NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|157823956|ref|NP_001100240|]
View 

large ribosomal subunit protein mL54 [Rattus norvegicus]

Protein Classification

mL54 family ribosomal protein( domain architecture ID 7917)

mL54 family ribosomal protein

Gene Ontology:  GO:0003735|GO:0032543
PubMed:  24524803

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L37 super family cl07245
Mitochondrial ribosomal protein L37; This family includes yeast MRPL37 a mitochondrial ...
 67-130 6.91e-07

Mitochondrial ribosomal protein L37; This family includes yeast MRPL37 a mitochondrial ribosomal protein.


The actual alignment was detected with superfamily member pfam08561:

Pssm-ID: 430074  Cd Length: 88  Bit Score: 44.26  E-value: 6.91e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 157823956   67 THAMGVNIYKEGQEVALKPDSEYPTWLFQV-DLGPPKKLEDLEPES--------------REYWRLLRKQNIWRHNRLS 130
Cdd:pfam08561  10 TVLKGLNILKNGPDPVALEDSEYPDWLWTLlDDSKSKKQRELAAKRlrakaeaeepreelKKALRKARRAKIKENNFLK 88
 
Name Accession Description Interval E-value
Ribosomal_L37 pfam08561
Mitochondrial ribosomal protein L37; This family includes yeast MRPL37 a mitochondrial ...
 67-130 6.91e-07

Mitochondrial ribosomal protein L37; This family includes yeast MRPL37 a mitochondrial ribosomal protein.


Pssm-ID: 430074  Cd Length: 88  Bit Score: 44.26  E-value: 6.91e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 157823956   67 THAMGVNIYKEGQEVALKPDSEYPTWLFQV-DLGPPKKLEDLEPES--------------REYWRLLRKQNIWRHNRLS 130
Cdd:pfam08561  10 TVLKGLNILKNGPDPVALEDSEYPDWLWTLlDDSKSKKQRELAAKRlrakaeaeepreelKKALRKARRAKIKENNFLK 88
 
Name Accession Description Interval E-value
Ribosomal_L37 pfam08561
Mitochondrial ribosomal protein L37; This family includes yeast MRPL37 a mitochondrial ...
 67-130 6.91e-07

Mitochondrial ribosomal protein L37; This family includes yeast MRPL37 a mitochondrial ribosomal protein.


Pssm-ID: 430074  Cd Length: 88  Bit Score: 44.26  E-value: 6.91e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 157823956   67 THAMGVNIYKEGQEVALKPDSEYPTWLFQV-DLGPPKKLEDLEPES--------------REYWRLLRKQNIWRHNRLS 130
Cdd:pfam08561  10 TVLKGLNILKNGPDPVALEDSEYPDWLWTLlDDSKSKKQRELAAKRlrakaeaeepreelKKALRKARRAKIKENNFLK 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH