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Conserved domains on  [gi|157819475|ref|NP_001100066|]
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large ribosomal subunit protein bL35m [Rattus norvegicus]

Protein Classification

bL35 family ribosomal protein( domain architecture ID 10483198)

bL35 family ribosomal protein such as bacterial 50S ribosomal protein L35 that is involved in signal peptide recognition, and mammalian 39S ribosomal protein L35 as well as fungal 54S ribosomal protein bL35m, which are components of the mitoribosome

Gene Ontology:  GO:0006412|GO:0003735|GO:0015934
PubMed:  24524803
SCOP:  4003406

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L35p pfam01632
Ribosomal protein L35;
102-161 9.93e-13

Ribosomal protein L35;


:

Pssm-ID: 460273  Cd Length: 61  Bit Score: 60.07  E-value: 9.93e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819475  102 GKRKTVKSVVHRFLRLHSGLWLRRKAGYKKKLWKKSTARKKRLREFVFCNKTQSKLLDKM 161
Cdd:pfam01632   1 PKMKTHKGAAKRFKVTGSGKIKRRKAGKRHILTKKSTKRKRRLRKTVLVSKADAKRVKKL 60
 
Name Accession Description Interval E-value
Ribosomal_L35p pfam01632
Ribosomal protein L35;
102-161 9.93e-13

Ribosomal protein L35;


Pssm-ID: 460273  Cd Length: 61  Bit Score: 60.07  E-value: 9.93e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819475  102 GKRKTVKSVVHRFLRLHSGLWLRRKAGYKKKLWKKSTARKKRLREFVFCNKTQSKLLDKM 161
Cdd:pfam01632   1 PKMKTHKGAAKRFKVTGSGKIKRRKAGKRHILTKKSTKRKRRLRKTVLVSKADAKRVKKL 60
rpl35 CHL00103
ribosomal protein L35
 103-161 7.84e-03

ribosomal protein L35


Pssm-ID: 214367  Cd Length: 65  Bit Score: 33.52  E-value: 7.84e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 157819475 103 KRKTVKSVVHRFLRLHSGLWLRRKAGYKKKLWKKSTARKKRLREFVFCNKTQSKLLDKM 161
Cdd:CHL00103   3 KLKTRKAAAKRYKKTGNGKFLRRKAFKSHLLQKKSSKQKRKLSQTVCVSKGDSKSIKLM 61
 
Name Accession Description Interval E-value
Ribosomal_L35p pfam01632
Ribosomal protein L35;
102-161 9.93e-13

Ribosomal protein L35;


Pssm-ID: 460273  Cd Length: 61  Bit Score: 60.07  E-value: 9.93e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 157819475  102 GKRKTVKSVVHRFLRLHSGLWLRRKAGYKKKLWKKSTARKKRLREFVFCNKTQSKLLDKM 161
Cdd:pfam01632   1 PKMKTHKGAAKRFKVTGSGKIKRRKAGKRHILTKKSTKRKRRLRKTVLVSKADAKRVKKL 60
rpl35 CHL00103
ribosomal protein L35
 103-161 7.84e-03

ribosomal protein L35


Pssm-ID: 214367  Cd Length: 65  Bit Score: 33.52  E-value: 7.84e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 157819475 103 KRKTVKSVVHRFLRLHSGLWLRRKAGYKKKLWKKSTARKKRLREFVFCNKTQSKLLDKM 161
Cdd:CHL00103   3 KLKTRKAAAKRYKKTGNGKFLRRKAFKSHLLQKKSSKQKRKLSQTVCVSKGDSKSIKLM 61
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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