RRKQQEMEERR-----RIQEQMRKATEERSRLEAMERE-REMMRQIVESEKA 587
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1097-1657 |
8.12e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 60.85 E-value: 8.12e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1097 LQIEEDAARRKGAKEA-VAKTQARIKDLEQAISSVEPKVIVKEVkkveqdpgLLKEASRLRSLLEEEKNKNVMLARELQE 1175
Cdd:PRK03918 185 IKRTENIEELIKEKEKeLEEVLREINEISSELPELREELEKLEK--------EVKELEELKEEIEELEKELESLEGSKRK 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1176 LQDKYRAVEKQKPKV-----QLQERVSEIFQVHPETEqEILRLRAQLQETGSKKSCVEREVEKLLPELEVLRAQKPVVEY 1250
Cdd:PRK03918 257 LEEKIRELEERIEELkkeieELEEKVKELKELKEKAE-EYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEE 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1251 KEVTQEVVRhEKNPEVLREIDRLKAQLNELvnthgrcqEQLIRLQGERDEWKRERSKVETKMVNKEVVRHEKDPV-LEKE 1329
Cdd:PRK03918 336 KEERLEELK-KKLKELEKRLEELEERHELY--------EEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEeIEEE 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1330 AERLRQEVREAVQKRRAAEDAVYELQNKylllERRRPEEQIVVQEVVVTQKDPKLHEEHSRLSRSLDEEVGRRRQLELEV 1409
Cdd:PRK03918 407 ISKITARIGELKKEIKELKKAIEELKKA----KGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKEL 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1410 RQLSASVEEEEAMLSFE---------EDRSKKLAAErELRQLTLKIQELEKRPPALQEKIIMEEVvKLEKDPDLERSTEA 1480
Cdd:PRK03918 483 RELEKVLKKESELIKLKelaeqlkelEEKLKKYNLE-ELEKKAEEYEKLKEKLIKLKGEIKSLKK-ELEKLEELKKKLAE 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1481 LRRELDQEKNRVIELHRECKGLQVE-VDLLQKTKSQEKTIYKEVIRVeKDPVLESERarvwetlnreraarqsREEDVRS 1559
Cdd:PRK03918 561 LEKKLDELEEELAELLKELEELGFEsVEELEERLKELEPFYNEYLEL-KDAEKELER----------------EEKELKK 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1560 LKERIDRAEAlrrswslqkardqasqdcgrlqrELRELEQQKLQKAQQLQEEGRLLSQKT-ESERQKAAQRSQALSQLEA 1638
Cdd:PRK03918 624 LEEELDKAFE-----------------------ELAETEKRLEELRKELEELEKKYSEEEyEELREEYLELSRELAGLRA 680
|
570
....*....|....*....
gi 157818855 1639 AILHEKDKIYEKERTLRDL 1657
Cdd:PRK03918 681 ELEELEKRREEIKKTLEKL 699
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1148-1475 |
2.60e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 59.31 E-value: 2.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1148 LLKEASRLRSLLEEEKNKNV---MLARELQELQDKYRAVEKQ---KPKVQLQERVSEIFQVHPETEQEILRLRAQLQETG 1221
Cdd:TIGR02169 192 IIDEKRQQLERLRREREKAEryqALLKEKREYEGYELLKEKEaleRQKEAIERQLASLEEELEKLTEEISELEKRLEEIE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1222 SKKSCVEREVEKLLPElEVLRAQKpvvEYKEVTQEVVRHEKNPEVL-REIDRLKAQLNELVNTHGRCQEQLIRLQGERDE 1300
Cdd:TIGR02169 272 QLLEELNKKIKDLGEE-EQLRVKE---KIGELEAEIASLERSIAEKeRELEDAEERLAKLEAEIDKLLAEIEELEREIEE 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1301 WKRERSKVETKMVNKEVVRHEKDPVLEKEAERLRQEVREAVQKRRAAEDAVYELQnkylllERRRPEEQIVVQEVVVTQK 1380
Cdd:TIGR02169 348 ERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREIN------ELKRELDRLQEELQRLSEE 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1381 DPKLHEEHSRLSRSLDEEVGRRRQLELEVRQLSASVEEEEAMLSFEEDRSKKLAA-----ERELRQLTLKIQELEKRPPA 1455
Cdd:TIGR02169 422 LADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEeydrvEKELSKLQRELAEAEAQARA 501
|
330 340
....*....|....*....|
gi 157818855 1456 LQEKIIMEEVVKLEKDPDLE 1475
Cdd:TIGR02169 502 SEERVRGGRAVEEVLKASIQ 521
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1205-1586 |
2.99e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.18 E-value: 2.99e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1205 ETEQEILRLRAQLQEtgskkscVEREVEKLlpELEVLRAQKpvveYKEVTQEVVRHEKNpEVLREIDRLKAQLNELvnth 1284
Cdd:COG1196 183 ATEENLERLEDILGE-------LERQLEPL--ERQAEKAER----YRELKEELKELEAE-LLLLKLRELEAELEEL---- 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1285 grcQEQLIRLQGERDEWKRERSKVETKMVNKEVVRHEkdpvLEKEAERLRQEVREAVQKRRAAEdavyelQNKYLLLERR 1364
Cdd:COG1196 245 ---EAELEELEAELEELEAELAELEAELEELRLELEE----LELELEEAQAEEYELLAELARLE------QDIARLEERR 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1365 RpeeqivvqevvvtqkdpklheehsRLSRSLDEEVGRRRQLELEVRQLSASVEEEEAMLsfEEDRSKKLAAERELRQLTL 1444
Cdd:COG1196 312 R------------------------ELEERLEELEEELAELEEELEELEEELEELEEEL--EEAEEELEEAEAELAEAEE 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1445 KIQELEKRPPALQEKIIMEEVVKLEKDPDLERSTEALRRELDQEKNRVIELHRECKGLQVEVDLLQKTKSQEKTIYKEVI 1524
Cdd:COG1196 366 ALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALE 445
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 157818855 1525 RVEKDpVLESERARVWETLNRERAARQSREEDVRSLKERIDRAEALRRSWSLQKARDQASQD 1586
Cdd:COG1196 446 EAAEE-EAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGF 506
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1087-1421 |
3.32e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.93 E-value: 3.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1087 EMVKAAQTLRLQIEEDAARRKGAKEAVAKTQARIKDLEQAISSVEPKvivkevkkveqdpgLLKEASRLRSLLEEEKNKn 1166
Cdd:TIGR02169 227 ELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQL--------------LEELNKKIKDLGEEEQLR- 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1167 vmLARELQELQDKYRAVE-----KQKPKVQLQERVSEIFQVHPETEQEILRLRAQLQETGSKKSCVEREVEKLLPELEVL 1241
Cdd:TIGR02169 292 --VKEKIGELEAEIASLErsiaeKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDL 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1242 RAQkpvVEYKEVTQEVVRhEKNPEVLREIDRLKAQLNELVNTHGRCQEQLIRLQGERDEWKRERSKVETKMVNKEVVRHE 1321
Cdd:TIGR02169 370 RAE---LEEVDKEFAETR-DELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKED 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1322 KDpvleKEAERLRQEVREAVQKRRAAEDAVYELQNKYLLLERRRpeeqivvqevvvtqkdpklheehSRLSRSLDEEVGR 1401
Cdd:TIGR02169 446 KA----LEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKEL-----------------------SKLQRELAEAEAQ 498
|
330 340
....*....|....*....|
gi 157818855 1402 RRQLELEVRQLSASVEEEEA 1421
Cdd:TIGR02169 499 ARASEERVRGGRAVEEVLKA 518
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
974-1495 |
8.91e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 57.36 E-value: 8.91e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 974 QASSRLEEEGKRR---ARLQAELEVVAQKVVHLEGKRKAMQphlltkevtqiERDPGLDSQVTQLHNEMQGLRGENAVLA 1050
Cdd:PRK02224 238 EADEVLEEHEERReelETLEAEIEDLRETIAETEREREELA-----------EEVRDLRERLEELEEERDDLLAEAGLDD 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1051 ARLEGLKDELLTLEQK--EINVKEKVVVKEVVKVEKDLEMVKA--------AQTLRLQIEEDAARRKGAKEAVAKTQARI 1120
Cdd:PRK02224 307 ADAEAVEARREELEDRdeELRDRLEECRVAAQAHNEEAESLREdaddleerAEELREEAAELESELEEAREAVEDRREEI 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1121 KDLEQAISSVEPKVIVKevkkveqdPGLLKEASRLRSLLEEEKNKnvmLARELQELQDKYRAVEkqkpkvqlqERVSEIF 1200
Cdd:PRK02224 387 EELEEEIEELRERFGDA--------PVDLGNAEDFLEELREERDE---LREREAELEATLRTAR---------ERVEEAE 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1201 QVH-----PETEQEIlrlraqlqeTGSKKSCV----EREVEKLLPELEVLRAQKpvveyKEVTQEVVRHEKNPEVLREID 1271
Cdd:PRK02224 447 ALLeagkcPECGQPV---------EGSPHVETieedRERVEELEAELEDLEEEV-----EEVEERLERAEDLVEAEDRIE 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1272 RLKAQ---LNELVNTHgrcqEQLIRLQGERDEWKRER-SKVETKMVNKEVVRHEKdpvlEKEAERLRQEVREAVQKRRAA 1347
Cdd:PRK02224 513 RLEERredLEELIAER----RETIEEKRERAEELRERaAELEAEAEEKREAAAEA----EEEAEEAREEVAELNSKLAEL 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1348 EDAVYELQNKYLLLERRRPEEQIVVqevvvtqkdpKLHEEHSRLSRSLDEEVGRRRQLELEVRQLSASVEEEeamlSFEE 1427
Cdd:PRK02224 585 KERIESLERIRTLLAAIADAEDEIE----------RLREKREALAELNDERRERLAEKRERKRELEAEFDEA----RIEE 650
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 157818855 1428 DRSKKLAAERELRQLTLKIQELEKRPPALQEKIIMEEvvklekdPDLERsTEALRRELDQEKNRVIEL 1495
Cdd:PRK02224 651 AREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVE-------NELEE-LEELRERREALENRVEAL 710
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1265-1598 |
1.77e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.60 E-value: 1.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1265 EVLREIDRLKAQlnelvnthGRCQEQLIRLQGERDEWKRERSKVETKmvnkevvrhekdpVLEKEAERLRQEVREAVQKR 1344
Cdd:TIGR02168 197 ELERQLKSLERQ--------AEKAERYKELKAELRELELALLVLRLE-------------ELREELEELQEELKEAEEEL 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1345 RAAEDAVYELQNKYLLLERRRPEEQIVVQEVVVTQKDpkLHEEHSRLSRSLDEEVGRRRQLELEVRQLSASVEEEEAMLs 1424
Cdd:TIGR02168 256 EELTAELQELEEKLEELRLEVSELEEEIEELQKELYA--LANEISRLEQQKQILRERLANLERQLEELEAQLEELESKL- 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1425 fEEDRSKKLAAERELRQLTLKIQELEKRPPALQEKIIMEEVVKLEKDPDLERSTEA---LRRELDQEKNRVIELHRECKG 1501
Cdd:TIGR02168 333 -DELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKvaqLELQIASLNNEIERLEARLER 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1502 LQVEVDLLQKTKSQEktiykeviRVEKDPVLESERARVWETLNRERAARQSREEDVRSLKERIDRAEALrrswsLQKARD 1581
Cdd:TIGR02168 412 LEDRRERLQQEIEEL--------LKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEE-----AEQALD 478
|
330
....*....|....*..
gi 157818855 1582 QASQDCGRLQRELRELE 1598
Cdd:TIGR02168 479 AAERELAQLQARLDSLE 495
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1042-1451 |
1.79e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 56.61 E-value: 1.79e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1042 LRGENAVLAARLEGLKDELLTLeQKEINVKEKVVVKEVVKVEKDLEMVKAAQTLRLQIEEDAARrkgAKEAVAKTQARIK 1121
Cdd:TIGR02169 672 EPAELQRLRERLEGLKRELSSL-QSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEK---LKERLEELEEDLS 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1122 DLEQAISSVEpkvivkevkkveqdpgllKEASRLRSLLEEEKNKNVMLARELQELQDKYRavekqkpkvqlQERVSEIFQ 1201
Cdd:TIGR02169 748 SLEQEIENVK------------------SELKELEARIEELEEDLHKLEEALNDLEARLS-----------HSRIPEIQA 798
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1202 VHPETEQEILRLRAQLQEtgskkscVEREVEKLLPELEVLRAQKpvvEYKEVTQEVVRHEKNpEVLREIDRLKAQLNELV 1281
Cdd:TIGR02169 799 ELSKLEEEVSRIEARLRE-------IEQKLNRLTLEKEYLEKEI---QELQEQRIDLKEQIK-SIEKEIENLNGKKEELE 867
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1282 NTHGRCQEQLIRLQGERDEWKRERSKVETKMVNKEVVRHEkdpvLEKEAERLRQEVREAVQKRRAAEDAVYELqnkylll 1361
Cdd:TIGR02169 868 EELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEE----LEAQIEKKRKRLSELKAKLEALEEELSEI------- 936
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1362 errrpeeqivvqevvvtQKDPKLHEEHSRLSRSLDEEVGRRRQLELEVRQLS-----ASVEEEEAMLSFEEDRSKKLAAE 1436
Cdd:TIGR02169 937 -----------------EDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEpvnmlAIQEYEEVLKRLDELKEKRAKLE 999
|
410
....*....|....*
gi 157818855 1437 RELRQLTLKIQELEK 1451
Cdd:TIGR02169 1000 EERKAILERIEEYEK 1014
|
|
| SPEC |
cd00176 |
Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members ... |
228-358 |
2.14e-07 |
|
Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Pssm-ID: 238103 [Multi-domain] Cd Length: 213 Bit Score: 53.60 E-value: 2.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 228 LYTHLQGCTKQLGALADQQGRILQQDwsDLMPDPAGVRREYEHFK--QHELLAQEQSINQLEDDAERMVELGHPAIGPIQ 305
Cdd:cd00176 1 KLQQFLRDADELEAWLSEKEELLSST--DYGDDLESVEALLKKHEalEAELAAHEERVEALNELGEQLIEEGHPDAEEIQ 78
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 157818855 306 AHQEALKMEWQNFLNLCICQESQLQHVEDYRRFQEEADSASQTLAKLSSNLDT 358
Cdd:cd00176 79 ERLEELNQRWEELRELAEERRQRLEEALDLQQFFRDADDLEQWLEEKEAALAS 131
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
920-1581 |
2.24e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 56.30 E-value: 2.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 920 QLEEERKRVAEVQreleerrqqllqlrtqqpvaRLEEKEVVEFYRDPQlksnvlqaSSRLEEEGKRRARLQAELEVVAQK 999
Cdd:PTZ00121 1231 KAEEAKKDAEEAK--------------------KAEEERNNEEIRKFE--------EARMAHFARRQAAIKAEEARKADE 1282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1000 VVHLEGKRKAMQPHlLTKEVTQIErdpgldsqvtqlhnEMQglrgENAVLAARLEGLKDELLTLEQKEINVKEKVVVKEV 1079
Cdd:PTZ00121 1283 LKKAEEKKKADEAK-KAEEKKKAD--------------EAK----KKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKK 1343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1080 VKVEKDLEMVKAAQTLRLQIEEDAARRKGAKEAVAKTQARIKDLEQAISSVEPKVIVKEVKKVEQDpglLKEAsrlrsll 1159
Cdd:PTZ00121 1344 AAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADE---LKKA------- 1413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1160 EEEKNKnvmlARELQELQDKYRAVEKQKPKVQLQERVSEIFQVHPEteqeilrlrAQLQETGSKKSCVEREVEKLLPELE 1239
Cdd:PTZ00121 1414 AAAKKK----ADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEE---------AKKAEEAKKKAEEAKKADEAKKKAE 1480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1240 vlrAQKPVVEYKEVTQEVvrhEKNPEVLREIDRLKAQLNELvnthgRCQEQlirlQGERDEWKRERSKVETKMVNKEVVR 1319
Cdd:PTZ00121 1481 ---EAKKADEAKKKAEEA---KKKADEAKKAAEAKKKADEA-----KKAEE----AKKADEAKKAEEAKKADEAKKAEEK 1545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1320 HEKDPVLEKEAERLRQEVREAVQKRRAAEDAVYELQNKYLL--LERRRPEEQIVVQEVVVTQKDPKLHEEHSrlSRSLDE 1397
Cdd:PTZ00121 1546 KKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAkkAEEARIEEVMKLYEEEKKMKAEEAKKAEE--AKIKAE 1623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1398 EVGRRRQLELEVRQLSASVEEEEAmlsfEEDRSKKLAAERELRQLTLKIQELEKRPPALQEKIIMEEVVK----LEKDPD 1473
Cdd:PTZ00121 1624 ELKKAEEEKKKVEQLKKKEAEEKK----KAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKaaeaLKKEAE 1699
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1474 LERSTEALRRELDQEKNRVIELHRECKGLQVEVDLLQKTKSQEKTiykeviRVEKDPVLESERARVWE-TLNRERAARQS 1552
Cdd:PTZ00121 1700 EAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKK------KAEEAKKDEEEKKKIAHlKKEEEKKAEEI 1773
|
650 660
....*....|....*....|....*....
gi 157818855 1553 REEDVRSLKERIDRAEALRRSWSLQKARD 1581
Cdd:PTZ00121 1774 RKEKEAVIEEELDEEDEKRRMEVDKKIKD 1802
|
|
| PLEC |
smart00250 |
Plectin repeat; |
1889-1926 |
2.42e-07 |
|
Plectin repeat;
Pssm-ID: 197605 Cd Length: 38 Bit Score: 48.63 E-value: 2.42e-07
10 20 30
....*....|....*....|....*....|....*...
gi 157818855 1889 QRLLNAQKAFTGIEDPVTRKRLSVGEAIQKGWMPQESV 1926
Cdd:smart00250 1 QRLLEAQSAIGGIIDPETGQKLSVEEALRRGLIDPETG 38
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
726-1633 |
3.67e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.46 E-value: 3.67e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 726 ALTDRYHSVGDQLDLREKILQDASLTHQQLKNSRDNLSSWLEQLPHHRVQPS--------DGPSQIAYKLQAQKRLIQEI 797
Cdd:TIGR02169 83 KNDDGKFPDELEVVRRLKVTDDGKYSYYYLNGQRVRLSEIHDFLAAAGIYPEgynvvlqgDVTDFISMSPVERRKIIDEI 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 798 LGreqdqatVARLTRDLQEALQEYElradTYRCSLEPTLAVSAPKRLRVISLKEniqaqEKNLTKAYTEVaaaeQQQLHQ 877
Cdd:TIGR02169 163 AG-------VAEFDRKKEKALEELE----EVEENIERLDLIIDEKRQQLERLRR-----EREKAERYQAL----LKEKRE 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 878 LEFAKKMLEKKELNEDFQAIHSARQGsgspahTKTESEVLKTQLEEERKRVAEVQRELEERRQQLLQLRTQQPVARLEEK 957
Cdd:TIGR02169 223 YEGYELLKEKEALERQKEAIERQLAS------LEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKI 296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 958 EVVEFYRDpQLKSNVLQASSRLEEEGKRRARLQAELEVVAQKVVHLEGKrkamqphlltKEVTQIERDPgLDSQVTQLHN 1037
Cdd:TIGR02169 297 GELEAEIA-SLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELERE----------IEEERKRRDK-LTEEYAELKE 364
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1038 EMQGLRGENAVLAARLEGLKDELLTLeQKEINVKEKVVVKEVVKVEKDLEMVKAAQTLRLQIEEDAARrkgAKEAVAKTQ 1117
Cdd:TIGR02169 365 ELEDLRAELEEVDKEFAETRDELKDY-REKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAG---IEAKINELE 440
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1118 ARIKDLEQAISSVEpkvivkevkkveqdpgllKEASRLRSLLEEEKNKNVMLARELQELQDKYRAVEKQKPKVQLQERVS 1197
Cdd:TIGR02169 441 EEKEDKALEIKKQE------------------WKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARAS 502
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1198 EIFQVHPETEQEILR--------LRAQLQETGSK------------------------KSCVEREVEK------LLPELE 1239
Cdd:TIGR02169 503 EERVRGGRAVEEVLKasiqgvhgTVAQLGSVGERyataievaagnrlnnvvveddavaKEAIELLKRRkagratFLPLNK 582
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1240 VLRAQKP---------------VVEYKEVTQEVVRHE-KNPEVLREIDRLKAQLNE--LVNTHGRCQEQLIRLQGERDEW 1301
Cdd:TIGR02169 583 MRDERRDlsilsedgvigfavdLVEFDPKYEPAFKYVfGDTLVVEDIEAARRLMGKyrMVTLEGELFEKSGAMTGGSRAP 662
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1302 KRERSKVETKMVNKEVVRHEKDPvLEKEAERLRQEVREAVQKRRAAEDAVYELQNKYLLLERRRPEeqivvqevvvtqkd 1381
Cdd:TIGR02169 663 RGGILFSRSEPAELQRLRERLEG-LKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQ-------------- 727
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1382 pkLHEEHSRLSRSLDEevgrrrqLELEVRQLSASVEEEEAMLsfEEDRSKKLAAERELRQLTLKIQELEKRPPALQEKII 1461
Cdd:TIGR02169 728 --LEQEEEKLKERLEE-------LEEDLSSLEQEIENVKSEL--KELEARIEELEEDLHKLEEALNDLEARLSHSRIPEI 796
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1462 MEEVVKLEKD-PDLERSTEALRRELDQEKNRVIELHRECKGLQVEVDLLQ-KTKSQEKTIYKEVIRVEK-DPVLESERAR 1538
Cdd:TIGR02169 797 QAELSKLEEEvSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKeQIKSIEKEIENLNGKKEElEEELEELEAA 876
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1539 VWETLNRE---RAARQSREEDVRSLKERIDRAEalrrsWSLQKARDQASQDCGRLQRELRELEQQKLQKAQQLQEEGRLL 1615
Cdd:TIGR02169 877 LRDLESRLgdlKKERDELEAQLRELERKIEELE-----AQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEEL 951
|
970
....*....|....*....
gi 157818855 1616 S-QKTESERQKAAQRSQAL 1633
Cdd:TIGR02169 952 SlEDVQAELQRVEEEIRAL 970
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1261-1573 |
4.07e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.46 E-value: 4.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1261 EKNPEVLREIDRLKAQLNelvnthgRCQEQLIRLQGERDEWKRERSKVETKMVNKEVVRHEKDPVLEKEAERLRQEVREA 1340
Cdd:TIGR02169 674 AELQRLRERLEGLKRELS-------SLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDL 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1341 VQKRRAAEDAVYELQNKYLLLERRRPEEQIVVQEVVVTQKDP-------------KLHEEHSRLSRSLDEEVGRRRQLEL 1407
Cdd:TIGR02169 747 SSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLshsripeiqaelsKLEEEVSRIEARLREIEQKLNRLTL 826
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1408 EVRQLSASVEEEEAMLSFEEDRSKKLAAERELRQLTLKIQELEKRPPALQEKIIMEEVVKLEKDPD--------LERSTE 1479
Cdd:TIGR02169 827 EKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDeleaqlreLERKIE 906
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1480 ALRRELDQEKNRVIELHRECKGLQVEVDLLQKTKSQEK----------TIYKEVIRVEKD-----PV---LESERARVWE 1541
Cdd:TIGR02169 907 ELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEeipeeelsleDVQAELQRVEEEiralePVnmlAIQEYEEVLK 986
|
330 340 350
....*....|....*....|....*....|..
gi 157818855 1542 TLNRERAARQSREEDVRSLKERIDRAEALRRS 1573
Cdd:TIGR02169 987 RLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
668-1312 |
6.28e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.94 E-value: 6.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 668 LQERVSELQRQRKELlQQQACVLGLHRQLKAAEhacgalqnnfqefcqdlprQQRQVRALTDRYHSVGDQLDLREKILQD 747
Cdd:COG1196 191 LEDILGELERQLEPL-ERQAEKAERYRELKEEL-------------------KELEAELLLLKLRELEAELEELEAELEE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 748 ASLTHQQLKNSRDNLSSWLEQLPHHRVQPSDgpsQIAYKLQAQKRLIQEILGREQDQATVARLTRDLQEALQEYELRADT 827
Cdd:COG1196 251 LEAELEELEAELAELEAELEELRLELEELEL---ELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 828 yrcsleptlavsapKRLRVISLKENIQAQEKNLTKAYTEVAAAEQQQLHQLEfaKKMLEKKELNEDFQAIHSARQGSGSP 907
Cdd:COG1196 328 --------------LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEE--ALLEAEAELAEAEEELEELAEELLEA 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 908 AHTKTESEVLKTQLEEERKRVAEVQRELEERRQQLLQLRTQQPVARLEEKEVVEfyrdpQLKSNVLQASSRLEEEGKRRA 987
Cdd:COG1196 392 LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALE-----EAAEEEAELEEEEEALLELLA 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 988 RLQAELEVVAQKVVHLEGKRKAMQPHLLTKEvTQIERDPGLDSQVTQLHnemqglrgeNAVLAARLEGLKDELLTLEQKE 1067
Cdd:COG1196 467 ELLEEAALLEAALAELLEELAEAAARLLLLL-EAEADYEGFLEGVKAAL---------LLAGLRGLAGAVAVLIGVEAAY 536
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1068 INVKEKVVVKEVVKVEkdlemVKAAQTLRLQIEEDAARRKGAKEAVAKTQARIKDLEQAISSVEPKVIVKEVKKVEQDPG 1147
Cdd:COG1196 537 EAALEAALAAALQNIV-----VEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREA 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1148 LLKEASRLRSLLEEEKNKNVMLARELQELQDKYRAVEKQKPKVQLQERVSEIFQVHPETEQEILRLRAQLQETGSKKSCV 1227
Cdd:COG1196 612 DARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEE 691
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1228 EREVEKLLPELEVLRAQKPVVEYKEVTQEVVRHEKNPEVLREIDRLKAQLNELVNTHGRCQEQLIRLQGERDEWKRERSK 1307
Cdd:COG1196 692 ELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELER 771
|
....*
gi 157818855 1308 VETKM 1312
Cdd:COG1196 772 LEREI 776
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1384-1699 |
6.48e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.68 E-value: 6.48e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1384 LHEEHSRLSRSLDEEVGRRRQLELEVRQLSASVEEeeAMLSFEEDRSKKLAAERELRQLTLKIQELEKRppalqekiIME 1463
Cdd:TIGR02168 237 LREELEELQEELKEAEEELEELTAELQELEEKLEE--LRLEVSELEEEIEELQKELYALANEISRLEQQ--------KQI 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1464 EVVKLEkdpDLERSTEALRRELDQEKNRVIELHRECKGLQVEVDLLQKtksqektiykevirvekdpVLESERARvwetL 1543
Cdd:TIGR02168 307 LRERLA---NLERQLEELEAQLEELESKLDELAEELAELEEKLEELKE-------------------ELESLEAE----L 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1544 NRERAARQSREEDVRSLKERIDRAEALRRSWSLQKARDQAsqdcgRLQRELRELEQQKLQKAQQLQEEGRLLSQKTESER 1623
Cdd:TIGR02168 361 EELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNN-----EIERLEARLERLEDRRERLQQEIEELLKKLEEAEL 435
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 157818855 1624 QKAAQRSQALSQLEAAILHEKDKIYEKERTLRDLHTKVSREElnQETQTRETNLSTKICILEPETGNDMSPYEAYK 1699
Cdd:TIGR02168 436 KELQAELEELEEELEELQEELERLEEALEELREELEEAEQAL--DAAERELAQLQARLDSLERLQENLEGFSEGVK 509
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1384-1568 |
6.95e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.54 E-value: 6.95e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1384 LHEEHSRLSRSLDEEVGRRRQLELEVRQLSASVEEEEAMLSFEEDRSKKLAAERELRQLTLKIQELEKRPPALQEkiime 1463
Cdd:COG4913 615 LEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASSDDLAA----- 689
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1464 evvklekdpdLERSTEALRRELDQEKNRVIELHRECKGLQVEVDLLQKTKSQEKTIYKEVIRVEKDPVLESERARVWETL 1543
Cdd:COG4913 690 ----------LEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAAL 759
|
170 180
....*....|....*....|....*..
gi 157818855 1544 --NRERAARQSREEDVRSLKERIDRAE 1568
Cdd:COG4913 760 gdAVERELRENLEERIDALRARLNRAE 786
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1169-1657 |
2.29e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.00 E-value: 2.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1169 LARELQELQDKYRAVEKQKPKVQLQERVSEIFQVHPETEQEILRLRAQLQETGSKKScvEREVEKLLPELEVLRAqkpvv 1248
Cdd:COG4913 230 LVEHFDDLERAHEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFA--QRRLELLEAELEELRA----- 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1249 EYKEVTQEVVRHEKNPEVLR-EIDRLKAQLNEL-VNTHGRCQEQLIRLQGERDEWKRERSKVET--KMVNKEVVRHEKDp 1324
Cdd:COG4913 303 ELARLEAELERLEARLDALReELDELEAQIRGNgGDRLEQLEREIERLERELEERERRRARLEAllAALGLPLPASAEE- 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1325 vLEKEAERLRQEVREAVQKRRAAEDAVYELQNKYLLLERRRPeeqivvqevvvtqkdpKLHEEHSRLSR---SLDEEVGR 1401
Cdd:COG4913 382 -FAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELR----------------ELEAEIASLERrksNIPARLLA 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1402 RRqlelevRQLSASVEEEEAMLSF--------EEDRSKKLAAERELRQ--LTLKIQE---------LEKRPpaLQEKIIM 1462
Cdd:COG4913 445 LR------DALAEALGLDEAELPFvgelievrPEEERWRGAIERVLGGfaLTLLVPPehyaaalrwVNRLH--LRGRLVY 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1463 EEVVKLEKDPDLERS----------------TEALRRELDQEKNRVI-----ELHRECKGLQVEVDLLQKTKSQEKTIYK 1521
Cdd:COG4913 517 ERVRTGLPDPERPRLdpdslagkldfkphpfRAWLEAELGRRFDYVCvdspeELRRHPRAITRAGQVKGNGTRHEKDDRR 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1522 EVIRV--------EKDPVLESERARVWETLNRERAARQSREEDVRSLKERIDRAEALRRSWSLQKARDQASQDCGRLQRE 1593
Cdd:COG4913 597 RIRSRyvlgfdnrAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAE 676
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 157818855 1594 LRELEQQKLQKAQQLQEEGRLLSQKTESERQKAAQRSQAlSQLEAAILHEKDKIYEKERTLRDL 1657
Cdd:COG4913 677 LERLDASSDDLAALEEQLEELEAELEELEEELDELKGEI-GRLEKELEQAEEELDELQDRLEAA 739
|
|
| PLEC |
smart00250 |
Plectin repeat; |
1851-1884 |
2.78e-06 |
|
Plectin repeat;
Pssm-ID: 197605 Cd Length: 38 Bit Score: 45.55 E-value: 2.78e-06
10 20 30
....*....|....*....|....*....|....
gi 157818855 1851 QKLLEAQAATGGIVDLLSRERYSVHKAVEQGLIE 1884
Cdd:smart00250 1 QRLLEAQSAIGGIIDPETGQKLSVEEALRRGLID 34
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
473-1221 |
3.28e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.37 E-value: 3.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 473 EAVAKASRLASELQTLKQKLSTEKSRL--KNASAEHLQQGQQAPAGS-APADPQAQKLLSQMTQLDGDLGQVERQVLSWA 549
Cdd:TIGR02168 250 EAEEELEELTAELQELEEKLEELRLEVseLEEEIEELQKELYALANEiSRLEQQKQILRERLANLERQLEELEAQLEELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 550 RSPLNDSSPLKDLEGRIQSCEGTAQHLQNLGAEKEAAQQECEaflstkptgSAALQLPVVLNNVKNKYSDvhslcylyge 629
Cdd:TIGR02168 330 SKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELE---------SRLEELEEQLETLRSKVAQ---------- 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 630 kakaalgLEKQIQEADGIIQGFEATLAQegpipegsgaLQERVSELQRQRKELLQqqacvlglhrqlKAAEHACGALQNN 709
Cdd:TIGR02168 391 -------LELQIASLNNEIERLEARLER----------LEDRRERLQQEIEELLK------------KLEEAELKELQAE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 710 FQEFCQDLPRQQRQVRALTDRYHSVGDQLDLREKILQDASLTHQQLKNSRDNLSSWLEQLphhrvqpsDGPSQIAYKLQA 789
Cdd:TIGR02168 442 LEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENL--------EGFSEGVKALLK 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 790 QKRLIQEILGREQDQATV-----------------ARLTRDLQEALQEYEL--RADTYRCSLEPTLAVSAPK----RLRV 846
Cdd:TIGR02168 514 NQSGLSGILGVLSELISVdegyeaaieaalggrlqAVVVENLNAAKKAIAFlkQNELGRVTFLPLDSIKGTEiqgnDREI 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 847 ISLKENIQAQEKNLTKAYTEVAAAEQQQLHQL----EFAKKMLEKKELNEDFQAIHSA-----RQGSGSPAHTKTESEVL 917
Cdd:TIGR02168 594 LKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVlvvdDLDNALELAKKLRPGYRIVTLDgdlvrPGGVITGGSAKTNSSIL 673
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 918 KTQ--LEEERKRVAEVQRELEERRQQLLQLRTQQPVARLEEKEVVEFYRDPQLKSNVLQAS-SRLEEE----GKRRARLQ 990
Cdd:TIGR02168 674 ERRreIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDlARLEAEveqlEERIAQLS 753
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 991 AELEVVAQKVVHLEGKRKAMQPHLLTKEVTQIErdpgLDSQVTQLHNEMQGLRGENAVLAARLEGLKDELLTLEQKEINV 1070
Cdd:TIGR02168 754 KELTELEAEIEELEERLEEAEEELAEAEAEIEE----LEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESL 829
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1071 KEKVVVKEVVKVekdlEMVKAAQTLRLQIEEDAARRKGAKEAVAKTQARIKDLEQAISSVEPKVIVKEVKKVEQDPGLL- 1149
Cdd:TIGR02168 830 ERRIAATERRLE----DLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRe 905
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1150 --KEASRLRSLLEEEKNKNVMLARELQELQDKYRavekqkpkvQLQERVSEIFQVHPE---------------TEQEILR 1212
Cdd:TIGR02168 906 leSKRSELRRELEELREKLAQLELRLEGLEVRID---------NLQERLSEEYSLTLEeaealenkieddeeeARRRLKR 976
|
....*....
gi 157818855 1213 LRAQLQETG 1221
Cdd:TIGR02168 977 LENKIKELG 985
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1148-1359 |
3.86e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.22 E-value: 3.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1148 LLKEASRLRSLLEEeknknvmLARELQELQDKYRAVEKQKPKVQLQERVSEIFQVHPETEQEILRLRAQLqetgskkscv 1227
Cdd:COG4913 615 LEAELAELEEELAE-------AEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAEL---------- 677
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1228 eREVEKLLPELEVLRAQkpvveYKEVTQEVVRHEKnpevlrEIDRLKAQLNELVNTHGRCQEQLIRLQGERDEWKRERSK 1307
Cdd:COG4913 678 -ERLDASSDDLAALEEQ-----LEELEAELEELEE------ELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARL 745
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 157818855 1308 VETKMVNKEVVRHEKDPVLEKEAERLRQEVREAVQKRRAAEDAVYELQNKYL 1359
Cdd:COG4913 746 ELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFN 797
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1168-1629 |
3.96e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.08 E-value: 3.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1168 MLARELQELQDKYRAVEKQKPKVQLQE--RVSEIFQVHPETEQEILRLRAQLQETGSKKSCVEREVEKLLPELEVLRAQK 1245
Cdd:COG4717 46 MLLERLEKEADELFKPQGRKPELNLKElkELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1246 pvvEYKEVTQEVVRHEknpevlREIDRLKAQLNELVNTHGRCQEQLIRLQGERDEWKRERSKVETKMVNKEVVRHEKDPV 1325
Cdd:COG4717 126 ---QLLPLYQELEALE------AELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQD 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1326 LEKEAERLRQEVREAVQKRRAAEDAVYELQNKYLLLERRRPEEQIVVqevvvtqkdpKLHEEHSRLS--------RSLDE 1397
Cdd:COG4717 197 LAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEE----------RLKEARLLLLiaaallalLGLGG 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1398 EVGRRRQLELEVRQLSASV--------EEEEAMLSFEEDRSKKLAAERELRQLTLKIQELEKR-PPALQEKIIMEEVVKL 1468
Cdd:COG4717 267 SLLSLILTIAGVLFLVLGLlallflllAREKASLGKEAEELQALPALEELEEEELEELLAALGlPPDLSPEELLELLDRI 346
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1469 EKDPDLERSTEALRRELDQEknrviELHRECKGLQVEVDLlqktkSQEKTIYKEVIRVEKDPVLESERARVWETLNRERA 1548
Cdd:COG4717 347 EELQELLREAEELEEELQLE-----ELEQEIAALLAEAGV-----EDEEELRAALEQAEEYQELKEELEELEEQLEELLG 416
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1549 ARQSREE--DVRSLKERIDRAEALRRswSLQKARDQASQDCGRLQRELRELEQQKLQKAQQLQEEgRLLSQKTESERQKA 1626
Cdd:COG4717 417 ELEELLEalDEEELEEELEELEEELE--ELEEELEELREELAELEAELEQLEEDGELAELLQELE-ELKAELRELAEEWA 493
|
...
gi 157818855 1627 AQR 1629
Cdd:COG4717 494 ALK 496
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
870-1365 |
4.43e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 51.69 E-value: 4.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 870 AEQQQLHQLEFAKKMLEKKELNEDFQAIHSARQGSGSPAHTKTESEVLKTQLEEERKRVAEVQRELEERRQQLLQLRTQQ 949
Cdd:COG4717 53 KEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQ 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 950 PVARLEEKEVVEFYRDPQLKSNVLQassrLEEEGKRRARLQAELEVVAQKVVHLEGKRKAMQPHLLTKEVTQIERdpgLD 1029
Cdd:COG4717 133 ELEALEAELAELPERLEELEERLEE----LRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEE---LQ 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1030 SQVTQLHNEMQGLRGENAVLAARLEGLKDELLTLEQKEINVKEKVVVKEVVKVEKDLEMVKAAQTLRLQIEEDAARRKGA 1109
Cdd:COG4717 206 QRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGL 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1110 KEAVAKTQARIKDLEQAISSVEPKVIVKEVKKVEQDPGLLKEASRLRSLLEEEKNKNVMLARELQELQDKYRAVEKQKPK 1189
Cdd:COG4717 286 LALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQL 365
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1190 VQLQERVSEIFQVHPETEQEILRLRAQLQEtgskkscverEVEKLLPELEVLRAQkpVVEYKEVTQEVVRHEKNPEVLRE 1269
Cdd:COG4717 366 EELEQEIAALLAEAGVEDEEELRAALEQAE----------EYQELKEELEELEEQ--LEELLGELEELLEALDEEELEEE 433
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1270 IDRLKAQLNELVNTHGRCQEQLIRLQGERDEWKRERSKVEtkmvnkevvrhekdpvLEKEAERLRQEVREAVQKRRAAED 1349
Cdd:COG4717 434 LEELEEELEELEEELEELREELAELEAELEQLEEDGELAE----------------LLQELEELKAELRELAEEWAALKL 497
|
490
....*....|....*.
gi 157818855 1350 AVYELQNKYLLLERRR 1365
Cdd:COG4717 498 ALELLEEAREEYREER 513
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1177-1538 |
5.67e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 51.66 E-value: 5.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1177 QDKYRAVEKQKPKVQLQERVSEIFQVHPETEQEILRlRAQLQETGSKKSCVEREVEKLLPELEVLRAQKPVVEYKEVTQE 1256
Cdd:pfam17380 290 QEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKAR-QAEMDRQAAIYAEQERMAMERERELERIRQEERKRELERIRQE 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1257 vvrheknpEVLREIDRLKaqlnelvnthgrcqeQLIRLQGERDEwKRERskvetkmVNKEVVRHEKDPVLEKEAERLRQE 1336
Cdd:pfam17380 369 --------EIAMEISRMR---------------ELERLQMERQQ-KNER-------VRQELEAARKVKILEEERQRKIQQ 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1337 VREAVQKRRAAEDAVYELQNKYLLLERRRPEEQIVVQEVVVTQKDPKL--HEEHSRLSRSLDEEVGRRRQLELEVRQLSA 1414
Cdd:pfam17380 418 QKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLrqQEEERKRKKLELEKEKRDRKRAEEQRRKIL 497
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1415 SVEEEEAMLSFEEDRSKKLAAERELRQLTLKIQELEKRPPALQEKiimeevvKLEKDPDLERSTEALRRELDQEKNRVIE 1494
Cdd:pfam17380 498 EKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEER-------RKQQEMEERRRIQEQMRKATEERSRLEA 570
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 157818855 1495 LHRECKGLQVEVDLLQKTKSQE--------KTIYKEVIRVEKDPVLESERAR 1538
Cdd:pfam17380 571 MEREREMMRQIVESEKARAEYEattpittiKPIYRPRISEYQPPDVESHMIR 622
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1153-1656 |
8.83e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.07 E-value: 8.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1153 SRLRSLLEEEKNKnVMLARELQELQDKYRAVEKQKPKVQLQERVSEIFQVHPET---EQEILRLRAQLQETGSKKSCVER 1229
Cdd:COG4913 238 ERAHEALEDAREQ-IELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLellEAELEELRAELARLEAELERLEA 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1230 EVEKLLPELEVLRAQKPVVEYKEVTQevvrheknpeVLREIDRLKAQLNELVNTHGRCQEQLIRLQ----GERDEWKRER 1305
Cdd:COG4913 317 RLDALREELDELEAQIRGNGGDRLEQ----------LEREIERLERELEERERRRARLEALLAALGlplpASAEEFAALR 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1306 SKVetkmvnkevvrHEKDPVLEKEAERLRQEVREAVQKRRAAEDAVYELQNKYLLLERRR---PEEQIVVQEV-----VV 1377
Cdd:COG4913 387 AEA-----------AALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKsniPARLLALRDAlaealGL 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1378 TQKDPK-------LHEEHSR-----------LSRSL--DEEVG-------RRRQLELEVR-QLSASVEEEEAMLSFEEDR 1429
Cdd:COG4913 456 DEAELPfvgelieVRPEEERwrgaiervlggFALTLlvPPEHYaaalrwvNRLHLRGRLVyERVRTGLPDPERPRLDPDS 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1430 -SKKLA---------AERELRQLTLKI-----QELEKRPPAL-QEKIIMEEVVKLEKDP------------DLERSTEAL 1481
Cdd:COG4913 536 lAGKLDfkphpfrawLEAELGRRFDYVcvdspEELRRHPRAItRAGQVKGNGTRHEKDDrrrirsryvlgfDNRAKLAAL 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1482 RRELDQEKNRVIELHRECKGLQVEVDLLQKTKSQEKTIyKEVIRVEKD-PVLESERARvwetLNRERAARQSREEDVRSL 1560
Cdd:COG4913 616 EAELAELEEELAEAEERLEALEAELDALQERREALQRL-AEYSWDEIDvASAEREIAE----LEAELERLDASSDDLAAL 690
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1561 KERIDRAEALRRswSLQKARDQASQDCGRLQRELRELEQQKLQKAQQLQEEGRLLSQKTES---ERQKAAQRSQALSQLE 1637
Cdd:COG4913 691 EEQLEELEAELE--ELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRAlleERFAAALGDAVERELR 768
|
570
....*....|....*....
gi 157818855 1638 AAILHEKDKIYEKERTLRD 1656
Cdd:COG4913 769 ENLEERIDALRARLNRAEE 787
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
629-1221 |
8.85e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.09 E-value: 8.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 629 EKAKAALGLEKQIQEADGIIQGFEatlaqegpipegsgaLQERVSELQRQRKELLQQQACVLGLHRQLKAAEHACGALQN 708
Cdd:COG1196 210 EKAERYRELKEELKELEAELLLLK---------------LRELEAELEELEAELEELEAELEELEAELAELEAELEELRL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 709 NFQEFCQDLPRQQRQVRALTDRYHSVGDQLDLREKILQDASLTHQQLKNSRDNLSSWLEQLPhhrvqpsdgpSQIAYKLQ 788
Cdd:COG1196 275 ELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELE----------EELEELEE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 789 AQKRLIQEILGREQDQATVARLTRDLQEALQEYELRADTYRCSLEPTLAVSAPKRLRVISLKENIQAQEKNLTKAYTEVA 868
Cdd:COG1196 345 ELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELE 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 869 AAEQQQLHQLEFAKKMLEK-KELNEDFQAIHSARQGSGSPAHTKTESEVLKTQLEEERKRVAEVQRELEERRQQLLQLRT 947
Cdd:COG1196 425 ELEEALAELEEEEEEEEEAlEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYE 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 948 QQPVARLEEKEVVEFYRDPQLKSNVLQASSRLE-----EEGKRRARLQAELEVVAQKVVHLEGKRKAMQPHLLTKEVTQI 1022
Cdd:COG1196 505 GFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEaaleaALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRA 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1023 ERDPGLDSQVTQLHNEMQGLRGENAVLAARLEGLKDELLtlEQKEINVKEKVVVKEVVKVEKDLEMVKAAQTLRLQIEED 1102
Cdd:COG1196 585 RAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLL--GRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSL 662
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1103 AARRKGAKEAVAKTQARIKDLEQAISSVEPKVIVKEVKKVEQDPGLLKEASRLRSLLEEEKNKNVMLARELQELQDKYRA 1182
Cdd:COG1196 663 TGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELL 742
|
570 580 590
....*....|....*....|....*....|....*....
gi 157818855 1183 VEKQKPKVQLQERVSEIFqVHPETEQEILRLRAQLQETG 1221
Cdd:COG1196 743 EEEELLEEEALEELPEPP-DLEELERELERLEREIEALG 780
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1149-1598 |
9.86e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.54 E-value: 9.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1149 LKEASRLRSLLEEEKNKNVMLARELQELQDKYRAVEKQKPKVQLQERVSEIFQVHPETEQEILRLRAQLQEtgskkscVE 1228
Cdd:COG4717 73 LKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAE-------LP 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1229 REVEKLLPELEVLRAQKpvVEYKEVTQEVVRHEKNPEVLREIDRL--KAQLNELVNTHGRCQEQLIRLQGERDEWKRERS 1306
Cdd:COG4717 146 ERLEELEERLEELRELE--EELEELEAELAELQEELEELLEQLSLatEEELQDLAEELEELQQRLAELEEELEEAQEELE 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1307 KVEtkmvnKEVVRHEKDPVLEKEAERLRQEVREAVQkrrAAEDAVYELQNKYLLLERRRPEEQIVVQEVVVTQKDPKLHE 1386
Cdd:COG4717 224 ELE-----EELEQLENELEAAALEERLKEARLLLLI---AAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAR 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1387 EHSRLSRSLDEEVGRRRQLELEVRQLSASVEEeeamLSFEEDRSKKLAAE-----RELRQLTLKIQELEKRppaLQEKII 1461
Cdd:COG4717 296 EKASLGKEAEELQALPALEELEEEELEELLAA----LGLPPDLSPEELLElldriEELQELLREAEELEEE---LQLEEL 368
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1462 MEEVVKLEKDPDLErSTEALRRELDQeknrvielHRECKGLQVEVDLLQKTKSQEKTIYKEVIRVEKDPVLESErarvwe 1541
Cdd:COG4717 369 EQEIAALLAEAGVE-DEEELRAALEQ--------AEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEE------ 433
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 157818855 1542 tLNRERAARQSREEDVRSLKERIDRAEALRRSWSLQKARDQASQDCGRLQRELRELE 1598
Cdd:COG4717 434 -LEELEEELEELEEELEELREELAELEAELEQLEEDGELAELLQELEELKAELRELA 489
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1264-1458 |
1.00e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.07 E-value: 1.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1264 PEVLREIDRLKAQLNELVNTHG---RCQEQLIRLQGERDEWKRERSKVETKMVNKEVV-------RHEKDPVLEKEAERL 1333
Cdd:COG4913 221 PDTFEAADALVEHFDDLERAHEaleDAREQIELLEPIRELAERYAAARERLAELEYLRaalrlwfAQRRLELLEAELEEL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1334 RQEVREAVQKRRAAEDAVYELQNKYLLLERRRpeeqivvQEVVVTQKDPkLHEEHSRLSRSLDEEVGRRRQLELEVRQLS 1413
Cdd:COG4913 301 RAELARLEAELERLEARLDALREELDELEAQI-------RGNGGDRLEQ-LEREIERLERELEERERRRARLEALLAALG 372
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 157818855 1414 ASVEEEEAMLS-----------------------FEEDRSKKLAAERELRQLTLKIQELEKR----PPALQE 1458
Cdd:COG4913 373 LPLPASAEEFAalraeaaallealeeelealeeaLAEAEAALRDLRRELRELEAEIASLERRksniPARLLA 444
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
847-1460 |
1.30e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.45 E-value: 1.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 847 ISLKENIQAQEKNLTKAYTEV-------AAAEQQQLHQLEFAKKmlEKKELNEDFQAIHSARQGSGSPAHTKTESEVLKT 919
Cdd:PRK03918 185 IKRTENIEELIKEKEKELEEVlreineiSSELPELREELEKLEK--EVKELEELKEEIEELEKELESLEGSKRKLEEKIR 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 920 QLEEERKRVAEVQRELEERrqqllqlrtqqpVARLEE-KEVVEFYRD-PQLKSNVLQASSRLEeegKRRARLQAELEVVA 997
Cdd:PRK03918 263 ELEERIEELKKEIEELEEK------------VKELKElKEKAEEYIKlSEFYEEYLDELREIE---KRLSRLEEEINGIE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 998 QKVVHLEGKRKAMQPhlLTKEVTQIERDPGLDSQVTQLHNEMQglrgenaVLAARLEGLKDELLTLEQKEINvkekvvvk 1077
Cdd:PRK03918 328 ERIKELEEKEERLEE--LKKKLKELEKRLEELEERHELYEEAK-------AKKEELERLKKRLTGLTPEKLE-------- 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1078 evvkvekdlEMVKAAQTLRLQIEEDaarRKGAKEAVAKTQARIKDLEQAISSvepkvivkevkkveqdpglLKEASRL-- 1155
Cdd:PRK03918 391 ---------KELEELEKAKEEIEEE---ISKITARIGELKKEIKELKKAIEE-------------------LKKAKGKcp 439
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1156 --RSLLEEEKNKNVM---------LARELQELQDKYRAVEKQKPKVQ-LQERVSEIFQVHpETEQEILRLRAQLQETGSK 1223
Cdd:PRK03918 440 vcGRELTEEHRKELLeeytaelkrIEKELKEIEEKERKLRKELRELEkVLKKESELIKLK-ELAEQLKELEEKLKKYNLE 518
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1224 K-SCVEREVEKLLPELEVLRAQKPVVEyKEVTQEVVRHEKNPEVLREIDRLKAQLNELvntHGRCQEQLIRLQGERDEWK 1302
Cdd:PRK03918 519 ElEKKAEEYEKLKEKLIKLKGEIKSLK-KELEKLEELKKKLAELEKKLDELEEELAEL---LKELEELGFESVEELEERL 594
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1303 RERSKVETKMVNKEVVRHEKDpVLEKEAERLRQEVREAVQKRRAAEDAVYELQNKYLLLERRRpeeqivvqevvvtqkDP 1382
Cdd:PRK03918 595 KELEPFYNEYLELKDAEKELE-REEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKY---------------SE 658
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 157818855 1383 KLHEEHSRLSRSLDEEVGRrrqLELEVRQLSASVEEEEAMLSF-EEDRSKKLAAERELRQLTLKIQELEkrppALQEKI 1460
Cdd:PRK03918 659 EEYEELREEYLELSRELAG---LRAELEELEKRREEIKKTLEKlKEELEEREKAKKELEKLEKALERVE----ELREKV 730
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1401-1662 |
1.78e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.07 E-value: 1.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1401 RRRQLELEVRQLSASVEEEEAmlSFEEDRSKKLAAERELRQLTLKIQELEKRPPALQEKI--IMEEVVKL---------E 1469
Cdd:TIGR02169 217 LKEKREYEGYELLKEKEALER--QKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLeeLNKKIKDLgeeeqlrvkE 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1470 KDPDLERSTEALRRELDQEKNRVIELHRECKGLQVEVDLLQKTKSQEKTIYKEViRVEKDPVLE--SERARVWETLNRE- 1546
Cdd:TIGR02169 295 KIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEE-RKRRDKLTEeyAELKEELEDLRAEl 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1547 ----RAARQSREEdVRSLKERIDraEALRRSWSLQKARDQASQDCGRLQRELRELEQQKLQKAQQLQEegrlLSQKTESE 1622
Cdd:TIGR02169 374 eevdKEFAETRDE-LKDYREKLE--KLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINE----LEEEKEDK 446
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 157818855 1623 RQKAAQRSQALSQLEAAILHEKDKIYEKERTLRDLHTKVS 1662
Cdd:TIGR02169 447 ALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELS 486
|
|
| Plectin |
pfam00681 |
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous ... |
1932-1967 |
1.98e-05 |
|
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous pemphigoid antigen.
Pssm-ID: 459901 Cd Length: 39 Bit Score: 43.09 E-value: 1.98e-05
10 20 30
....*....|....*....|....*....|....*.
gi 157818855 1932 VQHLTGGLIDPKRTGRIPVPQAVLCGMISEDLGQLL 1967
Cdd:pfam00681 4 AQAATGGIIDPVTGERLSVEEAVKRGLIDPETAQKL 39
|
|
| SPEC |
smart00150 |
Spectrin repeats; |
256-330 |
3.57e-05 |
|
Spectrin repeats;
Pssm-ID: 197544 [Multi-domain] Cd Length: 101 Bit Score: 44.63 E-value: 3.57e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 157818855 256 DLMPDPAGVRREYEHFK--QHELLAQEQSINQLEDDAERMVELGHPAIGPIQAHQEALKMEWQNFLNLCICQESQLQ 330
Cdd:smart00150 25 DLGKDLESVEALLKKHEafEAELEAHEERVEALNELGEQLIEEGHPDAEEIEERLEELNERWEELKELAEERRQKLE 101
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
812-1440 |
4.99e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.60 E-value: 4.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 812 RDLQEALQEYELRADTYRCSLEPTLAVSAPKRLRVISLKENIQAQEknLTKAyTEVAAAEQqqlhqlefAKKMLEKKELN 891
Cdd:PTZ00121 1237 KDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADE--LKKA-EEKKKADE--------AKKAEEKKKAD 1305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 892 EdfqaihsarqgSGSPAHTKTESEVLKTQLEEERKRVAEVQRELEERRQQLLQLRTQQPVARLEEKEVVEFYRDPQLKSn 971
Cdd:PTZ00121 1306 E-----------AKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKK- 1373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 972 vlqassrlEEEGKRRARLQAELEVVAQKVvhlEGKRKAMQPHLLTKEVTQIERDPGLDSQVTQLHNEMQGLR--GENAVL 1049
Cdd:PTZ00121 1374 --------EEAKKKADAAKKKAEEKKKAD---EAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADeaKKKAEE 1442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1050 AARLEGLKDELLTLEQKEINVKEKVVVKEVVKVEKDLEMVKAAQTLRLQIEEdaaRRKGAKEAVAKTQARIKDLEQAISS 1129
Cdd:PTZ00121 1443 AKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEE---AKKKADEAKKAAEAKKKADEAKKAE 1519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1130 VEPKVIVKEVKKVEQDPGLLKEASRLRSLLEEEKNKNVMLARELQELQDKYRAVEKQKPKVQLQERVSEIFQVHPETEQE 1209
Cdd:PTZ00121 1520 EAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMK 1599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1210 ILRLRAQLQETGSKKSCVER-EVEKLLPELEVlraQKPVVEYKEVTQEVVRHEKNPEVLREIDRLKAqlnelvnthgrcq 1288
Cdd:PTZ00121 1600 LYEEEKKMKAEEAKKAEEAKiKAEELKKAEEE---KKKVEQLKKKEAEEKKKAEELKKAEEENKIKA------------- 1663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1289 EQLIRlQGERDEWKRERSKVETKMVNKEVVRHEKDPVLEKEAERLRQevREAVQKRRAAEDAVYELQNKYLLLERRRPEE 1368
Cdd:PTZ00121 1664 AEEAK-KAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKK--KEAEEKKKAEELKKAEEENKIKAEEAKKEAE 1740
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 157818855 1369 QIVVQEVVVTQKDpklhEEHSRLSRSLDEEVGRRRqlelEVRQLSASVEEEEAMlsfEEDRSKKLAAERELR 1440
Cdd:PTZ00121 1741 EDKKKAEEAKKDE----EEKKKIAHLKKEEEKKAE----EIRKEKEAVIEEELD---EEDEKRRMEVDKKIK 1801
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
786-1571 |
5.96e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.43 E-value: 5.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 786 KLQAQKRLIQEILGREQDQATVARLTRDLQ-------EALQEYELRADTYRCsLEPTLAVSAPK----RLRVISLKENIQ 854
Cdd:pfam02463 171 KKEALKKLIEETENLAELIIDLEELKLQELklkeqakKALEYYQLKEKLELE-EEYLLYLDYLKlneeRIDLLQELLRDE 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 855 AQEKNLTKAYTEVAAAEQQQlhQLEFAKKMLEKKELNEDFQAIHSARQGSGSPAHTKTE----SEVLKTQLEEERKRVAE 930
Cdd:pfam02463 250 QEEIESSKQEIEKEEEKLAQ--VLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLErrkvDDEEKLKESEKEKKKAE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 931 VQRELEERRQQLLQLRTQQPVA-RLEEKEVVEFYRDPQLKSNVLQA--------SSRLEEEGKRRARLQAELEVVAQKVV 1001
Cdd:pfam02463 328 KELKKEKEEIEELEKELKELEIkREAEEEEEEELEKLQEKLEQLEEellakkklESERLSSAAKLKEEELELKSEEEKEA 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1002 HLEGKRKAMQPHLLTKEVTQIERDPgldsqvtqlhnEMQGLRGENAVLAARLEGLKDELLTL-EQKEINVKEKVVVKEVV 1080
Cdd:pfam02463 408 QLLLELARQLEDLLKEEKKEELEIL-----------EEEEESIELKQGKLTEEKEELEKQELkLLKDELELKKSEDLLKE 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1081 KVEKDLEMVKAAQTLRLQIEEDAARRKGAKEAVAKTQARIKDLEQA-ISSVEPKVIVKEVKKVEQDPGLLKEASRLRSLL 1159
Cdd:pfam02463 477 TQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGrIISAHGRLGDLGVAVENYKVAISTAVIVEVSAT 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1160 EEEKNKNVMLARELQELQDKYRAVEKQKPKVQLQERVSEIFQVHPETEQEILRLRAQLQETGSKKSCVEREVEKLLPELE 1239
Cdd:pfam02463 557 ADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTK 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1240 VLRAQKPVVEYKEVTQEV-----VRHEKNPEVLREIDRLKAQLNELVNTHGRCQEQLIRLQGERDEWKRERSKVETKMVN 1314
Cdd:pfam02463 637 LKESAKAKESGLRKGVSLeeglaEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLK 716
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1315 KEVVrhekdpvlEKEAERLRQEVREAVQKRRAAEDAVYELQNKYLLLERRRPEEQIVVQEVVVTQKDPKLHEEHSRLSRs 1394
Cdd:pfam02463 717 LEAE--------ELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLK- 787
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1395 ldeevgrrrqLELEVRQLSASVEEEEAMLSFEEDRSKKLAAERELRQL-TLKIQELEKRPPALQEKIIMEEVVKLEKDpd 1473
Cdd:pfam02463 788 ----------VEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEqEEKIKEEELEELALELKEEQKLEKLAEEE-- 855
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1474 lERSTEALRRELDQEKNRVIELHRECKGLQVEVDLLQKTKSQEKTIYKEVIRVEKDPVLESERARVWETLNRERAARQSR 1553
Cdd:pfam02463 856 -LERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYE 934
|
810
....*....|....*...
gi 157818855 1554 EEDVRSLKERIDRAEALR 1571
Cdd:pfam02463 935 EEPEELLLEEADEKEKEE 952
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1153-1731 |
9.09e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 47.66 E-value: 9.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1153 SRLRSLLEEEKNKNVMLARELQELQDKYRAVEKQKPKVQLQERVSEIFQVHPETEQEILRLRAQLQETGSKKSCVEREVE 1232
Cdd:pfam02463 165 SRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1233 KLLPELEVLRA--QKPVVEYKEVTQEVVRHEKNPEVLREIDRLKAQLNELVNthgrcQEQLIRLQGERDEWKRERSKVEt 1310
Cdd:pfam02463 245 LLRDEQEEIESskQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEE-----ELKSELLKLERRKVDDEEKLKE- 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1311 kmVNKEVVRHEKDPVLEKEAERLRQEVREAVQKRRAA-EDAVYELQNKYLLLERRRPEEQIVVQEVVVTQKDP-----KL 1384
Cdd:pfam02463 319 --SEKEKKKAEKELKKEKEEIEELEKELKELEIKREAeEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAaklkeEE 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1385 HEEHSRLSRSLDEEVGRRRQLELEVR----QLSASVEEEEAMLSFEEDRSKKLAAERELRQLTLKIQELEKRPPALQEKI 1460
Cdd:pfam02463 397 LELKSEEEKEAQLLLELARQLEDLLKeekkEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKE 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1461 IMEEVVKLEKDPDLERSTEALRRELDQEKNRVIELHRECKGLQVEVDLLQKTKSQEKTIY----KEVIRVEKDPVLESER 1536
Cdd:pfam02463 477 TQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVavenYKVAISTAVIVEVSAT 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1537 ARVWETLNRERAARQSREEDVRSLKERIDRAEALRRSWS-------LQKARDQASQDCGRLQR-------ELRELEQQKL 1602
Cdd:pfam02463 557 ADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAvleidpiLNLAQLDKATLEADEDDkrakvveGILKDTELTK 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1603 QKAQQLQEEGRLLSQKTESERQKAAQRSQALSQLEAAILHEKDKIYEKERTLRDLHTKVSREELNQETQTRETNLSTKIC 1682
Cdd:pfam02463 637 LKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLK 716
|
570 580 590 600
....*....|....*....|....*....|....*....|....*....
gi 157818855 1683 ILEPETGNDMSPYEAYKRGIIDRGQYLQLQELECDWEEVTTSSPCGEES 1731
Cdd:pfam02463 717 LEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEE 765
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1098-1302 |
1.09e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 1.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1098 QIEEDAARRKGAKEAVAKTQARIKDLEQAISSVEpkvivkevkkveqdpGLLKEASRLRSLLEEEKNKnVMLARELQELQ 1177
Cdd:COG4913 611 KLAALEAELAELEEELAEAEERLEALEAELDALQ---------------ERREALQRLAEYSWDEIDV-ASAEREIAELE 674
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1178 DKYRAVEKQKPKV-QLQERVSEIFQVHPETEQEILRLRAQLQETGSKKSCVEREVEKLLPELEVLrAQKPVVEYKEVTQE 1256
Cdd:COG4913 675 AELERLDASSDDLaALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAA-EDLARLELRALLEE 753
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 157818855 1257 VVRHEKNPEVLREI-DRLKAQLNELVNTHGRCQEQLIRLQGE-RDEWK 1302
Cdd:COG4913 754 RFAAALGDAVERELrENLEERIDALRARLNRAEEELERAMRAfNREWP 801
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1057-1487 |
1.31e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 47.02 E-value: 1.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1057 KDELLTLEQKEINVKEKVVVKEVVKVEKDLEMvkAAQTLRLQIEEDAARRKGAKEAVAKTQARIKDLEQAISSVEPKVIV 1136
Cdd:pfam05483 290 KKDHLTKELEDIKMSLQRSMSTQKALEEDLQI--ATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRT 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1137 KEVKKVEQDPGL-------LKEASRLRSLLEEEKNKNVMLAR------ELQELQDKYRAVEKQKPKVQLQERvsEIFQVH 1203
Cdd:pfam05483 368 EQQRLEKNEDQLkiitmelQKKSSELEEMTKFKNNKEVELEElkkilaEDEKLLDEKKQFEKIAEELKGKEQ--ELIFLL 445
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1204 PETEQEILRLRAQLQETGSKKSCVEREVEKLLPELE---------VLRAQKPVVEYKEVTQE--------------VVRH 1260
Cdd:pfam05483 446 QAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEkeklknielTAHCDKLLLENKELTQEasdmtlelkkhqedIINC 525
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1261 EKNPE-VLREIDRLKAQLNELVNTHGRCQEQLIRlQGERDEWKRERSKVETKMVNKEVVRHEKD-PVLEKEAERLRQEVR 1338
Cdd:pfam05483 526 KKQEErMLKQIENLEEKEMNLRDELESVREEFIQ-KGDEVKCKLDKSEENARSIEYEVLKKEKQmKILENKCNNLKKQIE 604
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1339 -------------EAVQKRRAAEDA---VYELQ-NKY-LLLERRRPEEQIVVQEVVVTQKDPKLHEEH-----SRLSRSL 1395
Cdd:pfam05483 605 nknknieelhqenKALKKKGSAENKqlnAYEIKvNKLeLELASAKQKFEEIIDNYQKEIEDKKISEEKlleevEKAKAIA 684
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1396 DEEVGRRRQLELEVRQlsaSVEEEEAMLSFEEDRSKKLAAER--ELRQLTLKIQELEKRPPALQEKI--IMEEVVKLEKD 1471
Cdd:pfam05483 685 DEAVKLQKEIDKRCQH---KIAEMVALMEKHKHQYDKIIEERdsELGLYKNKEQEQSSAKAALEIELsnIKAELLSLKKQ 761
|
490
....*....|....*..
gi 157818855 1472 PDLER-STEALRRELDQ 1487
Cdd:pfam05483 762 LEIEKeEKEKLKMEAKE 778
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1430-1675 |
1.37e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 1.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1430 SKKLAAERELRQLTLKIQELEKRppalQEKIIMEEVVKLEKDPDLERSTEALRRELDQEKNRVIELHRECKGLQVEVDLL 1509
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKE----LAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1510 QKTKSQEKTIYKEVIRVekdpvleserarvwetlnrerAARQSREEDVRSLKERIDRAEALRRSWSLQKARDQASQDCGR 1589
Cdd:COG4942 96 RAELEAQKEELAELLRA---------------------LYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEE 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1590 LQRELRELEQQKLQKAQQLQEEGRLLSQKTESER---QKAAQRSQALSQLEAAILHEKDKIYEKERTLRDLHTKVSREEL 1666
Cdd:COG4942 155 LRADLAELAALRAELEAERAELEALLAELEEERAaleALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
....*....
gi 157818855 1667 NQETQTRET 1675
Cdd:COG4942 235 EAAAAAERT 243
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
977-1579 |
1.66e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 46.71 E-value: 1.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 977 SRLEEEGKRRARLQAElevvaqkvvhlegkRKAMQPHLLTkevtqierdpgLDSQVTQLHNEMQGLRGENAVLAARLEGL 1056
Cdd:pfam01576 82 SRLEEEEERSQQLQNE--------------KKKMQQHIQD-----------LEEQLDEEEAARQKLQLEKVTTEAKIKKL 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1057 KDELLTLEQKEinvkekvvvKEVVKVEKDLEMVKAAQTLRLQIEEDAArrKGAKEAVAKTQARIKDLEQAISSVEPKVIV 1136
Cdd:pfam01576 137 EEDILLLEDQN---------SKLSKERKLLEERISEFTSNLAEEEEKA--KSLSKLKNKHEAMISDLEERLKKEEKGRQE 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1137 KEVKKVEQD---PGLLKEASRLRSLLEEEKNKNVMLARELQELQDkyRAVEKQKPKVQLQERVSEIFQVHPETEQEILRL 1213
Cdd:pfam01576 206 LEKAKRKLEgesTDLQEQIAELQAQIAELRAQLAKKEEELQAALA--RLEEETAQKNNALKKIRELEAQISELQEDLESE 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1214 RAQLQETGSKKSCVEREVEKLLPELE----VLRAQKPVVEYKEvtQEVVRHEKNPEvlREIDRLKAQLNELVNTHGrcqE 1289
Cdd:pfam01576 284 RAARNKAEKQRRDLGEELEALKTELEdtldTTAAQQELRSKRE--QEVTELKKALE--EETRSHEAQLQEMRQKHT---Q 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1290 QLIRLQGERDEWKRERSKVETKMVNKEVVRHEkdpvLEKEAERLRQEVREAVQKRRAAEDAVYELQNKYLLLERRRPEEQ 1369
Cdd:pfam01576 357 ALEELTEQLEQAKRNKANLEKAKQALESENAE----LQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELA 432
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1370 IVVQE------------VVVTQKDPKLHEEHSRLSRSL-------DEEVGRRRQLELEVRQLsasvEEEEAML--SFEED 1428
Cdd:pfam01576 433 EKLSKlqselesvssllNEAEGKNIKLSKDVSSLESQLqdtqellQEETRQKLNLSTRLRQL----EDERNSLqeQLEEE 508
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1429 RSKKLAAERELRQLTLKIQELEKRppaLQEKIIMEEVVKlEKDPDLERSTEALRRELDQEKNRVIELHRECKGLQVEVDL 1508
Cdd:pfam01576 509 EEAKRNVERQLSTLQAQLSDMKKK---LEEDAGTLEALE-EGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDD 584
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1509 LQKTKSQEKTIYKEVIRVEK--DPVLESERARVWETLN-RERAARQSREEDV------RSLKERIDRAEALRRSWSLQKA 1579
Cdd:pfam01576 585 LLVDLDHQRQLVSNLEKKQKkfDQMLAEEKAISARYAEeRDRAEAEAREKETralslaRALEEALEAKEELERTNKQLRA 664
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1030-1518 |
1.89e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.55 E-value: 1.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1030 SQVTQLHNEMQGLRGENAVLAARLEGLKDELLTLE------QKEINVKEKVVVKEVVKVEKDLEMVKAAQTLRLQIEEDA 1103
Cdd:TIGR04523 145 TEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEkeklniQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELK 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1104 ARRKGAKEAVAKTQARIKDLEQAISSVEpkviVKEVKKVEQDPGLLKEASRLRSLLEEEKNKNVMLARELQELQDKYRAV 1183
Cdd:TIGR04523 225 KQNNQLKDNIEKKQQEINEKTTEISNTQ----TQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDL 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1184 EKQK-----------------PKVQLQERVSEIFQVHPETEQEILRLRAQLQETGSKKSCVEREVEKLLPELEVLRAQkp 1246
Cdd:TIGR04523 301 NNQKeqdwnkelkselknqekKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKE-- 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1247 vveykevtqevvrhekNPEVLREIDRLKAQLNELvnthgrcqEQLIRLQGERDEWKRErsKVETKMVNKEvvrhekdpVL 1326
Cdd:TIGR04523 379 ----------------NQSYKQEIKNLESQINDL--------ESKIQNQEKLNQQKDE--QIKKLQQEKE--------LL 424
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1327 EKEAERLRQEVREAVQKRRAAEDAVYELQNKYLLLERRRPEEQIVVQEVVVTQKDPKLHEEhsRLSRSLDEEVGRRRQLE 1406
Cdd:TIGR04523 425 EKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLE--QKQKELKSKEKELKKLN 502
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1407 LEVRQLsasveeeeamlsfeEDRSKKLaaERELRQLTLKIQELEKRPPALQEKIIMEEVVKLEKDPDLERstEALRRELD 1486
Cdd:TIGR04523 503 EEKKEL--------------EEKVKDL--TKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKK--ENLEKEID 564
|
490 500 510
....*....|....*....|....*....|....*
gi 157818855 1487 QEKNRVIELHRECKGL---QVEVDLLQKTKSQEKT 1518
Cdd:TIGR04523 565 EKNKEIEELKQTQKSLkkkQEEKQELIDQKEKEKK 599
|
|
| SPEC |
cd00176 |
Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members ... |
156-330 |
2.35e-04 |
|
Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Pssm-ID: 238103 [Multi-domain] Cd Length: 213 Bit Score: 44.74 E-value: 2.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 156 LEQKQKLICEGHYGPGMAELEQQVAEHNILQREIEAY----------GQQLRTLVGPDA-------NAIRNQYRDLLKAA 218
Cdd:cd00176 16 LSEKEELLSSTDYGDDLESVEALLKKHEALEAELAAHeervealnelGEQLIEEGHPDAeeiqerlEELNQRWEELRELA 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 219 SWRRQSLG---SLYTHLQGCTKQLGALADQQGRILQQdwsDLMPDPAGVRREYEHFK--QHELLAQEQSINQLEDDAERM 293
Cdd:cd00176 96 EERRQRLEealDLQQFFRDADDLEQWLEEKEAALASE---DLGKDLESVEELLKKHKelEEELEAHEPRLKSLNELAEEL 172
|
170 180 190
....*....|....*....|....*....|....*...
gi 157818855 294 VELGHPAIGP-IQAHQEALKMEWQNFLNLCICQESQLQ 330
Cdd:cd00176 173 LEEGHPDADEeIEEKLEELNERWEELLELAEERQKKLE 210
|
|
| Plectin |
pfam00681 |
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous ... |
1683-1711 |
2.92e-04 |
|
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous pemphigoid antigen.
Pssm-ID: 459901 Cd Length: 39 Bit Score: 40.00 E-value: 2.92e-04
10 20
....*....|....*....|....*....
gi 157818855 1683 ILEPETGNDMSPYEAYKRGIIDRGQYLQL 1711
Cdd:pfam00681 11 IIDPVTGERLSVEEAVKRGLIDPETAQKL 39
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1273-1673 |
3.85e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.80 E-value: 3.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1273 LKAQLNELVNTHGRCQEQLIRLQGERDEWKRERSKVETKMVNKEVVRHEKDpVLEKEAERLRQEVREAVQKRRAAEDAVY 1352
Cdd:PRK02224 204 LHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELE-TLEAEIEDLRETIAETEREREELAEEVR 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1353 ELQNKYLLLERRRPEEQIVVQEVVVTQKDPKLH-----EEHSRLSRSLDEEVGRRRQLELEVRQLSASVE--EEEAmlsf 1425
Cdd:PRK02224 283 DLRERLEELEEERDDLLAEAGLDDADAEAVEARreeleDRDEELRDRLEECRVAAQAHNEEAESLREDADdlEERA---- 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1426 EEDRSKKLAAERELRQLTLKIQELEKRPPALQEKI--IMEEVVKLEKDPD-LERSTEALRRELDQEKNRVIELHRECKGL 1502
Cdd:PRK02224 359 EELREEAAELESELEEAREAVEDRREEIEELEEEIeeLRERFGDAPVDLGnAEDFLEELREERDELREREAELEATLRTA 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1503 QVEV----DLLQKTKSQEktIYKEVIRVEKDPVLESERARVwETLNRERAarqSREEDVRSLKERIDRAEALRRSWS-LQ 1577
Cdd:PRK02224 439 RERVeeaeALLEAGKCPE--CGQPVEGSPHVETIEEDRERV-EELEAELE---DLEEEVEEVEERLERAEDLVEAEDrIE 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1578 KARDQASQDCGRLQRELRELEQQKLQKAQQLQEEGRLLSQKTESERQKAAQRSQALSQLE--AAILHEKDKIYEKERTLR 1655
Cdd:PRK02224 513 RLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREevAELNSKLAELKERIESLE 592
|
410
....*....|....*....
gi 157818855 1656 DLHTKVS-REELNQETQTR 1673
Cdd:PRK02224 593 RIRTLLAaIADAEDEIERL 611
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
920-1687 |
4.14e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.44 E-value: 4.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 920 QLEEERKRVAEVQRELEERRQQllqlrtqqpVARLE-EKEVVEFYRDPQLKSNVLQASSRLEEEGKRRARLQAELEVVAQ 998
Cdd:TIGR02169 178 ELEEVEENIERLDLIIDEKRQQ---------LERLRrEREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLAS 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 999 KVVHLEGKRKAMQPhlLTKEVTQIERDPgldSQVTQLHNEMQGlrGENAVLAARLEGLKDELLTLE--QKEINVKEKVVV 1076
Cdd:TIGR02169 249 LEEELEKLTEEISE--LEKRLEEIEQLL---EELNKKIKDLGE--EEQLRVKEKIGELEAEIASLErsIAEKERELEDAE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1077 KEVVKVEKDLEMVKA-AQTLRLQIEEDAARRKGAKEAVAKTQARIKDLEQAISSVEpkvivkevkkveqdpgllKEASRL 1155
Cdd:TIGR02169 322 ERLAKLEAEIDKLLAeIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVD------------------KEFAET 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1156 RSLLEEEKNKNVMLARELQELQDKYRavEKQKPKVQLQERVSEIfqvhpetEQEILRLRAQLQETGSKKSCVEREVEKLL 1235
Cdd:TIGR02169 384 RDELKDYREKLEKLKREINELKRELD--RLQEELQRLSEELADL-------NAAIAGIEAKINELEEEKEDKALEIKKQE 454
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1236 PELEVLRAQKPVV--EYKEVTQEVVRHEKN-PEVLREIDRLKAQLNELVNT--HGRCQEQLIR--------LQGERDEWK 1302
Cdd:TIGR02169 455 WKLEQLAADLSKYeqELYDLKEEYDRVEKElSKLQRELAEAEAQARASEERvrGGRAVEEVLKasiqgvhgTVAQLGSVG 534
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1303 RERSK--------------VETKMVNKEVVRHEKdpvlEKEAER-----LRQEVREAVQKRRAAEDAV------------ 1351
Cdd:TIGR02169 535 ERYATaievaagnrlnnvvVEDDAVAKEAIELLK----RRKAGRatflpLNKMRDERRDLSILSEDGVigfavdlvefdp 610
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1352 -YELQNKYLL--------LERRRPEEQIVVQEVVvtqkDPKLHEEHSRL---SRSLDEEVGRRRQLELEVRQLSASVEEE 1419
Cdd:TIGR02169 611 kYEPAFKYVFgdtlvvedIEAARRLMGKYRMVTL----EGELFEKSGAMtggSRAPRGGILFSRSEPAELQRLRERLEGL 686
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1420 EAMLSF---EEDRSKKLAAE--RELRQLTLKIQELEKRPPALQEKI--IMEEVVKLEKDPD-LERSTEALRRELDQEKNR 1491
Cdd:TIGR02169 687 KRELSSlqsELRRIENRLDElsQELSDASRKIGEIEKEIEQLEQEEekLKERLEELEEDLSsLEQEIENVKSELKELEAR 766
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1492 VIELHRECKGLQVEVDLLQKTKSQEKTiykEVIRVEKDPvLESERARVWETLNRERAARQSREEDVRSLKERIDRAEALR 1571
Cdd:TIGR02169 767 IEELEEDLHKLEEALNDLEARLSHSRI---PEIQAELSK-LEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQR 842
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1572 RSWSLQKARDQASQDCGRLQRE--LRELEQQKLQKAQQLQEEGRLLSQKTESERQKAAQRsQALSQLEAAIlhekdkiyE 1649
Cdd:TIGR02169 843 IDLKEQIKSIEKEIENLNGKKEelEEELEELEAALRDLESRLGDLKKERDELEAQLRELE-RKIEELEAQI--------E 913
|
810 820 830
....*....|....*....|....*....|....*...
gi 157818855 1650 KERtLRDLHTKVSREELNQETQTRETNLSTKICILEPE 1687
Cdd:TIGR02169 914 KKR-KRLSELKAKLEALEEELSEIEDPKGEDEEIPEEE 950
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1383-1639 |
5.14e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 45.17 E-value: 5.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1383 KLHEEHSRLSRSLDEEVGRRRQLELEVRQLSASVEEEEAMLSFEEDRSKKLAAEREL-----RQLTLKIQELEKRPPAL- 1456
Cdd:pfam01576 100 KMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLleeriSEFTSNLAEEEEKAKSLs 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1457 -----QEKIIMEEVVKLEKDPDLERSTEALRRELDQEKNrviELHRECKGLQVEV-DLLQKTKSQEKTIYKEVIRVEKDP 1530
Cdd:pfam01576 180 klknkHEAMISDLEERLKKEEKGRQELEKAKRKLEGEST---DLQEQIAELQAQIaELRAQLAKKEEELQAALARLEEET 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1531 V-----------LESERARVWETLNRERAARQSREEDVRSLKERIdraEALrrswslqKARDQASQDCGRLQRELR-ELE 1598
Cdd:pfam01576 257 AqknnalkkireLEAQISELQEDLESERAARNKAEKQRRDLGEEL---EAL-------KTELEDTLDTTAAQQELRsKRE 326
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 157818855 1599 QQKLQKAQQLQEEGRLLSQKTESERQKAAQRSQALS-QLEAA 1639
Cdd:pfam01576 327 QEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTeQLEQA 368
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1396-1673 |
5.54e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.04 E-value: 5.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1396 DEEVGRRRQLELEvRQLSASVEEE-----EAMLSFEEDRSKKLAAERELRQLTLKIQELEKRPPALQEKiiMEEVVKlEK 1470
Cdd:TIGR00606 224 DQITSKEAQLESS-REIVKSYENEldplkNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELK--MEKVFQ-GT 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1471 DPDLERSTEALRRELDQEKNRVIELHRECKGLQVEVDLLQKTKSqEKTIYKEVIRVEKDPVLESERARVWETLNRERAAR 1550
Cdd:TIGR00606 300 DEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKT-ELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLE 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1551 QSREEDVRSLKERIDRAEALRRSWSLQKARdQASQDCGRLQRELRELEQQKLQKAQQLQEEGRLLSQKTESERQKAAQRS 1630
Cdd:TIGR00606 379 LDGFERGPFSERQIKNFHTLVIERQEDEAK-TAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELK 457
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 157818855 1631 QALSQLEAAILHEKDkIYEKERTLRDLHTKVSREELNQETQTR 1673
Cdd:TIGR00606 458 FVIKELQQLEGSSDR-ILELDQELRKAERELSKAEKNSLTETL 499
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1270-1676 |
1.38e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.60 E-value: 1.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1270 IDRLKAQLNELVNTHGRcqeQLIRLQGERDEWKRERSKVETKMVNKEVVRHEKDPvLEKEAERLRQEVREAVQKRRAAED 1349
Cdd:COG4717 48 LERLEKEADELFKPQGR---KPELNLKELKELEEELKEAEEKEEEYAELQEELEE-LEEELEELEAELEELREELEKLEK 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1350 A--VYELQNKYLLLERRRPEEQIVVQEVVVTQKDpkLHEEHSRLSRSLDEEVGRRRQLELEVRQLSASVEEE--EAMLSF 1425
Cdd:COG4717 124 LlqLLPLYQELEALEAELAELPERLEELEERLEE--LRELEEELEELEAELAELQEELEELLEQLSLATEEElqDLAEEL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1426 EEDRSKKLAAERELRQLTLKIQELEKRPPALQEKIIMEEVVKLEKDPDLERSTEALRRELDQEKNRVIELHRECKG---- 1501
Cdd:COG4717 202 EELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGvlfl 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1502 -LQVEVDLLQKTKSQEKTIYKEVIRVEKDPVLESERARVWETLNRERAARQSRE--------EDVRSLKERIDRAEALRR 1572
Cdd:COG4717 282 vLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSpeellellDRIEELQELLREAEELEE 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1573 SWSLQKARDQASQDCGRLQ-RELRELEQQKLQKAQQLQEEGRLLSQKTESERQKAAQRSQA----LSQLEAAILHEKDKI 1647
Cdd:COG4717 362 ELQLEELEQEIAALLAEAGvEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLealdEEELEEELEELEEEL 441
|
410 420
....*....|....*....|....*....
gi 157818855 1648 YEKERTLRDLHTKvsREELNQETQTRETN 1676
Cdd:COG4717 442 EELEEELEELREE--LAELEAELEQLEED 468
|
|
| PLEC |
smart00250 |
Plectin repeat; |
1813-1850 |
1.91e-03 |
|
Plectin repeat;
Pssm-ID: 197605 Cd Length: 38 Bit Score: 37.46 E-value: 1.91e-03
10 20 30
....*....|....*....|....*....|....*...
gi 157818855 1813 LGLTEDSFPIAGVYDTTTDNKCSIKAAVAKNMLDPITG 1850
Cdd:smart00250 1 QRLLEAQSAIGGIIDPETGQKLSVEEALRRGLIDPETG 38
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1329-1537 |
1.91e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 43.31 E-value: 1.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1329 EAERLRQEVREAVQKRRAAEDAVYELQNKYLLLERRRPEEQIVVQEVVVTQKDPKLheehsrlsRSLDEEVGRrrqLELE 1408
Cdd:COG2433 360 PPDVDRDEVKARVIRGLSIEEALEELIEKELPEEEPEAEREKEHEERELTEEEEEI--------RRLEEQVER---LEAE 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1409 VRQLSASVEEEEAMLSFEEDRSKKLAAERElrqltlkiQELEKRppalqekiimEEVVKLEkdpdleRSTEALRRELDQE 1488
Cdd:COG2433 429 VEELEAELEEKDERIERLERELSEARSEER--------REIRKD----------REISRLD------REIERLERELEEE 484
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 157818855 1489 KNRVIELHRECKGLQvevDLLQKTKSQEKTIYKEVIRVEKDPVLESERA 1537
Cdd:COG2433 485 RERIEELKRKLERLK---ELWKLEHSGELVPVKVVEKFTKEAIRRLEEE 530
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1295-1640 |
2.71e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.02 E-value: 2.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1295 QGERDEWKRERSKVeTKMVNKEVVRH--EKDPVLEKEAErLRQEVREAVQKRRAAEDAVYELQNKYLLLERRRpeeqivv 1372
Cdd:COG3096 252 QSDRDLFKHLITEA-TNYVAADYMRHanERRELSERALE-LRRELFGARRQLAEEQYRLVEMARELEELSARE------- 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1373 qevVVTQKDPKLHEEHSRLSRS---LDEEVGRRRQ--LELEVRQLSASVEEEEAMLSFEEDRSKKLAAERELRQLTLKIQ 1447
Cdd:COG3096 323 ---SDLEQDYQAASDHLNLVQTalrQQEKIERYQEdlEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLA 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1448 ELEKRPPALQEKII--------MEEVVKLEKDPDLerSTEALRRELDQEKNRVIELHRECKGLQVEVDLLQKTKSQEKTI 1519
Cdd:COG3096 400 DYQQALDVQQTRAIqyqqavqaLEKARALCGLPDL--TPENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKA 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1520 YKEVIRVekdpVLESERARVWETlnreraARQSREeDVRSLKERIDRAEALR--------RSWSLQKARDQASQDCGRLQ 1591
Cdd:COG3096 478 YELVCKI----AGEVERSQAWQT------ARELLR-RYRSQQALAQRLQQLRaqlaeleqRLRQQQNAERLLEEFCQRIG 546
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 157818855 1592 REL---RELEQQKLQKAQQLQEegrlLSQKTESERQKAAQRSQALSQLEAAI 1640
Cdd:COG3096 547 QQLdaaEELEELLAELEAQLEE----LEEQAAEAVEQRSELRQQLEQLRARI 594
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1383-1590 |
3.01e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 3.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1383 KLHEEHSRLSRSLDEEVGRRRQLELEVRQLSASVEEEEAMLSFEEDRSKKLaaERELRQLTLKIQELEKRPPALQEKII- 1461
Cdd:COG4942 31 QLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAAL--EAELAELEKEIAELRAELEAQKEELAe 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1462 -------------MEEVVKLEKDPDLERSTEALRRELDQEKNRVIELHRECKGLQVEVDLLQKTKSQEKTIYKEVIRVEK 1528
Cdd:COG4942 109 llralyrlgrqppLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERA 188
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 157818855 1529 D-PVLESERARVWETLNRERAARQSR----EEDVRSLKERIDRAEALRRSWSLQKARDQASQDCGRL 1590
Cdd:COG4942 189 AlEALKAERQKLLARLEKELAELAAElaelQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGKL 255
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1429-1674 |
4.44e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 42.23 E-value: 4.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1429 RSKKLAAERELRQ-------LTLKIQELEKRppalqekiimeeVVKLEKDPDLERSTEALRRELDQEKNRVIELHRECKG 1501
Cdd:COG1196 171 KERKEEAERKLEAteenlerLEDILGELERQ------------LEPLERQAEKAERYRELKEELKELEAELLLLKLRELE 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1502 LQVEVDLLQKTKSQEKtiyKEVIRVEKDpVLESERARVWETLNRERAARQSREEDVRSLKERIDRAEALRRSWSLQKARD 1581
Cdd:COG1196 239 AELEELEAELEELEAE---LEELEAELA-ELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1582 QAsqdcgRLQRELRELEQQKLQKAQQLQEEGRLLSQKTESE------RQKAAQRSQALSQLEAAILHEKDKIYEKERTLR 1655
Cdd:COG1196 315 EE-----RLEELEEELAELEEELEELEEELEELEEELEEAEeeleeaEAELAEAEEALLEAEAELAEAEEELEELAEELL 389
|
250
....*....|....*....
gi 157818855 1656 DLHTKVSREELNQETQTRE 1674
Cdd:COG1196 390 EALRAAAELAAQLEELEEA 408
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
875-1663 |
5.35e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.88 E-value: 5.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 875 LHQLEFAKKML----EKKELNEDFQAIHSARQGSG----SPAHTKTESEVLKTQLEEERKRVAEVQRELEERRQQLLQLR 946
Cdd:TIGR00618 149 LPQGEFAQFLKakskEKKELLMNLFPLDQYTQLALmefaKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKEL 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 947 TQQPVARLEEKEVVEFYRDPQLKSNvlQASSRLEEEGKRRAR---LQAELEVVAQKVVHLEGKRKAMQPHLLTKEVTQIE 1023
Cdd:TIGR00618 229 KHLREALQQTQQSHAYLTQKREAQE--EQLKKQQLLKQLRARieeLRAQEAVLEETQERINRARKAAPLAAHIKAVTQIE 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1024 RdpgldsQVTQLHNEMQGLRGENA-VLAARLEGLKDELLTLEQKEINVkekvvvkevvkvekdlEMVKAAQTLRLQIEED 1102
Cdd:TIGR00618 307 Q------QAQRIHTELQSKMRSRAkLLMKRAAHVKQQSSIEEQRRLLQ----------------TLHSQEIHIRDAHEVA 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1103 AARRKGAKEAVAKTQaRIKDLEQAISSVEPkvivkevkkveqdpgLLKEASRLRSLLEEEKNKNVMLARELQELQDKYRA 1182
Cdd:TIGR00618 365 TSIREISCQQHTLTQ-HIHTLQQQKTTLTQ---------------KLQSLCKELDILQREQATIDTRTSAFRDLQGQLAH 428
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1183 VEKQkpkVQLQERVSEIFQVHPETEQEILRLRAQLQETGSKKScveREVEKLLPELEVLrAQKPVVEYKEVTQEVVRHEK 1262
Cdd:TIGR00618 429 AKKQ---QELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSL---KEREQQLQTKEQI-HLQETRKKAVVLARLLELQE 501
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1263 NPEVLREIDRLKAQLNELVNTHGRCQEQLIRLQGERDEWKRERSKVETKMVNKEVVRHEkdpvLEKEAERLRQEVREAVQ 1342
Cdd:TIGR00618 502 EPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRAS----LKEQMQEIQQSFSILTQ 577
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1343 KRRAAEDAVYELQNkylLLERRRPEEQIVVQEVVVTQKDPKLHEEHSRLSRSLDEEVGRRRQLELEVRQLSASVEEEEAM 1422
Cdd:TIGR00618 578 CDNRSKEDIPNLQN---ITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLT 654
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1423 LSFEEDRsKKLAAERELRQLTLKIQELEkrPPALQEKIIMEEVVKlekdPDLERSTEALRRELDQEKnrviELHRECKGL 1502
Cdd:TIGR00618 655 LTQERVR-EHALSIRVLPKELLASRQLA--LQKMQSEKEQLTYWK----EMLAQCQTLLRELETHIE----EYDREFNEI 723
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1503 QVEVDLLQKTKSQEKTIYKEVIRvekdpvlESERARVWETLNRERAARQSREEDVRSLKERIDRAEALRRSWSLQKARDQ 1582
Cdd:TIGR00618 724 ENASSSLGSDLAAREDALNQSLK-------ELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREE 796
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1583 asqdcgrLQRELRELEQQKLQKAQQLQEEGRLLSQKTESERQKAAQRSQALSQLEAAILHEKDKIYEKERTLRDLHTKVS 1662
Cdd:TIGR00618 797 -------DTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQA 869
|
.
gi 157818855 1663 R 1663
Cdd:TIGR00618 870 K 870
|
|
| PspC_subgroup_1 |
NF033838 |
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
1153-1533 |
6.12e-03 |
|
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.
Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 41.54 E-value: 6.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1153 SRLRSLLEEEKN-KNVMLARELQELQDKY---RAVEKQKPKVQLQERV-SEIFQVHPETEQEILRLRAQLQETGSKkscV 1227
Cdd:NF033838 72 SEIQKSLDKRKHtQNVALNKKLSDIKTEYlyeLNVLKEKSEAELTSKTkKELDAAFEQFKKDTLEPGKKVAEATKK---V 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1228 EREVEKLLPELEVLRAQKPVVEYKevTQEVVRHEKNPEVLR-EIDRLKAQLNElvnthgrcqeqlirlqgERDEWKRERS 1306
Cdd:NF033838 149 EEAEKKAKDQKEEDRRNYPTNTYK--TLELEIAESDVEVKKaELELVKEEAKE-----------------PRDEEKIKQA 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1307 KVETKMVNKEVVRHEKDPVLEKEAERLRQEVREAVQKRRAAEDAVYELQNKyllLERRRpeeqIVVQEVVVTQKDPKLHE 1386
Cdd:NF033838 210 KAKVESKKAEATRLEKIKTDREKAEEEAKRRADAKLKEAVEKNVATSEQDK---PKRRA----KRGVLGEPATPDKKEND 282
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1387 EHSRLSrSLDEEVGRRRQLELEVRQLSASVEEEEAmlsfeEDRSKKLAAE--RELRQLTLKIQELEkrppalqekiIMEE 1464
Cdd:NF033838 283 AKSSDS-SVGEETLPSPSLKPEKKVAEAEKKVEEA-----KKKAKDQKEEdrRNYPTNTYKTLELE----------IAES 346
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 157818855 1465 VVKLeKDPDLERSTEALRRELDQEKNRVIELHRECKglQVEVDLLQKTKSQEKTIYKEVIR--VEKDPVLE 1533
Cdd:NF033838 347 DVKV-KEAELELVKEEAKEPRNEEKIKQAKAKVESK--KAEATRLEKIKTDRKKAEEEAKRkaAEEDKVKE 414
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1037-1449 |
7.17e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 7.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1037 NEMQGLRGENAVLAARLEGLKDELLTLEQKEINVKEKVVVKEVVKVEKDLemVKAAQTLRLQIEEDAARRKGAKEAVAKT 1116
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPL--YQELEALEAELAELPERLEELEERLEEL 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1117 QARIKDLEQAISSVEPKVIVKEVKKVEQDPGLLKEASRLRSLLEEEKNKNVMLARELQELQDKYRAVEKQKPKVQLQERV 1196
Cdd:COG4717 159 RELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEA 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1197 SEIFQVHPETEQEILRLRAQLQETGSKKSCVEREVEK---------LLPELEVLRAQKPVVEYKEVTQEVVRHEKNPEVL 1267
Cdd:COG4717 239 AALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIagvlflvlgLLALLFLLLAREKASLGKEAEELQALPALEELEE 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1268 REIDRLKAQLNELVNTHGRCQEQLIRLQGERDEWKRERSKVETKMvNKEVVRHEKDPVLEKEAERLRQEVREAVQKRRAA 1347
Cdd:COG4717 319 EELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEEL-QLEELEQEIAALLAEAGVEDEEELRAALEQAEEY 397
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1348 EdavyELQNKYLLLERRRPEEQIVVQEVVVTQKDPKLHEEHSRLSRSLDEEVGRRRQLELEVRQLSASVEEEEAMLSFEE 1427
Cdd:COG4717 398 Q----ELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELAE 473
|
410 420
....*....|....*....|..
gi 157818855 1428 DRSKKLAAERELRQLTLKIQEL 1449
Cdd:COG4717 474 LLQELEELKAELRELAEEWAAL 495
|
|
| PLEC |
smart00250 |
Plectin repeat; |
1683-1708 |
9.31e-03 |
|
Plectin repeat;
Pssm-ID: 197605 Cd Length: 38 Bit Score: 35.54 E-value: 9.31e-03
10 20
....*....|....*....|....*.
gi 157818855 1683 ILEPETGNDMSPYEAYKRGIIDRGQY 1708
Cdd:smart00250 13 IIDPETGQKLSVEEALRRGLIDPETG 38
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
1408-1632 |
9.37e-03 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 40.82 E-value: 9.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1408 EVRQLSASVEEEEAMLSFEEDRSKKLaaERELRQLTLKIQELEKRPPALQEKIIMEEVVKLEkdpdLERSTEALRRELDQ 1487
Cdd:pfam19220 42 ELPQAKSRLLELEALLAQERAAYGKL--RRELAGLTRRLSAAEGELEELVARLAKLEAALRE----AEAAKEELRIELRD 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157818855 1488 EKNRVIELHREckglqvevdLLQKTksqektiykevirvEKDPVLESERARVWETLNRERAARQSREEDVRSLKERIDRA 1567
Cdd:pfam19220 116 KTAQAEALERQ---------LAAET--------------EQNRALEEENKALREEAQAAEKALQRAEGELATARERLALL 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 157818855 1568 EALRRSwsLQKARDQASQDCGRLQRELRELEQQKLQKAQQLQE-EGRLLSQKTESERQKAAQRSQA 1632
Cdd:pfam19220 173 EQENRR--LQALSEEQAAELAELTRRLAELETQLDATRARLRAlEGQLAAEQAERERAEAQLEEAV 236
|
|
| |
