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Conserved domains on  [gi|157822441|ref|NP_001099488|]
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protein SPMIP7 isoform e [Rattus norvegicus]

Protein Classification

spermatogenesis associated 48( domain architecture ID 10633395)

spermatogenesis associated 48 (SPATA48) is a DUF4540 domain-containing protein, which in mice has been shown to be essential for spermatogenesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SPATA48 pfam15073
Spermatogenesis-associated protein 48; Spermatogenesis-associated protein 48 is also known as ...
 18-145 4.23e-78

Spermatogenesis-associated protein 48; Spermatogenesis-associated protein 48 is also known as post-meiotic spermatogenesis protein 1. Proteins in this family are typically between 109 and 302 amino acids in length. In humans, it is found in the chromosomal position, C7orf72.


:

Pssm-ID: 434439  Cd Length: 128  Bit Score: 227.35  E-value: 4.23e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157822441   18 VKPINFVSPSTRSKYIPLYTGHVQSTNADDVDNPYGDIKSVASPRHSKLLYTDTSRSANIPGYTGKVHFTATHPTNSNIP 97
Cdd:pfam15073   1 AKPINFVSPSSRSKYIPLYTGCVGATNADDVDNPKGDFYPLTKPRTSKPRYTNTSRRPNIPGYTGKVHFTATHPANSTIP 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 157822441   98 PTMPLSDSEMNRLLLQEMRVDRFRHQGPLSQMVTTVKPYNPFNRKEKE 145
Cdd:pfam15073  81 STTPSTTSEVHRTLPTSMNVSNHRHQGPLSKMVTTVPPYNPFNQKEKE 128
 
Name Accession Description Interval E-value
SPATA48 pfam15073
Spermatogenesis-associated protein 48; Spermatogenesis-associated protein 48 is also known as ...
 18-145 4.23e-78

Spermatogenesis-associated protein 48; Spermatogenesis-associated protein 48 is also known as post-meiotic spermatogenesis protein 1. Proteins in this family are typically between 109 and 302 amino acids in length. In humans, it is found in the chromosomal position, C7orf72.


Pssm-ID: 434439  Cd Length: 128  Bit Score: 227.35  E-value: 4.23e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157822441   18 VKPINFVSPSTRSKYIPLYTGHVQSTNADDVDNPYGDIKSVASPRHSKLLYTDTSRSANIPGYTGKVHFTATHPTNSNIP 97
Cdd:pfam15073   1 AKPINFVSPSSRSKYIPLYTGCVGATNADDVDNPKGDFYPLTKPRTSKPRYTNTSRRPNIPGYTGKVHFTATHPANSTIP 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 157822441   98 PTMPLSDSEMNRLLLQEMRVDRFRHQGPLSQMVTTVKPYNPFNRKEKE 145
Cdd:pfam15073  81 STTPSTTSEVHRTLPTSMNVSNHRHQGPLSKMVTTVPPYNPFNQKEKE 128
 
Name Accession Description Interval E-value
SPATA48 pfam15073
Spermatogenesis-associated protein 48; Spermatogenesis-associated protein 48 is also known as ...
 18-145 4.23e-78

Spermatogenesis-associated protein 48; Spermatogenesis-associated protein 48 is also known as post-meiotic spermatogenesis protein 1. Proteins in this family are typically between 109 and 302 amino acids in length. In humans, it is found in the chromosomal position, C7orf72.


Pssm-ID: 434439  Cd Length: 128  Bit Score: 227.35  E-value: 4.23e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157822441   18 VKPINFVSPSTRSKYIPLYTGHVQSTNADDVDNPYGDIKSVASPRHSKLLYTDTSRSANIPGYTGKVHFTATHPTNSNIP 97
Cdd:pfam15073   1 AKPINFVSPSSRSKYIPLYTGCVGATNADDVDNPKGDFYPLTKPRTSKPRYTNTSRRPNIPGYTGKVHFTATHPANSTIP 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 157822441   98 PTMPLSDSEMNRLLLQEMRVDRFRHQGPLSQMVTTVKPYNPFNRKEKE 145
Cdd:pfam15073  81 STTPSTTSEVHRTLPTSMNVSNHRHQGPLSKMVTTVPPYNPFNQKEKE 128
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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