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Conserved domains on  [gi|2002298153|ref|NP_001099432|]
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proteoglycan 4 precursor [Rattus norvegicus]

Protein Classification

SO and HX domain-containing protein( domain architecture ID 10640906)

SO and HX domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HX cd00094
Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. ...
 1013-1274 4.45e-39

Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.


:

Pssm-ID: 238046 [Multi-domain]  Cd Length: 194  Bit Score: 143.99  E-value: 4.45e-39
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153 1013 TNICNGKPVDGLTTLRnGTLVAFRGHYFWMLNPFRPPSPPRRITEVW-GIPSPIDTVFTRCNcEGKTFFFKDSQYWRFTN 1091
Cdd:cd00094      1 PDACDPLSFDAVTTLR-GELYFFKGRYFWRLSPGKPPGSPFLISSFWpSLPSPVDAAFERPD-TGKIYFFKGDKYWVYTG 78

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153 1092 DVMDAGYPKLIVK-GFGGLTGKIVAALSIAkykdRPESVYFFKrGGNIQQYTYKQEPVRKCTGRQPAinysvygqaaqvr 1170
Cdd:cd00094     79 KNLEPGYPKPISDlGFPPTVKQIDAALRWP----DNGKTYFFK-GDKYWRYDEKTQKMDPGYPKLIE------------- 140

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153 1171 rrrferavgpfqthtfrihysvpikasyqdkgflhnevkvsTLWRGFPNVVTSAitlpnIRKPDGYdYYAFSKDQYYNID 1250
Cdd:cd00094    141 -----------------------------------------TDFPGVPDKVDAA-----FRWLDGY-YYFFKGDQYWRFD 173

                          250       260
                   ....*....|....*....|....
gi 2002298153 1251 VPTRTARAITTRSGqtlSRVWYNC 1274
Cdd:cd00094    174 PRSKEVRVGYPLKI---SSDWLGC 194
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 315-724 1.27e-36

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 151.63  E-value: 1.27e-36
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  315 DVEPTSTTPKNSAPTTTKKPVTTTKEPVPTTTKGPEPTSKEPAPTTPKEPELTIPKEPAPTTKKPAPTTPKEPAPTTPKE 394
Cdd:PHA03247  2590 DAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARR 2669

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  395 PEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPT-TPKEPA-PTTPK 472
Cdd:PHA03247  2670 LGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPaAPAPPAvPAGPA 2749

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  473 EPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKE-PAPTTPKEPAPTTPKEPAPTtp 551
Cdd:PHA03247  2750 TPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADpPAAVLAPAAALPPAASPAGP-- 2827

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  552 kEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEP----APTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPA 627
Cdd:PHA03247  2828 -LPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDvrrrPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPE 2906

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  628 lTTPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPELTIPKEPVPtTPKEPAPTTPKEPAP---TTTKKP 704
Cdd:PHA03247  2907 -RPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVP-QPWLGALVPGRVAVPrfrVPQPAP 2984

                          410       420
                   ....*....|....*....|
gi 2002298153  705 ELSTPKEPTSTNPKEPEPTL 724
Cdd:PHA03247  2985 SREAPASSTPPLTGHSLSRV 3004
SO smart00201
Somatomedin B -like domains; Somatomedin-B is a peptide, proteolytically excised from ...
 26-68 1.68e-18

Somatomedin B -like domains; Somatomedin-B is a peptide, proteolytically excised from vitronectin, that is a growth hormone-dependent serum factor with protease-inhibiting activity.


:

Pssm-ID: 197571  Cd Length: 43  Bit Score: 80.11  E-value: 1.68e-18
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 2002298153    26 DISSCAGRCGEGYSRDATCNCDYNCQHYMECCPDFKRVCTTEL 68
Cdd:smart00201    1 AIGSCKGRCGESFNEGNACRCDALCLSYGDCCTDYESVCKKEV 43
Somatomedin_B pfam01033
Somatomedin B domain;
69-106 1.11e-17

Somatomedin B domain;


:

Pssm-ID: 460034  Cd Length: 40  Bit Score: 77.34  E-value: 1.11e-17
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 2002298153   69 SCKGRCFESFARGRECDCDSQCKQYGKCCADYNSFCEE 106
Cdd:pfam01033    2 SCKGRCGESFDRGRLCQCDDDCVKYGDCCPDYESLCLG 39
 
Name Accession Description Interval E-value
HX cd00094
Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. ...
 1013-1274 4.45e-39

Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.


Pssm-ID: 238046 [Multi-domain]  Cd Length: 194  Bit Score: 143.99  E-value: 4.45e-39
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153 1013 TNICNGKPVDGLTTLRnGTLVAFRGHYFWMLNPFRPPSPPRRITEVW-GIPSPIDTVFTRCNcEGKTFFFKDSQYWRFTN 1091
Cdd:cd00094      1 PDACDPLSFDAVTTLR-GELYFFKGRYFWRLSPGKPPGSPFLISSFWpSLPSPVDAAFERPD-TGKIYFFKGDKYWVYTG 78

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153 1092 DVMDAGYPKLIVK-GFGGLTGKIVAALSIAkykdRPESVYFFKrGGNIQQYTYKQEPVRKCTGRQPAinysvygqaaqvr 1170
Cdd:cd00094     79 KNLEPGYPKPISDlGFPPTVKQIDAALRWP----DNGKTYFFK-GDKYWRYDEKTQKMDPGYPKLIE------------- 140

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153 1171 rrrferavgpfqthtfrihysvpikasyqdkgflhnevkvsTLWRGFPNVVTSAitlpnIRKPDGYdYYAFSKDQYYNID 1250
Cdd:cd00094    141 -----------------------------------------TDFPGVPDKVDAA-----FRWLDGY-YYFFKGDQYWRFD 173

                          250       260
                   ....*....|....*....|....
gi 2002298153 1251 VPTRTARAITTRSGqtlSRVWYNC 1274
Cdd:cd00094    174 PRSKEVRVGYPLKI---SSDWLGC 194
PHA03247 PHA03247
large tegument protein UL36; Provisional
 315-724 1.27e-36

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 151.63  E-value: 1.27e-36
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  315 DVEPTSTTPKNSAPTTTKKPVTTTKEPVPTTTKGPEPTSKEPAPTTPKEPELTIPKEPAPTTKKPAPTTPKEPAPTTPKE 394
Cdd:PHA03247  2590 DAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARR 2669

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  395 PEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPT-TPKEPA-PTTPK 472
Cdd:PHA03247  2670 LGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPaAPAPPAvPAGPA 2749

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  473 EPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKE-PAPTTPKEPAPTTPKEPAPTtp 551
Cdd:PHA03247  2750 TPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADpPAAVLAPAAALPPAASPAGP-- 2827

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  552 kEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEP----APTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPA 627
Cdd:PHA03247  2828 -LPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDvrrrPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPE 2906

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  628 lTTPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPELTIPKEPVPtTPKEPAPTTPKEPAP---TTTKKP 704
Cdd:PHA03247  2907 -RPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVP-QPWLGALVPGRVAVPrfrVPQPAP 2984

                          410       420
                   ....*....|....*....|
gi 2002298153  705 ELSTPKEPTSTNPKEPEPTL 724
Cdd:PHA03247  2985 SREAPASSTPPLTGHSLSRV 3004
SO smart00201
Somatomedin B -like domains; Somatomedin-B is a peptide, proteolytically excised from ...
 26-68 1.68e-18

Somatomedin B -like domains; Somatomedin-B is a peptide, proteolytically excised from vitronectin, that is a growth hormone-dependent serum factor with protease-inhibiting activity.


Pssm-ID: 197571  Cd Length: 43  Bit Score: 80.11  E-value: 1.68e-18
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 2002298153    26 DISSCAGRCGEGYSRDATCNCDYNCQHYMECCPDFKRVCTTEL 68
Cdd:smart00201    1 AIGSCKGRCGESFNEGNACRCDALCLSYGDCCTDYESVCKKEV 43
Somatomedin_B pfam01033
Somatomedin B domain;
69-106 1.11e-17

Somatomedin B domain;


Pssm-ID: 460034  Cd Length: 40  Bit Score: 77.34  E-value: 1.11e-17
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 2002298153   69 SCKGRCFESFARGRECDCDSQCKQYGKCCADYNSFCEE 106
Cdd:pfam01033    2 SCKGRCGESFDRGRLCQCDDDCVKYGDCCPDYESLCLG 39
Streccoc_I_II NF033804
antigen I/II family LPXTG-anchored adhesin; Members of the antigen I/II family are adhesins ...
 522-667 3.41e-17

antigen I/II family LPXTG-anchored adhesin; Members of the antigen I/II family are adhesins with a glucan-binding domain, two types of repetitive regions, an isopeptide bond-forming domain associated with shear resistance, and a C-terminal LPXTG motif for anchoring to the cell wall. They occur in oral Streptococci, and tend to be major cell surface adhesins. Members of this family include SspA and SspB from Streptococcus gordonii, antigen I/II from S. mutans, etc.


Pssm-ID: 468188 [Multi-domain]  Cd Length: 1552  Bit Score: 87.69  E-value: 3.41e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  522 PAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAP--TTPKEPVPTTPKEPASTT--PKEPAPTTP---KEP 594
Cdd:NF033804   825 PKITKEKPTPPVAPTAPQAPTYEVEKPLEPAPVAPTYENEPTPpvKTPDQPEPSKPEEPTYETekPLEPAPVAPtyeNEP 904

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2002298153  595 AP--TTPKEPAPTTPKEPAPTT--PKEPAPTTPKEPALTTPkePAPTPKEPEPTTPKEPApttpKEPAPTTPKEPAP 667
Cdd:NF033804   905 TPpvKTPDQPEPSKPEEPTYETekPLEPAPVAPSYENEPTP--PVKTPDQPEPSKPVEPT----YDPLPTPPVAPTP 975
SO smart00201
Somatomedin B -like domains; Somatomedin-B is a peptide, proteolytically excised from ...
 67-108 4.43e-17

Somatomedin B -like domains; Somatomedin-B is a peptide, proteolytically excised from vitronectin, that is a growth hormone-dependent serum factor with protease-inhibiting activity.


Pssm-ID: 197571  Cd Length: 43  Bit Score: 75.87  E-value: 4.43e-17
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 2002298153    67 ELSCKGRCFESFARGRECDCDSQCKQYGKCCADYNSFCEEVH 108
Cdd:smart00201    2 IGSCKGRCGESFNEGNACRCDALCLSYGDCCTDYESVCKKEV 43
Somatomedin_B pfam01033
Somatomedin B domain;
29-67 4.66e-16

Somatomedin B domain;


Pssm-ID: 460034  Cd Length: 40  Bit Score: 72.72  E-value: 4.66e-16
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 2002298153   29 SCAGRCGEGYSRDATCNCDYNCQHYMECCPDFKRVCTTE 67
Cdd:pfam01033    2 SCKGRCGESFDRGRLCQCDDDCVKYGDCCPDYESLCLGE 40
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 352-716 1.18e-12

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 72.11  E-value: 1.18e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  352 TSKEPAPTTPKEPELTIPKEPAPTTKkPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTT 431
Cdd:NF033839   155 SSTKPETPQPENPEHQKPTTPAPDTK-PSPQPEGKKPSVPDINQEKEKAKLAVATYMSKILDDIQKHHLQKEKHRQIVAL 233

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  432 PKEPAPTTPK-----EPAPTTKKPEPTTPKEPAPTTP------KEPAPTTPKEPApnTPKEPAPTTPKEPAPTTPKEPES 500
Cdd:NF033839   234 IKELDELKKQalseiDNVNTKVEIENTVHKIFADMDAvvtkfkKGLTQDTPKEPG--NKKPSAPKPGMQPSPQPEKKEVK 311

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  501 TTPKEPAP-TTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPK-EPAPTTPKEPAPTTPKEPVPTTPKEP 578
Cdd:NF033839   312 PEPETPKPeVKPQLEKPKPEVKPQPEKPKPEVKPQLETPKPEVKPQPEKPKPEvKPQPEKPKPEVKPQPETPKPEVKPQP 391

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  579 ASTTPK-EPAPTTPKEPAPTTPKEPAPTTPKEPAPTTP-KEPAPTTPKEPALTTPKEPAPTPKePEPTTPK---EPAPTT 653
Cdd:NF033839   392 EKPKPEvKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPeVKPQPEKPKPEVKPQPEKPKPEVK-PQPETPKpevKPQPEK 470

                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2002298153  654 PKEPAPTTPKEPAPTTKKPELTIPKEPVPTT-PKEPAPTTPKEPAPTTTKKPELSTPKEPTSTN 716
Cdd:NF033839   471 PKPEVKPQPEKPKPDNSKPQADDKKPSTPNNlSKDKQPSNQASTNEKATNKPKKSLPSTGSISN 534
Not5 COG5665
CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription];
239-654 1.42e-12

CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription];


Pssm-ID: 444384 [Multi-domain]  Cd Length: 874  Bit Score: 72.39  E-value: 1.42e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  239 NKVTASPKTTAAKPVTPkpSLAPNSETSKEASSTSNKETTVETKETTETNkqSSASKKEKTTSAKETRSAENTSAKDVEP 318
Cdd:COG5665    167 NPVAVVVTTMIAVPSAP--AAPPNAVDYSVLVPIAAQDPAASVSTPQAFN--ASATSGRSQHIVQAAKRVGVEWWGDPSL 242

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  319 TSTTPKNSAPTTTKKPVTTTKEPVPTTTKGPEPTSKEPAPTTPKEPELTIPkePAPTTKKPAPTTPKEPAPTTPKEP--- 395
Cdd:COG5665    243 LATPPATPATEEKSSQQPKSQPTSPSGGTTPPSTNQLTTSNTPTSTAKAQP--QPPTKKQPAKEPPSDTASGNPSAPsvl 320

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  396 -EPTTPKESAPTTPKepAPTTPKEPAPTTPKEpAPTTPKEpaPTTPKEPAPTtkkpePTTPKEPAPTTPKEPAPTTPKEP 474
Cdd:COG5665    321 iNSDSPTSEDPATAS--VPTTEETTAFTTPSS-VPSTPAE--KDTPATDLAT-----PVSPTPPETSVDKKVSPDSATSS 390

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  475 apnTPKEPAPTTPKEPapttpkEPESTTPKEPAPTTPKEPAPTTpKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEP 554
Cdd:COG5665    391 ---TKSEKEGGTASSP------MPPNIAIGAKDDVDATDPSQEA-KEYTKNAPMTPEADSAPESSVRTEASPSAGSDLEP 460

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  555 APTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPkePAPTTPKEPAPTTPKEPAPTTP-----KEPAPTTPKEPALT 629
Cdd:COG5665    461 ENTTLRDPAPNAIPPPEDPSTIGRLSSGDKLANETGP--PVIRRDSTPSSTADQSIVGVLAfgldqRTQAEISVEAASRS 538

                          410       420
                   ....*....|....*....|....*
gi 2002298153  630 TPKEPAPTPKEPEPTTPKEPAPTTP 654
Cdd:COG5665    539 NPLLNSQVKSFPLGKRSEGAKGKTQ 563
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
 451-567 3.13e-12

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteriztic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 65.07  E-value: 3.13e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  451 EPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEP 530
Cdd:pfam02389    7 QPCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVP 86

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 2002298153  531 APTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTP 567
Cdd:pfam02389   87 EPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
HX smart00120
Hemopexin-like repeats; Hemopexin is a heme-binding protein that transports heme to the liver. ...
 1065-1109 1.34e-11

Hemopexin-like repeats; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs).


Pssm-ID: 214524 [Multi-domain]  Cd Length: 45  Bit Score: 60.33  E-value: 1.34e-11
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*
gi 2002298153  1065 IDTVFTRCNceGKTFFFKDSQYWRFTNDVMDAGYPKLIVKGFGGL 1109
Cdd:smart00120    1 IDAAFELRD--GKTYFFKGDKYWRFDPKRVDPGYPKLISSFFPGL 43
Hemopexin pfam00045
Hemopexin; Hemopexin is a heme-binding protein that transports heme to the liver. ...
 1065-1102 2.85e-09

Hemopexin; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metallopeptidases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metallopeptidases (TIMPs).


Pssm-ID: 395000 [Multi-domain]  Cd Length: 44  Bit Score: 53.72  E-value: 2.85e-09
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 2002298153 1065 IDTVFTRCNceGKTFFFKDSQYWRFTNDVMDAGYPKLI 1102
Cdd:pfam00045    1 IDAAFEDRD--GKTYFFKGRKYWRFDPQRVEPGYPKLI 36
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 426-567 5.94e-09

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 59.40  E-value: 5.94e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  426 EPAPTTPKEPAPTTPK-EPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPK 504
Cdd:NF040712   189 DPDFGRPLRPLATVPRlAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQPEDEPVGPGAAPAA 268

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2002298153  505 EPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTP---KEPAPTTP 567
Cdd:NF040712   269 EPDEATRDAGEPPAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPAPKpkrRRRRASVP 334
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 481-623 1.39e-08

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 58.24  E-value: 1.39e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  481 EPAPTTPKEPAPTTPKE---PESTTPKEPAPTTPKEPAPTTPKEPAPT-TPKEPAPTTPKEPAPTTPKEPAPTTPKEPAP 556
Cdd:NF040712   189 DPDFGRPLRPLATVPRLarePADARPEEVEPAPAAEGAPATDSDPAEAgTPDDLASARRRRAGVEQPEDEPVGPGAAPAA 268

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  557 ttpkEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTP---KEPAPTTP 623
Cdd:NF040712   269 ----EPDEATRDAGEPPAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPAPKpkrRRRRASVP 334
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 450-591 3.51e-08

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 57.08  E-value: 3.51e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  450 PEPTTPKEPAPTTPKE---PAPTTPKEPAPNTPKEPAPTTPKEPAPT-TPKEPESTTPKEPAPTTPKEPAPTTPKEPAPt 525
Cdd:NF040712   190 PDFGRPLRPLATVPRLarePADARPEEVEPAPAAEGAPATDSDPAEAgTPDDLASARRRRAGVEQPEDEPVGPGAAPAA- 268

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2002298153  526 tpkEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPA-PTTPKEPVPTTPKEPASTTPKEPA--PTTP 591
Cdd:NF040712   269 ---EPDEATRDAGEPPAPGAAETPEAAEPPAPAPAAPAaPAAPEAEEPARPEPPPAPKPKRRRrrASVP 334
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 407-551 6.18e-08

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 56.31  E-value: 6.18e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  407 TPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPtt 486
Cdd:NF040712   191 DFGRPLRPLATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQPEDEPVGPGAAPAA-- 268

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2002298153  487 pkEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTP---KEPAPTTP 551
Cdd:NF040712   269 --EPDEATRDAGEPPAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPAPKpkrRRRRASVP 334
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 505-639 7.44e-08

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 55.93  E-value: 7.44e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  505 EPAPTTPKEPAPTTPKE---PAPTTPKEPAPTTPKEPAPTTPKEPAPT-TPKEPAPTTPKEPAPTTPKEPVPTTPKEPAS 580
Cdd:NF040712   189 DPDFGRPLRPLATVPRLarePADARPEEVEPAPAAEGAPATDSDPAEAgTPDDLASARRRRAGVEQPEDEPVGPGAAPAA 268

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 2002298153  581 ttpkEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPK 639
Cdd:NF040712   269 ----EPDEATRDAGEPPAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPAPK 323
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 363-519 9.20e-08

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 55.54  E-value: 9.20e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  363 EPELTIPKEPAPTTKKPAPttpkEPAPTTPKEPEPTTPKESAPTTPKEPAPT-TPKEPAPTTPKEPAPTTPKEPAPTTPK 441
Cdd:NF040712   189 DPDFGRPLRPLATVPRLAR----EPADARPEEVEPAPAAEGAPATDSDPAEAgTPDDLASARRRRAGVEQPEDEPVGPGA 264

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  442 EPAPttkkpepttpkEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTP---KEPAPTT 518
Cdd:NF040712   265 APAA-----------EPDEATRDAGEPPAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPAPKpkrRRRRASV 333


                   .
gi 2002298153  519 P 519
Cdd:NF040712   334 P 334
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 309-558 9.30e-08

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 56.32  E-value: 9.30e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  309 ENTSAKDVEPTSTTPKNSAPTTTKKPVTTTKEPVPTTTKGPEPTSKEPAPTTPKEPELTIPKEPAPTTKKPAPTTPKEPA 388
Cdd:NF033839   281 QDTPKEPGNKKPSAPKPGMQPSPQPEKKEVKPEPETPKPEVKPQLEKPKPEVKPQPEKPKPEVKPQLETPKPEVKPQPEK 360

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  389 PTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPK-EPAPTTPKEPAPTTPKEPAPTTkKPEPTTPKEPAPTTPKEPA 467
Cdd:NF033839   361 PKPEVKPQPEKPKPEVKPQPETPKPEVKPQPEKPKPEvKPQPEKPKPEVKPQPEKPKPEV-KPQPEKPKPEVKPQPEKPK 439

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  468 PTTpkEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPK-EPAPTTPK-EPAPTTPKEPAPTTPKEPAPTTPKEPAPTTpKE 545
Cdd:NF033839   440 PEV--KPQPEKPKPEVKPQPETPKPEVKPQPEKPKPEvKPQPEKPKpDNSKPQADDKKPSTPNNLSKDKQPSNQAST-NE 516

                          250
                   ....*....|...
gi 2002298153  546 PAPTTPKEPAPTT 558
Cdd:NF033839   517 KATNKPKKSLPST 529
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 473-615 1.66e-07

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 54.77  E-value: 1.66e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  473 EPAPNTPKEPAPTTPKE---PAPTTPKEPESTTPKEPAPTTPKEPAPT-TPKEPAPTTPKEPAPTTPKEPAPTTPKEPAP 548
Cdd:NF040712   189 DPDFGRPLRPLATVPRLarePADARPEEVEPAPAAEGAPATDSDPAEAgTPDDLASARRRRAGVEQPEDEPVGPGAAPAA 268

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  549 ttpkEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTP---KEPAPTTP 615
Cdd:NF040712   269 ----EPDEATRDAGEPPAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPAPKpkrRRRRASVP 334
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 521-662 1.69e-07

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 54.77  E-value: 1.69e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  521 EPAPTTPKEPAPTTPKE---PAPTTPKEPAPTTPKEPAPTTPKEPAPT-TPKEPVPTTPKEPASTTPKEPAPTTPKEPAP 596
Cdd:NF040712   189 DPDFGRPLRPLATVPRLarePADARPEEVEPAPAAEGAPATDSDPAEAgTPDDLASARRRRAGVEQPEDEPVGPGAAPAA 268

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  597 ttpkEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPT--PKEPEPTTPKEPAPTTPKEPA--PTTP 662
Cdd:NF040712   269 ----EPDEATRDAGEPPAPGAAETPEAAEPPAPAPAAPAAPaaPEAEEPARPEPPPAPKPKRRRrrASVP 334
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 457-599 1.99e-07

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 54.77  E-value: 1.99e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  457 EPAPTTPKEPAPTTPKE---PAPNTPKEPAPTTPKEPAPTTPKEPEST-TPKEPAPTTPKEPAPTTPKEPAPTTPKEPAP 532
Cdd:NF040712   189 DPDFGRPLRPLATVPRLarePADARPEEVEPAPAAEGAPATDSDPAEAgTPDDLASARRRRAGVEQPEDEPVGPGAAPAA 268

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  533 ttpkEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTP---KEPAPTTP 599
Cdd:NF040712   269 ----EPDEATRDAGEPPAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPAPKpkrRRRRASVP 334
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 386-535 4.43e-07

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 53.62  E-value: 4.43e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  386 EPAPTTPKEPEPTTPKESAPTTPKEPAPTtpkEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKE 465
Cdd:NF040712   189 DPDFGRPLRPLATVPRLAREPADARPEEV---EPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQPEDEPVGPGAA 265

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2002298153  466 PAPttpkEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTP---KEPAPTTP 535
Cdd:NF040712   266 PAA----EPDEATRDAGEPPAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPAPKpkrRRRRASVP 334
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 545-693 7.14e-07

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 52.85  E-value: 7.14e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  545 EPAPTTPKEPAPTTPKE---PAPTTPKEPVPTTPKEPASTTPKEPAPT-TPKEPAPTTPKEPAPTTPKEPAPTTPKEPAP 620
Cdd:NF040712   189 DPDFGRPLRPLATVPRLarePADARPEEVEPAPAAEGAPATDSDPAEAgTPDDLASARRRRAGVEQPEDEPVGPGAAPAA 268

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2002298153  621 TTPKEpalTTPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAPTTKkpeltiPKEPVPTTPKEPA--PTTP 693
Cdd:NF040712   269 EPDEA---TRDAGEPPAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPAR------PEPPPAPKPKRRRrrASVP 334
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 529-677 1.09e-06

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 52.46  E-value: 1.09e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  529 EPAPTTPKEPAPTTPKE---PAPTTPKEPAPTTPKEPAPTTPKEPVPT-TPKEPASTTPKEPAPTTPKEPAPTTPKEPAP 604
Cdd:NF040712   189 DPDFGRPLRPLATVPRLarePADARPEEVEPAPAAEGAPATDSDPAEAgTPDDLASARRRRAGVEQPEDEPVGPGAAPAA 268

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2002298153  605 ttpkEPAPTTPKEPAPTTPKEPALTTPKEPAPtPKEPEPTTPKEPAPTTPKEPAPttPKEPAPTTKKPELTIP 677
Cdd:NF040712   269 ----EPDEATRDAGEPPAPGAAETPEAAEPPA-PAPAAPAAPAAPEAEEPARPEP--PPAPKPKRRRRRASVP 334
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 355-495 1.30e-06

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 52.08  E-value: 1.30e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  355 EPAPTTPkEPELTIPKEPAPTtkkPAPTTPKEPAPTTPKEPEPTTPKESAPT-TPKEPAPTTPKEPAPTTPKEPAPTTPK 433
Cdd:NF040712   189 DPDFGRP-LRPLATVPRLARE---PADARPEEVEPAPAAEGAPATDSDPAEAgTPDDLASARRRRAGVEQPEDEPVGPGA 264

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  434 EPAP-----TTPKEPAPTTKKPEPTTPKEPAPTTPKEPA-PTTPKEPAPNTPKEPAPTTPKEPA--PTTP 495
Cdd:NF040712   265 APAAepdeaTRDAGEPPAPGAAETPEAAEPPAPAPAAPAaPAAPEAEEPARPEPPPAPKPKRRRrrASVP 334
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 434-578 3.00e-06

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 50.92  E-value: 3.00e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  434 EPAPTTPKEPAPTTKKPEPttpkEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPkePAPTTPKEPESTTPKEPAPTTPKE 513
Cdd:NF040712   189 DPDFGRPLRPLATVPRLAR----EPADARPEEVEPAPAAEGAPATDSDPAEAGT--PDDLASARRRRAGVEQPEDEPVGP 262

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2002298153  514 PAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEP 578
Cdd:NF040712   263 GAAPAAEPDEATRDAGEPPAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPAPKPKRR 327
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 459-521 3.37e-06

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 51.05  E-value: 3.37e-06
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2002298153  459 APTTPKEPAPTTPKEPAPNTPkePAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKE 521
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPP--ASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 561-722 1.52e-05

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 48.61  E-value: 1.52e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  561 EPAPTTPKEPVPTTPKEPasttpKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPkePAPTTPKEPALTTPKEPAPTPKE 640
Cdd:NF040712   189 DPDFGRPLRPLATVPRLA-----REPADARPEEVEPAPAAEGAPATDSDPAEAGT--PDDLASARRRRAGVEQPEDEPVG 261

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  641 PEPTTPKEPAPTTPKEPAPTTPKEPAPTTkkpeltiPKEPVPTTPKEPAPTTpkEPAPTTTKKPELSTPKEPTSTNPKEP 720
Cdd:NF040712   262 PGAAPAAEPDEATRDAGEPPAPGAAETPE-------AAEPPAPAPAAPAAPA--APEAEEPARPEPPPAPKPKRRRRRAS 332


                   ..
gi 2002298153  721 EP 722
Cdd:NF040712   333 VP 334
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 489-781 1.66e-05

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 49.00  E-value: 1.66e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  489 EPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPK 568
Cdd:NF033839   158 KPETPQPENPEHQKPTTPAPDTKPSPQPEGKKPSVPDINQEKEKAKLAVATYMSKILDDIQKHHLQKEKHRQIVALIKEL 237

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  569 EPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKE 648
Cdd:NF033839   238 DELKKQALSEIDNVNTKVEIENTVHKIFADMDAVVTKFKKGLTQDTPKEPGNKKPSAPKPGMQPSPQPEKKEVKPEPETP 317

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  649 PAPTTPKEPAPTTPKEPAPTTKKPE----LTIPKEPVPTTPKEPAPTTPKEP-APTTTKKPELSTPKEPTSTNPKEPEPT 723
Cdd:NF033839   318 KPEVKPQLEKPKPEVKPQPEKPKPEvkpqLETPKPEVKPQPEKPKPEVKPQPeKPKPEVKPQPETPKPEVKPQPEKPKPE 397

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 2002298153  724 LPKEPEltLPEEPEPSNPETSDELIAELAEAPTPKALENNPKEPTVPTETPEVSKPEM 781
Cdd:NF033839   398 VKPQPE--KPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEV 453
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 579-668 1.27e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 46.15  E-value: 1.27e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  579 ASTTPKEPAPTTPKEPAPTTPKEPAPTTPkepaPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEPAPTTPKEPA 658
Cdd:NF041121    12 AAQMGRAAAPPSPEGPAPTAASQPATPPP----PAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPPPPPPPGPAGAAPGA 87

                           90
                   ....*....|
gi 2002298153  659 PTTPKEPAPT 668
Cdd:NF041121    88 ALPVRVPAPP 97
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 348-476 1.59e-04

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 45.53  E-value: 1.59e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  348 GPEPTSKEPAPTTPKEPELTIPKEPAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPttpkEPAPTTPKEPAPTTPKEP 427
Cdd:NF040712   211 DARPEEVEPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQPEDEPVGPGAAPAA----EPDEATRDAGEPPAPGAA 286

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*....
gi 2002298153  428 APTTPKEPAPTTPKEPAPTTKkPEPTTPKEPAPTTPKEPAPTTPKEPAP 476
Cdd:NF040712   287 ETPEAAEPPAPAPAAPAAPAA-PEAEEPARPEPPPAPKPKRRRRRASVP 334
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 427-509 1.81e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 45.76  E-value: 1.81e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  427 PAPTTPKEPAPTTPKEPAPTtkkPEPTTPKEPAPTTPKEPAPTTPKEPAPnTPKEPAPTTPKEPAPTTPKEPESTTPKEP 506
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATP---PPPAAPPSPPGDPPEPPAPEPAPLPAP-YPGSLAPPPPPPPGPAGAAPGAALPVRVP 94


                   ...
gi 2002298153  507 APT 509
Cdd:NF041121    95 APP 97
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 450-533 2.32e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 45.38  E-value: 2.32e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  450 PEPTTPKEPAPTTPKEPAPttpkePAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 529
Cdd:NF041121    19 AAPPSPEGPAPTAASQPAT-----PPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPPPPPPPGPAGAAPGAALPVRV 93


                   ....
gi 2002298153  530 PAPT 533
Cdd:NF041121    94 PAPP 97
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
 362-504 2.34e-04

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 468201 [Multi-domain]  Cd Length: 684  Bit Score: 45.39  E-value: 2.34e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  362 KEPELTIPKEPAPTTKKPAPTtPKEPAPTTPKEPEPTTpKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPttpk 441
Cdd:NF033838   351 KEAELELVKEEAKEPRNEEKI-KQAKAKVESKKAEATR-LEKIKTDRKKAEEEAKRKAAEEDKVKEKPAEQPQPAP---- 424

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2002298153  442 epAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEP-APNTPKEPAPTTPKEPaPTTPKEPESTTPK 504
Cdd:NF033838   425 --APQPEKPAPKPEKPAEQPKAEKPADQQAEEDyARRSEEEYNRLTQQQP-PKTEKPAQPSTPK 485
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 466-549 2.48e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 44.99  E-value: 2.48e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  466 PAPTTPKEPAPNTPKEPAPTTPkepaPTTPKEPESTTPKEPAPTTPKEPAPtTPKEPAPTTPKEPAPTTPKEPAPTTPKE 545
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATPPP----PAAPPSPPGDPPEPPAPEPAPLPAP-YPGSLAPPPPPPPGPAGAAPGAALPVRV 93


                   ....
gi 2002298153  546 PAPT 549
Cdd:NF041121    94 PAPP 97
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 610-691 2.64e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 44.99  E-value: 2.64e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  610 PAPTTPKEPAPTTPKEPALTTPkepaPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPELTIPKEPVPTTP-KEP 688
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATPPP----PAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPPPPPPPGPAGAAPGAALPvRVP 94


                   ...
gi 2002298153  689 APT 691
Cdd:NF041121    95 APP 97
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 482-565 3.03e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 44.99  E-value: 3.03e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  482 PAPTTPKEPAPTTPKEPESTTPkepaPTTPKEPAPTTPKEPAPTTPKEPAPtTPKEPAPTTPKEPAPTTPKEPAPTTPKE 561
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATPPP----PAAPPSPPGDPPEPPAPEPAPLPAP-YPGSLAPPPPPPPGPAGAAPGAALPVRV 93


                   ....
gi 2002298153  562 PAPT 565
Cdd:NF041121    94 PAPP 97
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
 576-647 3.13e-04

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 468201 [Multi-domain]  Cd Length: 684  Bit Score: 45.00  E-value: 3.13e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2002298153  576 KEPASTTPKePAPTT-PKEPAPTTPKEPAPTTPKEPAPTTPKEP-APTTPKEPALTTPKEPAPTPKEPEPTTPK 647
Cdd:NF033838   413 KEKPAEQPQ-PAPAPqPEKPAPKPEKPAEQPKAEKPADQQAEEDyARRSEEEYNRLTQQQPPKTEKPAQPSTPK 485
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 546-633 3.27e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 44.61  E-value: 3.27e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  546 PAPTTPKEPAPTTPKEPAPTTP---KEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPtt 622
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATPPPpaaPPSPPGDPPEPPAPEPAPLPAPYPGSLAPPPPPPPGPAGAAPGAALPVRVPAP-- 96

                           90
                   ....*....|.
gi 2002298153  623 pkePALTTPKE 633
Cdd:NF041121    97 ---PALPNPLE 104
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 554-638 3.33e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 44.61  E-value: 3.33e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  554 PAPTTPKEPAPTTPkePVPTTPKEPASTtpkEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKE 633
Cdd:NF041121    19 AAPPSPEGPAPTAA--SQPATPPPPAAP---PSPPGDPPEPPAPEPAPLPAPYPGSLAPPPPPPPGPAGAAPGAALPVRV 93


                   ....*
gi 2002298153  634 PAPTP 638
Cdd:NF041121    94 PAPPA 98
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
 346-456 3.97e-04

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 468201 [Multi-domain]  Cd Length: 684  Bit Score: 44.62  E-value: 3.97e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  346 TKGPEPTSKEPAPTTPKEPELTIPKEPAPTTK-KPAPTTPKEPAPTtpkePEPTTPkesAPTTPKEPAPTTPKEPAPTTP 424
Cdd:NF033838   380 SKKAEATRLEKIKTDRKKAEEEAKRKAAEEDKvKEKPAEQPQPAPA----PQPEKP---APKPEKPAEQPKAEKPADQQA 452

                           90       100       110
                   ....*....|....*....|....*....|...
gi 2002298153  425 KEP-APTTPKEPAPTTPKEPAPTTKKPEPTTPK 456
Cdd:NF033838   453 EEDyARRSEEEYNRLTQQQPPKTEKPAQPSTPK 485
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 458-541 4.73e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 44.22  E-value: 4.73e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  458 PAPTTPKEPAPTTPKEPAPNTPKEPAPttpkePAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 537
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATPPPPAAPP-----SPPGDPPEPPAPEPAPLPAPYPGSLAPPPPPPPGPAGAAPGAALPVRV 93


                   ....
gi 2002298153  538 PAPT 541
Cdd:NF041121    94 PAPP 97
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 506-589 4.81e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 44.22  E-value: 4.81e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  506 PAPTTPKEPAPTTPKEPAPTTPkepaPTTPKEPAPTTPKEPAPTTPKEPAPtTPKEPAPTTPKEPVPTTPKEPASTTPKE 585
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATPPP----PAAPPSPPGDPPEPPAPEPAPLPAP-YPGSLAPPPPPPPGPAGAAPGAALPVRV 93


                   ....
gi 2002298153  586 PAPT 589
Cdd:NF041121    94 PAPP 97
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 530-613 7.15e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 43.84  E-value: 7.15e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  530 PAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPkepasTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 609
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATPPPPAAPPSPPGDPPEPPAPEPAPLPA-----PYPGSLAPPPPPPPGPAGAAPGAALPVRV 93


                   ....
gi 2002298153  610 PAPT 613
Cdd:NF041121    94 PAPP 97
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 403-485 7.40e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 43.45  E-value: 7.40e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  403 SAPTTPKEPAPTTPKEPAPTTPkepaPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEP 482
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATPPP----PAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPPPPPPPGPAGAAPGAALPVRVP 94


                   ...
gi 2002298153  483 APT 485
Cdd:NF041121    95 APP 97
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 387-469 9.01e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 43.45  E-value: 9.01e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  387 PAPTTPKEPEPTTPkeSAPTTPKEPAPTtpkEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTP-KE 465
Cdd:NF041121    19 AAPPSPEGPAPTAA--SQPATPPPPAAP---PSPPGDPPEPPAPEPAPLPAPYPGSLAPPPPPPPGPAGAAPGAALPvRV 93


                   ....
gi 2002298153  466 PAPT 469
Cdd:NF041121    94 PAPP 97
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 411-493 9.74e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 43.07  E-value: 9.74e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  411 PAPTTPKEPAPTTPKEPAPTtpkEPAPTTPKEPAPTTKKPEPTTPKEPAPTtPKEPAPTTPKEPAPNTPKEPAPTTPKEP 490
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATP---PPPAAPPSPPGDPPEPPAPEPAPLPAPY-PGSLAPPPPPPPGPAGAAPGAALPVRVP 94


                   ...
gi 2002298153  491 APT 493
Cdd:NF041121    95 APP 97
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 379-461 9.90e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 43.07  E-value: 9.90e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  379 PAPTTPKEPAPTTPKEPEPTTPkesaPTTPKEPAPTTPKEPAPTTPKEPAPtTPKEPAPTTPKEPAPTTKKPEPTTP-KE 457
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATPPP----PAAPPSPPGDPPEPPAPEPAPLPAP-YPGSLAPPPPPPPGPAGAAPGAALPvRV 93


                   ....
gi 2002298153  458 PAPT 461
Cdd:NF041121    94 PAPP 97
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 514-597 1.02e-03

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 43.07  E-value: 1.02e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  514 PAPTTPKEPAPTTPKEPAPTTPkepaPTTPKEPAPTTPKEPAPTTPKEPAPtTPKEPVPTTPKEPASTTPKEPAPTTPKE 593
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATPPP----PAAPPSPPGDPPEPPAPEPAPLPAP-YPGSLAPPPPPPPGPAGAAPGAALPVRV 93


                   ....
gi 2002298153  594 PAPT 597
Cdd:NF041121    94 PAPP 97
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 474-557 1.18e-03

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 43.07  E-value: 1.18e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  474 PAPNTPKEPAPTTPKEPAPTtpkePESTTPKEPAPTTPKEPAPTTPKEPAPtTPKEPAPTTPKEPAPTTPKEPAPTTPKE 553
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATP----PPPAAPPSPPGDPPEPPAPEPAPLPAP-YPGSLAPPPPPPPGPAGAAPGAALPVRV 93


                   ....
gi 2002298153  554 PAPT 557
Cdd:NF041121    94 PAPP 97
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 435-517 2.82e-03

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 41.91  E-value: 2.82e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  435 PAPTTPKEPAPTTKkPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKepesTTPKEPAPTTP-KE 513
Cdd:NF041121    19 AAPPSPEGPAPTAA-SQPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPPPPPPPG----PAGAAPGAALPvRV 93


                   ....
gi 2002298153  514 PAPT 517
Cdd:NF041121    94 PAPP 97
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 369-446 3.27e-03

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 41.53  E-value: 3.27e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  369 PKEPAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTT---PKEPAPTTPKEPAPTTPKEPAPTTPKEPAP 445
Cdd:NF041121    17 RAAAPPSPEGPAPTAASQPATPPPPAAPPSPPGDPPEPPAPEPAPLPapyPGSLAPPPPPPPGPAGAAPGAALPVRVPAP 96


                   .
gi 2002298153  446 T 446
Cdd:NF041121    97 P 97
wall_bind_EntB NF040676
cell wall-binding protein EntB; This HMM describes the cell wall-binding protein EntB, as ...
 357-601 3.65e-03

cell wall-binding protein EntB; This HMM describes the cell wall-binding protein EntB, as found in Bacillus cereus. EntB is related to EntA, EntC, and EndD. All Ent family proteins have a signal peptide, an N-terminal SH3 domain and a C-terminal 3D (Asp-Asp-Asp) domain. EntB and EndC have a central region with a highly variable number of repeats resembling KAXEXX. The gene symbol derives from the notion that at least some members of the family function as enterotoxins, but more recent descriptions focus on roles in stress response and cell wall integrity.


Pssm-ID: 468642 [Multi-domain]  Cd Length: 476  Bit Score: 41.31  E-value: 3.65e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  357 APTTPKEPELT--IPK-EPAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPApttpK 433
Cdd:NF040676   145 APTEKKADEKTkqVAKvQKSVKAKEEAKTQKVAKAKETTKAQEIVKPKEEVKVQEVVKPKEEPKVQEIVKPKEEV----K 220

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  434 EPAPTTPKEpapTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTtpKE 513
Cdd:NF040676   221 VQEEVKPKE---EEKVQEIVKPKEEAKVQEEVKVKEEAKVQEIAKAKEEAKAQEIAKAKEEAKAQEIAKAKEEAKA--QE 295

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  514 PAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPApttpKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKE 593
Cdd:NF040676   296 IAKAKEEEKAQEIAKAKEEAKAREIAKAKEEEKA----REIAKAKEEAKAREIAKAKEEAKAREIAKAKEEERAKEASKN 371


                   ....*...
gi 2002298153  594 PAPTTPKE 601
Cdd:NF040676   372 NIQSAKRE 379
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 522-605 3.78e-03

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 41.53  E-value: 3.78e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  522 PAPTTPKEPAPTTPKEPAPTTPkePAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKepapTTPKEPAPTTP-K 600
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATPPP--PAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPPPPPPPG----PAGAAPGAALPvR 92


                   ....*
gi 2002298153  601 EPAPT 605
Cdd:NF041121    93 VPAPP 97
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 498-573 4.56e-03

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 41.14  E-value: 4.56e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2002298153  498 PESTTPKEPAPTTPKEPAPTTP---KEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPT 573
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATPPPpaaPPSPPGDPPEPPAPEPAPLPAPYPGSLAPPPPPPPGPAGAAPGAALPVRVPAPP 97
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
 470-710 4.61e-03

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 468201 [Multi-domain]  Cd Length: 684  Bit Score: 41.15  E-value: 4.61e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  470 TPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAP-TTPKEPAPTTPKE-----PAPTTPKEPAPTTPKEPAP-TT 542
Cdd:NF033838   228 TDREKAEEEAKRRADAKLKEAVEKNVATSEQDKPKRRAKrGVLGEPATPDKKEndaksSDSSVGEETLPSPSLKPEKkVA 307

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  543 PKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPK------EPAPTTPKEPAPTTP-KEPAPTTPKEPAPTTP 615
Cdd:NF033838   308 EAEKKVEEAKKKAKDQKEEDRRNYPTNTYKTLELEIAESDVKvkeaelELVKEEAKEPRNEEKiKQAKAKVESKKAEATR 387

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  616 KEPAPTTPKEPALTTPKEPAPTPKEPE-PTTPKEPAPTT-PKEPAPTtPKEPA--PTTKKPELTIPKEP-VPTTPKEPAP 690
Cdd:NF033838   388 LEKIKTDRKKAEEEAKRKAAEEDKVKEkPAEQPQPAPAPqPEKPAPK-PEKPAeqPKAEKPADQQAEEDyARRSEEEYNR 466

                          250       260
                   ....*....|....*....|
gi 2002298153  691 TTPKEPaPTTTKKPELSTPK 710
Cdd:NF033838   467 LTQQQP-PKTEKPAQPSTPK 485
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 395-476 5.85e-03

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 40.76  E-value: 5.85e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  395 PEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPkePAPTTKKPEPTTPKEPAPTTPKEPAPttPKEP 474
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATPPPPAAPPSPPGDPPEPPAPEPAPLPA--PYPGSLAPPPPPPPGPAGAAPGAALP--VRVP 94


                   ..
gi 2002298153  475 AP 476
Cdd:NF041121    95 AP 96
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 299-432 6.16e-03

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 40.52  E-value: 6.16e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  299 TTSAKETRSAENTSAKDVEPTSTTPKNSAPTTTKKPVTTTKEPVPTTTKGPEPTSKEPAPTTPKEPELTIPKE-PAPTTK 377
Cdd:NF040712   200 ATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQPEDEPVGPGAAPAAEPDEaTRDAGE 279

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2002298153  378 KPAPTTPKEPAPTTPKEPEPTTPkeSAPTTPKEPAPTTPKEPAPTTPKEPA--PTTP 432
Cdd:NF040712   280 PPAPGAAETPEAAEPPAPAPAAP--AAPAAPEAEEPARPEPPPAPKPKRRRrrASVP 334
 
Name Accession Description Interval E-value
HX cd00094
Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. ...
 1013-1274 4.45e-39

Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.


Pssm-ID: 238046 [Multi-domain]  Cd Length: 194  Bit Score: 143.99  E-value: 4.45e-39
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153 1013 TNICNGKPVDGLTTLRnGTLVAFRGHYFWMLNPFRPPSPPRRITEVW-GIPSPIDTVFTRCNcEGKTFFFKDSQYWRFTN 1091
Cdd:cd00094      1 PDACDPLSFDAVTTLR-GELYFFKGRYFWRLSPGKPPGSPFLISSFWpSLPSPVDAAFERPD-TGKIYFFKGDKYWVYTG 78

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153 1092 DVMDAGYPKLIVK-GFGGLTGKIVAALSIAkykdRPESVYFFKrGGNIQQYTYKQEPVRKCTGRQPAinysvygqaaqvr 1170
Cdd:cd00094     79 KNLEPGYPKPISDlGFPPTVKQIDAALRWP----DNGKTYFFK-GDKYWRYDEKTQKMDPGYPKLIE------------- 140

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153 1171 rrrferavgpfqthtfrihysvpikasyqdkgflhnevkvsTLWRGFPNVVTSAitlpnIRKPDGYdYYAFSKDQYYNID 1250
Cdd:cd00094    141 -----------------------------------------TDFPGVPDKVDAA-----FRWLDGY-YYFFKGDQYWRFD 173

                          250       260
                   ....*....|....*....|....
gi 2002298153 1251 VPTRTARAITTRSGqtlSRVWYNC 1274
Cdd:cd00094    174 PRSKEVRVGYPLKI---SSDWLGC 194
PHA03247 PHA03247
large tegument protein UL36; Provisional
 315-724 1.27e-36

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 151.63  E-value: 1.27e-36
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  315 DVEPTSTTPKNSAPTTTKKPVTTTKEPVPTTTKGPEPTSKEPAPTTPKEPELTIPKEPAPTTKKPAPTTPKEPAPTTPKE 394
Cdd:PHA03247  2590 DAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARR 2669

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  395 PEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPT-TPKEPA-PTTPK 472
Cdd:PHA03247  2670 LGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPaAPAPPAvPAGPA 2749

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  473 EPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKE-PAPTTPKEPAPTTPKEPAPTtp 551
Cdd:PHA03247  2750 TPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADpPAAVLAPAAALPPAASPAGP-- 2827

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  552 kEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEP----APTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPA 627
Cdd:PHA03247  2828 -LPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDvrrrPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPE 2906

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  628 lTTPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPELTIPKEPVPtTPKEPAPTTPKEPAP---TTTKKP 704
Cdd:PHA03247  2907 -RPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVP-QPWLGALVPGRVAVPrfrVPQPAP 2984

                          410       420
                   ....*....|....*....|
gi 2002298153  705 ELSTPKEPTSTNPKEPEPTL 724
Cdd:PHA03247  2985 SREAPASSTPPLTGHSLSRV 3004
PHA03247 PHA03247
large tegument protein UL36; Provisional
 341-779 1.57e-34

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 145.08  E-value: 1.57e-34
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  341 PVPTTTKGPEPTSKEPAPTTPKEPEltiPKEPAPTTKKPAPTTPKEPA-PTTPKEPepttpkesaPTTPKEPAPTTPKEP 419
Cdd:PHA03247  2552 PPPLPPAAPPAAPDRSVPPPRPAPR---PSEPAVTSRARRPDAPPQSArPRAPVDD---------RGDPRGPAPPSPLPP 2619

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  420 APTTPKEPAPTtpKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPE 499
Cdd:PHA03247  2620 DTHAPDPPPPS--PSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTS 2697

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  500 STTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKePAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPA 579
Cdd:PHA03247  2698 LADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPP-AVPAGPATPGGPARPARPPTTAGPPAPAPPAAPA 2776

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  580 STTPKEpapTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTtPKEPALTTPKEPAPTPKEPEPTTPKEP---------- 649
Cdd:PHA03247  2777 AGPPRR---LTRPAVASLSESRESLPSPWDPADPPAAVLAPA-AALPPAASPAGPLPPPTSAQPTAPPPPpgppppslpl 2852

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  650 -------------APTTPKEPAPTTPKEP-APTTKKPELTIPKEPVPTTPKEPAPTTPKEPAPTTTKKPELSTPKEPTST 715
Cdd:PHA03247  2853 ggsvapggdvrrrPPSRSPAAKPAAPARPpVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPP 2932

                          410       420       430       440       450       460
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2002298153  716 NPKEPEPTLPKEPELTLPEEPEPSNPETSDELIAEL-AEAPTPKALENNPKePTVPTETPEVSKP 779
Cdd:PHA03247  2933 PPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVpGRVAVPRFRVPQPA-PSREAPASSTPPL 2996
PHA03247 PHA03247
large tegument protein UL36; Provisional
 357-893 5.82e-33

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 139.69  E-value: 5.82e-33
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  357 APTTPKEPELTIPKEPAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEP------------APTTPKEPAPTTP 424
Cdd:PHA03247  2477 APVYRRPAEARFPFAAGAAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPrmltwirgleelASDDAGDPPPPLP 2556

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  425 KEPAPTTPKEPAPTT-----PKEPAPTTKKPEPTTPKEPA-PTTPKEPaPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEP 498
Cdd:PHA03247  2557 PAAPPAAPDRSVPPPrpaprPSEPAVTSRARRPDAPPQSArPRAPVDD-RGDPRGPAPPSPLPPDTHAPDPPPPSPSPAA 2635

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  499 ESTTPKEPAPTTPKEPA---------------------------PTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPT-- 549
Cdd:PHA03247  2636 NEPDPHPPPTVPPPERPrddpapgrvsrprrarrlgraaqasspPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHal 2715

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  550 ---TPKEPAPTTPKEPAPTTPKEPVP----TTPKEPASTTPKEPAPTTPKEPAPTTPKEPAP-----TTPKEPAPTTPKE 617
Cdd:PHA03247  2716 vsaTPLPPGPAAARQASPALPAAPAPpavpAGPATPGGPARPARPPTTAGPPAPAPPAAPAAgpprrLTRPAVASLSESR 2795

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  618 PAPTTPKEPALTTPKEPAPTPKEPEPTTPK--EPAPTTPKEPAPTTPKEPAPTTKKPELTI-PKEPV----PTTPKEPAP 690
Cdd:PHA03247  2796 ESLPSPWDPADPPAAVLAPAAALPPAASPAgpLPPPTSAQPTAPPPPPGPPPPSLPLGGSVaPGGDVrrrpPSRSPAAKP 2875

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  691 TTPKEPAPTTTKKPELSTPKEPTSTNPKEPEPtlPKEPELTLPEEPEPSNPETSDEliaelAEAPTPKALENNPKEPTVP 770
Cdd:PHA03247  2876 AAPARPPVRRLARPAVSRSTESFALPPDQPER--PPQPQAPPPPQPQPQPPPPPQP-----QPPPPPPPRPQPPLAPTTD 2948

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  771 TETPEVSKPEMTTAKEKTTEKDTTQTTTTVTPKTTTETTIIPEETTEPRASTTTRITSTAQDTTSPQMTTLKATTLAAKV 850
Cdd:PHA03247  2949 PAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSSWASSLALHEETDPPPVSLKQTL 3028

                          570       580       590       600
                   ....*....|....*....|....*....|....*....|...
gi 2002298153  851 TAPTEEIQSKPEETTLTTPalEGSDASKTTLKPQKPTKAPKKP 893
Cdd:PHA03247  3029 WPPDDTEDSDADSLFDSDS--ERSDLEALDPLPPEPHDPFAHE 3069
PHA03247 PHA03247
large tegument protein UL36; Provisional
 311-786 9.54e-31

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 132.75  E-value: 9.54e-31
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  311 TSAKDVEPTSTTPKNSAPTTTKKPVTTTKEPVPTTTKGPEPTSKEPAPTTPKEPELTIPKEPAPTTKKPaPTTPKEPA-- 388
Cdd:PHA03247  2611 PAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSP-PQRPRRRAar 2689

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  389 ------------PTTPKEPEPTtPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEpAPTTPKEPAPTTKKPEPTTPk 456
Cdd:PHA03247  2690 ptvgsltsladpPPPPPTPEPA-PHALVSATPLPPGPAAARQASPALPAAPAPPAVPA-GPATPGGPARPARPPTTAGP- 2766

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  457 ePAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKePAPTTPKEPAPTTPkEPAPTTPKEPAPTTPK 536
Cdd:PHA03247  2767 -PAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLA-PAAALPPAASPAGP-LPPPTSAQPTAPPPPP 2843

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  537 EPAPTTPKEPAPTTPKEP----APTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTtPKEPAPTTPKEPap 612
Cdd:PHA03247  2844 GPPPPSLPLGGSVAPGGDvrrrPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERP-PQPQAPPPPQPQ-- 2920

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  613 ttpkepapttPKEPALTTPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPELTIPKEPVPttpkEPAPTT 692
Cdd:PHA03247  2921 ----------PQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVP----QPAPSR 2986

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  693 PKePAPTTTKKPELSTPKEPT--STNPKEPEPTLPKEPELTLPEEPEPSNPETSDELIAELAEAPTPKALENNPKEPTVP 770
Cdd:PHA03247  2987 EA-PASSTPPLTGHSLSRVSSwaSSLALHEETDPPPVSLKQTLWPPDDTEDSDADSLFDSDSERSDLEALDPLPPEPHDP 3065

                          490
                   ....*....|....*.
gi 2002298153  771 TETPEVSKPEMTTAKE 786
Cdd:PHA03247  3066 FAHEPDPATPEAGARE 3081
PHA03247 PHA03247
large tegument protein UL36; Provisional
 408-840 1.78e-22

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 105.41  E-value: 1.78e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  408 PKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKP---------EPTTPK---------EPAPTTPKEPAPT 469
Cdd:PHA03247  2475 PGAPVYRRPAEARFPFAAGAAPDPGGGGPPDPDAPPAPSRLAPailpdepvgEPVHPRmltwirgleELASDDAGDPPPP 2554

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  470 TPKEPAPNTPKEPAPTTPKEPAPTTPK----------EPESTTPKEPA--PTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 537
Cdd:PHA03247  2555 LPPAAPPAAPDRSVPPPRPAPRPSEPAvtsrarrpdaPPQSARPRAPVddRGDPRGPAPPSPLPPDTHAPDPPPPSPSPA 2634

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  538 PAPTTPKEPAPTTPKE---------------------------------------------------PAPTTPKEPAPTT 566
Cdd:PHA03247  2635 ANEPDPHPPPTVPPPErprddpapgrvsrprrarrlgraaqassppqrprrraarptvgsltsladpPPPPPTPEPAPHA 2714

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  567 PKEPVPTTPKEPASTTPKEPAPTTPKEPA-PTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPkePAPTPKEPEPTT 645
Cdd:PHA03247  2715 LVSATPLPPGPAAARQASPALPAAPAPPAvPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPP--RRLTRPAVASLS 2792

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  646 PKEPAPTTPKEPAPTTPKEPAPTTKKPELTIPK--EPVPTTPKEPAPTTPKEPAPTTTKKPELSTPKEPTS----TNPKE 719
Cdd:PHA03247  2793 ESRESLPSPWDPADPPAAVLAPAAALPPAASPAgpLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRrrppSRSPA 2872

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  720 PEPTLPKEPELTLPEEPEPSNPETSDELIAELAEAPTPKALENNPKEPTVPTETPEVSKPEMTTAKEKTTEKDTTQTTTT 799
Cdd:PHA03247  2873 AKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGA 2952

                          490       500       510       520
                   ....*....|....*....|....*....|....*....|.
gi 2002298153  800 VTPKTTTETTIIPEETTEPRASTTTRITSTAQDTTSPQMTT 840
Cdd:PHA03247  2953 GEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASST 2993
PHA03247 PHA03247
large tegument protein UL36; Provisional
 119-725 2.42e-20

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 98.47  E-value: 2.42e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  119 PPPPGASRTIksttkrspkspkkktkkvveseeiteehsvsenqesssssssssSTIRKIKSSKNSANRELQKNPKVKDN 198
Cdd:PHA03247  2559 APPAAPDRSV--------------------------------------------PPPRPAPRPSEPAVTSRARRPDAPPQ 2594

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  199 KKNTPKKkpnpeppvvdeagsGLDNGEPKLTPPPDPptphnkvtASPKTTAAKPVTPKPSLAPNSETSKEASSTSNKETT 278
Cdd:PHA03247  2595 SARPRAP--------------VDDRGDPRGPAPPSP--------LPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERP 2652

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  279 VETKETTETNKQSSASKKEKTTSAKetrsaentsakdvEPTSTTPKNSAPTTTKKPVTTTKEPVPTTTKGPEPTSKEPAP 358
Cdd:PHA03247  2653 RDDPAPGRVSRPRRARRLGRAAQAS-------------SPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSAT 2719

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  359 TTPKEPELTIPKEPAPTTkkpAPTTPkePAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPT 438
Cdd:PHA03247  2720 PLPPGPAAARQASPALPA---APAPP--AVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSES 2794

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  439 TPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPkEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPkepaPTT 518
Cdd:PHA03247  2795 RESLPSPWDPADPPAAVLAPAAALPPAASPAGP-LPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRP----PSR 2869

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  519 PKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPttPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTT 598
Cdd:PHA03247  2870 SPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPER--PPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTT 2947

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  599 PKEPAPttpkEPAPTTPkepaptTPKEPALTTPKEPAPTPKEPEPTTPKE-PAPTTpkePAPTTPKEPAPTTKKPELTIP 677
Cdd:PHA03247  2948 DPAGAG----EPSGAVP------QPWLGALVPGRVAVPRFRVPQPAPSREaPASST---PPLTGHSLSRVSSWASSLALH 3014

                          570       580       590       600       610
                   ....*....|....*....|....*....|....*....|....*....|.
gi 2002298153  678 KEPVP---TTPKEPAPTTPKEPAPTTTKKPELSTPKEPTSTNPKEPEPTLP 725
Cdd:PHA03247  3015 EETDPppvSLKQTLWPPDDTEDSDADSLFDSDSERSDLEALDPLPPEPHDP 3065
PHA03247 PHA03247
large tegument protein UL36; Provisional
 388-981 8.22e-19

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 93.46  E-value: 8.22e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  388 APTTPKEPEPTTPkeSAPTTPKEPAPTTPKEP-APTTPKEPAPTT-PKEPapttPKEPAPTTKKPEPTTPKEPAPTTPKE 465
Cdd:PHA03247  2477 APVYRRPAEARFP--FAAGAAPDPGGGGPPDPdAPPAPSRLAPAIlPDEP----VGEPVHPRMLTWIRGLEELASDDAGD 2550

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  466 PAPTTPKEPAPNTPKEPAPTTPKEPAPTTPkepeSTTPKEPAPTTPKEPA-PTTPKEPaPTTPKEPAPTTPKEPAPTTPK 544
Cdd:PHA03247  2551 PPPPLPPAAPPAAPDRSVPPPRPAPRPSEP----AVTSRARRPDAPPQSArPRAPVDD-RGDPRGPAPPSPLPPDTHAPD 2625

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  545 EPAPTtpKEPAPTTPKEPAPT-TPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPkepaPTTPKEPAPTTPKEPAPTTP 623
Cdd:PHA03247  2626 PPPPS--PSPAANEPDPHPPPtVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSP----PQRPRRRAARPTVGSLTSLA 2699

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  624 KEPAltTPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAPttkkpeltipkEPVPTTPKEPAPTTPKEPAPTTTKK 703
Cdd:PHA03247  2700 DPPP--PPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAP-----------PAVPAGPATPGGPARPARPPTTAGP 2766

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  704 PELSTPKEPTSTnpkePEPTLPKEPeltlpeepepsnpetsdelIAELAEAPTPKALENNPKEPTVPTETPevskpemtt 783
Cdd:PHA03247  2767 PAPAPPAAPAAG----PPRRLTRPA-------------------VASLSESRESLPSPWDPADPPAAVLAP--------- 2814

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  784 akekttekdttqttttvtpktttettiipeetteprastttritsTAQDTTSPQMTTLKATTLAAKVTAPteeiqSKPEE 863
Cdd:PHA03247  2815 ---------------------------------------------AAALPPAASPAGPLPPPTSAQPTAP-----PPPPG 2844

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  864 TTLTTPALEGSDASKTTLKPQKPTKAPKKPASTKKPTKAPKKPTSTKKPKTPKGRKPKTTPSPLKTSTMSEQNTTPLEVM 943
Cdd:PHA03247  2845 PPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPP 2924

                          570       580       590
                   ....*....|....*....|....*....|....*...
gi 2002298153  944 LPTTTVPKQTPNSETAEVNPAHEDADGGEGEKPLIPRP 981
Cdd:PHA03247  2925 PPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQP 2962
PHA03247 PHA03247
large tegument protein UL36; Provisional
 244-662 8.79e-19

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 93.46  E-value: 8.79e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  244 SPKTTAAKPVTPKPSLAPNSETSKEAsstsnkettvetkettetnkqssaskkekTTSAKETRSAENTSAKDVEPTsttp 323
Cdd:PHA03247  2709 EPAPHALVSATPLPPGPAAARQASPA-----------------------------LPAAPAPPAVPAGPATPGGPA---- 2755

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  324 knsaptttkkpvtttKEPVPTTTKGPeptskePAPTTPKEPeltiPKEPAPTTKKPAPTTPKEPAPTTPKEPEPTTPkeS 403
Cdd:PHA03247  2756 ---------------RPARPPTTAGP------PAPAPPAAP----AAGPPRRLTRPAVASLSESRESLPSPWDPADP--P 2808

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  404 APTTPKEPAPTTPKEPAPTtpkEPAPTTPKEPAPTTPKEPAPTTKKPE----PTTP-KEPAPTTPKEPAPTTPKEPAPNT 478
Cdd:PHA03247  2809 AAVLAPAAALPPAASPAGP---LPPPTSAQPTAPPPPPGPPPPSLPLGgsvaPGGDvRRRPPSRSPAAKPAAPARPPVRR 2885

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  479 PKEPAPTTPKEPAPTTPKEPESttPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTpkEPAPTTPKEPAPTT 558
Cdd:PHA03247  2886 LARPAVSRSTESFALPPDQPER--PPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTT--DPAGAGEPSGAVPQ 2961

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  559 PKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPK--------------EPAPTTPKEP--APTTPKEPAPTT 622
Cdd:PHA03247  2962 PWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRvsswasslalheetDPPPVSLKQTlwPPDDTEDSDADS 3041

                          410       420       430       440
                   ....*....|....*....|....*....|....*....|..
gi 2002298153  623 PKEPALTTPKEPAPTPKEPEPTTP--KEPAPTTPKEPAPTTP 662
Cdd:PHA03247  3042 LFDSDSERSDLEALDPLPPEPHDPfaHEPDPATPEAGARESP 3083
SO smart00201
Somatomedin B -like domains; Somatomedin-B is a peptide, proteolytically excised from ...
 26-68 1.68e-18

Somatomedin B -like domains; Somatomedin-B is a peptide, proteolytically excised from vitronectin, that is a growth hormone-dependent serum factor with protease-inhibiting activity.


Pssm-ID: 197571  Cd Length: 43  Bit Score: 80.11  E-value: 1.68e-18
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 2002298153    26 DISSCAGRCGEGYSRDATCNCDYNCQHYMECCPDFKRVCTTEL 68
Cdd:smart00201    1 AIGSCKGRCGESFNEGNACRCDALCLSYGDCCTDYESVCKKEV 43
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 372-697 6.32e-18

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 89.66  E-value: 6.32e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  372 PAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTP-KEPAPTTPKEPAPTTPKEPAPTTKkP 450
Cdd:PRK07764   396 AAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNApAGGAPSPPPAAAPSAQPAPAPAAA-P 474

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  451 EPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAP---------------------------------------------- 484
Cdd:PRK07764   475 EPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDaatlrerwpeilaavpkrsrktwaillpeatvlgvrgdtlvlgfst 554

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  485 -----------------------------------TTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAP-TTPK 528
Cdd:PRK07764   555 gglarrfaspgnaevlvtalaeelggdwqveavvgPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPaGAAA 634

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  529 EPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKE-PASTTPKEPAPTTPKEPAPTTPKEPAPTTP 607
Cdd:PRK07764   635 APAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPaPAPAAPAAPAGAAPAQPAPAPAATPPAGQA 714

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  608 KEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPE--PTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEltipKEPVPTTP 685
Cdd:PRK07764   715 DDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPdpAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEE----EEMAEDDA 790

                          410
                   ....*....|..
gi 2002298153  686 KEPAPTTPKEPA 697
Cdd:PRK07764   791 PSMDDEDRRDAE 802
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 348-666 7.56e-18

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 89.66  E-value: 7.56e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  348 GPEPTSKEPAPTTPKEPELTIPKEPAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEP 427
Cdd:PRK07764   409 APAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAP 488

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  428 APTTPKEPAPTTPKEPAPTT-------------------------KKPEPT----------------------------- 453
Cdd:PRK07764   489 APAAAPAAPAAPAAPAGADDaatlrerwpeilaavpkrsrktwaiLLPEATvlgvrgdtlvlgfstgglarrfaspgnae 568

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  454 ----------------------TPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAP-TTPKEPESTTPKEPAPTT 510
Cdd:PRK07764   569 vlvtalaeelggdwqveavvgpAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPaGAAAAPAEASAAPAPGVA 648

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  511 PKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE-PAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPT 589
Cdd:PRK07764   649 APEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPaPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGA 728

                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2002298153  590 TPKEPAPTTPKEPAPTTPKEPAP-TTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEPAPttpkEPAPTTPKEPA 666
Cdd:PRK07764   729 SAPSPAADDPVPLPPEPDDPPDPaGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAP----SMDDEDRRDAE 802
Somatomedin_B pfam01033
Somatomedin B domain;
69-106 1.11e-17

Somatomedin B domain;


Pssm-ID: 460034  Cd Length: 40  Bit Score: 77.34  E-value: 1.11e-17
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 2002298153   69 SCKGRCFESFARGRECDCDSQCKQYGKCCADYNSFCEE 106
Cdd:pfam01033    2 SCKGRCGESFDRGRLCQCDDDCVKYGDCCPDYESLCLG 39
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 373-698 1.85e-17

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 88.12  E-value: 1.85e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  373 APTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEP 452
Cdd:PRK07764   389 GGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAP 468

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  453 TTPKEPAPTTPKEPAPTTPKEPAPnTPKEPAPTTPKEPAPTT-------------------------------------- 494
Cdd:PRK07764   469 APAAAPEPTAAPAPAPPAAPAPAA-APAAPAAPAAPAGADDAatlrerwpeilaavpkrsrktwaillpeatvlgvrgdt 547

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  495 ----------------PKEPES--------------------TTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEP 538
Cdd:PRK07764   548 lvlgfstgglarrfasPGNAEVlvtalaeelggdwqveavvgPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAP 627

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  539 AP-TTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKE-PAPTTPKEPAPTTPKEPAPTTPK 616
Cdd:PRK07764   628 APaGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPaPAPAAPAAPAGAAPAQPAPAPAA 707

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  617 EPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEPAPTTPK-EPAPTTPKEPAPttkkPELTIPKEPVPTTPKEPAPTTPKE 695
Cdd:PRK07764   708 TPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDdPPDPAGAPAQPP----PPPAPAPAAAPAAAPPPSPPSEEE 783


                   ...
gi 2002298153  696 PAP 698
Cdd:PRK07764   784 EMA 786
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 318-697 2.76e-17

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 87.92  E-value: 2.76e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  318 PTSTTPKNSAPTTTKKPVTTTKEPVPTTTKGPEPTSKEPAPTTPKEPELTIPKEPAPTTKKPAPTTPKEPAPTTPKEPEP 397
Cdd:PHA03307    49 ELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPP 128

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  398 TTPKESAPTTPKEPAPTTPkePAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTP----KEPAPTTPKE 473
Cdd:PHA03307   129 SPAPDLSEMLRPVGSPGPP--PAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEpppsTPPAAASPRP 206

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  474 PAPNTP-----KEPAPTTPKEPAPTTPKEPESTTPKE------------PAPTTPKEPAPTTPKEPAPTTPKEPAPTTPK 536
Cdd:PHA03307   207 PRRSSPisasaSSPAPAPGRSAADDAGASSSDSSSSEssgcgwgpenecPLPRPAPITLPTRIWEASGWNGPSSRPGPAS 286

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  537 EPAPTTPKEPAPTTPKEPAPttPKEPAPTTPKEPVPTTPKEPASTTPKEPAP---TTPKEPAPTTPKEPAPTTPKEPAPT 613
Cdd:PHA03307   287 SSSSPRERSPSPSPSSPGSG--PAPSSPRASSSSSSSRESSSSSTSSSSESSrgaAVSPGPSPSRSPSPSRPPPPADPSS 364

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  614 TPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPELTIPKEPVPTTPKEPAPTTP 693
Cdd:PHA03307   365 PRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYARYPLLTPSGEPWPGSP 444


                   ....
gi 2002298153  694 KEPA 697
Cdd:PHA03307   445 PPPP 448
Streccoc_I_II NF033804
antigen I/II family LPXTG-anchored adhesin; Members of the antigen I/II family are adhesins ...
 522-667 3.41e-17

antigen I/II family LPXTG-anchored adhesin; Members of the antigen I/II family are adhesins with a glucan-binding domain, two types of repetitive regions, an isopeptide bond-forming domain associated with shear resistance, and a C-terminal LPXTG motif for anchoring to the cell wall. They occur in oral Streptococci, and tend to be major cell surface adhesins. Members of this family include SspA and SspB from Streptococcus gordonii, antigen I/II from S. mutans, etc.


Pssm-ID: 468188 [Multi-domain]  Cd Length: 1552  Bit Score: 87.69  E-value: 3.41e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  522 PAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAP--TTPKEPVPTTPKEPASTT--PKEPAPTTP---KEP 594
Cdd:NF033804   825 PKITKEKPTPPVAPTAPQAPTYEVEKPLEPAPVAPTYENEPTPpvKTPDQPEPSKPEEPTYETekPLEPAPVAPtyeNEP 904

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2002298153  595 AP--TTPKEPAPTTPKEPAPTT--PKEPAPTTPKEPALTTPkePAPTPKEPEPTTPKEPApttpKEPAPTTPKEPAP 667
Cdd:NF033804   905 TPpvKTPDQPEPSKPEEPTYETekPLEPAPVAPSYENEPTP--PVKTPDQPEPSKPVEPT----YDPLPTPPVAPTP 975
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 355-667 3.86e-17

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 87.35  E-value: 3.86e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  355 EPAPTTPKEPELTIPKEPAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPttpKEPAPTTPKEPAPTTPKE 434
Cdd:PRK07764   391 AGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAP---AGGAPSPPPAAAPSAQPA 467

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  435 PAPTTPKEPAPTTKkPEPTTPKEPAPTTPKEPAPTTPKEPAPN------------------------------------- 477
Cdd:PRK07764   468 PAPAAAPEPTAAPA-PAPPAAPAPAAAPAAPAAPAAPAGADDAatlrerwpeilaavpkrsrktwaillpeatvlgvrgd 546

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  478 --------------------------------------------TPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKE 513
Cdd:PRK07764   547 tlvlgfstgglarrfaspgnaevlvtalaeelggdwqveavvgpAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAA 626

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  514 PAP-TTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE-PVPTTPKEPASTTPKEPAPTTP 591
Cdd:PRK07764   627 PAPaGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPaPAPAAPAAPAGAAPAQPAPAPA 706

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  592 KEPAPTTPKEPAPTTPKEPAPTTPKEPAPTT----PKEPALTTPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAP 667
Cdd:PRK07764   707 ATPPAGQADDPAAQPPQAAQGASAPSPAADDpvplPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMA 786
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 298-721 4.21e-17

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 87.05  E-value: 4.21e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  298 KTTSAKETRSAENTSAKDVEPTSTTPKNSAPTTTKKPVTTTKEPVPTTTKGPEPTSKEPAPTTPKEPELTIPKEP--APT 375
Cdd:PTZ00449   478 KIQFTQEIKKLIKKSKKKLAPIEEEDSDKHDEPPEGPEASGLPPKAPGDKEGEEGEHEDSKESDEPKEGGKPGETkeGEV 557

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  376 TKKPAPTTPKEPAPTTPKEPEPTTPKES-APTTPKEP----APTTPKEP-APTTPKEPA----PTTPKEP-APTTPKEPA 444
Cdd:PTZ00449   558 GKKPGPAKEHKPSKIPTLSKKPEFPKDPkHPKDPEEPkkpkRPRSAQRPtRPKSPKLPElldiPKSPKRPeSPKSPKRPP 637

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  445 PTTKkpePTTPKEP-APTTPKEPAPttpkepaPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPA 523
Cdd:PTZ00449   638 PPQR---PSSPERPeGPKIIKSPKP-------PKSPKPPFDPKFKEKFYDDYLDAAAKSKETKTTVVLDESFESILKETL 707

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  524 PTTPKEPApTTPKEPAPTTPKEPAP--TTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPT----TPKEPAPT 597
Cdd:PTZ00449   708 PETPGTPF-TTPRPLPPKLPRDEEFpfEPIGDPDAEQPDDIEFFTPPEEERTFFHETPADTPLPDILAeefkEEDIHAET 786

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  598 TPKEPAPTTPKEPAPTTPKEPA--PTTPKEPALTTPKEPAPTPKEPEP-TTPKEPA--PTTPKEPAP-----TTPKEPAP 667
Cdd:PTZ00449   787 GEPDEAMKRPDSPSEHEDKPPGdhPSLPKKRHRLDGLALSTTDLESDAgRIAKDASgkIVKLKRSKSfddltTVEEAEEM 866

                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|....
gi 2002298153  668 TTKKPELTIPKEPVPTTPKEPAPTTPKEPAPTTTKKPELSTPKEPTSTNPKEPE 721
Cdd:PTZ00449   867 GAEARKIVVDDDGTEADDEDTHPPEEKHKSEVRRRRPPKKPSKPKKPSKPKKPK 920
SO smart00201
Somatomedin B -like domains; Somatomedin-B is a peptide, proteolytically excised from ...
 67-108 4.43e-17

Somatomedin B -like domains; Somatomedin-B is a peptide, proteolytically excised from vitronectin, that is a growth hormone-dependent serum factor with protease-inhibiting activity.


Pssm-ID: 197571  Cd Length: 43  Bit Score: 75.87  E-value: 4.43e-17
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 2002298153    67 ELSCKGRCFESFARGRECDCDSQCKQYGKCCADYNSFCEEVH 108
Cdd:smart00201    2 IGSCKGRCGESFNEGNACRCDALCLSYGDCCTDYESVCKKEV 43
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 355-698 6.22e-17

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 86.76  E-value: 6.22e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  355 EPAPTTPKEPELTIPKEPAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPT-TPKEPAPTTPKEPAPTT-PKEPAPTTP 432
Cdd:PHA03307    52 AVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREgSPTPPGPSSPDPPPPTPpPASPPPSPA 131

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  433 KEPAPTTPKEPAPtTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPK 512
Cdd:PHA03307   132 PDLSEMLRPVGSP-GPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRS 210

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  513 EPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE----PAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAP 588
Cdd:PHA03307   211 SPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPenecPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSS 290

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  589 TTPKEPAPTTPKEPAPttPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPkePAPT 668
Cdd:PHA03307   291 PRERSPSPSPSSPGSG--PAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADP--SSPR 366

                          330       340       350
                   ....*....|....*....|....*....|
gi 2002298153  669 TKKPELTIPKEPVPTTPKEPAPTTPKEPAP 698
Cdd:PHA03307   367 KRPRPSRAPSSPAASAGRPTRRRARAAVAG 396
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
418-687 4.49e-16

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 83.75  E-value: 4.49e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  418 EPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKE 497
Cdd:PRK07003   359 EPAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADR 438

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  498 PESTTPKePAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPttPKEPAPTTPKEPAPTTPKEPVPTTPKe 577
Cdd:PRK07003   439 GDDAADG-DAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDA--AFEPAPRAAAPSAATPAAVPDARAPA- 514

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  578 pASTTPKEPAPttPKEPAP-TTPKEPAPTTP---------------------------KEPAPTTPKEPAPTTPKePALT 629
Cdd:PRK07003   515 -AASREDAPAA--AAPPAPeARPPTPAAAAPaaraggaaaaldvlrnagmrvssdrgaRAAAAAKPAAAPAAAPK-PAAP 590

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 2002298153  630 TPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPeltiPKEPVPTTPKE 687
Cdd:PRK07003   591 RVAVQVPTPRARAATGDAPPNGAARAEQAAESRGAPPPWEDIP----PDDYVPLSADE 644
Somatomedin_B pfam01033
Somatomedin B domain;
29-67 4.66e-16

Somatomedin B domain;


Pssm-ID: 460034  Cd Length: 40  Bit Score: 72.72  E-value: 4.66e-16
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 2002298153   29 SCAGRCGEGYSRDATCNCDYNCQHYMECCPDFKRVCTTE 67
Cdd:pfam01033    2 SCKGRCGESFDRGRLCQCDDDCVKYGDCCPDYESLCLGE 40
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 310-658 8.49e-16

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 82.73  E-value: 8.49e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  310 NTSAKDVEPTSTTPKNSAPTTTKKPVTTTKEPVPTTTKGPEPTSK---EPAPTTPKEPELTIPKEPAPTTKKPAPTTPKE 386
Cdd:PRK07764   386 GVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQpapAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQ 465

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  387 PAPTTPKEPEPTTPKESAPTTPKEPAPTtPKEPAPTTPKEPAPTTP-----------------------KEPAPT----- 438
Cdd:PRK07764   466 PAPAPAAAPEPTAAPAPAPPAAPAPAAA-PAAPAAPAAPAGADDAAtlrerwpeilaavpkrsrktwaiLLPEATvlgvr 544

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  439 ---------TPK--------------------------------EPAPTTKKPEPTTPKEPAPTTPKEPAPTTPkePAPN 477
Cdd:PRK07764   545 gdtlvlgfsTGGlarrfaspgnaevlvtalaeelggdwqveavvGPAPGAAGGEGPPAPASSGPPEEAARPAAP--AAPA 622

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  478 TPKEPAP-TTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE-PAPTTPKEPAPTTPKEPA 555
Cdd:PRK07764   623 APAAPAPaGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPaPAPAAPAAPAGAAPAQPA 702

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  556 PTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAP-TTPKEPAPTTPKEPAPTTPKEPALTTPKEP 634
Cdd:PRK07764   703 PAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPaGAPAQPPPPPAPAPAAAPAAAPPPSPPSEE 782

                          410       420
                   ....*....|....*....|....
gi 2002298153  635 APTPKEPEPttpkEPAPTTPKEPA 658
Cdd:PRK07764   783 EEMAEDDAP----SMDDEDRRDAE 802
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
372-583 1.11e-15

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 82.23  E-value: 1.11e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  372 PAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTtPKEPAPTtPKEPAPTTPKEPAPTTKKPE 451
Cdd:PRK12323   374 PATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPA-RRSPAPE-ALAAARQASARGPGGAPAPA 451

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  452 PTTPKEPAPTTPKEPAPttpkePAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPA 531
Cdd:PRK12323   452 PAPAAAPAAAARPAAAG-----PRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESI 526

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|..
gi 2002298153  532 PttpkEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTP 583
Cdd:PRK12323   527 P----DPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLP 574
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 388-717 1.17e-15

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 82.34  E-value: 1.17e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  388 APTTPKEPEPTTPKESAPTtPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPA 467
Cdd:PRK07764   389 GGAGAPAAAAPSAAAAAPA-AAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPA 467

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  468 PTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAP--------------------------------------- 508
Cdd:PRK07764   468 PAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDaatlrerwpeilaavpkrsrktwaillpeatvlgvrgdt 547

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  509 ------------------------------------------TTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEP 546
Cdd:PRK07764   548 lvlgfstgglarrfaspgnaevlvtalaeelggdwqveavvgPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAP 627

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  547 AP-TTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPkEPAPTTPKEPAPTTPKEPAPTTPke 625
Cdd:PRK07764   628 APaGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAP-PPAPAPAAPAAPAGAAPAQPAPA-- 704

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  626 PALTTPKEPAPTPkEPEPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPELTIPKEPVPTTPKEPAPTTPKEPAPTTTKKPE 705
Cdd:PRK07764   705 PAATPPAGQADDP-AAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEE 783

                          410
                   ....*....|..
gi 2002298153  706 LSTPKEPTSTNP 717
Cdd:PRK07764   784 EMAEDDAPSMDD 795
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
363-650 4.89e-15

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 80.28  E-value: 4.89e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  363 EPELTIPKEPAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 442
Cdd:PRK07003   359 EPAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADR 438

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  443 PAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTT--PK 520
Cdd:PRK07003   439 GDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAaaSR 518

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  521 EPAPTTPKEPAP-TTPKEPAPTTP------------------------KEPAPTTPKEPAPTTPKEPAPTTPKEPVPT-T 574
Cdd:PRK07003   519 EDAPAAAAPPAPeARPPTPAAAAPaaraggaaaaldvlrnagmrvssdRGARAAAAAKPAAAPAAAPKPAAPRVAVQVpT 598

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  575 PKEPASTTPKEPAPTTPKEPAPTTPKEPAP---TTPKEPAPTTPKE----------PAPTTPKEPALTTPKePAPTPKEP 641
Cdd:PRK07003   599 PRARAATGDAPPNGAARAEQAAESRGAPPPwedIPPDDYVPLSADEgfggpddgfvPVFDSGPDDVRVAPK-PADAPAPP 677


                   ....*....
gi 2002298153  642 EPTTPKEPA 650
Cdd:PRK07003   678 VDTRPLPPA 686
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
443-674 7.62e-15

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 79.53  E-value: 7.62e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  443 PAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTtpkepesttPKEPAPTTPKEPAPTTPKEP 522
Cdd:PRK12323   374 PATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPA---------RRSPAPEALAAARQASARGP 444

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  523 APTtpKEPAPTTPKEPAPTTPKEPAPttpkePAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPtTPKEP 602
Cdd:PRK12323   445 GGA--PAPAPAPAAAPAAAARPAAAG-----PRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAP-AQPDA 516

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2002298153  603 APtTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPkEPEPTTPKEPAPTTPKEPAPTTPkePAPTTKKPEL 674
Cdd:PRK12323   517 AP-AGWVAESIPDPATADPDDAFETLAPAPAAAPAP-RAAAATEPVVAPRPPRASASGLP--DMFDGDWPAL 584
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 436-786 1.49e-14

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 78.87  E-value: 1.49e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  436 APTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPkepesttPKEPAPTTPKEPA 515
Cdd:PRK07764   389 GGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNA-------PAGGAPSPPPAAA 461

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  516 PTTPKEPAPTTPkePAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPT------------------------------ 565
Cdd:PRK07764   462 PSAQPAPAPAAA--PEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAatlrerwpeilaavpkrsrktwaillpeat 539

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  566 -----------------------TPKEP--------------------VPTTPKEPASTTPKEPAPTTPKEPAPttpkEP 602
Cdd:PRK07764   540 vlgvrgdtlvlgfstgglarrfaSPGNAevlvtalaeelggdwqveavVGPAPGAAGGEGPPAPASSGPPEEAA----RP 615

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  603 APTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPELTIPKEPVP 682
Cdd:PRK07764   616 AAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAG 695

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  683 TTPKEPAPTTPKEPAPTTTKKPELSTPKEPTSTNPK----EPEPTLPKEPELTLPEEPEPSNPETSDELIAELAEAPTPK 758
Cdd:PRK07764   696 AAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPspaaDDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPP 775

                          410       420
                   ....*....|....*....|....*...
gi 2002298153  759 ALENNPKEPTVPTETPEVSKPEMTTAKE 786
Cdd:PRK07764   776 PSPPSEEEEMAEDDAPSMDDEDRRDAEE 803
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
389-599 2.24e-14

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 77.99  E-value: 2.24e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  389 PTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTtPKEPAPTTKKPEPTTPKEPAPTTPkEPAP 468
Cdd:PRK12323   375 ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPA-RRSPAPEALAAARQASARGPGGAP-APAP 452

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  469 TTPKEPAPNTPkePAPTTPKEPAPTTPKEPestTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAP 548
Cdd:PRK12323   453 APAAAPAAAAR--PAAAGPRPVAAAAAAAP---ARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIP 527

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|.
gi 2002298153  549 ttpkEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTP 599
Cdd:PRK12323   528 ----DPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLP 574
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 406-633 3.02e-14

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 77.72  E-value: 3.02e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  406 TTPKEPAPTTPKEPAPttpKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPT 485
Cdd:PRK07764   590 PAPGAAGGEGPPAPAS---SGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGG 666

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  486 TPkEPAPTTPKEPESTTPKePAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPT 565
Cdd:PRK07764   667 DG-WPAKAGGAAPAAPPPA-PAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPE 744

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2002298153  566 TPKEPVPTTPKEPAsttpkEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKE 633
Cdd:PRK07764   745 PDDPPDPAGAPAQP-----PPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDRRDAEEVAME 807
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 420-725 3.02e-14

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 77.72  E-value: 3.02e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  420 APTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTP-KEPAPTTPKEPAPTTPKEP 498
Cdd:PRK07764   389 GGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNApAGGAPSPPPAAAPSAQPAP 468

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  499 ESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAP---------------------------------------------- 532
Cdd:PRK07764   469 APAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAApagaddaatlrerwpeilaavpkrsrktwaillpeatvlgvrgdtl 548

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  533 -----------------------------------------TTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPV 571
Cdd:PRK07764   549 vlgfstgglarrfaspgnaevlvtalaeelggdwqveavvgPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPA 628

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  572 P-TTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPA--PTPKEPEPTTPKE 648
Cdd:PRK07764   629 PaGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPagAAPAQPAPAPAAT 708

                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2002298153  649 PAPTTPKEPAPTTPKEPAPTTKKPELTIPKEPVPTTPKEP--APTTPKEPAPTTTKKPELSTPKEPTSTNPKEPEPTLP 725
Cdd:PRK07764   709 PPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPpdPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAE 787
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
427-631 3.81e-14

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 77.22  E-value: 3.81e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  427 PAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPnTPKEPAPTTPKEPAPTTPKEPESTtpKEP 506
Cdd:PRK12323   374 PATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAP-ARRSPAPEALAAARQASARGPGGA--PAP 450

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  507 APTTPKEPAPTTPKEPAPTTPK-EPAPTTPKEPAPTTPKEPAPTTPKePAPTTPKEPAPTTPKEPVPTTPKEPASTTPkE 585
Cdd:PRK12323   451 APAPAAAPAAAARPAAAGPRPVaAAAAAAPARAAPAAAPAPADDDPP-PWEELPPEFASPAPAQPDAAPAGWVAESIP-D 528

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*.
gi 2002298153  586 PAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTP 631
Cdd:PRK12323   529 PATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLP 574
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
356-559 5.18e-14

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 76.84  E-value: 5.18e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  356 PAPTTPKEPELTIPKEPAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPK-----EPAPTTPKEPAPTTPKEPAPT 430
Cdd:PRK12323   374 PATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSpapeaLAAARQASARGPGGAPAPAPA 453

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  431 TPKEPAPTTPKEPAPttkkPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPtt 510
Cdd:PRK12323   454 PAAAPAAAARPAAAG----PRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIP-- 527

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*....
gi 2002298153  511 pkEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTP 559
Cdd:PRK12323   528 --DPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLP 574
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
465-722 5.95e-14

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 76.81  E-value: 5.95e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  465 EPAPTTPKEPAPNTPKEPAPTTPKePAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPkEPAPTTPKEPAPTTPK 544
Cdd:PRK07003   359 EPAVTGGGAPGGGVPARVAGAVPA-PGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAA-TRAEAPPAAPAPPATA 436

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  545 EPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTT-- 622
Cdd:PRK07003   437 DRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAaa 516

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  623 PKEPALTTPKEPAPTPKEPEPTTPKEPAPTTPKEPA-----------PTTPKEPAPTTKKPELTIPKEPVPTTPKEPAPT 691
Cdd:PRK07003   517 SREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAAldvlrnagmrvSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQV 596

                          250       260       270
                   ....*....|....*....|....*....|..
gi 2002298153  692 -TPKEPAPTTTKKPELSTPKEPTSTNPKEPEP 722
Cdd:PRK07003   597 pTPRARAATGDAPPNGAARAEQAAESRGAPPP 628
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 412-725 1.01e-13

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 76.36  E-value: 1.01e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  412 APTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPApTTKKPEPTTPKEPAPTtPKEPAPTTPKEPAPNTPKEPAPTTPKEPA 491
Cdd:PHA03307    24 PPATPGDAADDLLSGSQGQLVSDSAELAAVTVV-AGAAACDRFEPPTGPP-PGPGTEAPANESRSTPTWSLSTLAPASPA 101

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  492 PTTPKEPESTTPKEPAPTT--PKEPAPTTPKEPAPTTPKEPAPTTPkePAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 569
Cdd:PHA03307   102 REGSPTPPGPSSPDPPPPTppPASPPPSPAPDLSEMLRPVGSPGPP--PAASPPAAGASPAAVASDAASSRQAALPLSSP 179

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  570 PVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEP 649
Cdd:PHA03307   180 EETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPR 259

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  650 A-----PTTPKEPAPTTPKEPAPTTKKPELTIPK---EPVPTTPKEPAPTTPKEPAPTTTKKPELSTPKEPTSTNPKEPE 721
Cdd:PHA03307   260 PapitlPTRIWEASGWNGPSSRPGPASSSSSPRErspSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGA 339


                   ....
gi 2002298153  722 PTLP 725
Cdd:PHA03307   340 AVSP 343
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
402-623 1.13e-13

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 75.68  E-value: 1.13e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  402 ESAPTTPKE-PAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTpkEPAPTTPKEPAPNTPK 480
Cdd:PRK12323   371 GAGPATAAAaPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEA--LAAARQASARGPGGAP 448

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  481 EPAPTTPKEPAPTTPkepesttpkePAPTTPKEPAPttpkePAPTTPKEPAPTTPKEPAPTTPKePAPTTPKEPAPTTPK 560
Cdd:PRK12323   449 APAPAPAAAPAAAAR----------PAAAGPRPVAA-----AAAAAPARAAPAAAPAPADDDPP-PWEELPPEFASPAPA 512

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2002298153  561 EPAPTTPKEPVPTTPkEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTP 623
Cdd:PRK12323   513 QPDAAPAGWVAESIP-DPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLP 574
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
516-725 1.28e-13

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 75.68  E-value: 1.28e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  516 PTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKepvPTTPKEPASTTPKEPAPTTPKEPA 595
Cdd:PRK12323   375 ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRS---PAPEALAAARQASARGPGGAPAPA 451

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  596 PTTPKEPAPTTPkePAPTTPKEPAPTTPKEPAlttPKEPAPTPK-EPEPTTPKEPAPTTPKEPAPtTPKEPAPTTKKPEL 674
Cdd:PRK12323   452 PAPAAAPAAAAR--PAAAGPRPVAAAAAAAPA---RAAPAAAPApADDDPPPWEELPPEFASPAP-AQPDAAPAGWVAES 525

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|.
gi 2002298153  675 TipKEPVPTTPKEPAPTTPKEPAPTTTKKPELSTPKEPTSTNPKEPEPTLP 725
Cdd:PRK12323   526 I--PDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLP 574
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
465-689 1.92e-13

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 74.91  E-value: 1.92e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  465 EPAPTTPKepAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPK 544
Cdd:PRK12323   371 GAGPATAA--AAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAP 448

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  545 EPAPTTPKEPAPTTPkePAPTTPKEPVPTTPKEPAsttPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTtPKEPAPTTPK 624
Cdd:PRK12323   449 APAPAPAAAPAAAAR--PAAAGPRPVAAAAAAAPA---RAAPAAAPAPADDDPPPWEELPPEFASPAPA-QPDAAPAGWV 522

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2002298153  625 EPALTTPKEPAPTPKEPEPTTPKEPAPTtpkePAPTTPKEPAPTTKKPELTIPKEPVPTTPKEPA 689
Cdd:PRK12323   523 AESIPDPATADPDDAFETLAPAPAAAPA----PRAAAATEPVVAPRPPRASASGLPDMFDGDWPA 583
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 369-585 2.16e-13

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 75.02  E-value: 2.16e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  369 PKEPAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTK 448
Cdd:PRK07764   597 GEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGA 676

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  449 KPEPTTPKePAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPK 528
Cdd:PRK07764   677 APAAPPPA-PAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAP 755

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2002298153  529 EPAPttpkePAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKE 585
Cdd:PRK07764   756 AQPP-----PPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDRRDAEEVAME 807
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
492-706 2.73e-13

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 74.53  E-value: 2.73e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  492 PTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTtPKEPAPTTPKEPAPTTPKEPAPTtpKEPV 571
Cdd:PRK12323   375 ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPA-RRSPAPEALAAARQASARGPGGA--PAPA 451

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  572 PTTPKEPASTTPkePAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAP--TTPKEPALTTPKEPAPTPKEPEPTTPKEP 649
Cdd:PRK12323   452 PAPAAAPAAAAR--PAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPweELPPEFASPAPAQPDAAPAGWVAESIPDP 529

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2002298153  650 APTTPKEPAPtTPKEPAPTTKKPELTIPKEPVPtTPKEPAPTTPKEPAPTTTKKPEL 706
Cdd:PRK12323   530 ATADPDDAFE-TLAPAPAAAPAPRAAAATEPVV-APRPPRASASGLPDMFDGDWPAL 584
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 248-701 7.28e-13

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 73.58  E-value: 7.28e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  248 TAAKPVTPKPSLAPNSETSKEASSTSNKETTVETKETTETNKQSSASKKEKTTSAKETRSAEnTSAKDVEPTSTTPKNSA 327
Cdd:PRK10263   362 PVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAP-APEQPAQQPYYAPAPEQ 440

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  328 PTTTKKPVTTTKEPVPTTTKGPEPTSKEPAPTTPKEPELTIPKEPAPTTKKPAP----TTPKEPAPTTPKEPEPTTPKES 403
Cdd:PRK10263   441 PVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPvveeTKPARPPLYYFEEVEEKRARER 520

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  404 APTTP-KEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPA--PTTPKEPAPNTPK 480
Cdd:PRK10263   521 EQLAAwYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVfsLANSGGPRPQVKE 600

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  481 EPAPTTPKepapttPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPT--- 557
Cdd:PRK10263   601 GIGPQLPR------PKRIRVPTRRELASYGIKLPSQRAAEEKAREAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTqqq 674

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  558 ----TPKEPAPTTPKEPVPTTPKEPAST---------TPKEPAPTTP-----------KEPAPTTPKEP--APTTPKEPA 611
Cdd:PRK10263   675 rygeQYQHDVPVNAEDADAAAEAELARQfaqtqqqrySGEQPAGANPfslddfefspmKALLDDGPHEPlfTPIVEPVQQ 754

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  612 PTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPELTIPKEPVPTTPKEPAPT 691
Cdd:PRK10263   755 PQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQ 834

                          490
                   ....*....|
gi 2002298153  692 TPKEPAPTTT 701
Cdd:PRK10263   835 QPVAPQPQDT 844
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
434-646 8.43e-13

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 72.99  E-value: 8.43e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  434 EPAPTTPKepAPTTKKPEPTTPKEPAPTTPKEPAPTTPkePAPNTPKEPAPTTPKEPAPTTPKePESTTPKEPAPTTPKE 513
Cdd:PRK12323   371 GAGPATAA--AAPVAQPAPAAAAPAAAAPAPAAPPAAP--AAAPAAAAAARAVAAAPARRSPA-PEALAAARQASARGPG 445

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  514 PAPttpkEPAPTTPKEPAPTTPkePAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVP--TTPKEPASTTPKEPAPTTP 591
Cdd:PRK12323   446 GAP----APAPAPAAAPAAAAR--PAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPweELPPEFASPAPAQPDAAPA 519

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 2002298153  592 KEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTP 646
Cdd:PRK12323   520 GWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLP 574
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
481-713 9.59e-13

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 72.60  E-value: 9.59e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  481 EPAPTTPKepAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPK 560
Cdd:PRK12323   371 GAGPATAA--AAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAP 448

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  561 EPAPTTPKEPVPTTPKEPASttpkePAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTtPKEPAPTPKE 640
Cdd:PRK12323   449 APAPAPAAAPAAAARPAAAG-----PRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPA-QPDAAPAGWV 522

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2002298153  641 PEPTTPKEPAPTTPKEPAPTTPKEPAPTtkkpeltipkePVPTTPKEPAPtTPKEPAPTTTKKPELSTPKEPT 713
Cdd:PRK12323   523 AESIPDPATADPDDAFETLAPAPAAAPA-----------PRAAAATEPVV-APRPPRASASGLPDMFDGDWPA 583
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 352-716 1.18e-12

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 72.11  E-value: 1.18e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  352 TSKEPAPTTPKEPELTIPKEPAPTTKkPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTT 431
Cdd:NF033839   155 SSTKPETPQPENPEHQKPTTPAPDTK-PSPQPEGKKPSVPDINQEKEKAKLAVATYMSKILDDIQKHHLQKEKHRQIVAL 233

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  432 PKEPAPTTPK-----EPAPTTKKPEPTTPKEPAPTTP------KEPAPTTPKEPApnTPKEPAPTTPKEPAPTTPKEPES 500
Cdd:NF033839   234 IKELDELKKQalseiDNVNTKVEIENTVHKIFADMDAvvtkfkKGLTQDTPKEPG--NKKPSAPKPGMQPSPQPEKKEVK 311

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  501 TTPKEPAP-TTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPK-EPAPTTPKEPAPTTPKEPVPTTPKEP 578
Cdd:NF033839   312 PEPETPKPeVKPQLEKPKPEVKPQPEKPKPEVKPQLETPKPEVKPQPEKPKPEvKPQPEKPKPEVKPQPETPKPEVKPQP 391

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  579 ASTTPK-EPAPTTPKEPAPTTPKEPAPTTPKEPAPTTP-KEPAPTTPKEPALTTPKEPAPTPKePEPTTPK---EPAPTT 653
Cdd:NF033839   392 EKPKPEvKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPeVKPQPEKPKPEVKPQPEKPKPEVK-PQPETPKpevKPQPEK 470

                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2002298153  654 PKEPAPTTPKEPAPTTKKPELTIPKEPVPTT-PKEPAPTTPKEPAPTTTKKPELSTPKEPTSTN 716
Cdd:NF033839   471 PKPEVKPQPEKPKPDNSKPQADDKKPSTPNNlSKDKQPSNQASTNEKATNKPKKSLPSTGSISN 534
Not5 COG5665
CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription];
239-654 1.42e-12

CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription];


Pssm-ID: 444384 [Multi-domain]  Cd Length: 874  Bit Score: 72.39  E-value: 1.42e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  239 NKVTASPKTTAAKPVTPkpSLAPNSETSKEASSTSNKETTVETKETTETNkqSSASKKEKTTSAKETRSAENTSAKDVEP 318
Cdd:COG5665    167 NPVAVVVTTMIAVPSAP--AAPPNAVDYSVLVPIAAQDPAASVSTPQAFN--ASATSGRSQHIVQAAKRVGVEWWGDPSL 242

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  319 TSTTPKNSAPTTTKKPVTTTKEPVPTTTKGPEPTSKEPAPTTPKEPELTIPkePAPTTKKPAPTTPKEPAPTTPKEP--- 395
Cdd:COG5665    243 LATPPATPATEEKSSQQPKSQPTSPSGGTTPPSTNQLTTSNTPTSTAKAQP--QPPTKKQPAKEPPSDTASGNPSAPsvl 320

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  396 -EPTTPKESAPTTPKepAPTTPKEPAPTTPKEpAPTTPKEpaPTTPKEPAPTtkkpePTTPKEPAPTTPKEPAPTTPKEP 474
Cdd:COG5665    321 iNSDSPTSEDPATAS--VPTTEETTAFTTPSS-VPSTPAE--KDTPATDLAT-----PVSPTPPETSVDKKVSPDSATSS 390

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  475 apnTPKEPAPTTPKEPapttpkEPESTTPKEPAPTTPKEPAPTTpKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEP 554
Cdd:COG5665    391 ---TKSEKEGGTASSP------MPPNIAIGAKDDVDATDPSQEA-KEYTKNAPMTPEADSAPESSVRTEASPSAGSDLEP 460

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  555 APTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPkePAPTTPKEPAPTTPKEPAPTTP-----KEPAPTTPKEPALT 629
Cdd:COG5665    461 ENTTLRDPAPNAIPPPEDPSTIGRLSSGDKLANETGP--PVIRRDSTPSSTADQSIVGVLAfgldqRTQAEISVEAASRS 538

                          410       420
                   ....*....|....*....|....*
gi 2002298153  630 TPKEPAPTPKEPEPTTPKEPAPTTP 654
Cdd:COG5665    539 NPLLNSQVKSFPLGKRSEGAKGKTQ 563
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
 451-567 3.13e-12

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteriztic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 65.07  E-value: 3.13e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  451 EPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEP 530
Cdd:pfam02389    7 QPCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVP 86

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 2002298153  531 APTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTP 567
Cdd:pfam02389   87 EPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
PHA03378 PHA03378
EBNA-3B; Provisional
 341-730 3.97e-12

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 70.87  E-value: 3.97e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  341 PVPTTTKGPEPTSKEPAPTTP-KEPELTIPKEPAPTTKKPAPTTPKEPAPTTP----------KEPEPTTPKESAPTTPK 409
Cdd:PHA03378   448 QAPTVVLHRPPTQPLEGPTGPlSVQAPLEPWQPLPHPQVTPVILHQPPAQGVQahgsmldlleKDDEDMEQRVMATLLPP 527

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  410 EPAPTTPKEPAPTTPKEPAPTTPKEPAPTTP------KEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPA 483
Cdd:PHA03378   528 SPPQPRAGRRAPCVYTEDLDIESDEPASTEPvhdqllPAPGLGPLQIQPLTSPTTSQLASSAPSYAQTPWPVPHPSQTPE 607

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  484 PTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPT-----------TPKEPAPTTPK 552
Cdd:PHA03378   608 PPTTQSHIPETSAPRQWPMPLRPIPMRPLRMQPITFNVLVFPTPHQPPQVEITPYKPTwtqighipyqpSPTGANTMLPI 687

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  553 EPAPTTPKEPapttPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAlttpk 632
Cdd:PHA03378   688 QWAPGTMQPP----PRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPA----- 758

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  633 ePAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEP--APTtkkpeltipkePVPTTPKEPAPTTPKEPAPTTTKKPELSTPK 710
Cdd:PHA03378   759 -AAPGRARPPAAAPGAPTPQPPPQAPPAPQQRPrgAPT-----------PQPPPQAGPTSMQLMPRAAPGQQGPTKQILR 826

                          410       420
                   ....*....|....*....|
gi 2002298153  711 EPTSTNPKEPEPTLPKEPEL 730
Cdd:PHA03378   827 QLLTGGVKRGRPSLKKPAAL 846
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 293-727 4.84e-12

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 70.88  E-value: 4.84e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  293 ASKKEKTTSAKETRSAENTSAKDVEPTSTTPKNSAPTTTKKPVTTTKEPVPTTTKG-----PEPTSKEPAP--TTPKEPE 365
Cdd:PRK10263   314 APITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGepviaPAPEGYPQQSqyAQPAVQY 393

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  366 LTIPKEPAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKE---PAPTTPKEPAPTTPKEPAPTTPKE 442
Cdd:PRK10263   394 NEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAwqaEEQQSTFAPQSTYQTEQTYQQPAA 473

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  443 PAPTTKKPEPTtpkEPAPTTPKEPA-----PTTPK----------------------EPAPNTPKEPAPTTPKEPAPTTP 495
Cdd:PRK10263   474 QEPLYQQPQPV---EQQPVVEPEPVveetkPARPPlyyfeeveekrarereqlaawyQPIPEPVKEPEPIKSSLKAPSVA 550

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  496 KEPESTTPKEPAP-------TTPKEPAPTTPKEPA--PTTPKEPAPTT-----PKEPAPT-----TPKEPAPTTPKEPAP 556
Cdd:PRK10263   551 AVPPVEAAAAVSPlasgvkkATLATGAAATVAAPVfsLANSGGPRPQVkegigPQLPRPKrirvpTRRELASYGIKLPSQ 630

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  557 TTPKEPAPTTPKEPVPT-----------------------TPKEPASTTPKEPAPTTPKEPAPTTPKEPAPT-------- 605
Cdd:PRK10263   631 RAAEEKAREAQRNQYDSgdqynddeidamqqdelarqfaqTQQQRYGEQYQHDVPVNAEDADAAAEAELARQfaqtqqqr 710

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  606 -TPKEPAPTTP-----------KEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPE 673
Cdd:PRK10263   711 ySGEQPAGANPfslddfefspmKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQ 790

                          490       500       510       520       530
                   ....*....|....*....|....*....|....*....|....*....|....
gi 2002298153  674 LTIPKEPVPTTPKEPAPTTPKEPAPtTTKKPELSTPKEPTSTNPKEPEPTLPKE 727
Cdd:PRK10263   791 YQQPQQPVAPQPQYQQPQQPVAPQP-QYQQPQQPVAPQPQYQQPQQPVAPQPQD 843
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 495-781 5.07e-12

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 70.49  E-value: 5.07e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  495 PKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKE-PAPTTPKEPAPTtpKEPAPTTPKEPAPTTPKEPAPTTPKEPV-P 572
Cdd:PTZ00449   511 PEGPEASGLPPKAPGDKEGEEGEHEDSKESDEPKEgGKPGETKEGEVG--KKPGPAKEHKPSKIPTLSKKPEFPKDPKhP 588

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  573 TTPKEPASTTpkepAPTTPKEP-APTTPKEPA----PTTPKEP-APTTPKEPAPttPKEPALTTPKEPAPTPKEPE-PTT 645
Cdd:PTZ00449   589 KDPEEPKKPK----RPRSAQRPtRPKSPKLPElldiPKSPKRPeSPKSPKRPPP--PQRPSSPERPEGPKIIKSPKpPKS 662

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  646 PKEPAPTTPKEPAPTTPKEPAPTTKKPELT---------IPKEPVPTTPKEPAPTT-PKEPAPTTTKKPELSTPKEPTST 715
Cdd:PTZ00449   663 PKPPFDPKFKEKFYDDYLDAAAKSKETKTTvvldesfesILKETLPETPGTPFTTPrPLPPKLPRDEEFPFEPIGDPDAE 742

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2002298153  716 NPKEPEPTLPKEPELTL--PEEPEPSNPETSDELIAE---LAEAPTPKALENNPKEPTVPTETPEVSKPEM 781
Cdd:PTZ00449   743 QPDDIEFFTPPEEERTFfhETPADTPLPDILAEEFKEediHAETGEPDEAMKRPDSPSEHEDKPPGDHPSL 813
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
 450-559 9.24e-12

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteriztic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 63.92  E-value: 9.24e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  450 PEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 529
Cdd:pfam02389   14 QEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVPEPCHPKA 93

                           90       100       110
                   ....*....|....*....|....*....|
gi 2002298153  530 PAPTTPKEPAPTTPKEPAPTTPKEPAPTTP 559
Cdd:pfam02389   94 PEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 506-659 9.48e-12

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 69.51  E-value: 9.48e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  506 PAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKE 585
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK 440

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2002298153  586 PAPTTPKEPAPtTPKEPAPTTPKEPAPTTPkePAPTTPKEPALTTPKEPAPTPKEPEpTTPKEPAPTTPKEPAP 659
Cdd:PRK07994   441 SEPAAASRARP-VNSALERLASVRPAPSAL--EKAPAKKEAYRWKATNPVEVKKEPV-ATPKALKKALEHEKTP 510
rne PRK10811
ribonuclease E; Reviewed
 484-666 1.15e-11

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 69.68  E-value: 1.15e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  484 PTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTpkEPAPTTPKEPAPTTPKEPAPTTPKEpAPTTPKEPA 563
Cdd:PRK10811   846 PVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVV--EAVAEVVEEPVVVAEPQPEEVVVVE-TTHPEVIAA 922

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  564 PTTPKEPVPTTPKEP-ASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPE 642
Cdd:PRK10811   923 PVTEQPQVITESDVAvAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVA 1002

                          170       180       190
                   ....*....|....*....|....*....|..
gi 2002298153  643 PTTPKEP--------APTTpKEPAPTTPKEPA 666
Cdd:PRK10811  1003 PAQVPEAtvehnhatAPMT-RAPAPEYVPEAP 1033
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
 468-578 1.27e-11

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteriztic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 63.53  E-value: 1.27e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  468 PTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPA 547
Cdd:pfam02389    8 PCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVPE 87

                           90       100       110
                   ....*....|....*....|....*....|.
gi 2002298153  548 PTTPKEPAPTTPKEPAPTTPKEPVPTTPKEP 578
Cdd:pfam02389   88 PCHPKAPEPCHPKVPEPCYPKAPEPCQPKVP 118
HX smart00120
Hemopexin-like repeats; Hemopexin is a heme-binding protein that transports heme to the liver. ...
 1065-1109 1.34e-11

Hemopexin-like repeats; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs).


Pssm-ID: 214524 [Multi-domain]  Cd Length: 45  Bit Score: 60.33  E-value: 1.34e-11
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*
gi 2002298153  1065 IDTVFTRCNceGKTFFFKDSQYWRFTNDVMDAGYPKLIVKGFGGL 1109
Cdd:smart00120    1 IDAAFELRD--GKTYFFKGDKYWRFDPKRVDPGYPKLISSFFPGL 43
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 397-717 1.38e-11

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 69.41  E-value: 1.38e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  397 PTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPT--TPKEPAPTTPKEP 474
Cdd:pfam03154  172 PVLQAQSGAASPPSPPPPGTTQAATAGPTPSAPSVPPQGSPATSQPPNQTQSTAAPHTLIQQTPTlhPQRLPSPHPPLQP 251

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  475 APNTPKEP-APTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 553
Cdd:pfam03154  252 MTQPPPPSqVSPQPLPQPSLHGQMPPMPHSLQTGPSHMQHPVPPQPFPLTPQSSQSQVPPGPSPAAPGQSQQRIHTPPSQ 331

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  554 PAPTTPKEPAPTT-PKEPVPTTPKEPASTTP--KEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTT 630
Cdd:pfam03154  332 SQLQSQQPPREQPlPPAPLSMPHIKPPPTTPipQLPNPQSHKHPPHLSGPSPFQMNSNLPPPPALKPLSSLSTHHPPSAH 411

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  631 PKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPELTIPKEPVPTTPKEPAPTTPKEPA--PTTTKKPELST 708
Cdd:pfam03154  412 PPPLQLMPQSQQLPPPPAQPPVLTQSQSLPPPAASHPPTSGLHQVPSQSPFPQHPFVPGGPPPITPPsgPPTSTSSAMPG 491


                   ....*....
gi 2002298153  709 PKEPTSTNP 717
Cdd:pfam03154  492 IQPPSSASV 500
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 479-649 1.56e-11

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 68.74  E-value: 1.56e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  479 PKEPAPTTPKEPAPTTPKePESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTT 558
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPA-ASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAK 439

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  559 PKEPAPTTPKEPVPTTPKEPASTTPKEPAPttpkePAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTP 638
Cdd:PRK07994   440 KSEPAAASRARPVNSALERLASVRPAPSAL-----EKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAA 514

                          170
                   ....*....|.
gi 2002298153  639 KEPEPTTPKEP 649
Cdd:PRK07994   515 KLAAEAIERDP 525
rne PRK10811
ribonuclease E; Reviewed
 403-603 1.67e-11

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 68.91  E-value: 1.67e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  403 SAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTkKPEPTTPKEPAPTTPKEPAPTTPKE-PAPNTPKE 481
Cdd:PRK10811   844 RYPVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVV-EAVAEVVEEPVVVAEPQPEEVVVVEtTHPEVIAA 922

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  482 PAPTTPKEPAPTTPKEPESTTPkEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPaptTPKE 561
Cdd:PRK10811   923 PVTEQPQVITESDVAVAQEVAE-HAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETV---TAVE 998

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|..
gi 2002298153  562 PAPTTPKEPVPTTPKEPASttpkepAPTTpKEPAPTTPKEPA 603
Cdd:PRK10811   999 PEVAPAQVPEATVEHNHAT------APMT-RAPAPEYVPEAP 1033
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
 508-623 1.72e-11

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteriztic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 63.15  E-value: 1.72e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  508 PTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPA 587
Cdd:pfam02389    8 PCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVPE 87

                           90       100       110
                   ....*....|....*....|....*....|....*.
gi 2002298153  588 PTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTP 623
Cdd:pfam02389   88 PCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
 492-607 2.12e-11

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteriztic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 62.76  E-value: 2.12e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  492 PTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPV 571
Cdd:pfam02389    8 PCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVPE 87

                           90       100       110
                   ....*....|....*....|....*....|....*.
gi 2002298153  572 PTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTP 607
Cdd:pfam02389   88 PCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 514-675 2.16e-11

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 68.35  E-value: 2.16e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  514 PAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPkePAPTTPKEPVPTTPKEPASTTPKEPAPTTPKE 593
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASA--PQQAPAVPLPETTSQLLAARQQLQRAQGATKA 438

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  594 PapttPKEPAPTTPKEPAPTTPKEPAPTTPKEPALttpkEPAPTPKEPEPTTPKEPAPTTPKEPA-PTTPKEPAPTTKKP 672
Cdd:PRK07994   439 K----KSEPAAASRARPVNSALERLASVRPAPSAL----EKAPAKKEAYRWKATNPVEVKKEPVAtPKALKKALEHEKTP 510


                   ...
gi 2002298153  673 ELT 675
Cdd:PRK07994   511 ELA 513
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 313-658 2.17e-11

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 68.66  E-value: 2.17e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  313 AKDVEPTSTTPKNSAPTTTKKPVTTTKEPVPTTTKGPEPTSK--EPAPTTP--------------KEPELTIPKEPAPTT 376
Cdd:PHA03307    81 ANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPpaSPPPSPApdlsemlrpvgspgPPPAASPPAAGASPA 160

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  377 KKPAPT-TPKEPAPTTPKEPEPTTPKESAPTTP---KEPAPTTPKEPAPTTP-----KEPAPTTPKEPAPTTPKEPAPTT 447
Cdd:PHA03307   161 AVASDAaSSRQAALPLSSPEETARAPSSPPAEPppsTPPAAASPRPPRRSSPisasaSSPAPAPGRSAADDAGASSSDSS 240

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  448 KKPEPTTPKEPAPTTPKEPAPTTpkePAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPttPKEPAPTTP 527
Cdd:PHA03307   241 SSESSGCGWGPENECPLPRPAPI---TLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSG--PAPSSPRAS 315

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  528 KEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKE--PAPT 605
Cdd:PHA03307   316 SSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRarAAVA 395

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|...
gi 2002298153  606 TPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEPAPTTPKEPA 658
Cdd:PHA03307   396 GRARRRDATGRFPAGRPRPSPLDAGAASGAFYARYPLLTPSGEPWPGSPPPPP 448
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 471-718 2.20e-11

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 68.03  E-value: 2.20e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  471 PKEPAPNTPKEPAPTTPKEPAPTTPKEPEstTPKEPAPTTPKEPAPTTPKE--PAPTTPKEPAPTTPKEPAPTTPKEPAP 548
Cdd:PLN03209   330 PKESDAADGPKPVPTKPVTPEAPSPPIEE--EPPQPKAVVPRPLSPYTAYEdlKPPTSPIPTPPSSSPASSKSVDAVAKP 407

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  549 TTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPA-PTTPKEPAPTTPKEPA 627
Cdd:PLN03209   408 AEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSPYARYEDLKPPTSPSPTAPTGVSPSVSSTSSvPAVPDTAPATAATDAA 487

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  628 LttPKEPAPTPKEPEPTTPKEPAPTTPkEPAPTTPKEPAPTTKKPELTIPKEPvPTTPKEPAPTTPKEPAPTT--TKKPE 705
Cdd:PLN03209   488 A--PPPANMRPLSPYAVYDDLKPPTSP-SPAAPVGKVAPSSTNEVVKVGNSAP-PTALADEQHHAQPKPRPLSpyTMYED 563

                          250
                   ....*....|...
gi 2002298153  706 LSTPKEPTSTNPK 718
Cdd:PLN03209   564 LKPPTSPTPSPVL 576
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
 456-575 2.63e-11

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteriztic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 62.38  E-value: 2.63e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  456 KEPAPTTPKEPAPTTPKEPApnTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTP 535
Cdd:pfam02389    6 KQPCQPPPQEPCVPTTKEPC--HSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSP 83

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 2002298153  536 KEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTP 575
Cdd:pfam02389   84 KVPEPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 530-682 2.89e-11

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 67.97  E-value: 2.89e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  530 PAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPkePASTTPKEPAPTTPKEPAPTTP--KEPAPTTP 607
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASA--PQQAPAVPLPETTSQLLAARQQlqRAQGATKA 438

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2002298153  608 KEPAPTTPKEPAPTTPKEPALTtPKEPAPTPKEPEPtTPKEPAPTTPKEPAPtTPKEPAPTTKKPELTIPKEPVP 682
Cdd:PRK07994   439 KKSEPAAASRARPVNSALERLA-SVRPAPSALEKAP-AKKEAYRWKATNPVE-VKKEPVATPKALKKALEHEKTP 510
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 424-572 3.14e-11

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 67.58  E-value: 3.14e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  424 PKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTP 503
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK 440

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2002298153  504 KEPAPTTPKEPAPTTPK---EPAPTTPKEPAPTTPKEPAPTTPKEPAPTtpKEPAPTTPKEPAPTTPKEPVP 572
Cdd:PRK07994   441 SEPAAASRARPVNSALErlaSVRPAPSALEKAPAKKEAYRWKATNPVEV--KKEPVATPKALKKALEHEKTP 510
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
 433-551 3.25e-11

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteriztic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 62.38  E-value: 3.25e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  433 KEPAPTTPKEP-APTTKkpEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTP 511
Cdd:pfam02389    6 KQPCQPPPQEPcVPTTK--EPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSP 83

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 2002298153  512 KEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTP 551
Cdd:pfam02389   84 KVPEPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
 524-643 4.02e-11

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteriztic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 61.99  E-value: 4.02e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  524 PTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPA 603
Cdd:pfam02389    8 PCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVPE 87

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 2002298153  604 PTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEP 643
Cdd:pfam02389   88 PCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPSTVTP 127
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 546-703 4.74e-11

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 67.20  E-value: 4.74e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  546 PAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 625
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK 440

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2002298153  626 PALTTPKEPAPTPKEPEPTTPKEPAPTTPkEPAPTTPKEPAPTTKKPELTipKEPVPTTPKEPAPTTPKEPAPTTTKK 703
Cdd:PRK07994   441 SEPAAASRARPVNSALERLASVRPAPSAL-EKAPAKKEAYRWKATNPVEV--KKEPVATPKALKKALEHEKTPELAAK 515
rne PRK10811
ribonuclease E; Reviewed
 381-563 4.90e-11

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 67.37  E-value: 4.90e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  381 PTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTpkEPAPTTPKEPAPTTPKEPAPTTkKPEPTTPKEPAP 460
Cdd:PRK10811   846 PVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVV--EAVAEVVEEPVVVAEPQPEEVV-VVETTHPEVIAA 922

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  461 TTPKEPAPTTPKEP--APNTPKEPAPTTPKEPAPTTPKEPESTTPKEPA-PTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 537
Cdd:PRK10811   923 PVTEQPQVITESDVavAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAePEVVAQPAAPVVAEVAAEVETVTAVEPEVA 1002

                          170       180       190
                   ....*....|....*....|....*....|..
gi 2002298153  538 PAPTTPKE------PAPTTpKEPAPTTPKEPA 563
Cdd:PRK10811  1003 PAQVPEATvehnhaTAPMT-RAPAPEYVPEAP 1033
rne PRK10811
ribonuclease E; Reviewed
 389-571 5.47e-11

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 67.37  E-value: 5.47e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  389 PTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTpkEPAPTTPKEPAPTTkKPEPTTPKEPAPTTPKEPAP 468
Cdd:PRK10811   846 PVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVV--EAVAEVVEEPVVVA-EPQPEEVVVVETTHPEVIAA 922

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  469 TTPKEPAPNTPKEP--APTTPKEPAPTTPKEPESTTPKEPAPTTPKEPA-PTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 545
Cdd:PRK10811   923 PVTEQPQVITESDVavAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAePEVVAQPAAPVVAEVAAEVETVTAVEPEVA 1002

                          170       180       190
                   ....*....|....*....|....*....|..
gi 2002298153  546 PAPTTPKE------PAPTTpKEPAPTTPKEPV 571
Cdd:PRK10811  1003 PAQVPEATvehnhaTAPMT-RAPAPEYVPEAP 1033
rne PRK10811
ribonuclease E; Reviewed
 508-697 5.71e-11

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 67.37  E-value: 5.71e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  508 PTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTpkEPAPTTPKEPAPTTpkEPVPTTPKEPASTTPKEPA 587
Cdd:PRK10811   846 PVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVV--EAVAEVVEEPVVVA--EPQPEEVVVVETTHPEVIA 921

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  588 PTTPKEPAPTTPKEP--APTTPKEPAPTTPKEPAPTTPKEPALTTpkEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEP 665
Cdd:PRK10811   922 APVTEQPQVITESDVavAQEVAEHAEPVVEPQDETADIEEAAETA--EVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEP 999

                          170       180       190
                   ....*....|....*....|....*....|....
gi 2002298153  666 APTTKKPELTIPKEPVPTTP--KEPAPTTPKEPA 697
Cdd:PRK10811  1000 EVAPAQVPEATVEHNHATAPmtRAPAPEYVPEAP 1033
rne PRK10811
ribonuclease E; Reviewed
 502-672 6.76e-11

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 66.99  E-value: 6.76e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  502 TPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTpkEPAPTTPKEPAPTTPKEPAPTtpkEPVPTTPKEPAST 581
Cdd:PRK10811   848 VRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVV--EAVAEVVEEPVVVAEPQPEEV---VVVETTHPEVIAA 922

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  582 TPKEPAPTTPKEPAPT---TPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEPAPTTPKEPA 658
Cdd:PRK10811   923 PVTEQPQVITESDVAVaqeVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVA 1002

                          170       180
                   ....*....|....*....|..
gi 2002298153  659 PTTPKEP--------APTTKKP 672
Cdd:PRK10811  1003 PAQVPEAtvehnhatAPMTRAP 1024
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 578-731 6.91e-11

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 66.81  E-value: 6.91e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  578 PASTTPKEPAPTTPKEPAPTTPKEPAPTTPkEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTP--KEPAPTTPK 655
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQATAAPTAA-VAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQlqRAQGATKAK 439

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2002298153  656 EPAPTTPKEPAPTTKKPELTIPKEPVPTTPkePAPTTPKEPAPTTTKKPELStpKEPTSTNPKEPEPTL--PKEPELT 731
Cdd:PRK07994   440 KSEPAAASRARPVNSALERLASVRPAPSAL--EKAPAKKEAYRWKATNPVEV--KKEPVATPKALKKALehEKTPELA 513
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
342-527 7.18e-11

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 66.82  E-value: 7.18e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  342 VPTTTKGPEPTSKEPAPTTPKEPELTIPKEPAPTTKKPAPTTpkEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPA- 420
Cdd:PRK12323   391 APAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEA--LAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAg 468

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  421 PTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPkEPAPTTPKEPAPTTPKEPES 500
Cdd:PRK12323   469 PRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIP-DPATADPDDAFETLAPAPAA 547

                          170       180
                   ....*....|....*....|....*..
gi 2002298153  501 TTPKEPAPTTPKEPAPTTPKEPAPTTP 527
Cdd:PRK12323   548 APAPRAAAATEPVVAPRPPRASASGLP 574
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
495-657 7.68e-11

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 66.52  E-value: 7.68e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  495 PKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAP--TTPKEPAPTTPKEPAPTTPKEPAPTTPKE--- 569
Cdd:PRK14948   363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPakASPPIPVPAEPTEPSPTPPANAANAPPSLnle 442

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  570 ----------PVPTT------------------------------------------------------PKEPASTTPKE 585
Cdd:PRK14948   443 elwqqilaklELPSTrmllsqqaelvsldsnraviavspnwlgmvqsrkplleqafakvlgrsiklnleSQSGSASNTAK 522

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2002298153  586 PAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEPAPTTPKEP 657
Cdd:PRK14948   523 TPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTPSPTKDSSP 594
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
 425-542 7.90e-11

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteriztic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 61.22  E-value: 7.90e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  425 KEPAPTTPKEPAPTTPKEPApTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPK 504
Cdd:pfam02389    6 KQPCQPPPQEPCVPTTKEPC-HSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPK 84

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 2002298153  505 EPAPTTPKEPAPTTPKEPAPTTPKEPAPTTP--KEPAPTT 542
Cdd:pfam02389   85 VPEPCHPKAPEPCHPKVPEPCYPKAPEPCQPkvPEPCPST 124
rne PRK10811
ribonuclease E; Reviewed
 516-704 8.01e-11

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 66.99  E-value: 8.01e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  516 PTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTpkEPAPTTPKEPVPTTpkEPASTTPKEPAPTTPKEPA 595
Cdd:PRK10811   846 PVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVV--EAVAEVVEEPVVVA--EPQPEEVVVVETTHPEVIA 921

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  596 PTTPKEPAPTTPKEP--APTTPKEPAPTTPKEPALTTPKEPAPTPKEP--EPTTPKEPAPTTPKEPAPTTPKEPAPTTkK 671
Cdd:PRK10811   922 APVTEQPQVITESDVavAQEVAEHAEPVVEPQDETADIEEAAETAEVVvaEPEVVAQPAAPVVAEVAAEVETVTAVEP-E 1000

                          170       180       190
                   ....*....|....*....|....*....|...
gi 2002298153  672 PELTIPKEPVPTTPKEPAPTTpKEPAPTTTKKP 704
Cdd:PRK10811  1001 VAPAQVPEATVEHNHATAPMT-RAPAPEYVPEA 1032
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 507-633 8.34e-11

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 66.28  E-value: 8.34e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  507 APTTPKEPAPTTPKEPAPTTP-KEPAPTTPKEPAPTTPkePAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKE 585
Cdd:PRK14951   369 AAEAAAPAEKKTPARPEAAAPaAAPVAQAAAAPAPAAA--PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVA 446

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 2002298153  586 PAPTTPKEPAPTTPKEPAPTTPkEPAPTTPKEPAPTTPKEPALTTPKE 633
Cdd:PRK14951   447 LAPAPPAQAAPETVAIPVRVAP-EPAVASAAPAPAAAPAAARLTPTEE 493
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 432-588 8.34e-11

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 66.43  E-value: 8.34e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  432 PKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTP 511
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK 440

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2002298153  512 KEPAPTTPKEPAPTTPkepAPTTPKEPAPTTPkePAPTTPKEPAPTTPKEPAPTtpKEPVPTTPKEPASTTPKEPAP 588
Cdd:PRK07994   441 SEPAAASRARPVNSAL---ERLASVRPAPSAL--EKAPAKKEAYRWKATNPVEV--KKEPVATPKALKKALEHEKTP 510
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 291-673 8.36e-11

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 66.64  E-value: 8.36e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  291 SSASKKEKTTSAKETRSAENTSAKDVEPTSTTPK---------NSAPTttkkpvtttkepvptTTKGPEPTSKEPAPTTP 361
Cdd:PTZ00449   527 KEGEEGEHEDSKESDEPKEGGKPGETKEGEVGKKpgpakehkpSKIPT---------------LSKKPEFPKDPKHPKDP 591

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  362 KEPELtiPKEPAPTTKKPAPTTPKEPA----PTTPKEPE-PTTPKESAPTTpkepAPTTPKEP-APTTPKEP-APTTPKE 434
Cdd:PTZ00449   592 EEPKK--PKRPRSAQRPTRPKSPKLPElldiPKSPKRPEsPKSPKRPPPPQ----RPSSPERPeGPKIIKSPkPPKSPKP 665

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  435 PAPTTPKEPAPTTKKPEPTTPKEPAPTTP-KEPAPTTPKEPAPNTPKEPApTTPKEPAPTTPKEPES--TTPKEPAPTTP 511
Cdd:PTZ00449   666 PFDPKFKEKFYDDYLDAAAKSKETKTTVVlDESFESILKETLPETPGTPF-TTPRPLPPKLPRDEEFpfEPIGDPDAEQP 744

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  512 KEPAPTTPKEPAPTTPKEPAPTTPKEPAPT----TPKEPAPTTPKEPAPTTPKEPAPTTPKEP--VPTTPKE-------P 578
Cdd:PTZ00449   745 DDIEFFTPPEEERTFFHETPADTPLPDILAeefkEEDIHAETGEPDEAMKRPDSPSEHEDKPPgdHPSLPKKrhrldglA 824

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  579 ASTTPKEPAPTTPKEPAPTTP------KEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTT--PKEPA 650
Cdd:PTZ00449   825 LSTTDLESDAGRIAKDASGKIvklkrsKSFDDLTTVEEAEEMGAEARKIVVDDDGTEADDEDTHPPEEKHKSEvrRRRPP 904

                          410       420
                   ....*....|....*....|...
gi 2002298153  651 PTTPKEPAPTTPKEPapttKKPE 673
Cdd:PTZ00449   905 KKPSKPKKPSKPKKP----KKPD 923
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 498-587 8.47e-11

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 66.84  E-value: 8.47e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  498 PESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPvptTPKE 577
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAA---AAVE 114

                           90
                   ....*....|
gi 2002298153  578 PASTTPKEPA 587
Cdd:PRK12270   115 DEVTPLRGAA 124
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
315-519 8.51e-11

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 66.44  E-value: 8.51e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  315 DVEPTSTTPKNSAPTTTKKPVTTTKEPVPTTTKGPEPTSKEPAPTTPKEPELTIPKEPAPTTKKPAPTTPKEPAPTTPkE 394
Cdd:PRK12323   371 GAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAP-A 449

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  395 PEPTTPKESAPTTPkePAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEP 474
Cdd:PRK12323   450 PAPAPAAAPAAAAR--PAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIP 527

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*..
gi 2002298153  475 APNTPKEPAPTTPKEPAPTTPKEPESTTPKEP--APTTPKEPAPTTP 519
Cdd:PRK12323   528 DPATADPDDAFETLAPAPAAAPAPRAAAATEPvvAPRPPRASASGLP 574
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 445-596 8.56e-11

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 66.43  E-value: 8.56e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  445 PTTKKPEPTTPKEPAPTTPKEPAPTTPKEP-APNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPa 523
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAvAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAK- 439

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2002298153  524 pttPKEPAPTTPKEPAPTTPK---EPAPTTPKEPAPTTPKEPAPTTPKEPVPTtpKEPASTTPKEPAPTTPKEPAP 596
Cdd:PRK07994   440 ---KSEPAAASRARPVNSALErlaSVRPAPSALEKAPAKKEAYRWKATNPVEV--KKEPVATPKALKKALEHEKTP 510
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 490-569 8.83e-11

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 66.84  E-value: 8.83e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  490 PAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 569
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 455-604 8.93e-11

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 66.43  E-value: 8.93e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  455 PKEPAPTTPKEPAPTTPKEPAPNTPkEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTT 534
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQATA-APTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAK 439

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2002298153  535 PKEPAPTTPKEPAPTTPK---EPAPTTPKEPAPTTPKEPVPTTPKEPASTtpKEPAPTTPKEPAPTTPKEPAP 604
Cdd:PRK07994   440 KSEPAAASRARPVNSALErlaSVRPAPSALEKAPAKKEAYRWKATNPVEV--KKEPVATPKALKKALEHEKTP 510
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
 389-510 9.68e-11

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteriztic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 60.84  E-value: 9.68e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  389 PTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAP-TTKKPEPTTPKEPAPTTPKEPA 467
Cdd:pfam02389    8 PCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPcCPKVPEPCYPKVPEPCSPKVPE 87

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 2002298153  468 PTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPEsttpkePAPTT 510
Cdd:pfam02389   88 PCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPE------PCPST 124
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 242-654 1.08e-10

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 66.33  E-value: 1.08e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  242 TASPKTTAAKPVTPKPSLAPNSETSKEASSTSNKETTVETKETTETNKQSSASKKEKTTSAKETRSAENTSAKDV----- 316
Cdd:pfam03154   91 TEEPERATAKKSKTQEISRPNSPSEGEGESSDGRSVNDEGSSDPKDIDQDNRSTSPSIPSPQDNESDSDSSAQQQilqtq 170

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  317 EPTSTTPKNSAPTTTKKPVTTTKEPVPTTTKGPEPTSKEPAPTTPKEPELTIPKEPAPT----------TKKPAPTTPKE 386
Cdd:pfam03154  171 PPVLQAQSGAASPPSPPPPGTTQAATAGPTPSAPSVPPQGSPATSQPPNQTQSTAAPHTliqqtptlhpQRLPSPHPPLQ 250

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  387 PAPTTPkePEPTTPKESAPTT-----------PKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTP 455
Cdd:pfam03154  251 PMTQPP--PPSQVSPQPLPQPslhgqmppmphSLQTGPSHMQHPVPPQPFPLTPQSSQSQVPPGPSPAAPGQSQQRIHTP 328

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  456 KEPAPTTPKEPAPTTPKEPAPNT------------PKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPA 523
Cdd:pfam03154  329 PSQSQLQSQQPPREQPLPPAPLSmphikpppttpiPQLPNPQSHKHPPHLSGPSPFQMNSNLPPPPALKPLSSLSTHHPP 408

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  524 PTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPA-STTPKEPAPTTPKEPAPTTPKEP 602
Cdd:pfam03154  409 SAHPPPLQLMPQSQQLPPPPAQPPVLTQSQSLPPPAASHPPTSGLHQVPSQSPFPQhPFVPGGPPPITPPSGPPTSTSSA 488

                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 2002298153  603 APTT-PKEPAPTTPKEPAPTTPKE--PALTTPKEPAPTPKEPEPTTPKEPAPTTP 654
Cdd:pfam03154  489 MPGIqPPSSASVSSSGPVPAAVSCplPPVQIKEEALDEAEEPESPPPPPRSPSPE 543
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 411-564 1.17e-10

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 66.04  E-value: 1.17e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  411 PAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTP-KEPAPNTPKEPAPTTPKE 489
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQlLAARQQLQRAQGATKAKK 440

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2002298153  490 PAPTTPKEPESTtPKEPAPTTPKEPAPTTPkePAPTTPKEPAPTTPKEPAPTtpKEPAPTTPKEPAPTTPKEPAP 564
Cdd:PRK07994   441 SEPAAASRARPV-NSALERLASVRPAPSAL--EKAPAKKEAYRWKATNPVEV--KKEPVATPKALKKALEHEKTP 510
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 395-556 1.21e-10

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 66.04  E-value: 1.21e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  395 PEPTTPKESAPTTPKEPAPTTPKEPApttpkePAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEP 474
Cdd:PRK07994   366 PEPEVPPQSAAPAASAQATAAPTAAV------APPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAK 439

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  475 apntPKEPAPTTPKEPAPTTpkePESTTPKEPAPTTPkePAPTTPKEPAPTTPKEPAPTtpKEPAPTTPKEPAPTTPKEP 554
Cdd:PRK07994   440 ----KSEPAAASRARPVNSA---LERLASVRPAPSAL--EKAPAKKEAYRWKATNPVEV--KKEPVATPKALKKALEHEK 508


                   ..
gi 2002298153  555 AP 556
Cdd:PRK07994   509 TP 510
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
400-571 1.29e-10

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 65.75  E-value: 1.29e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  400 PKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPkePAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTP 479
Cdd:PRK14948   363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATT--PSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPSLN 440

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  480 KEPA----------PTT------------------------------------------------------PKEPAPTTP 495
Cdd:PRK14948   441 LEELwqqilaklelPSTrmllsqqaelvsldsnraviavspnwlgmvqsrkplleqafakvlgrsiklnleSQSGSASNT 520

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2002298153  496 KEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTP-KEPAPTTPKEPV 571
Cdd:PRK14948   521 AKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPtPSPTKDSSPEEI 597
PHA03379 PHA03379
EBNA-3A; Provisional
 471-714 1.31e-10

EBNA-3A; Provisional


Pssm-ID: 223066 [Multi-domain]  Cd Length: 935  Bit Score: 66.24  E-value: 1.31e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  471 PKEPAPNTPKEPAPttpkEPAPTTPKEPESTTpkEPAPTTPKEPAPTTPKEPAPTTPKEPApttpkEPAPTTPKEPAPTT 550
Cdd:PHA03379   408 ASEPTYGTPRPPVE----KPRPEVPQSLETAT--SHGSAQVPEPPPVHDLEPGPLHDQHSM-----APCPVAQLPPGPLQ 476

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  551 PKEPA---PTTPKEPAPTTPKEPVPTTPkepaSTTPKEPAPT-TPKE-PAPTTPkEPAPTTPkEPAPTTPKE-PAPTTPK 624
Cdd:PHA03379   477 DLEPGdqlPGVVQDGRPACAPVPAPAGP----IVRPWEASLSqVPGVaFAPVMP-QPMPVEP-VPVPTVALErPVCPAPP 550

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  625 EPALTTPKEPAPTPKEPEPTTPKEPAPTTPKEPAPtTPKEPAPTTKKPELTIPKEPVPTTPKEPAPTTPKEPAPTTTKKP 704
Cdd:PHA03379   551 LIAMQGPGETSGIVRVRERWRPAPWTPNPPRSPSQ-MSVRDRLARLRAEAQPYQASVEVQPPQLTQVSPQQPMEYPLEPE 629

                          250
                   ....*....|
gi 2002298153  705 ELSTPKEPTS 714
Cdd:PHA03379   630 QQMFPGSPFS 639
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 388-654 1.42e-10

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 65.33  E-value: 1.42e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  388 APTTPKEpEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEP-APTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEP 466
Cdd:PLN03209   311 APLTPME-ELLAKIPSQRVPPKESDAADGPKPVPTKPVTPeAPSPPIEEEPPQPKAVVPRPLSPYTAYEDLKPPTSPIPT 389

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  467 APTTPKEPAPNTPKEPAPTTPKepAPTTPKEPESTTPKEPAPTTPKEpapTTPKEPAPTTPKEPAPTTPKEPAPTTPKEP 546
Cdd:PLN03209   390 PPSSSPASSKSVDAVAKPAEPD--VVPSPGSASNVPEVEPAQVEAKK---TRPLSPYARYEDLKPPTSPSPTAPTGVSPS 464

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  547 APTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEP 626
Cdd:PLN03209   465 VSSTSSVPAVPDTAPATAATDAAAPPPANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADE 544

                          250       260
                   ....*....|....*....|....*...
gi 2002298153  627 ALTTpkEPAPTPKEPEPTTPKEPAPTTP 654
Cdd:PLN03209   545 QHHA--QPKPRPLSPYTMYEDLKPPTSP 570
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 426-556 1.48e-10

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 65.51  E-value: 1.48e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  426 EPAPTTPKEPAPTTPKEPAPttkKPEPTTPKEPAPTTPkePAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKE 505
Cdd:PRK14951   372 AAAPAEKKTPARPEAAAPAA---APVAQAAAAPAPAAA--PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVA 446

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 2002298153  506 PAPTTPKEPAPTTPKEPAPTTPkEPAPTTPkEPAPTTPKEPAPTTPKEPAP 556
Cdd:PRK14951   447 LAPAPPAQAAPETVAIPVRVAP-EPAVASA-APAPAAAPAAARLTPTEEGD 495
rne PRK10811
ribonuclease E; Reviewed
 468-658 1.76e-10

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 65.83  E-value: 1.76e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  468 PTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTpkEPAPTTPKEPAPTTpkEPAPTTPKEPAPTTPKEPA 547
Cdd:PRK10811   846 PVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVV--EAVAEVVEEPVVVA--EPQPEEVVVVETTHPEVIA 921

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  548 PTTPKEPAPTTPKEP--APTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPaptTPKE 625
Cdd:PRK10811   922 APVTEQPQVITESDVavAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETV---TAVE 998

                          170       180       190
                   ....*....|....*....|....*....|....*
gi 2002298153  626 PALTTPKEPAPTPKEPEPTTP--KEPAPTTPKEPA 658
Cdd:PRK10811   999 PEVAPAQVPEATVEHNHATAPmtRAPAPEYVPEAP 1033
rne PRK10811
ribonuclease E; Reviewed
 438-627 1.78e-10

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 65.83  E-value: 1.78e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  438 TTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTpkEPAPTTPKEPAPTTPKEPESTTPKEPapTTPKEPAPT 517
Cdd:PRK10811   848 VRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVV--EAVAEVVEEPVVVAEPQPEEVVVVET--THPEVIAAP 923

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  518 TPKEPAPTTPKEPAPttpkepAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPV-PTTPKEPASTTPKEPAPTTPKEPAP 596
Cdd:PRK10811   924 VTEQPQVITESDVAV------AQEVAEHAEPVVEPQDETADIEEAAETAEVVVAePEVVAQPAAPVVAEVAAEVETVTAV 997

                          170       180       190
                   ....*....|....*....|....*....|....*..
gi 2002298153  597 TTPKEPAPTTPKE------PAPTTpKEPAPTTPKEPA 627
Cdd:PRK10811   998 EPEVAPAQVPEATvehnhaTAPMT-RAPAPEYVPEAP 1033
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 515-609 2.24e-10

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 64.83  E-value: 2.24e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  515 APTTPKEPAPTTPKEPAPTTPKePAPTTPKEPAPTTPKEPAPTTPKepapTTPKEPVPTTPKEPASTTPKEPAPTTPKE- 593
Cdd:PRK14950   361 VPVPAPQPAKPTAAAPSPVRPT-PAPSTRPKAAAAANIPPKEPVRE----TATPPPVPPRPVAPPVPHTPESAPKLTRAa 435

                           90
                   ....*....|....*..
gi 2002298153  594 -PAPTTPKEPAPTTPKE 609
Cdd:PRK14950   436 iPVDEKPKYTPPAPPKE 452
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 515-641 2.29e-10

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 64.74  E-value: 2.29e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  515 APTTPKEPAPTTPKEPAPTTP-KEPAPTTPKEPAPTTPkePAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKE 593
Cdd:PRK14951   369 AAEAAAPAEKKTPARPEAAAPaAAPVAQAAAAPAPAAA--PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVA 446

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 2002298153  594 PAPTTPKEPAPTTPKEPAPTTPkEPAPTTPKEPALTTPKEPAPTPKEP 641
Cdd:PRK14951   447 LAPAPPAQAAPETVAIPVRVAP-EPAVASAAPAPAAAPAAARLTPTEE 493
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 402-532 2.41e-10

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 64.74  E-value: 2.41e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  402 ESAPTTPKEPAPTTPKEPAPTTP-KEPAPTTPKEPAPTTPkEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPK 480
Cdd:PRK14951   367 AAAAEAAAPAEKKTPARPEAAAPaAAPVAQAAAAPAPAAA-PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAV 445

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 2002298153  481 EPAPTTPKEPAPTTPKEPESTTPkEPAPTTPkEPAPTTPKEPAPTTPKEPAP 532
Cdd:PRK14951   446 ALAPAPPAQAAPETVAIPVRVAP-EPAVASA-APAPAAAPAAARLTPTEEGD 495
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 404-500 2.59e-10

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 64.83  E-value: 2.59e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  404 APTTPKEPAPTTPKEPAPTTPKePAPTTPKEPAPTTPKEPAPTtkKPEPTTPkEPAPTTPKEPAPTTPKEPAPNTPKE-- 481
Cdd:PRK14950   361 VPVPAPQPAKPTAAAPSPVRPT-PAPSTRPKAAAAANIPPKEP--VRETATP-PPVPPRPVAPPVPHTPESAPKLTRAai 436

                           90
                   ....*....|....*....
gi 2002298153  482 PAPTTPKEPAPTTPKEPES 500
Cdd:PRK14950   437 PVDEKPKYTPPAPPKEEEK 455
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 482-561 2.68e-10

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 65.30  E-value: 2.68e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  482 PAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 561
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 380-639 2.70e-10

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 64.56  E-value: 2.70e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  380 APTTPKEP--APTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKE 457
Cdd:PLN03209   311 APLTPMEEllAKIPSQRVPPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPYTAYEDLKPPTSPIPTP 390

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  458 PAPTTPKEP---APTTPKEPAPNTPKEPAPTTPKE---PAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPA 531
Cdd:PLN03209   391 PSSSPASSKsvdAVAKPAEPDVVPSPGSASNVPEVepaQVEAKKTRPLSPYARYEDLKPPTSPSPTAPTGVSPSVSSTSS 470

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  532 ptTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPkEPASTTPKEPAPTTPKepAPTTPKEPAPTTPKEPA 611
Cdd:PLN03209   471 --VPAVPDTAPATAATDAAAPPPANMRPLSPYAVYDDLKPPTSP-SPAAPVGKVAPSSTNE--VVKVGNSAPPTALADEQ 545

                          250       260       270
                   ....*....|....*....|....*....|
gi 2002298153  612 PTTPKEPAPTTP--KEPALTTPKEPAPTPK 639
Cdd:PLN03209   546 HHAQPKPRPLSPytMYEDLKPPTSPTPSPV 575
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 531-625 2.84e-10

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 64.45  E-value: 2.84e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  531 APTTPKEPAPTTPKEPAPTTPKePAPTTPKEPAPTTPKEPVPTTPkepaSTTPKEPAPTTPKEPAPTTPKEPAPTTPKE- 609
Cdd:PRK14950   361 VPVPAPQPAKPTAAAPSPVRPT-PAPSTRPKAAAAANIPPKEPVR----ETATPPPVPPRPVAPPVPHTPESAPKLTRAa 435

                           90
                   ....*....|....*..
gi 2002298153  610 -PAPTTPKEPAPTTPKE 625
Cdd:PRK14950   436 iPVDEKPKYTPPAPPKE 452
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 369-524 2.93e-10

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 64.50  E-value: 2.93e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  369 PKEPAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTtPKEPAPTTPKEPAPTTPKEPAPTTK 448
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVP-LPETTSQLLAARQQLQRAQGATKAK 439

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2002298153  449 KPEPTTPKEPAPTtPKEPAPTTPKEPAPNTPkePAPTTPKEPAPTTPKEPESTtpKEPAPTTPKEPAPTTPKEPAP 524
Cdd:PRK07994   440 KSEPAAASRARPV-NSALERLASVRPAPSAL--EKAPAKKEAYRWKATNPVEV--KKEPVATPKALKKALEHEKTP 510
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 562-650 3.48e-10

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 64.91  E-value: 3.48e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  562 PAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAltTPKEPAPTPKEP 641
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAA--AAAAPAAAAVED 115


                   ....*....
gi 2002298153  642 EPTTPKEPA 650
Cdd:PRK12270   116 EVTPLRGAA 124
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 466-620 3.51e-10

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 64.50  E-value: 3.51e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  466 PAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 545
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK 440

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2002298153  546 PAPTTPKEPAPtTPKEPAPTTPKEPVPTTPkePASTTPKEPAPTTPKEPAPTtpKEPAPTTPKEPAPTTPKEPAP 620
Cdd:PRK07994   441 SEPAAASRARP-VNSALERLASVRPAPSAL--EKAPAKKEAYRWKATNPVEV--KKEPVATPKALKKALEHEKTP 510
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 531-659 3.52e-10

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 64.35  E-value: 3.52e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  531 APTTPKEPAPTTPKEPAPTTP-KEPAPTTPKEPAPTTPkePVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 609
Cdd:PRK14951   369 AAEAAAPAEKKTPARPEAAAPaAAPVAQAAAAPAPAAA--PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVA 446

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 2002298153  610 PAPTTPKEPAPTTPKEPALTTPkEPAPTPKEPEPTTPKEPAPTTPKEPAP 659
Cdd:PRK14951   447 LAPAPPAQAAPETVAIPVRVAP-EPAVASAAPAPAAAPAAARLTPTEEGD 495
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 491-620 3.58e-10

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 64.35  E-value: 3.58e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  491 APTTPKEPESTTPKEPAPTTP-KEPAPTTPKEPAPTTPkePAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 569
Cdd:PRK14951   369 AAEAAAPAEKKTPARPEAAAPaAAPVAQAAAAPAPAAA--PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVA 446

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 2002298153  570 PVPTTPKEPASTTPKEPAPTTPkEPAPTTPkEPAPTTPKEPAPTTPKEPAP 620
Cdd:PRK14951   447 LAPAPPAQAAPETVAIPVRVAP-EPAVASA-APAPAAAPAAARLTPTEEGD 495
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 457-585 3.61e-10

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 64.35  E-value: 3.61e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  457 EPAPTTPKEPAPTTPKEPAPntpkEPAPTTPKEPAPTTPkePESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPK 536
Cdd:PRK14951   372 AAAPAEKKTPARPEAAAPAA----APVAQAAAAPAPAAA--PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAV 445

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*....
gi 2002298153  537 EPAPTTPKEPAPTTPKEPAPTTPkEPAPTTPKEPVPTTPKEPASTTPKE 585
Cdd:PRK14951   446 ALAPAPPAQAAPETVAIPVRVAP-EPAVASAAPAPAAAPAAARLTPTEE 493
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 419-507 3.72e-10

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 64.53  E-value: 3.72e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  419 PAPTTPKEPAPTTPKEPAPTTPkePAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEP 498
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPA--AAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVED 115


                   ....*....
gi 2002298153  499 ESTTPKEPA 507
Cdd:PRK12270   116 EVTPLRGAA 124
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 530-609 4.09e-10

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 64.53  E-value: 4.09e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  530 PAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 609
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 514-593 4.19e-10

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 64.53  E-value: 4.19e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  514 PAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKE 593
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 475-604 4.21e-10

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 63.97  E-value: 4.21e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  475 APNTPKEPAPTTPKEPAPTTP-KEPESTTPKEPAPTTPkePAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 553
Cdd:PRK14951   369 AAEAAAPAEKKTPARPEAAAPaAAPVAQAAAAPAPAAA--PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVA 446

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 2002298153  554 PAPTTPKEPAPTTPKEPVPTTPkEPASTTPkEPAPTTPKEPAPTTPKEPAP 604
Cdd:PRK14951   447 LAPAPPAQAAPETVAIPVRVAP-EPAVASA-APAPAAAPAAARLTPTEEGD 495
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 474-553 4.37e-10

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 64.53  E-value: 4.37e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  474 PAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 553
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
 417-534 4.41e-10

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteriztic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 58.91  E-value: 4.41e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  417 KEPAPTTPKEPAPTTPKEPAPTTPKEPApTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPK 496
Cdd:pfam02389    6 KQPCQPPPQEPCVPTTKEPCHSKVPEPC-NPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPK 84

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 2002298153  497 EPESTTPKEPAPTTPKEPAPTTPKEPAPTTP--KEPAPTT 534
Cdd:pfam02389   85 VPEPCHPKAPEPCHPKVPEPCYPKAPEPCQPkvPEPCPST 124
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 483-612 4.55e-10

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 63.97  E-value: 4.55e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  483 APTTPKEPAPTTPKEPESTTP-KEPAPTTPKEPAPTTPkePAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 561
Cdd:PRK14951   369 AAEAAAPAEKKTPARPEAAAPaAAPVAQAAAAPAPAAA--PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVA 446

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 2002298153  562 PAPTTPKEPVPTTPKEPASTTPkEPAPTTPkEPAPTTPKEPAPTTPKEPAP 612
Cdd:PRK14951   447 LAPAPPAQAAPETVAIPVRVAP-EPAVASA-APAPAAAPAAARLTPTEEGD 495
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 522-601 4.60e-10

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 64.53  E-value: 4.60e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  522 PAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKE 601
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
rne PRK10811
ribonuclease E; Reviewed
 460-650 4.96e-10

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 64.29  E-value: 4.96e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  460 PTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTpkEPAPTTPKEPAPTTpkEPAPTTPKEPAPTTPKEPA 539
Cdd:PRK10811   846 PVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVV--EAVAEVVEEPVVVA--EPQPEEVVVVETTHPEVIA 921

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  540 PTTPKEPAPTTPKEP--APTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPaptTPKE 617
Cdd:PRK10811   922 APVTEQPQVITESDVavAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETV---TAVE 998

                          170       180       190
                   ....*....|....*....|....*....|....*
gi 2002298153  618 PAPTTPKEPALTTPKE--PAPTPKEPEPTTPKEPA 650
Cdd:PRK10811   999 PEVAPAQVPEATVEHNhaTAPMTRAPAPEYVPEAP 1033
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 357-602 5.24e-10

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 63.79  E-value: 5.24e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  357 APTTPKEPELTIPKEPAPTTKKPAPTTPKEPAPTTPKEPEPTTPK-ESAPTTPKEPA--------------PTTPKEPAP 421
Cdd:PLN03209   311 APLTPMEELLAKIPSQRVPPKESDAADGPKPVPTKPVTPEAPSPPiEEEPPQPKAVVprplspytayedlkPPTSPIPTP 390

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  422 TTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPN--TPKEPAPTTPKEPAPTTPKepE 499
Cdd:PLN03209   391 PSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSPYARYEDlkPPTSPSPTAPTGVSPSVSS--T 468

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  500 STTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPkEPAPTTPKEPAPTTPKepAPTTPKEPVPTTPKEPA 579
Cdd:PLN03209   469 SSVPAVPDTAPATAATDAAAPPPANMRPLSPYAVYDDLKPPTSP-SPAAPVGKVAPSSTNE--VVKVGNSAPPTALADEQ 545

                          250       260       270
                   ....*....|....*....|....*....|
gi 2002298153  580 STTPKEPAPTTP-------KEPAPTTPKEP 602
Cdd:PLN03209   546 HHAQPKPRPLSPytmyedlKPPTSPTPSPV 575
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 458-612 5.57e-10

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 63.73  E-value: 5.57e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  458 PAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 537
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK 440

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2002298153  538 PAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVpttPKEPASTTPKEPAPTtpKEPAPTTPKEPAPTTPKEPAP 612
Cdd:PRK07994   441 SEPAAASRARPVNSALERLASVRPAPSALEKAPA---KKEAYRWKATNPVEV--KKEPVATPKALKKALEHEKTP 510
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
503-676 5.65e-10

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 63.83  E-value: 5.65e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  503 PKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPkePAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTT 582
Cdd:PRK14948   363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATT--PSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPSLN 440

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  583 PKE---------PAPTT------------------------------------------------------PKEPAPTTP 599
Cdd:PRK14948   441 LEElwqqilaklELPSTrmllsqqaelvsldsnraviavspnwlgmvqsrkplleqafakvlgrsiklnleSQSGSASNT 520

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2002298153  600 KEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPELTI 676
Cdd:PRK14948   521 AKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTPSPTKDSSPEEI 597
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 587-680 6.05e-10

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 63.68  E-value: 6.05e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  587 APTTPKEPAPTTPKEPAPTTPKePAPTTPKEPAPTTPKEPAlttPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPA 666
Cdd:PRK14950   361 VPVPAPQPAKPTAAAPSPVRPT-PAPSTRPKAAAAANIPPK---EPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAI 436

                           90
                   ....*....|....
gi 2002298153  667 PTTKKPELTIPKEP 680
Cdd:PRK14950   437 PVDEKPKYTPPAPP 450
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 458-537 6.13e-10

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 64.14  E-value: 6.13e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  458 PAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 537
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 351-508 6.23e-10

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 63.73  E-value: 6.23e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  351 PTSKEPAPTTPKEPELTIPKEPAPttkkPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPT 430
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQAT----AAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGAT 436

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2002298153  431 TPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPkePAPTTPKEPAPNTPKEPAPTtpKEPAPTTPKEPESTTPKEPAP 508
Cdd:PRK07994   437 KAKKSEPAAASRARPVNSALERLASVRPAPSAL--EKAPAKKEAYRWKATNPVEV--KKEPVATPKALKKALEHEKTP 510
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 538-617 6.24e-10

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 64.14  E-value: 6.24e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  538 PAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 617
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 432-564 6.24e-10

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 63.58  E-value: 6.24e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  432 PKEPAPTTPKEPAPTTKKPEPTTP-KEPAPTTPKEPAPTTPkePAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTT 510
Cdd:PRK14951   366 PAAAAEAAAPAEKKTPARPEAAAPaAAPVAQAAAAPAPAAA--PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPA 443

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 2002298153  511 PKEPAPTTPKEPAPTTPKEPAPTTPkEPAPTTPkEPAPTTPKEPAPTTPKEPAP 564
Cdd:PRK14951   444 AVALAPAPPAQAAPETVAIPVRVAP-EPAVASA-APAPAAAPAAARLTPTEEGD 495
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
392-562 6.26e-10

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 63.44  E-value: 6.26e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  392 PKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPkePAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTP 471
Cdd:PRK14948   363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATT--PSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPSLN 440

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  472 KEP------------------------------------APN----------------------------TPKEPAPTTP 487
Cdd:PRK14948   441 LEElwqqilaklelpstrmllsqqaelvsldsnraviavSPNwlgmvqsrkplleqafakvlgrsiklnlESQSGSASNT 520

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2002298153  488 KEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPkEPAPTTPKEPAPTTPKEP 562
Cdd:PRK14948   521 AKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSP-PPPIPEEPTPSPTKDSSP 594
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 446-529 6.91e-10

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 63.76  E-value: 6.91e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  446 TTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPT 525
Cdd:PRK12270    34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAV 113


                   ....
gi 2002298153  526 TPKE 529
Cdd:PRK12270   114 EDEV 117
rne PRK10811
ribonuclease E; Reviewed
 359-547 7.01e-10

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 63.91  E-value: 7.01e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  359 TTPKEPELTIPKEPAPTTKKPAPTTPKEPAPTTPKEPEPTTpkESAPTTPKEPAPTTPKEPAPTTPKE-PAPTTPKEPAP 437
Cdd:PRK10811   848 VRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVV--EAVAEVVEEPVVVAEPQPEEVVVVEtTHPEVIAAPVT 925

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  438 TTPKEPAPTTKKPEPTTPKEPAPTTPkEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPT 517
Cdd:PRK10811   926 EQPQVITESDVAVAQEVAEHAEPVVE-PQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPA 1004

                          170       180       190
                   ....*....|....*....|....*....|
gi 2002298153  518 TPKEPAPTTPKEPAPTTpKEPAPTTPKEPA 547
Cdd:PRK10811  1005 QVPEATVEHNHATAPMT-RAPAPEYVPEAP 1033
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 546-628 7.08e-10

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 63.76  E-value: 7.08e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  546 PAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 625
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117


                   ...
gi 2002298153  626 PAL 628
Cdd:PRK12270   118 TPL 120
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 375-926 7.10e-10

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 63.56  E-value: 7.10e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  375 TTKKPAPTTPKEpaptTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPapTTPKEPAPTTPKEPAPTTKKPEPTT 454
Cdd:PTZ00449   492 SKKKLAPIEEED----SDKHDEPPEGPEASGLPPKAPGDKEGEEGEHEDSKES--DEPKEGGKPGETKEGEVGKKPGPAK 565

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  455 PKEPA--PTTPKEPA-PTTPKEPA-PNTPKEP-APTTPKEP-APTTPKEPESTTpkepAPTTPKEP-APTTPKEPAPTTp 527
Cdd:PTZ00449   566 EHKPSkiPTLSKKPEfPKDPKHPKdPEEPKKPkRPRSAQRPtRPKSPKLPELLD----IPKSPKRPeSPKSPKRPPPPQ- 640

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  528 kepAPTTPKEP-APTTPKEPAPttpkepaPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTT 606
Cdd:PTZ00449   641 ---RPSSPERPeGPKIIKSPKP-------PKSPKPPFDPKFKEKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPET 710

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  607 PKEPAPTtpkePAPTTPKEPalTTPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPELTipKEPVPTTPK 686
Cdd:PTZ00449   711 PGTPFTT----PRPLPPKLP--RDEEFPFEPIGDPDAEQPDDIEFFTPPEEERTFFHETPADTPLPDIL--AEEFKEEDI 782

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  687 EPAPTTPKEPapttTKKPELSTPKEPTSTNPkepEPTLPKEpeltlpeepepsnPETSDELiaelaeAPTPKALENNP-- 764
Cdd:PTZ00449   783 HAETGEPDEA----MKRPDSPSEHEDKPPGD---HPSLPKK-------------RHRLDGL------ALSTTDLESDAgr 836

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  765 --KEPTVPTETPEVSKP--EMTTAKEKTTEKDTtqttttvtpktttettiipeetteprastttritstaqdttspqmtt 840
Cdd:PTZ00449   837 iaKDASGKIVKLKRSKSfdDLTTVEEAEEMGAE----------------------------------------------- 869

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  841 lkattlAAKVTAPTEEIQSKPEETTlttpalEGSDASKTTLKPQKPTKAPKKPastkkptkapkkpTSTKKPKTPkgRKP 920
Cdd:PTZ00449   870 ------ARKIVVDDDGTEADDEDTH------PPEEKHKSEVRRRRPPKKPSKP-------------KKPSKPKKP--KKP 922


                   ....*.
gi 2002298153  921 KTTPSP 926
Cdd:PTZ00449   923 DSAFIP 928
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 539-667 7.41e-10

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 63.19  E-value: 7.41e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  539 APTTPKEPAPTTPKEPAPTTP-KEPAPTTPKEPVPTTPkePASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 617
Cdd:PRK14951   369 AAEAAAPAEKKTPARPEAAAPaAAPVAQAAAAPAPAAA--PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVA 446

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 2002298153  618 PAPTTPKEPALTTPKEPAPTPKEPEPTTPkEPAPTTPKEPAPTTPKEPAP 667
Cdd:PRK14951   447 LAPAPPAQAAPETVAIPVRVAPEPAVASA-APAPAAAPAAARLTPTEEGD 495
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
 413-526 7.81e-10

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteriztic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 58.14  E-value: 7.81e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  413 PTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAP-TTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPA 491
Cdd:pfam02389    8 PCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPcCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVPE 87

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 2002298153  492 PTTPKEPESTTPKEPAPTTPKEPAPTTP--KEPAPTT 526
Cdd:pfam02389   88 PCHPKAPEPCHPKVPEPCYPKAPEPCQPkvPEPCPST 124
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
408-586 8.10e-10

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 63.06  E-value: 8.10e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  408 PKEPAPTTPKEPAPTTPKEPAPTTPKEPAPttpkePAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTP 487
Cdd:PRK14948   363 AFISEIANASAPANPTPAPNPSPPPAPIQP-----SAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPANAANAPP 437

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  488 KE-------------PAPTT-------------------------------PKEPESTTP---------------KEPAP 508
Cdd:PRK14948   438 SLnleelwqqilaklELPSTrmllsqqaelvsldsnraviavspnwlgmvqSRKPLLEQAfakvlgrsiklnlesQSGSA 517

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2002298153  509 TTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTP-KEPASTTPKEP 586
Cdd:PRK14948   518 SNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPtPSPTKDSSPEE 596
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 452-545 8.24e-10

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 62.90  E-value: 8.24e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  452 PTTPKEPAPTTPKEPAPTTPKePAPNTPKEPAPTTPKEPAPTTPkepeSTTPKEPAPTTPKEPAPTTPKEPAPTTPKE-- 529
Cdd:PRK14950   362 PVPAPQPAKPTAAAPSPVRPT-PAPSTRPKAAAAANIPPKEPVR----ETATPPPVPPRPVAPPVPHTPESAPKLTRAai 436

                           90
                   ....*....|....*.
gi 2002298153  530 PAPTTPKEPAPTTPKE 545
Cdd:PRK14950   437 PVDEKPKYTPPAPPKE 452
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 467-561 8.24e-10

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 62.90  E-value: 8.24e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  467 APTTPKEPAPNTPKEPAPTTPKePAPTTPkepesTTPKEPAPTTPKEPAPTT-PKEPAPTTPKEPAPTTPKEPAPTTPKE 545
Cdd:PRK14950   361 VPVPAPQPAKPTAAAPSPVRPT-PAPSTR-----PKAAAAANIPPKEPVRETaTPPPVPPRPVAPPVPHTPESAPKLTRA 434

                           90
                   ....*....|....*...
gi 2002298153  546 --PAPTTPKEPAPTTPKE 561
Cdd:PRK14950   435 aiPVDEKPKYTPPAPPKE 452
PHA03247 PHA03247
large tegument protein UL36; Provisional
 483-717 8.87e-10

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 63.80  E-value: 8.87e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  483 APTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPkePAPTTPKEPAPTTPKEPAPTTPKEP 562
Cdd:PHA03247   254 APAPPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVWGAALAGAP--LALPAPPDPPPPAPAGDAEEEDDED 331

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  563 APTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPE 642
Cdd:PHA03247   332 GAMEVVSPLPRPRQHYPLGFPKRRRPTWTPPSSLEDLSAGRHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPV 411

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2002298153  643 PTTPKEPAPTTPKEPAPTTPKEPAPTTKKPELTIPKEPVPTTPKEPApTTPKEPAPTTTKKPELSTPKEPTSTNP 717
Cdd:PHA03247   412 PASVPTPAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPA-TEPAPDDPDDATRKALDALRERRPPEP 485
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
 381-494 9.56e-10

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteriztic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 58.14  E-value: 9.56e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  381 PTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPT-TKKPEPTTPKEPA 459
Cdd:pfam02389    8 PCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCyPKVPEPCSPKVPE 87

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 2002298153  460 PTTPKEPAPTTPKEPAPNTPKEPAPTTP--KEPAPTT 494
Cdd:pfam02389   88 PCHPKAPEPCHPKVPEPCYPKAPEPCQPkvPEPCPST 124
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 387-532 9.89e-10

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 62.96  E-value: 9.89e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  387 PAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTtpkEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPK-E 465
Cdd:PRK07994   366 PEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPP---PPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKsE 442

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2002298153  466 PAPTTPKEPAPNTPKEPAPTTP-KEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAP 532
Cdd:PRK07994   443 PAAASRARPVNSALERLASVRPaPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTP 510
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 506-626 1.00e-09

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 62.81  E-value: 1.00e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  506 PAPTTPKEPAPTTP-KEPAPTTPKEPAPTTPkePAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPK 584
Cdd:PRK14951   376 AEKKTPARPEAAAPaAAPVAQAAAAPAPAAA--PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPA 453

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 2002298153  585 EPAPTTPKEPAPTTPkEPAPTTPkEPAPTTPKEPAPTTPKEP 626
Cdd:PRK14951   454 QAAPETVAIPVRVAP-EPAVASA-APAPAAAPAAARLTPTEE 493
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 443-575 1.07e-09

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 62.81  E-value: 1.07e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  443 PAPTTKKPEPTTPKEPAPTTPKEPAPttpkEPAPNTPKEPAPTTPkePAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEP 522
Cdd:PRK14951   366 PAAAAEAAAPAEKKTPARPEAAAPAA----APVAQAAAAPAPAAA--PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPA 439

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 2002298153  523 APTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTP 575
Cdd:PRK14951   440 AAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 395-474 1.07e-09

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 63.37  E-value: 1.07e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  395 PEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPkePAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEP 474
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAP--PKPAAAAAAAAAPAAPPAAAAAAAPAAAAVED 115
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 440-570 1.13e-09

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 62.81  E-value: 1.13e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  440 PKEPAPTTKKPEPTTPKEPAPTTP-KEPAPTTPKEPAPNTPkePAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTT 518
Cdd:PRK14951   366 PAAAAEAAAPAEKKTPARPEAAAPaAAPVAQAAAAPAPAAA--PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPA 443

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 2002298153  519 PKEPAPTTPKEPAPTTPKEPAPTTPkEPAPTTPkEPAPTTPKEPAPTTPKEP 570
Cdd:PRK14951   444 AVALAPAPPAQAAPETVAIPVRVAP-EPAVASA-APAPAAAPAAARLTPTEE 493
PHA03379 PHA03379
EBNA-3A; Provisional
 344-695 1.40e-09

EBNA-3A; Provisional


Pssm-ID: 223066 [Multi-domain]  Cd Length: 935  Bit Score: 62.77  E-value: 1.40e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  344 TTTKGPEPTSKEPAPTTPK-EPELTIPKEPAPTTkkpAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPT 422
Cdd:PHA03379   404 ALEKASEPTYGTPRPPVEKpRPEVPQSLETATSH---GSAQVPEPPPVHDLEPGPLHDQHSMAPCPVAQLPPGPLQDLEP 480

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  423 TPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKE-----PAPTTPkEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKE 497
Cdd:PHA03379   481 GDQLPGVVQDGRPACAPVPAPAGPIVRPWEASLSQvpgvaFAPVMP-QPMPVEPVPVPTVALERPVCPAPPLIAMQGPGE 559

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  498 P-------ESTTPKEPAPTTPKEPAPTTPKE-PAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 569
Cdd:PHA03379   560 TsgivrvrERWRPAPWTPNPPRSPSQMSVRDrLARLRAEAQPYQASVEVQPPQLTQVSPQQPMEYPLEPEQQMFPGSPFS 639

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  570 PVPTTPKEPASTTPKEPAPTTP-----KEPAPTTPKEpAPTTPKEPAPTTPKEPAPTTPKEPALT-------TPKEPAPT 637
Cdd:PHA03379   640 QVADVMRAGGVPAMQPQYFDLPlqqpiSQGAPLAPLR-ASMGPVPPVPATQPQYFDIPLTEPINQgasaahfLPQQPMEG 718

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 2002298153  638 PKEPEPTTPKEPAPTTPKEPAPTTPKE-PAPTTKKPELTIPKEPVPTTPKEPAPTTPKE 695
Cdd:PHA03379   719 PLVPERWMFQGATLSQSVRPGVAQSQYfDLPLTQPINHGAPAAHFLHQPPMEGPWVPEQ 777
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 571-664 1.50e-09

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 62.13  E-value: 1.50e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  571 VPTTPKEPASTTPKEPAPTTPKePAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKepaPTPKEPEPTTPKE-- 648
Cdd:PRK14950   361 VPVPAPQPAKPTAAAPSPVRPT-PAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPV---PHTPESAPKLTRAai 436

                           90
                   ....*....|....*.
gi 2002298153  649 PAPTTPKEPAPTTPKE 664
Cdd:PRK14950   437 PVDEKPKYTPPAPPKE 452
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 410-540 1.52e-09

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 62.42  E-value: 1.52e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  410 EPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPttpkePAPTTPKEPAPNTPKEPAPTTPKE 489
Cdd:PRK14951   372 AAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAP-----PAPVAAPAAAAPAAAPAAAPAAVA 446

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 2002298153  490 PAPTTPKEPESTTPKEPAPTTPkEPAPTTPkEPAPTTPKEPAPTTPKEPAP 540
Cdd:PRK14951   447 LAPAPPAQAAPETVAIPVRVAP-EPAVASA-APAPAAAPAAARLTPTEEGD 495
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 369-498 1.60e-09

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 62.04  E-value: 1.60e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  369 PKEPAPTTKKPAPTTPKEPAPTTP-KEPEPTTPKESAPTTPkePAPTTPKEPAPTTPKEPAPTTPKEP-APTTPKEPAPT 446
Cdd:PRK14951   366 PAAAAEAAAPAEKKTPARPEAAAPaAAPVAQAAAAPAPAAA--PAAAASAPAAPPAAAPPAPVAAPAAaAPAAAPAAAPA 443

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 2002298153  447 TKKPEPTTPKEPAPTTPKEPAPTTPkEPAPNTPkEPAPTTPKEPAPTTPKEP 498
Cdd:PRK14951   444 AVALAPAPPAQAAPETVAIPVRVAP-EPAVASA-APAPAAAPAAARLTPTEE 493
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
 354-471 1.63e-09

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteriztic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 57.37  E-value: 1.63e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  354 KEPAPTTPKEPELTIPKEPApTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPK 433
Cdd:pfam02389    6 KQPCQPPPQEPCVPTTKEPC-HSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPK 84

                           90       100       110
                   ....*....|....*....|....*....|....*....
gi 2002298153  434 EPAPTTPKEPAPTTKK-PEPTTPKEPAPTTPKEPAPTTP 471
Cdd:pfam02389   85 VPEPCHPKAPEPCHPKvPEPCYPKAPEPCQPKVPEPCPS 123
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 578-677 1.66e-09

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 62.60  E-value: 1.66e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  578 PASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAltTPKEPAPTPKEPEPTTPKEPAPTTPKEP 657
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPA--AAAAAAAAPAAPPAAAAAAAPAAAAVED 115

                           90       100
                   ....*....|....*....|...
gi 2002298153  658 APTTPKEPAPTTKK---PELTIP 677
Cdd:PRK12270   116 EVTPLRGAAAAVAKnmdASLEVP 138
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 547-669 1.84e-09

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 62.04  E-value: 1.84e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  547 APTTPKEPAPTTPKEPAPTTP-KEPVPTTPKEPASTTPkePAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 625
Cdd:PRK14951   369 AAEAAAPAEKKTPARPEAAAPaAAPVAQAAAAPAPAAA--PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVA 446

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 2002298153  626 PALTTPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAPTT 669
Cdd:PRK14951   447 LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTP 490
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 523-651 2.07e-09

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 61.65  E-value: 2.07e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  523 APTTPKEPAPTTPKEPAPTTP-KEPAPTTPKEPAPTTPkePAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKE 601
Cdd:PRK14951   369 AAEAAAPAEKKTPARPEAAAPaAAPVAQAAAAPAPAAA--PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVA 446

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 2002298153  602 PAPTTPKEPAPTTPKEPAPTTPkEPALTTPKEPAPTPKEPEPTTPKEPAP 651
Cdd:PRK14951   447 LAPAPPAQAAPETVAIPVRVAP-EPAVASAAPAPAAAPAAARLTPTEEGD 495
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
 556-672 2.26e-09

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteriztic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 56.99  E-value: 2.26e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  556 PTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPA 635
Cdd:pfam02389    8 PCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVPE 87

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 2002298153  636 PT-PKEPEPTTPKEPAPTTPKEPAPTTPK--EPAPTTKKP 672
Cdd:pfam02389   88 PChPKAPEPCHPKVPEPCYPKAPEPCQPKvpEPCPSTVTP 127
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 352-771 2.29e-09

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 62.09  E-value: 2.29e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  352 TSKEPAPTTPKEPELTIPKEPAPTTKKPAPTTPK------EPAPTTPKEPEPTTPKESapttpKEPAPTTPKEPAPTTPK 425
Cdd:pfam03154   45 NSPSAASTSSNDSKAESMKKSSKKIKEEAPSPLKsakrqrEKGASDTEEPERATAKKS-----KTQEISRPNSPSEGEGE 119

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  426 EPAPTTPKEPAPTTPKEPAPTTKKPEPT--TPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTP 503
Cdd:pfam03154  120 SSDGRSVNDEGSSDPKDIDQDNRSTSPSipSPQDNESDSDSSAQQQILQTQPPVLQAQSGAASPPSPPPPGTTQAATAGP 199

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  504 KEPAPTTPKEPAPTTPKEPA-PTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPkePAPTTPKEPVPTTP---KEPA 579
Cdd:pfam03154  200 TPSAPSVPPQGSPATSQPPNqTQSTAAPHTLIQQTPTLHPQRLPSPHPPLQPMTQPP--PPSQVSPQPLPQPSlhgQMPP 277

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  580 STTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEPAPTTPK--EP 657
Cdd:pfam03154  278 MPHSLQTGPSHMQHPVPPQPFPLTPQSSQSQVPPGPSPAAPGQSQQRIHTPPSQSQLQSQQPPREQPLPPAPLSMPhiKP 357

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  658 APTTPkepapttkkpeltIPKEPVPTTPKEPAPTTPKEPAPTTTKKPELSTPKEPTSTNPKEPEPTLPKEPELTLPEEPE 737
Cdd:pfam03154  358 PPTTP-------------IPQLPNPQSHKHPPHLSGPSPFQMNSNLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQQL 424

                          410       420       430       440
                   ....*....|....*....|....*....|....*....|
gi 2002298153  738 PSNP------ETSDELIAELAEAPTPKALENNPKEPTVPT 771
Cdd:pfam03154  425 PPPPaqppvlTQSQSLPPPAASHPPTSGLHQVPSQSPFPQ 464
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 459-553 2.37e-09

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 61.75  E-value: 2.37e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  459 APTTPKEPAPTTPKEPAPNTPKePAPTTPKEPAPTTPKEpesttPKEPAPTT-PKEPAPTTPKEPAPTTPKEPAPTTPKE 537
Cdd:PRK14950   361 VPVPAPQPAKPTAAAPSPVRPT-PAPSTRPKAAAAANIP-----PKEPVRETaTPPPVPPRPVAPPVPHTPESAPKLTRA 434

                           90
                   ....*....|....*...
gi 2002298153  538 --PAPTTPKEPAPTTPKE 553
Cdd:PRK14950   435 aiPVDEKPKYTPPAPPKE 452
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 375-460 2.38e-09

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 62.22  E-value: 2.38e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  375 TTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTT 454
Cdd:PRK12270    34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAV 113


                   ....*.
gi 2002298153  455 PKEPAP 460
Cdd:PRK12270   114 EDEVTP 119
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
290-577 2.42e-09

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 61.79  E-value: 2.42e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  290 QSSASKKEKTTSAKETRSAENTSAKDVEPTSTTPKNSAPTTTKKPVTTTKEPVPTTTKGPEPTSKEPAPTTPKEPeltip 369
Cdd:PRK07003   373 PARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDA----- 447

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  370 kepapttkkPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPkepaPTTPKEPAPTTpKEPAPTTPKEPAPTTKK 449
Cdd:PRK07003   448 ---------PVPAKANARASADSRCDERDAQPPADSGSASAPASDAP----PDAAFEPAPRA-AAPSAATPAAVPDARAP 513

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  450 PEPTTPKEPAPttPKEPAPTTPkEPAPNTPKEPAPTTPKEPAPTTPKEP----ESTTPKEPAPTTPKEPAPTTPKEPAPT 525
Cdd:PRK07003   514 AAASREDAPAA--AAPPAPEAR-PPTPAAAAPAARAGGAAAALDVLRNAgmrvSSDRGARAAAAAKPAAAPAAAPKPAAP 590

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 2002298153  526 TPKEPAPtTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAP---TTPKEPVPTTPKE 577
Cdd:PRK07003   591 RVAVQVP-TPRARAATGDAPPNGAARAEQAAESRGAPPPwedIPPDDYVPLSADE 644
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 519-722 2.48e-09

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 61.48  E-value: 2.48e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  519 PKEPAPTTPKEPAPTTPKEPAPTTPKEPapTTPKEPAPTTPKEPAPTT-------PKEPVPTTPKEPASTTPKEPAPTTP 591
Cdd:PLN03209   330 PKESDAADGPKPVPTKPVTPEAPSPPIE--EEPPQPKAVVPRPLSPYTayedlkpPTSPIPTPPSSSPASSKSVDAVAKP 407

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  592 KEPAPTTPKEPAPTTP-KEPAPTTPKEPAPTTP--KEPALTTPKEPAPTPKEPEPTTPKEPA--PTTPKEPAPTT----- 661
Cdd:PLN03209   408 AEPDVVPSPGSASNVPeVEPAQVEAKKTRPLSPyaRYEDLKPPTSPSPTAPTGVSPSVSSTSsvPAVPDTAPATAatdaa 487

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2002298153  662 -PKEPAPTTKKPELTIPKEPVPTTPkEPAPTTPKEPAPTTTKKPELSTPKEPTST----NPKEPEP 722
Cdd:PLN03209   488 aPPPANMRPLSPYAVYDDLKPPTSP-SPAAPVGKVAPSSTNEVVKVGNSAPPTALadeqHHAQPKP 552
Hemopexin pfam00045
Hemopexin; Hemopexin is a heme-binding protein that transports heme to the liver. ...
 1065-1102 2.85e-09

Hemopexin; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metallopeptidases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metallopeptidases (TIMPs).


Pssm-ID: 395000 [Multi-domain]  Cd Length: 44  Bit Score: 53.72  E-value: 2.85e-09
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 2002298153 1065 IDTVFTRCNceGKTFFFKDSQYWRFTNDVMDAGYPKLI 1102
Cdd:pfam00045    1 IDAAFEDRD--GKTYFFKGRKYWRFDPQRVEPGYPKLI 36
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 555-680 2.99e-09

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 61.27  E-value: 2.99e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  555 APTTPKEPAPTTPKEPVPTTP-KEPASTTPKEPAPTTPkePAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKE 633
Cdd:PRK14951   369 AAEAAAPAEKKTPARPEAAAPaAAPVAQAAAAPAPAAA--PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVA 446

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 2002298153  634 PAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPELTIPKEP 680
Cdd:PRK14951   447 LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEE 493
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 351-484 3.07e-09

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 61.27  E-value: 3.07e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  351 PTSKEPAPTtPKEPELTIPKEPAPTTKKPAPTTPKEPAPTTPkePEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPT 430
Cdd:PRK14951   366 PAAAAEAAA-PAEKKTPARPEAAAPAAAPVAQAAAAPAPAAA--PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAP 442

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 2002298153  431 TPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPkEPAPTTPKEPAPNTPKEPAP 484
Cdd:PRK14951   443 AAVALAPAPPAQAAPETVAIPVRVAPEPAVASA-APAPAAAPAAARLTPTEEGD 495
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
471-649 3.11e-09

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 61.13  E-value: 3.11e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  471 PKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPttpkepAPTTPKEPAPTTPKEPAPTTPKEPAPTT 550
Cdd:PRK14948   363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPP------AKASPPIPVPAEPTEPSPTPPANAANAP 436

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  551 PKE-------------PAPTT-------------------------------PKEPAPTTP---------------KEPV 571
Cdd:PRK14948   437 PSLnleelwqqilaklELPSTrmllsqqaelvsldsnraviavspnwlgmvqSRKPLLEQAfakvlgrsiklnlesQSGS 516

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2002298153  572 PTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEP 649
Cdd:PRK14948   517 ASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTPSPTKDSSP 594
PRK08691 PRK08691
DNA polymerase III subunits gamma and tau; Validated
 359-556 3.49e-09

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236333 [Multi-domain]  Cd Length: 709  Bit Score: 61.26  E-value: 3.49e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  359 TTPKEPELTIPKEPApTTKKPAPTtpkePAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPT 438
Cdd:PRK08691   375 TELQSPSAQTAEKET-AAKKPQPR----PEAETAQTPVQTASAAAMPSEGKTAGPVSNQENNDVPPWEDAPDEAQTAAGT 449

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  439 TPKEPAPTTKKPEPTTPKePAPTTPKEPAPTTPKEPAPNTPKE-PAPTTP-KEPAPTTPKEPESTTPKEPAPTTPKEPAP 516
Cdd:PRK08691   450 AQTSAKSIQTASEAETPP-ENQVSKNKAADNETDAPLSEVPSEnPIQATPnDEAVETETFAHEAPAEPFYGYGFPDNDCP 528

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*
gi 2002298153  517 TTPKEPAPTTPKE-PAPTTPKEPAPTTPKEPA----PTTPKEPAP 556
Cdd:PRK08691   529 PEDGAEIPPPDWEhAAPADTAGGGADEEAEAGgiggNNTPSAPPP 573
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 466-545 3.60e-09

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 61.44  E-value: 3.60e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  466 PAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 545
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
361-556 3.81e-09

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 61.13  E-value: 3.81e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  361 PKEPELTIPKEPAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPttpkePAPTTPKEPAPTTPKEPAPTTPKEPAPTTP 440
Cdd:PRK14948   363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPP-----PAKASPPIPVPAEPTEPSPTPPANAANAPP 437

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  441 KE-------------PAPTT--------------------------------KKPEPTTPKEPAPTTPKEPAPTTPKEPA 475
Cdd:PRK14948   438 SLnleelwqqilaklELPSTrmllsqqaelvsldsnraviavspnwlgmvqsRKPLLEQAFAKVLGRSIKLNLESQSGSA 517

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  476 PNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPkepaPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPA 555
Cdd:PRK14948   518 SNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPP----PPPPTATQASSNAPAQIPADSSPPPPIPEEPTPSPTKDSS 593


                   .
gi 2002298153  556 P 556
Cdd:PRK14948   594 P 594
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 420-521 3.89e-09

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 60.98  E-value: 3.89e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  420 APTTPKEPAPTTPKEPAPTTPKePAPTTkkpePTTPKEPAPTTPKEPAPTT-PKEPAPNTPKEPAPTTPKEPAPTTPKEp 498
Cdd:PRK14950   361 VPVPAPQPAKPTAAAPSPVRPT-PAPST----RPKAAAAANIPPKEPVRETaTPPPVPPRPVAPPVPHTPESAPKLTRA- 434

                           90       100
                   ....*....|....*....|...
gi 2002298153  499 esttpKEPAPTTPKEPAPTTPKE 521
Cdd:PRK14950   435 -----AIPVDEKPKYTPPAPPKE 452
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 365-459 4.17e-09

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 60.98  E-value: 4.17e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  365 ELTIPKEPAPTTKKPAPTTPkEPAPTTPKEPEPTTPKESAPTTPKEPAPTT-PKEPAPTTPKEPAPTTPKEPAPTTPKEP 443
Cdd:PRK14950   357 EALLVPVPAPQPAKPTAAAP-SPVRPTPAPSTRPKAAAAANIPPKEPVRETaTPPPVPPRPVAPPVPHTPESAPKLTRAA 435

                           90
                   ....*....|....*.
gi 2002298153  444 APTTKKPEPTTPKEPA 459
Cdd:PRK14950   436 IPVDEKPKYTPPAPPK 451
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 372-459 4.30e-09

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 61.06  E-value: 4.30e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  372 PAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPkePAPTTKKPE 451
Cdd:PRK12270    39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAA--PAAAAVEDE 116


                   ....*...
gi 2002298153  452 PTTPKEPA 459
Cdd:PRK12270   117 VTPLRGAA 124
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 491-577 4.47e-09

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 60.59  E-value: 4.47e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  491 APTTPKEPESTTPKEPAPTTPKePAPTTPKEPAPTTPKEPAP----TTPKEPAPTTPKEPAPTTPKEPAPTTPKE--PAP 564
Cdd:PRK14950   361 VPVPAPQPAKPTAAAPSPVRPT-PAPSTRPKAAAAANIPPKEpvreTATPPPVPPRPVAPPVPHTPESAPKLTRAaiPVD 439

                           90
                   ....*....|...
gi 2002298153  565 TTPKEPVPTTPKE 577
Cdd:PRK14950   440 EKPKYTPPAPPKE 452
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 420-548 4.92e-09

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 60.50  E-value: 4.92e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  420 APTTPKEPAPTTPKEPAPTTPkEPAPTTKKPEPTTPKEPAPT-TPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEP 498
Cdd:PRK14951   369 AAEAAAPAEKKTPARPEAAAP-AAAPVAQAAAAPAPAAAPAAaASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVAL 447

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 2002298153  499 ESTTPKEPAPTTPKEPAPTTPkEPAPTTPkEPAPTTPKEPAPTTPKEPAP 548
Cdd:PRK14951   448 APAPPAQAAPETVAIPVRVAP-EPAVASA-APAPAAAPAAARLTPTEEGD 495
PHA03247 PHA03247
large tegument protein UL36; Provisional
 397-645 5.03e-09

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 61.11  E-value: 5.03e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  397 PTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTT--KKPEPTTPKEPAPTTPKEPAPTTPKE- 473
Cdd:PHA03247   247 PLRGDIAAPAPPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVwgAALAGAPLALPAPPDPPPPAPAGDAEe 326

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  474 --------------PAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPttPKEPAPTTPKEPAPTTpKEPAPTTPKEPA 539
Cdd:PHA03247   327 eddedgamevvsplPRPRQHYPLGFPKRRRPTWTPPSSLEDLSAGRHHP--KRASLPTRKRRSARHA-ATPFARGPGGDD 403

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  540 PTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTtpkepasttpkePAPTTPKEPAPttPKEPAPTTPKEPapttPKEPA 619
Cdd:PHA03247   404 QTRPAAPVPASVPTPAPTPVPASAPPPPATPLPS------------AEPGSDDGPAP--PPERQPPAPATE----PAPDD 465

                          250       260
                   ....*....|....*....|....*.
gi 2002298153  620 PTTPKEPALTTPKEPAPtpkePEPTT 645
Cdd:PHA03247   466 PDDATRKALDALRERRP----PEPPG 487
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
535-705 5.23e-09

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 60.36  E-value: 5.23e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  535 PKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPAsttpkePAPTTPKEPAPTTPKEPAPTTPKEPAPTT 614
Cdd:PRK14948   363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPP------PAKASPPIPVPAEPTEPSPTPPANAANAP 436

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  615 PKE-------------PAPTT-------------------------------PKEPAL---------------------- 628
Cdd:PRK14948   437 PSLnleelwqqilaklELPSTrmllsqqaelvsldsnraviavspnwlgmvqSRKPLLeqafakvlgrsiklnlesqsgs 516

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2002298153  629 --TTPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPELTIPKEPVPTTPKEPAPTTPKEPAPTTTKKPE 705
Cdd:PRK14948   517 asNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTPSPTKDSSPE 595
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
450-626 5.65e-09

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 60.36  E-value: 5.65e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  450 PEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKePESTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 529
Cdd:PRK14948   361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPP-PAKASPPIPVPAEPTEPSPTPPANAANAPPSL 439

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  530 -------------PAPTT-------------------------------PKEPAPTTP---------------KEPAPTT 550
Cdd:PRK14948   440 nleelwqqilaklELPSTrmllsqqaelvsldsnraviavspnwlgmvqSRKPLLEQAfakvlgrsiklnlesQSGSASN 519

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2002298153  551 PKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPkEPAPTTPKEPAPTTPKEP 626
Cdd:PRK14948   520 TAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSP-PPPIPEEPTPSPTKDSSP 594
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
537-728 5.77e-09

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 60.66  E-value: 5.77e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  537 EPAPTTPKepAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPK 616
Cdd:PRK12323   371 GAGPATAA--AAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAP 448

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  617 EPAPTTPKEPAlttpkePAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPELTIPKEPVPTTPKEPAPTTPKE- 695
Cdd:PRK12323   449 APAPAPAAAPA------AAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWv 522

                          170       180       190
                   ....*....|....*....|....*....|....*..
gi 2002298153  696 ----PAPTTTKKPELSTPKEPTSTNPKEPEPTLPKEP 728
Cdd:PRK12323   523 aesiPDPATADPDDAFETLAPAPAAAPAPRAAAATEP 559
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 426-567 5.94e-09

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 59.40  E-value: 5.94e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  426 EPAPTTPKEPAPTTPK-EPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPK 504
Cdd:NF040712   189 DPDFGRPLRPLATVPRlAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQPEDEPVGPGAAPAA 268

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2002298153  505 EPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTP---KEPAPTTP 567
Cdd:NF040712   269 EPDEATRDAGEPPAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPAPKpkrRRRRASVP 334
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 595-695 5.98e-09

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 60.21  E-value: 5.98e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  595 APTTPKEPAPTTPKEPAPTTPKePAPTTPKEPALTTPKEPAPTPKEPEpttPKEPAPTTPKEPAPTTPKEPAPTTkkpel 674
Cdd:PRK14950   361 VPVPAPQPAKPTAAAPSPVRPT-PAPSTRPKAAAAANIPPKEPVRETA---TPPPVPPRPVAPPVPHTPESAPKL----- 431

                           90       100
                   ....*....|....*....|.
gi 2002298153  675 TIPKEPVPTTPKEPAPTTPKE 695
Cdd:PRK14950   432 TRAAIPVDEKPKYTPPAPPKE 452
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
 532-653 6.05e-09

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteriztic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 55.83  E-value: 6.05e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  532 PTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPA 611
Cdd:pfam02389    8 PCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVPE 87

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 2002298153  612 PTTPKEPAPTTPKEPALTTPKEPaptpkEPEPTTPKEPAPTT 653
Cdd:pfam02389   88 PCHPKAPEPCHPKVPEPCYPKAP-----EPCQPKVPEPCPST 124
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 531-784 6.14e-09

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 60.87  E-value: 6.14e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  531 APTTPKEPAPTTPKEPAPTTPKEPAPTTPKEpAPTTPKEPVPtTPKEPASTTPKEPAPTTPkEPAPTTPKEPAPTTPKEP 610
Cdd:PRK10263   324 AAATTATQSWAAPVEPVTQTPPVASVDVPPA-QPTVAWQPVP-GPQTGEPVIAPAPEGYPQ-QSQYAQPAVQYNEPLQQP 400

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  611 APTTPKEPAPTTPKEPaltTPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPELTIPKEPVPttpkEPAP 690
Cdd:PRK10263   401 VQPQQPYYAPAAEQPA---QQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQ----QPAA 473

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  691 TTPKEPAPTTTKKPELSTPkEPtstnpkEPEPTLPKEPELTLPEEPEPSNPETSDELIAELAEAPTPkALENNPKEPTVP 770
Cdd:PRK10263   474 QEPLYQQPQPVEQQPVVEP-EP------VVEETKPARPPLYYFEEVEEKRAREREQLAAWYQPIPEP-VKEPEPIKSSLK 545

                          250
                   ....*....|....
gi 2002298153  771 TETPEVSKPEMTTA 784
Cdd:PRK10263   546 APSVAAVPPVEAAA 559
PRK08691 PRK08691
DNA polymerase III subunits gamma and tau; Validated
 451-659 6.34e-09

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236333 [Multi-domain]  Cd Length: 709  Bit Score: 60.49  E-value: 6.34e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  451 EPTTPKEPAPTTPKEPAPTtpKEPAPntpkEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEP 530
Cdd:PRK08691   373 ENTELQSPSAQTAEKETAA--KKPQP----RPEAETAQTPVQTASAAAMPSEGKTAGPVSNQENNDVPPWEDAPDEAQTA 446

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  531 APTTPKePAPTTPKEPAPTTPKePAPTTPKEPAPTTPKEPVPTTPKE-PASTTP-KEPAPTTPKEPAPTTPKEPAPTTPK 608
Cdd:PRK08691   447 AGTAQT-SAKSIQTASEAETPP-ENQVSKNKAADNETDAPLSEVPSEnPIQATPnDEAVETETFAHEAPAEPFYGYGFPD 524

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|.
gi 2002298153  609 EPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEpaPTTPKEPAP 659
Cdd:PRK08691   525 NDCPPEDGAEIPPPDWEHAAPADTAGGGADEEAEAGGIGG--NNTPSAPPP 573
rne PRK10811
ribonuclease E; Reviewed
 380-555 6.35e-09

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 60.44  E-value: 6.35e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  380 APTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTpkEPAPTTPKEPAPTTPKEPAPTTPKEP-------APTTKKPEP 452
Cdd:PRK10811   853 VQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVV--EAVAEVVEEPVVVAEPQPEEVVVVETthpeviaAPVTEQPQV 930

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  453 TTPKEP--APTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPttpkEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEP 530
Cdd:PRK10811   931 ITESDVavAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAE----PEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQV 1006

                          170       180
                   ....*....|....*....|....*..
gi 2002298153  531 APTTPKEPAPTTP--KEPAPTTPKEPA 555
Cdd:PRK10811  1007 PEATVEHNHATAPmtRAPAPEYVPEAP 1033
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 435-513 7.44e-09

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 60.29  E-value: 7.44e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2002298153  435 PAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKE 513
Cdd:PRK12270    39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 387-475 7.77e-09

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 60.29  E-value: 7.77e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  387 PAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPkePAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEP 466
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAP--PKPAAAAAAAAAPAAPPAAAAAAAPAAAAVED 115


                   ....*....
gi 2002298153  467 APTTPKEPA 475
Cdd:PRK12270   116 EVTPLRGAA 124
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 570-651 8.03e-09

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 60.29  E-value: 8.03e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  570 PVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEP 649
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117


                   ..
gi 2002298153  650 AP 651
Cdd:PRK12270   118 TP 119
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 364-481 8.49e-09

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 59.82  E-value: 8.49e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  364 PELTIPKEPAPTTKKPAPTTPKEPAPTTPKEPEPTTPKesapttpkePAPTTPKEPAPTtpkEPAPTTPKEPAPTTPKEP 443
Cdd:PRK14950   345 SYGQLPLELAVIEALLVPVPAPQPAKPTAAAPSPVRPT---------PAPSTRPKAAAA---ANIPPKEPVRETATPPPV 412

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 2002298153  444 APTTKKPEPTTPKEPAPTTPKE--PAPTTPKEPAPNTPKE 481
Cdd:PRK14950   413 PPRPVAPPVPHTPESAPKLTRAaiPVDEKPKYTPPAPPKE 452
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 579-673 8.57e-09

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 59.82  E-value: 8.57e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  579 ASTTPKEPAPTTPKEPAPTTPKePAPTTPKEPAPTtpkEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEPAPTTPKE-- 656
Cdd:PRK14950   361 VPVPAPQPAKPTAAAPSPVRPT-PAPSTRPKAAAA---ANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAai 436

                           90
                   ....*....|....*..
gi 2002298153  657 PAPTTPKEPAPTTKKPE 673
Cdd:PRK14950   437 PVDEKPKYTPPAPPKEE 453
PHA03369 PHA03369
capsid maturational protease; Provisional
 371-673 8.87e-09

capsid maturational protease; Provisional


Pssm-ID: 223061 [Multi-domain]  Cd Length: 663  Bit Score: 60.01  E-value: 8.87e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  371 EPAPTTKKPAPTTPKEPAPTTPKEPEP---TTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPtt 447
Cdd:PHA03369   346 EILKTASLTAPSRVLAAAAKVAVIAAPqthTGPADRQRPQRPDGIPYSVPARSPMTAYPPVPQFCGDPGLVSPYNPQS-- 423

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  448 kkpePTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKE-----PESTTPKEPAPTTPKEPAPTTPKEP 522
Cdd:PHA03369   424 ----PGTSYGPEPVGPVPPQPTNPYVMPISMANMVYPGHPQEHGHERKRKrggelKEELIETLKLVKKLKEEQESLAKEL 499

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  523 APTTPKEPAPTTPKEPAPTTPKEPAPTTPkEPAPTTPkEPAPTTpKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEP 602
Cdd:PHA03369   500 EATAHKSEIKKIAESEFKNAGAKTAAANI-EPNCSAD-AAAPAT-KRARPETKTELEAVVRFPYQIRNMESPAFVHSFTS 576

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  603 APTTPKE-----------PAPTTPKEPAPTTPKEPALTTPKEPaPTPKEPEPTtpkePAPTTPKEPAPTTPKEPAPTTKK 671
Cdd:PHA03369   577 TTLAAAAgqgsdtaealaGAIETLLTQASAQPAGLSLPAPAVP-VNASTPAST----PPPLAPQEPPQPGTSAPSLETSL 651


                   ..
gi 2002298153  672 PE 673
Cdd:PHA03369   652 PQ 653
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 364-442 9.20e-09

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 60.29  E-value: 9.20e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2002298153  364 PELTIPKEPAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 442
Cdd:PRK12270    39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 502-585 9.83e-09

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 59.44  E-value: 9.83e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  502 TPKEPAPTTPKEPAPTTPKePAPTTPKEPAPTTPKEPAP----TTPKEPAPTTPKEPAPTTPKEPAPTTPKE--PVPTTP 575
Cdd:PRK14950   364 PAPQPAKPTAAAPSPVRPT-PAPSTRPKAAAAANIPPKEpvreTATPPPVPPRPVAPPVPHTPESAPKLTRAaiPVDEKP 442

                           90
                   ....*....|
gi 2002298153  576 KEPASTTPKE 585
Cdd:PRK14950   443 KYTPPAPPKE 452
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 550-635 1.04e-08

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 59.90  E-value: 1.04e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  550 TPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALT 629
Cdd:PRK12270    39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVT 118


                   ....*.
gi 2002298153  630 TPKEPA 635
Cdd:PRK12270   119 PLRGAA 124
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 448-946 1.09e-08

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 59.70  E-value: 1.09e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  448 KKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEpeSTTPKE-PAPTTPKEPAPTtpKEPAPTT 526
Cdd:PTZ00449   490 KKSKKKLAPIEEEDSDKHDEPPEGPEASGLPPKAPGDKEGEEGEHEDSKE--SDEPKEgGKPGETKEGEVG--KKPGPAK 565

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  527 PKEPA--PTTPKEPA-PTTPKEPA-PTTPKEP-APTTPKEP-APTTPKEP----VPTTPKEPAS-TTPKEPAPTTpkepA 595
Cdd:PTZ00449   566 EHKPSkiPTLSKKPEfPKDPKHPKdPEEPKKPkRPRSAQRPtRPKSPKLPelldIPKSPKRPESpKSPKRPPPPQ----R 641

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  596 PTTPKEP-APTTPKEP-APTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTP-KEPAPTTPKEPAPTTPKEPAPTtkkp 672
Cdd:PTZ00449   642 PSSPERPeGPKIIKSPkPPKSPKPPFDPKFKEKFYDDYLDAAAKSKETKTTVVlDESFESILKETLPETPGTPFTT---- 717

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  673 eltipkePVPTTPKEPA-PTTPKEPaptttkkpelstPKEPTSTNPKEPEPTLPKEPELTLPEEPEpsnpetsdeliael 751
Cdd:PTZ00449   718 -------PRPLPPKLPRdEEFPFEP------------IGDPDAEQPDDIEFFTPPEEERTFFHETP-------------- 764

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  752 AEAPTPKALENNPKEPTVPTETPEvskPEmttakEKTTEKDTTQTTTTVTPKTTTETTIIPEETTEPRASTTTRITSTAQ 831
Cdd:PTZ00449   765 ADTPLPDILAEEFKEEDIHAETGE---PD-----EAMKRPDSPSEHEDKPPGDHPSLPKKRHRLDGLALSTTDLESDAGR 836

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  832 DTTSP--QMTTLKATTLAAKVTAPTEEIQSKPEETTLTTPAlEGSDASKTTLKPQKptkapkkpastkkptkapkkptsT 909
Cdd:PTZ00449   837 IAKDAsgKIVKLKRSKSFDDLTTVEEAEEMGAEARKIVVDD-DGTEADDEDTHPPE-----------------------E 892

                          490       500       510
                   ....*....|....*....|....*....|....*..
gi 2002298153  910 KKPKTPKGRKPKTTPSPLKTSTMSEQNTTPLEVMLPT 946
Cdd:PTZ00449   893 KHKSEVRRRRPPKKPSKPKKPSKPKKPKKPDSAFIPS 929
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 350-505 1.09e-08

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 59.49  E-value: 1.09e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  350 EPTSKEPAPTTPKEPELTIPKEPAPTTKKPAPTTPkEPAPTTPKEPEPTTPKESAPTTP--KEPAPTTPKEPAPTTPKEP 427
Cdd:PRK07994   371 PPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPAS-APQQAPAVPLPETTSQLLAARQQlqRAQGATKAKKSEPAAASRA 449

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2002298153  428 APTtPKEPAPTTPKEPAPTTKKPEPTtPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKE 505
Cdd:PRK07994   450 RPV-NSALERLASVRPAPSALEKAPA-KKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAAKLAAEAIERDP 525
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 534-631 1.23e-08

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 59.90  E-value: 1.23e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  534 TPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPT 613
Cdd:PRK12270    39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVT 118

                           90       100
                   ....*....|....*....|
gi 2002298153  614 TPKEPAPTTPK--EPALTTP 631
Cdd:PRK12270   119 PLRGAAAAVAKnmDASLEVP 138
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 481-623 1.39e-08

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 58.24  E-value: 1.39e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  481 EPAPTTPKEPAPTTPKE---PESTTPKEPAPTTPKEPAPTTPKEPAPT-TPKEPAPTTPKEPAPTTPKEPAPTTPKEPAP 556
Cdd:NF040712   189 DPDFGRPLRPLATVPRLarePADARPEEVEPAPAAEGAPATDSDPAEAgTPDDLASARRRRAGVEQPEDEPVGPGAAPAA 268

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  557 ttpkEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTP---KEPAPTTP 623
Cdd:NF040712   269 ----EPDEATRDAGEPPAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPAPKpkrRRRRASVP 334
PHA03379 PHA03379
EBNA-3A; Provisional
 432-701 1.46e-08

EBNA-3A; Provisional


Pssm-ID: 223066 [Multi-domain]  Cd Length: 935  Bit Score: 59.30  E-value: 1.46e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  432 PKEPAPTTPKEPAPttkKPEPTTPK------EPAPTTPKEPAPTTPKEPAP---NTPKEPAPTTPKEPAPTTPKEP---E 499
Cdd:PHA03379   408 ASEPTYGTPRPPVE---KPRPEVPQsletatSHGSAQVPEPPPVHDLEPGPlhdQHSMAPCPVAQLPPGPLQDLEPgdqL 484

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  500 STTPKEPAPTTPKEPAPTTPKepapTTPKEPAPT-TPKE-PAPTTPkEPAPTTPkEPAPTTPKE-PAPTTPKEPVPTTPK 576
Cdd:PHA03379   485 PGVVQDGRPACAPVPAPAGPI----VRPWEASLSqVPGVaFAPVMP-QPMPVEP-VPVPTVALErPVCPAPPLIAMQGPG 558

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  577 EPASTTPKE----PAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE-PAPTTPKEPALTTPKEPAPTPKEPEPTTPkEPAP 651
Cdd:PHA03379   559 ETSGIVRVRerwrPAPWTPNPPRSPSQMSVRDRLARLRAEAQPYQaSVEVQPPQLTQVSPQQPMEYPLEPEQQMF-PGSP 637

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|..
gi 2002298153  652 TTPKEPAPTTPKEPA--PTTKKPELTIPKEPVPTTPKEPAPTTPKEPAPTTT 701
Cdd:PHA03379   638 FSQVADVMRAGGVPAmqPQYFDLPLQQPISQGAPLAPLRASMGPVPPVPATQ 689
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 361-516 1.54e-08

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 59.11  E-value: 1.54e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  361 PKEPELTIPKEPAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTP 440
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK 440

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2002298153  441 KEPAPTTKkpEPTTPKEPAPTTPKEPAPTTPkEPAPNtPKEPAPTTPKEPAPTtpKEPESTTPKEPAPTTPKEPAP 516
Cdd:PRK07994   441 SEPAAASR--ARPVNSALERLASVRPAPSAL-EKAPA-KKEAYRWKATNPVEV--KKEPVATPKALKKALEHEKTP 510
rne PRK10811
ribonuclease E; Reviewed
 548-713 1.70e-08

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 59.28  E-value: 1.70e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  548 PTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTpkEPAPTTPKEPAPTTpkEPAPTTPKEPAPTTPKEPA 627
Cdd:PRK10811   846 PVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVV--EAVAEVVEEPVVVA--EPQPEEVVVVETTHPEVIA 921

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  628 LTTPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPELTIPKEPVPTTPKEPAPTTPKEPAPTTTKKPELS 707
Cdd:PRK10811   922 APVTEQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEV 1001


                   ....*.
gi 2002298153  708 TPKEPT 713
Cdd:PRK10811  1002 APAQVP 1007
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 443-537 1.73e-08

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 58.67  E-value: 1.73e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  443 PAPTTKKPeptTPKEPAPTTPKePAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPesttPKEPAPTTPKEPAPTTPKE- 521
Cdd:PRK14950   364 PAPQPAKP---TAAAPSPVRPT-PAPSTRPKAAAAANIPPKEPVRETATPPPVPPR----PVAPPVPHTPESAPKLTRAa 435

                           90
                   ....*....|....*..
gi 2002298153  522 -PAPTTPKEPAPTTPKE 537
Cdd:PRK14950   436 iPVDEKPKYTPPAPPKE 452
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
341-505 1.76e-08

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 58.82  E-value: 1.76e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  341 PVPTTTKGPEPTSKEPAPTTPKEPEltIPKEPAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPK--- 417
Cdd:PRK14948   364 FISEIANASAPANPTPAPNPSPPPA--PIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPSlnl 441

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  418 -----------EPAPT------------------------------------------------------TPKEPAPTTP 432
Cdd:PRK14948   442 eelwqqilaklELPSTrmllsqqaelvsldsnraviavspnwlgmvqsrkplleqafakvlgrsiklnleSQSGSASNTA 521

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2002298153  433 KEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKE 505
Cdd:PRK14948   522 KTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTPSPTKDSSP 594
rne PRK10811
ribonuclease E; Reviewed
 429-611 1.82e-08

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 59.28  E-value: 1.82e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  429 PTTPKEPAPTTPKEPAPTTKkPEPTTPKEPAPttpkEPAPTTPKEP----APNTPKEPAPTTpkEPAPTTPKEPESTTPK 504
Cdd:PRK10811   846 PVVRPQDVQVEEQREAEEVQ-VQPVVAEVPVA----AAVEPVVSAPvveaVAEVVEEPVVVA--EPQPEEVVVVETTHPE 918

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  505 EPAPTTPKEPAPTTPKEP--APTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPA-PTTPKEPAPTTPKEPVPTTPKEPAST 581
Cdd:PRK10811   919 VIAAPVTEQPQVITESDVavAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAePEVVAQPAAPVVAEVAAEVETVTAVE 998

                          170       180       190
                   ....*....|....*....|....*....|....*.
gi 2002298153  582 TPKEPAPTTPKE------PAPTTpKEPAPTTPKEPA 611
Cdd:PRK10811   999 PEVAPAQVPEATvehnhaTAPMT-RAPAPEYVPEAP 1033
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 510-595 1.86e-08

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 59.13  E-value: 1.86e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  510 TPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPT 589
Cdd:PRK12270    39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVT 118


                   ....*.
gi 2002298153  590 TPKEPA 595
Cdd:PRK12270   119 PLRGAA 124
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 443-521 1.90e-08

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 59.13  E-value: 1.90e-08
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2002298153  443 PAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKE 521
Cdd:PRK12270    39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
PHA03247 PHA03247
large tegument protein UL36; Provisional
 356-606 1.95e-08

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 59.18  E-value: 1.95e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  356 PAPTTPKEPELTIPKEPAPTTKKPAPTtPKEPAPTTPKEPEPTTPKESAPTTPkePAPTTPKEPAPTTPKEPAPTTPKEP 435
Cdd:PHA03247   255 PAPPPVVGEGADRAPETARGATGPPPP-PEAAAPNGAAAPPDGVWGAALAGAP--LALPAPPDPPPPAPAGDAEEEDDED 331

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  436 APTTPKEPAPTTKKPEPTT-PKEPAPT-TPKEP------APTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPA 507
Cdd:PHA03247   332 GAMEVVSPLPRPRQHYPLGfPKRRRPTwTPPSSledlsaGRHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPV 411

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  508 PTTPKEPAPTTPKEPAPTTPKEPAPTtpkePAPTTPKEPAPttPKEPAPTTPKEPapttPKEPVPTTPKEPASTTPKEPA 587
Cdd:PHA03247   412 PASVPTPAPTPVPASAPPPPATPLPS----AEPGSDDGPAP--PPERQPPAPATE----PAPDDPDDATRKALDALRERR 481

                          250
                   ....*....|....*....
gi 2002298153  588 PTTPKEPAPTTPKEPAPTT 606
Cdd:PHA03247   482 PPEPPGADLAELLGRHPDT 500
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 478-563 2.05e-08

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 59.13  E-value: 2.05e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  478 TPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPT 557
Cdd:PRK12270    39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVT 118


                   ....*.
gi 2002298153  558 TPKEPA 563
Cdd:PRK12270   119 PLRGAA 124
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 437-523 2.39e-08

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 58.75  E-value: 2.39e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  437 PTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAP 516
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117


                   ....*..
gi 2002298153  517 TTPKEPA 523
Cdd:PRK12270   118 TPLRGAA 124
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 518-603 2.79e-08

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 58.36  E-value: 2.79e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  518 TPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPT 597
Cdd:PRK12270    39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVT 118


                   ....*.
gi 2002298153  598 TPKEPA 603
Cdd:PRK12270   119 PLRGAA 124
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
588-784 2.79e-08

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 58.35  E-value: 2.79e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  588 PTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTT------PKEPAPTTPKEPAPTT 661
Cdd:PRK12323   375 ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEAlaaarqASARGPGGAPAPAPAP 454

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  662 PKEPAPTTKKPELTIPKEPVPTTPKEPAPTTPKEPAPTTTKKPEL-STPKEPTSTNPKEPEPTLPKEPELTLPEEPEPSN 740
Cdd:PRK12323   455 AAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWeELPPEFASPAPAQPDAAPAGWVAESIPDPATADP 534

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....
gi 2002298153  741 PETSDELIAELAEAPTPKAleNNPKEPTVPTETPEVSKPEMTTA 784
Cdd:PRK12323   535 DDAFETLAPAPAAAPAPRA--AAATEPVVAPRPPRASASGLPDM 576
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
511-690 2.85e-08

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 58.05  E-value: 2.85e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  511 PKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPkePAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTT 590
Cdd:PRK14948   363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATT--PSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPSLN 440

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  591 PKE---------PAPTT-------------------------------PKEPAPT----------------TPKEPAPTT 614
Cdd:PRK14948   441 LEElwqqilaklELPSTrmllsqqaelvsldsnraviavspnwlgmvqSRKPLLEqafakvlgrsiklnleSQSGSASNT 520

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2002298153  615 PKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPelTIPKEPVPTTPKEPAP 690
Cdd:PRK14948   521 AKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPP--PIPEEPTPSPTKDSSP 594
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 403-491 2.93e-08

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 58.36  E-value: 2.93e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  403 SAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTkkPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEP 482
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAA--PPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVED 115


                   ....*....
gi 2002298153  483 APTTPKEPA 491
Cdd:PRK12270   116 EVTPLRGAA 124
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 578-706 3.01e-08

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 58.19  E-value: 3.01e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  578 PASTTPkEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEPAPTTPKEP 657
Cdd:PRK14951   366 PAAAAE-AAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAA 444

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*....
gi 2002298153  658 APTTPKEPAPTTKKPELTIPKEPVPTTPKEPAPTTPKEPAPTTTKKPEL 706
Cdd:PRK14951   445 VALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEE 493
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 450-591 3.51e-08

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 57.08  E-value: 3.51e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  450 PEPTTPKEPAPTTPKE---PAPTTPKEPAPNTPKEPAPTTPKEPAPT-TPKEPESTTPKEPAPTTPKEPAPTTPKEPAPt 525
Cdd:NF040712   190 PDFGRPLRPLATVPRLarePADARPEEVEPAPAAEGAPATDSDPAEAgTPDDLASARRRRAGVEQPEDEPVGPGAAPAA- 268

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2002298153  526 tpkEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPA-PTTPKEPVPTTPKEPASTTPKEPA--PTTP 591
Cdd:NF040712   269 ---EPDEATRDAGEPPAPGAAETPEAAEPPAPAPAAPAaPAAPEAEEPARPEPPPAPKPKRRRrrASVP 334
PHA03378 PHA03378
EBNA-3B; Provisional
 356-638 3.66e-08

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 58.15  E-value: 3.66e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  356 PAPTTPKEPELTIPKEPAPTTKKPAPTTPKePAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEP 435
Cdd:PHA03378   673 PYQPSPTGANTMLPIQWAPGTMQPPPRAPT-PMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAP 751

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  436 APTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPApntpKEPAPTTPKEPAPTtpkepeSTTPKEPAPTTPKEPA 515
Cdd:PHA03378   752 GRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRPR----GAPTPQPPPQAGPT------SMQLMPRAAPGQQGPT 821

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  516 PTTPKEPAPTTPKEPAPTTpKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPA 595
Cdd:PHA03378   822 KQILRQLLTGGVKRGRPSL-KKPAALERQAAAGPTPSPGSGTSDKIVQAPVFYPPVLQPIQVMRQLGSVRAAAASTVTQA 900

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....
gi 2002298153  596 PTT-PKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTP 638
Cdd:PHA03378   901 PTEyTGERRGVGPMHPTDIPPSKRAKTDAYVESQPPHGGQSHSF 944
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
 491-662 4.50e-08

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 57.30  E-value: 4.50e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  491 APTTPKEPESTTPKEPAPTTPKEPAPTTPKEPA-PTTPKEPAPTTPKEPA-PTTPKEPAPTTPKEPAPTTPKEPAPTTPK 568
Cdd:PRK13108   275 APKGREAPGALRGSEYVVDEALEREPAELAAAAvASAASAVGPVGPGEPNqPDDVAEAVKAEVAEVTDEVAAESVVQVAD 354

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  569 EPVPTTPkepASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKE 648
Cdd:PRK13108   355 RDGESTP---AVEETSEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAKPDE 431

                          170
                   ....*....|....
gi 2002298153  649 PAPTTPkEPAPTTP 662
Cdd:PRK13108   432 LAVAGP-GDDPAEP 444
PRK08691 PRK08691
DNA polymerase III subunits gamma and tau; Validated
 428-643 4.58e-08

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236333 [Multi-domain]  Cd Length: 709  Bit Score: 57.41  E-value: 4.58e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  428 APTTPKEPAPTTPKEPAPTTKKPE-PTTPKEPAPTTPKEPAPTTPKEPApntpKEPAPTTPKEPAPTTPKEPESTTPKEP 506
Cdd:PRK08691   363 AASCDANAVIENTELQSPSAQTAEkETAAKKPQPRPEAETAQTPVQTAS----AAAMPSEGKTAGPVSNQENNDVPPWED 438

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  507 APTTPKEPAPTTPKePAPTTPKEPAPTTPKePAPTTPKEPAPTTPKEPAPTTPKE-PAPTTP-KEPVPTTPKEPASTTPK 584
Cdd:PRK08691   439 APDEAQTAAGTAQT-SAKSIQTASEAETPP-ENQVSKNKAADNETDAPLSEVPSEnPIQATPnDEAVETETFAHEAPAEP 516

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 2002298153  585 EPAPTTPKEPAPTTPKEPAPTTPKEPAptTPKEPAPTTPKEPALTTPKEPAPTPKEPEP 643
Cdd:PRK08691   517 FYGYGFPDNDCPPEDGAEIPPPDWEHA--APADTAGGGADEEAEAGGIGGNNTPSAPPP 573
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 483-883 4.85e-08

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 57.87  E-value: 4.85e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  483 APTTPKEPAPTTPKEPESTTPKEPAPTTpkEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEP 562
Cdd:PHA03307    24 PPATPGDAADDLLSGSQGQLVSDSAELA--AVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPA 101

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  563 APTTPKEPVPTTPKEPASTT-PKEPAPTTP---KEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTP 638
Cdd:PHA03307   102 REGSPTPPGPSSPDPPPPTPpPASPPPSPApdlSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEE 181

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  639 KEPEPTTPKEPAPTtpkEPAPTTPKEPAPTTKKPELTIPKEPVPTTPKEPAptTPKEPAPTTTKKPELSTPKE-PTSTNP 717
Cdd:PHA03307   182 TARAPSSPPAEPPP---STPPAAASPRPPRRSSPISASASSPAPAPGRSAA--DDAGASSSDSSSSESSGCGWgPENECP 256

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  718 KEPEPTLPKEPELTLPEEPEPSNPETSDELIAELAEAPTPKALENNPKEPTVPTETPEVSK----PEMTTAKEKTTEKDT 793
Cdd:PHA03307   257 LPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSssssRESSSSSTSSSSESS 336

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  794 TQTTTTVTPKTTTETTIIPEETTEPRASTTTRITSTAQDTTSPQMTTLKATTLAAKVTAPTEEIQSKPEETTLTTPALEG 873
Cdd:PHA03307   337 RGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSP 416

                          410
                   ....*....|
gi 2002298153  874 SDASKTTLKP 883
Cdd:PHA03307   417 LDAGAASGAF 426
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 375-721 4.93e-08

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 57.28  E-value: 4.93e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  375 TTKKPAPTTPKEPAPTTPKEPEPT--TPKESAPTTPKEPAPTTPKEPAPTTPKepAPTTPKEPAPTTPKEPAPTTKKPEP 452
Cdd:pfam17823   83 STEVTAEHTPHGTDLSEPATREGAadGAASRALAAAASSSPSSAAQSLPAAIA--ALPSEAFSAPRAAACRANASAAPRA 160

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  453 TTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAP 532
Cdd:pfam17823  161 AIAAASAPHAASPAPRTAASSTTAASSTTAASSAPTTAASSAPATLTPARGISTAATATGHPAAGTALAAVGNSSPAAGT 240

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  533 TTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKE-PASTTPKEPAPTTPKEPAPTTPKepapTTPKEPA 611
Cdd:pfam17823  241 VTAAVGTVTPAALATLAAAAGTVASAAGTINMGDPHARRLSPAKHmPSDTMARNPAAPMGAQAQGPIIQ----VSTDQPV 316

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  612 PTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPELTIPKEPVPTTPKEPAPT 691
Cdd:pfam17823  317 HNTAGEPTPSPSNTTLEPNTPKSVASTNLAVVTTTKAQAKEPSASPVPVLHTSMIPEVEATSPTTQPSPLLPTQGAAGPG 396

                          330       340       350
                   ....*....|....*....|....*....|
gi 2002298153  692 TPKEPAPTTTKKPELSTPKEPTSTNPKEPE 721
Cdd:pfam17823  397 ILLAPEQVATEATAGTASAGPTPRSSGDPK 426
PRK08691 PRK08691
DNA polymerase III subunits gamma and tau; Validated
 406-604 5.43e-08

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236333 [Multi-domain]  Cd Length: 709  Bit Score: 57.41  E-value: 5.43e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  406 TTPKEPAPTTPKEPAPTtpKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKepaPTTPKEPAPTTPKEPAPNTPKEPAPT 485
Cdd:PRK08691   375 TELQSPSAQTAEKETAA--KKPQPRPEAETAQTPVQTASAAAMPSEGKTAG---PVSNQENNDVPPWEDAPDEAQTAAGT 449

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  486 TPKePAPTTPKEPESTTPKePAPTTPKEPAPTTPKEPAPTTPKE-PAPTTP-KEPAPTTPKEPAPTTPKEPAPTTPKEPA 563
Cdd:PRK08691   450 AQT-SAKSIQTASEAETPP-ENQVSKNKAADNETDAPLSEVPSEnPIQATPnDEAVETETFAHEAPAEPFYGYGFPDNDC 527

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*...
gi 2002298153  564 PTTPKEPVPTTPKEPASttPKEPAPTTPKEPA-------PTTPKEPAP 604
Cdd:PRK08691   528 PPEDGAEIPPPDWEHAA--PADTAGGGADEEAeaggiggNNTPSAPPP 573
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 558-638 5.53e-08

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 57.59  E-value: 5.53e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  558 TPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPT 637
Cdd:PRK12270    39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVT 118


                   .
gi 2002298153  638 P 638
Cdd:PRK12270   119 P 119
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 526-611 6.12e-08

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 57.59  E-value: 6.12e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  526 TPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPT 605
Cdd:PRK12270    39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVT 118


                   ....*.
gi 2002298153  606 TPKEPA 611
Cdd:PRK12270   119 PLRGAA 124
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 407-551 6.18e-08

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 56.31  E-value: 6.18e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  407 TPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPtt 486
Cdd:NF040712   191 DFGRPLRPLATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQPEDEPVGPGAAPAA-- 268

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2002298153  487 pkEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTP---KEPAPTTP 551
Cdd:NF040712   269 --EPDEATRDAGEPPAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPAPKpkrRRRRASVP 334
PHA03369 PHA03369
capsid maturational protease; Provisional
 402-708 6.71e-08

capsid maturational protease; Provisional


Pssm-ID: 223061 [Multi-domain]  Cd Length: 663  Bit Score: 56.93  E-value: 6.71e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  402 ESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPkepaPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKE 481
Cdd:PHA03369   345 NEILKTASLTAPSRVLAAAAKVAVIAAPQTHTGPADRQR----PQRPDGIPYSVPARSPMTAYPPVPQFCGDPGLVSPYN 420

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  482 P-APTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPT-----TPKEPAPTTPKEPA 555
Cdd:PHA03369   421 PqSPGTSYGPEPVGPVPPQPTNPYVMPISMANMVYPGHPQEHGHERKRKRGGELKEELIETlklvkKLKEEQESLAKELE 500

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  556 PTTPKEPAPTTPKEPVPTTPKEPASTTPkEPAPTTPkEPAPTTpKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPA 635
Cdd:PHA03369   501 ATAHKSEIKKIAESEFKNAGAKTAAANI-EPNCSAD-AAAPAT-KRARPETKTELEAVVRFPYQIRNMESPAFVHSFTST 577

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2002298153  636 PTP-KEPEPTTPKEPAPTTPKEPAPTTPKEPAPttkkPELTIPKEPV-PTTPKE-PAPTTPKEPAPTTTKKPELST 708
Cdd:PHA03369   578 TLAaAAGQGSDTAEALAGAIETLLTQASAQPAG----LSLPAPAVPVnASTPAStPPPLAPQEPPQPGTSAPSLET 649
PHA03247 PHA03247
large tegument protein UL36; Provisional
 459-706 7.32e-08

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 57.26  E-value: 7.32e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  459 APTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPkePAPTTPKEPAPTTPKEPAPTTPKEP 538
Cdd:PHA03247   254 APAPPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVWGAALAGAP--LALPAPPDPPPPAPAGDAEEEDDED 331

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  539 APTTPKEPAPTTPKEPAPTTPKEPAPT-TPkePVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 617
Cdd:PHA03247   332 GAMEVVSPLPRPRQHYPLGFPKRRRPTwTP--PSSLEDLSAGRHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAA 409

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  618 PAPTTPKEPALTtpkePAPTPKEPEPTTPKePAPTTPKEPAPTTPKEPAPTTKKPELTIPKEPVPTTPKEPAPTTPKEPA 697
Cdd:PHA03247   410 PVPASVPTPAPT----PVPASAPPPPATPL-PSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDATRKALDALRERRPPE 484


                   ....*....
gi 2002298153  698 PTTTKKPEL 706
Cdd:PHA03247   485 PPGADLAEL 493
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 348-476 7.40e-08

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 56.65  E-value: 7.40e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  348 GPEPTSKEPAPTTPKEPELTIPKEPAPTTKKPAPTTPkePAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEP 427
Cdd:PRK14951   370 AEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAA--PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVAL 447

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*....
gi 2002298153  428 APTTPKEPAPTTPKEPAPTTKKPEPTTPkEPAPTTPKEPAPTTPKEPAP 476
Cdd:PRK14951   448 APAPPAQAAPETVAIPVRVAPEPAVASA-APAPAAAPAAARLTPTEEGD 495
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 505-639 7.44e-08

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 55.93  E-value: 7.44e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  505 EPAPTTPKEPAPTTPKE---PAPTTPKEPAPTTPKEPAPTTPKEPAPT-TPKEPAPTTPKEPAPTTPKEPVPTTPKEPAS 580
Cdd:NF040712   189 DPDFGRPLRPLATVPRLarePADARPEEVEPAPAAEGAPATDSDPAEAgTPDDLASARRRRAGVEQPEDEPVGPGAAPAA 268

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 2002298153  581 ttpkEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPK 639
Cdd:NF040712   269 ----EPDEATRDAGEPPAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPAPK 323
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 462-547 7.69e-08

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 57.21  E-value: 7.69e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  462 TPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPT 541
Cdd:PRK12270    39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVT 118


                   ....*.
gi 2002298153  542 TPKEPA 547
Cdd:PRK12270   119 PLRGAA 124
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 357-442 8.58e-08

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 56.36  E-value: 8.58e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  357 APTTPKEPELTIPKEPAPTTKKPAPTTP---KEPAPTTPKEPEPTT-PKESAPTTPKEPAPTTPKEPAPTTPKE--PAPT 430
Cdd:PRK14950   361 VPVPAPQPAKPTAAAPSPVRPTPAPSTRpkaAAAANIPPKEPVRETaTPPPVPPRPVAPPVPHTPESAPKLTRAaiPVDE 440

                           90
                   ....*....|..
gi 2002298153  431 TPKEPAPTTPKE 442
Cdd:PRK14950   441 KPKYTPPAPPKE 452
PRK10905 PRK10905
cell division protein DamX; Validated
 347-547 8.72e-08

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 55.71  E-value: 8.72e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  347 KGPEPTSKEPAPTTPKEPELTIPKEPAPTTKKPAP-TTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKE------- 418
Cdd:PRK10905    21 KAPSTSSSDQTASGEKSIDLAGNATDQANGVQPAPgTTSAEQTAGNTQQDVSLPPISSTPTQGQTPVATDGQQrvevqgd 100

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  419 --PAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKE--PAPNTPKEP--APTTPKEPAP 492
Cdd:PRK10905   101 lnNALTQPQNQQQLNNVAVNSTLPTEPATVAPVRNGNASRQTAKTQTAERPATTRPArkQAVIEPKKPqaTAKTEPKPVA 180

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 2002298153  493 TTPKEPESTTPKEPAPTtpkePAPTTPKEPAPTTPKEPAPTTpkEPAPTTPKEPA 547
Cdd:PRK10905   181 QTPKRTEPAAPVASTKA----PAATSTPAPKETATTAPVQTA--SPAQTTATPAA 229
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 555-650 8.73e-08

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 56.36  E-value: 8.73e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  555 APTTPKEPAPTTPKEPVPTTPKePASTTPKEPAPTTPKEPAPTTPKepapTTPKEPAPTTPKEPAPTTPKEPALTTPKEP 634
Cdd:PRK14950   361 VPVPAPQPAKPTAAAPSPVRPT-PAPSTRPKAAAAANIPPKEPVRE----TATPPPVPPRPVAPPVPHTPESAPKLTRAA 435

                           90
                   ....*....|....*.
gi 2002298153  635 APTPKEPEPTTPKEPA 650
Cdd:PRK14950   436 IPVDEKPKYTPPAPPK 451
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 363-519 9.20e-08

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 55.54  E-value: 9.20e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  363 EPELTIPKEPAPTTKKPAPttpkEPAPTTPKEPEPTTPKESAPTTPKEPAPT-TPKEPAPTTPKEPAPTTPKEPAPTTPK 441
Cdd:NF040712   189 DPDFGRPLRPLATVPRLAR----EPADARPEEVEPAPAAEGAPATDSDPAEAgTPDDLASARRRRAGVEQPEDEPVGPGA 264

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  442 EPAPttkkpepttpkEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTP---KEPAPTT 518
Cdd:NF040712   265 APAA-----------EPDEATRDAGEPPAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPAPKpkrRRRRASV 333


                   .
gi 2002298153  519 P 519
Cdd:NF040712   334 P 334
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 309-558 9.30e-08

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 56.32  E-value: 9.30e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  309 ENTSAKDVEPTSTTPKNSAPTTTKKPVTTTKEPVPTTTKGPEPTSKEPAPTTPKEPELTIPKEPAPTTKKPAPTTPKEPA 388
Cdd:NF033839   281 QDTPKEPGNKKPSAPKPGMQPSPQPEKKEVKPEPETPKPEVKPQLEKPKPEVKPQPEKPKPEVKPQLETPKPEVKPQPEK 360

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  389 PTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPK-EPAPTTPKEPAPTTPKEPAPTTkKPEPTTPKEPAPTTPKEPA 467
Cdd:NF033839   361 PKPEVKPQPEKPKPEVKPQPETPKPEVKPQPEKPKPEvKPQPEKPKPEVKPQPEKPKPEV-KPQPEKPKPEVKPQPEKPK 439

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  468 PTTpkEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPK-EPAPTTPK-EPAPTTPKEPAPTTPKEPAPTTPKEPAPTTpKE 545
Cdd:NF033839   440 PEV--KPQPEKPKPEVKPQPETPKPEVKPQPEKPKPEvKPQPEKPKpDNSKPQADDKKPSTPNNLSKDKQPSNQAST-NE 516

                          250
                   ....*....|...
gi 2002298153  546 PAPTTPKEPAPTT 558
Cdd:NF033839   517 KATNKPKKSLPST 529
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 587-712 1.09e-07

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 56.26  E-value: 1.09e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  587 APTTPKEPAPTTPKEPAPTTP-KEPAPTTPKEPAPTTPkEPALTTPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEP 665
Cdd:PRK14951   369 AAEAAAPAEKKTPARPEAAAPaAAPVAQAAAAPAPAAA-PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVAL 447

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 2002298153  666 APTTKKPELTIPKEPVPTTPKEPAPTTPkEPAPTTTKKPELSTPKEP 712
Cdd:PRK14951   448 APAPPAQAAPETVAIPVRVAPEPAVASA-APAPAAAPAAARLTPTEE 493
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 427-515 1.13e-07

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 56.44  E-value: 1.13e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  427 PAPTTPKEPAPTTPKEPAPTTKKPEPTTPkePAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEP 506
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKA--PAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVED 115


                   ....*....
gi 2002298153  507 APTTPKEPA 515
Cdd:PRK12270   116 EVTPLRGAA 124
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 507-640 1.13e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 56.53  E-value: 1.13e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  507 APTTPKEPAPTTPKEPAPTTPKEPAPTtPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPvptTPKEPASTTPKEP 586
Cdd:PRK07764   385 LGVAGGAGAPAAAAPSAAAAAPAAAPA-PAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGN---APAGGAPSPPPAA 460

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 2002298153  587 APTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKE 640
Cdd:PRK07764   461 APSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLRE 514
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 572-658 1.14e-07

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 56.44  E-value: 1.14e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  572 PTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEPAP 651
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117


                   ....*..
gi 2002298153  652 TTPKEPA 658
Cdd:PRK12270   118 TPLRGAA 124
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 563-690 1.21e-07

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 56.26  E-value: 1.21e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  563 APTTPKEPVPTTPKEPASTTP-KEPAPTTPKEPAPTTPkePAPTTPKEPAPTTPKEPAPTTPKEPALTTPK-EPAPTPKE 640
Cdd:PRK14951   369 AAEAAAPAEKKTPARPEAAAPaAAPVAQAAAAPAPAAA--PAAAASAPAAPPAAAPPAPVAAPAAAAPAAApAAAPAAVA 446

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 2002298153  641 PEPTTPKEPAPTTPKEPAPTTPkEPAPTTKKPELTIPKEPVPTTPKEPAP 690
Cdd:PRK14951   447 LAPAPPAQAAPETVAIPVRVAP-EPAVASAAPAPAAAPAAARLTPTEEGD 495
PHA03247 PHA03247
large tegument protein UL36; Provisional
 531-728 1.46e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 56.49  E-value: 1.46e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  531 APTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPkePAPTTPKEPAPTTPKEPAPTTPKEP 610
Cdd:PHA03247   254 APAPPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVWGAALAGAP--LALPAPPDPPPPAPAGDAEEEDDED 331

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  611 APTTPKEPAPTTPKEPALTTPKEPAPTPKEP---------EPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPELTIPKEPV 681
Cdd:PHA03247   332 GAMEVVSPLPRPRQHYPLGFPKRRRPTWTPPssledlsagRHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPV 411

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*..
gi 2002298153  682 PTTPKEPAPTTPKEPAPTTTKKPeLSTPKEPTSTNPKEPEPTLPKEP 728
Cdd:PHA03247   412 PASVPTPAPTPVPASAPPPPATP-LPSAEPGSDDGPAPPPERQPPAP 457
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 378-516 1.53e-07

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 55.88  E-value: 1.53e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  378 KP--APTTPKEPAPTTPKEPEPTTPKESAPttpkePAPTTPKEPAPTTPKE-PAPTTPKEPAPTTPKEPAPttkkPEPTT 454
Cdd:PRK14951   365 KPaaAAEAAAPAEKKTPARPEAAAPAAAPV-----AQAAAAPAPAAAPAAAaSAPAAPPAAAPPAPVAAPA----AAAPA 435

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2002298153  455 PKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPkEPAPTTPKEPESTTPkEPAPTTPKEPAP 516
Cdd:PRK14951   436 AAPAAAPAAVALAPAPPAQAAPETVAIPVRVAP-EPAVASAAPAPAAAP-AAARLTPTEEGD 495
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 611-705 1.58e-07

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 55.59  E-value: 1.58e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  611 APTTPKEPAPTTPKEPAlttPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPELTIPKEPVPTTPKE--P 688
Cdd:PRK14950   361 VPVPAPQPAKPTAAAPS---PVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAaiP 437

                           90
                   ....*....|....*..
gi 2002298153  689 APTTPKEPAPTTTKKPE 705
Cdd:PRK14950   438 VDEKPKYTPPAPPKEEE 454
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 473-615 1.66e-07

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 54.77  E-value: 1.66e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  473 EPAPNTPKEPAPTTPKE---PAPTTPKEPESTTPKEPAPTTPKEPAPT-TPKEPAPTTPKEPAPTTPKEPAPTTPKEPAP 548
Cdd:NF040712   189 DPDFGRPLRPLATVPRLarePADARPEEVEPAPAAEGAPATDSDPAEAgTPDDLASARRRRAGVEQPEDEPVGPGAAPAA 268

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  549 ttpkEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTP---KEPAPTTP 615
Cdd:NF040712   269 ----EPDEATRDAGEPPAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPAPKpkrRRRRASVP 334
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
 412-591 1.69e-07

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 55.37  E-value: 1.69e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  412 APTTPKEPAPTTPKEPAPTTPKEPapttpkEPAPTTKKPEPTTPKEPAPTTPKEPA-PTTPKEPAPNTPKEPAPTTPKEP 490
Cdd:PRK13108   275 APKGREAPGALRGSEYVVDEALER------EPAELAAAAVASAASAVGPVGPGEPNqPDDVAEAVKAEVAEVTDEVAAES 348

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  491 APTTPKEPESTTPK--EPAPTTPKEPAPTTPKEPAPTTPKEPApttpkEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPK 568
Cdd:PRK13108   349 VVQVADRDGESTPAveETSEADIEREQPGDLAGQAPAAHQVDA-----EAASAAPEEPAALASEAHDETEPEVPEKAAPI 423

                          170       180
                   ....*....|....*....|...
gi 2002298153  569 ePVPTTPKEPASTTPkEPAPTTP 591
Cdd:PRK13108   424 -PDPAKPDELAVAGP-GDDPAEP 444
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 521-662 1.69e-07

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 54.77  E-value: 1.69e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  521 EPAPTTPKEPAPTTPKE---PAPTTPKEPAPTTPKEPAPTTPKEPAPT-TPKEPVPTTPKEPASTTPKEPAPTTPKEPAP 596
Cdd:NF040712   189 DPDFGRPLRPLATVPRLarePADARPEEVEPAPAAEGAPATDSDPAEAgTPDDLASARRRRAGVEQPEDEPVGPGAAPAA 268

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  597 ttpkEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPT--PKEPEPTTPKEPAPTTPKEPA--PTTP 662
Cdd:NF040712   269 ----EPDEATRDAGEPPAPGAAETPEAAEPPAPAPAAPAAPaaPEAEEPARPEPPPAPKPKRRRrrASVP 334
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 345-436 1.72e-07

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 56.05  E-value: 1.72e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  345 TTKGPEPTSKEPAPTTPKEPELTIPKEPAPTTKKPAPTTPKEPAPTTPKEPEPtTPKESAPTTPKEPAPTTPKEPAPTTP 424
Cdd:PRK12270    34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKP-AAAAAAAAAPAAPPAAAAAAAPAAAA 112

                           90
                   ....*....|..
gi 2002298153  425 KEPAPTTPKEPA 436
Cdd:PRK12270   113 VEDEVTPLRGAA 124
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 443-531 1.95e-07

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 55.67  E-value: 1.95e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  443 PAPTTKKPEPTTPKEPAPTTPKEPAPTTPkePAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEP 522
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKA--PAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVED 115


                   ....*....
gi 2002298153  523 APTTPKEPA 531
Cdd:PRK12270   116 EVTPLRGAA 124
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 457-599 1.99e-07

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 54.77  E-value: 1.99e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  457 EPAPTTPKEPAPTTPKE---PAPNTPKEPAPTTPKEPAPTTPKEPEST-TPKEPAPTTPKEPAPTTPKEPAPTTPKEPAP 532
Cdd:NF040712   189 DPDFGRPLRPLATVPRLarePADARPEEVEPAPAAEGAPATDSDPAEAgTPDDLASARRRRAGVEQPEDEPVGPGAAPAA 268

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  533 ttpkEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTP---KEPAPTTP 599
Cdd:NF040712   269 ----EPDEATRDAGEPPAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPAPKpkrRRRRASVP 334
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 602-682 2.35e-07

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 55.67  E-value: 2.35e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  602 PAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAP-TPKEPEPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPELTIPKEP 680
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPaPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117


                   ..
gi 2002298153  681 VP 682
Cdd:PRK12270   118 TP 119
rne PRK10811
ribonuclease E; Reviewed
 564-723 2.40e-07

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 55.43  E-value: 2.40e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  564 PTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTpkEPAPTTPKEPAPTTPKEPALTTPKEpAPTPKEPEP 643
Cdd:PRK10811   846 PVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVV--EAVAEVVEEPVVVAEPQPEEVVVVE-TTHPEVIAA 922

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  644 TTPKEPAPTTPKEP--APTTPKEPAPTTKKPELTIPKEPVPTTPKEPA--PTTPKEPAPTTTKKPELSTPKEPTSTNPKE 719
Cdd:PRK10811   923 PVTEQPQVITESDVavAQEVAEHAEPVVEPQDETADIEEAAETAEVVVaePEVVAQPAAPVVAEVAAEVETVTAVEPEVA 1002


                   ....
gi 2002298153  720 PEPT 723
Cdd:PRK10811  1003 PAQV 1006
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
 583-692 2.46e-07

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteriztic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 51.21  E-value: 2.46e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  583 PKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAP-TPKEPEPTTPKEPAPTTPKEPAPTT 661
Cdd:pfam02389   11 PPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPcCPKVPEPCYPKVPEPCSPKVPEPCH 90

                           90       100       110
                   ....*....|....*....|....*....|....
gi 2002298153  662 PKEPAPTTKK-PELTIPKEPVPTTPK--EPAPTT 692
Cdd:pfam02389   91 PKAPEPCHPKvPEPCYPKAPEPCQPKvpEPCPST 124
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 369-449 2.71e-07

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 55.28  E-value: 2.71e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  369 PKEPAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTK 448
Cdd:PRK12270    39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVT 118


                   .
gi 2002298153  449 K 449
Cdd:PRK12270   119 P 119
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 315-426 2.87e-07

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 54.82  E-value: 2.87e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  315 DVEPTSTTPKNSAPTTTKKPVTTTKEPVPTTTKGPEPTSKEPAPTTPKEPELTIPKEPAPTTKKPApttPKEPAPTTPKE 394
Cdd:PRK14950   342 RTTSYGQLPLELAVIEALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETA---TPPPVPPRPVA 418

                           90       100       110
                   ....*....|....*....|....*....|....
gi 2002298153  395 PEPTTPKESAPTTPKE--PAPTTPKEPAPTTPKE 426
Cdd:PRK14950   419 PPVPHTPESAPKLTRAaiPVDEKPKYTPPAPPKE 452
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 594-753 3.13e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 54.87  E-value: 3.13e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  594 PAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEPAPTTP--KEPAPTTPKEPAPTTKK 671
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQllAARQQLQRAQGATKAKK 440

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  672 PEltiPKEPVPTTPKEPAPTTPKEPAPTTTKKPELSTPKEPTSTNPKEPEPTlPKEPELTLPEEPEPSNPETSDELIAEL 751
Cdd:PRK07994   441 SE---PAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEV-KKEPVATPKALKKALEHEKTPELAAKL 516


                   ..
gi 2002298153  752 AE 753
Cdd:PRK07994   517 AA 518
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 340-468 3.42e-07

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 54.72  E-value: 3.42e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  340 EPVPTTTKGP-EPTSKEPAPTTPKEPELTIPKEPAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKE 418
Cdd:PRK14951   372 AAAPAEKKTPaRPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAP 451

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 2002298153  419 PAPTTPKEPAPTTPKEPapttpkEPAPTTKKPEPTTPKEPAPTTPKEPAP 468
Cdd:PRK14951   452 PAQAAPETVAIPVRVAP------EPAVASAAPAPAAAPAAARLTPTEEGD 495
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 400-481 3.74e-07

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 54.90  E-value: 3.74e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  400 PKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPttPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTP 479
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPP--AAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVED 115


                   ..
gi 2002298153  480 KE 481
Cdd:PRK12270   116 EV 117
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 352-444 4.00e-07

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 54.90  E-value: 4.00e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  352 TSKEPAPTTPKEPELTIPKEPAPTTKKPAPTTPkePAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTT 431
Cdd:PRK12270    34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKA--PAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAA 111

                           90
                   ....*....|...
gi 2002298153  432 PKEPAPTTPKEPA 444
Cdd:PRK12270   112 AVEDEVTPLRGAA 124
rne PRK10811
ribonuclease E; Reviewed
 349-523 4.42e-07

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 54.66  E-value: 4.42e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  349 PEPTSKEPAPTTPKEPELTIPKEPAPTTKkPAPTTPKEPAPTTPKEPEPTTPKESapTTPKEPAPTTPKEPAPTTPKEpA 428
Cdd:PRK10811   861 AEEVQVQPVVAEVPVAAAVEPVVSAPVVE-AVAEVVEEPVVVAEPQPEEVVVVET--THPEVIAAPVTEQPQVITESD-V 936

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  429 PTTPKEPAPTTP-KEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKE-- 505
Cdd:PRK10811   937 AVAQEVAEHAEPvVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVEHNha 1016

                          170
                   ....*....|....*...
gi 2002298153  506 PAPTTpKEPAPTTPKEPA 523
Cdd:PRK10811  1017 TAPMT-RAPAPEYVPEAP 1033
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 386-535 4.43e-07

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 53.62  E-value: 4.43e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  386 EPAPTTPKEPEPTTPKESAPTTPKEPAPTtpkEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKE 465
Cdd:NF040712   189 DPDFGRPLRPLATVPRLAREPADARPEEV---EPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQPEDEPVGPGAA 265

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2002298153  466 PAPttpkEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTP---KEPAPTTP 535
Cdd:NF040712   266 PAA----EPDEATRDAGEPPAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPAPKpkrRRRRASVP 334
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 547-662 4.46e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 54.61  E-value: 4.46e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  547 APTTPKEPAPTTPKEPAPTTPKEPVPTTPK-EPASTTPKEPAPTTPKEPAPTTPKEPAP---TTPKEPAPTTPKEPAPTT 622
Cdd:PRK07764   385 LGVAGGAGAPAAAAPSAAAAAPAAAPAPAAaAPAAAAAPAPAAAPQPAPAPAPAPAPPSpagNAPAGGAPSPPPAAAPSA 464

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 2002298153  623 PKEPALTTPKEPAPTPkEPEPTTPKEPAPTTPKEPAPTTP 662
Cdd:PRK07764   465 QPAPAPAAAPEPTAAP-APAPPAAPAPAAAPAAPAAPAAP 503
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 610-779 4.56e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 54.10  E-value: 4.56e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  610 PAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPApTTKKPELTIPKEPVPTTPKEPA 689
Cdd:PRK07994   366 PEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQL-LAARQQLQRAQGATKAKKSEPA 444

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  690 PTTPKEPAPTTTKKPELSTPKEPTSTNPKEPEPTLPKEPeltlpeepepsnpetSDELIAELAEAPTPKALennpKEPTV 769
Cdd:PRK07994   445 AASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKA---------------TNPVEVKKEPVATPKAL----KKALE 505

                          170
                   ....*....|
gi 2002298153  770 PTETPEVSKP 779
Cdd:PRK07994   506 HEKTPELAAK 515
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
 369-519 4.93e-07

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 53.83  E-value: 4.93e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  369 PKEPAPTTKKPAPT--TPKEPAPTTPKEP-EPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPkepAPTTPKEPAP 445
Cdd:PRK13108   295 ALEREPAELAAAAVasAASAVGPVGPGEPnQPDDVAEAVKAEVAEVTDEVAAESVVQVADRDGESTP---AVEETSEADI 371

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2002298153  446 TTKKPEPTTPKEPA-PTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKePESTTPKEPAPTTPkEPAPTTP 519
Cdd:PRK13108   372 EREQPGDLAGQAPAaHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPI-PDPAKPDELAVAGP-GDDPAEP 444
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 491-622 4.98e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 54.22  E-value: 4.98e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  491 APTTPKEPESTTPKEPAPTTPKEPAPTtPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPttpKEPAPTTPKEP 570
Cdd:PRK07764   385 LGVAGGAGAPAAAAPSAAAAAPAAAPA-PAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAP---AGGAPSPPPAA 460

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 2002298153  571 VPTTPKEPASTtpkePAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTT 622
Cdd:PRK07764   461 APSAQPAPAPA----AAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADD 508
PHA03247 PHA03247
large tegument protein UL36; Provisional
 341-528 5.03e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 54.56  E-value: 5.03e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  341 PVPTTTKGPE----PTSKEPAPTTPKEPEltiPKEPAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKE------ 410
Cdd:PHA03247   255 PAPPPVVGEGadraPETARGATGPPPPPE---AAAPNGAAAPPDGVWGAALAGAPLALPAPPDPPPPAPAGDAEeedded 331

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  411 -------PAPTTPKEPAPTTPKEPAPT----------------TPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPA 467
Cdd:PHA03247   332 gamevvsPLPRPRQHYPLGFPKRRRPTwtppssledlsagrhhPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPV 411

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2002298153  468 PTTPKEPAPNTPKEPAPTTPKEPAPT-TPKEPESTTPKePAPTTPKEPAPTTPKEPAPTTPK 528
Cdd:PHA03247   412 PASVPTPAPTPVPASAPPPPATPLPSaEPGSDDGPAPP-PERQPPAPATEPAPDDPDDATRK 472
PRK08691 PRK08691
DNA polymerase III subunits gamma and tau; Validated
 573-759 6.00e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236333 [Multi-domain]  Cd Length: 709  Bit Score: 53.94  E-value: 6.00e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  573 TTPKEPASTTPKEPAPTTPKEPAPTTPKEPAP-TTPKEPA-PTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEPA 650
Cdd:PRK08691   375 TELQSPSAQTAEKETAAKKPQPRPEAETAQTPvQTASAAAmPSEGKTAGPVSNQENNDVPPWEDAPDEAQTAAGTAQTSA 454

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  651 PTTPKEPAPTTPKEPAPTTKKPELTIPKEPVPTTPKE-PAPTTP-KEPAPTTTKKPELSTPKEPTSTNPKEPEPT----- 723
Cdd:PRK08691   455 KSIQTASEAETPPENQVSKNKAADNETDAPLSEVPSEnPIQATPnDEAVETETFAHEAPAEPFYGYGFPDNDCPPedgae 534

                          170       180       190
                   ....*....|....*....|....*....|....*.
gi 2002298153  724 LPKEPELTLPEEPEPSNPETSDELIAELAEAPTPKA 759
Cdd:PRK08691   535 IPPPDWEHAAPADTAGGGADEEAEAGGIGGNNTPSA 570
rne PRK10811
ribonuclease E; Reviewed
 300-475 6.59e-07

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 53.89  E-value: 6.59e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  300 TSAKETRSAENTSAKDVEPTSTTPKNSAPTTTKKPVTTTKEPVPTTTKGPEPTSKEPAPTTPKEPELTIPK-EPAPTTKK 378
Cdd:PRK10811   848 VRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEvIAAPVTEQ 927

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  379 PAPTTPKEP--APTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPK 456
Cdd:PRK10811   928 PQVITESDVavAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVP 1007

                          170       180
                   ....*....|....*....|....*..
gi 2002298153  457 EP--------APTTpKEPAPTTPKEPA 475
Cdd:PRK10811  1008 EAtvehnhatAPMT-RAPAPEYVPEAP 1033
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
 379-486 6.76e-07

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteriztic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 50.05  E-value: 6.76e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  379 PAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKK-PEPTTPKE 457
Cdd:pfam02389   14 QEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKvPEPCHPKA 93

                           90       100       110
                   ....*....|....*....|....*....|.
gi 2002298153  458 PAPTTPKEPAP--TTPKEPAPNTPKEPAPTT 486
Cdd:pfam02389   94 PEPCHPKVPEPcyPKAPEPCQPKVPEPCPST 124
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 545-693 7.14e-07

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 52.85  E-value: 7.14e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  545 EPAPTTPKEPAPTTPKE---PAPTTPKEPVPTTPKEPASTTPKEPAPT-TPKEPAPTTPKEPAPTTPKEPAPTTPKEPAP 620
Cdd:NF040712   189 DPDFGRPLRPLATVPRLarePADARPEEVEPAPAAEGAPATDSDPAEAgTPDDLASARRRRAGVEQPEDEPVGPGAAPAA 268

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2002298153  621 TTPKEpalTTPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAPTTKkpeltiPKEPVPTTPKEPA--PTTP 693
Cdd:NF040712   269 EPDEA---TRDAGEPPAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPAR------PEPPPAPKPKRRRrrASVP 334
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 523-654 7.75e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 53.84  E-value: 7.75e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  523 APTTPKEPAPTTPKEPAPTTPKEPAPTtPKEPAPTTPKEPAPTTPKEPVPTtpkePASTTPKEPAPTTP-KEPAPTTPKE 601
Cdd:PRK07764   385 LGVAGGAGAPAAAAPSAAAAAPAAAPA-PAAAAPAAAAAPAPAAAPQPAPA----PAPAPAPPSPAGNApAGGAPSPPPA 459

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 2002298153  602 PAPTTPKEPAPTTPKEPAPTTPKEPalttPKEPAPTPKEPEPTTPKEPAPTTP 654
Cdd:PRK07764   460 AAPSAQPAPAPAAAPEPTAAPAPAP----PAAPAPAAAPAAPAAPAAPAGADD 508
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 314-468 8.08e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 53.33  E-value: 8.08e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  314 KDVEPTSTTPKNSAPTTTKKPVTttkePVPTTTKGPEPTSKEPAPTTPKEPELTIPKEPAPTTKKPAPTTP--KEPAPTT 391
Cdd:PRK07994   362 AAPLPEPEVPPQSAAPAASAQAT----AAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQlqRAQGATK 437

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2002298153  392 PKEPEPTTPKESAPtTPKEPAPTTPKEPAPTTPkePAPTTPKEPAPTTPKEPAPtTKKPEPTTPKEPAPTTPKEPAP 468
Cdd:PRK07994   438 AKKSEPAAASRARP-VNSALERLASVRPAPSAL--EKAPAKKEAYRWKATNPVE-VKKEPVATPKALKKALEHEKTP 510
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
343-500 8.55e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 53.43  E-value: 8.55e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  343 PTTTKGPEPTSKEPAPTTPKEPELTIPKEPAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPA---------- 412
Cdd:PRK14948   375 ANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPSLNLEELwqqilaklel 454

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  413 PTT-------------------------------------------------------PKEPAPTTPKEPAPTTPKEPAP 437
Cdd:PRK14948   455 PSTrmllsqqaelvsldsnraviavspnwlgmvqsrkplleqafakvlgrsiklnlesQSGSASNTAKTPPPPQKSPPPP 534

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2002298153  438 TTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPkEPAPTTPKEPAPTTPKEPES 500
Cdd:PRK14948   535 APTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSP-PPPIPEEPTPSPTKDSSPEE 596
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
323-482 8.69e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 53.43  E-value: 8.69e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  323 PKNSAPTTTKKPVTTTKEPVPTTTKGPEPTSKEPAPTTPKEPELTIPKEPAPTTKKPAPTTPKEPAPTTPKEPEPTT--- 399
Cdd:PRK14948   363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPSLnle 442

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  400 ---------------------------------------------------------------------PKESAPTTPKE 410
Cdd:PRK14948   443 elwqqilaklelpstrmllsqqaelvsldsnraviavspnwlgmvqsrkplleqafakvlgrsiklnleSQSGSASNTAK 522

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2002298153  411 PAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEP 482
Cdd:PRK14948   523 TPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTPSPTKDSSP 594
PRK08691 PRK08691
DNA polymerase III subunits gamma and tau; Validated
 523-728 8.88e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236333 [Multi-domain]  Cd Length: 709  Bit Score: 53.56  E-value: 8.88e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  523 APTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTtpkePAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEP 602
Cdd:PRK08691   363 AASCDANAVIENTELQSPSAQTAEKETAAKKPQPR----PEAETAQTPVQTASAAAMPSEGKTAGPVSNQENNDVPPWED 438

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  603 APTTPKEPAPTTPKEPA-------PTTPKEPALTTPKEPAPTPKEPEPTTPKE-PAPTTP-KEPAPT-TPKEPAPTTKKP 672
Cdd:PRK08691   439 APDEAQTAAGTAQTSAKsiqtaseAETPPENQVSKNKAADNETDAPLSEVPSEnPIQATPnDEAVETeTFAHEAPAEPFY 518

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2002298153  673 ELTIPKEPVPTTPKEPAPTTPKE-PAPTTTKKPELSTPKEPTSTNpkepEPTLPKEP 728
Cdd:PRK08691   519 GYGFPDNDCPPEDGAEIPPPDWEhAAPADTAGGGADEEAEAGGIG----GNNTPSAP 571
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 579-665 8.94e-07

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 53.74  E-value: 8.94e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  579 ASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAlttpkEPAPTPKEPEPTTPKEPAPTTPKEPA 658
Cdd:PRK12270    34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAA-----PPKPAAAAAAAAAPAAPPAAAAAAAP 108


                   ....*..
gi 2002298153  659 PTTPKEP 665
Cdd:PRK12270   109 AAAAVED 115
PRK14949 PRK14949
DNA polymerase III subunits gamma and tau; Provisional
 423-580 9.66e-07

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237863 [Multi-domain]  Cd Length: 944  Bit Score: 53.58  E-value: 9.66e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  423 TPKEPAptTPKEPAPTTPKEP---APTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPE 499
Cdd:PRK14949   630 SPKEGD--GKKSSADRKPKTPpsrAPPASLSKPASSPDASQTSASFDLDPDFELATHQSVPEAALASGSAPAPPPVPDPY 707

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  500 STTPKEPAPTTpkEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTpkEPAPT----TPKEPAPTTPKEPAPTTPKEPVPTTP 575
Cdd:PRK14949   708 DRPPWEEAPEV--ASANDGPNNAAEGNLSESVEDASNSELQAV--EQQAThqpqVQAEAQSPASTTALTQTSSEVQDTEL 783


                   ....*
gi 2002298153  576 KEPAS 580
Cdd:PRK14949   784 NLVLL 788
FimV COG3170
Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];
457-699 9.74e-07

Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];


Pssm-ID: 442403 [Multi-domain]  Cd Length: 508  Bit Score: 52.87  E-value: 9.74e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  457 EPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPK------EP 530
Cdd:COG3170    105 DPPAYAAAAAAPAAAPAPAPAAPAAAAAAADQPAAEAAPAASGEYYPVRPGDTLWSIAARPVRPSSGVSLDQmmvalyRA 184

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  531 APTTPKEPAPTTPKEPAPT---TPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTP 607
Cdd:COG3170    185 NPDAFIDGNINRLKAGAVLrvpAAEEVAALSPAEARQEVQAQSADWAAYRARLAAAVEPAPAAAAPAAPPAAAAAAGPVP 264

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  608 KEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEP---EPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPELTIPKEPVPTT 684
Cdd:COG3170    265 AAAEDTLSPEVTAAAAAEEADALPEAAAELAERLaalEAQLAELQRLLALKNPAPAAAVSAPAAAAAAATVEAAAPAAAA 344

                          250
                   ....*....|....*
gi 2002298153  685 PKEPAPTTPKEPAPT 699
Cdd:COG3170    345 QPAAAAPAPALDNPL 359
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 529-677 1.09e-06

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 52.46  E-value: 1.09e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  529 EPAPTTPKEPAPTTPKE---PAPTTPKEPAPTTPKEPAPTTPKEPVPT-TPKEPASTTPKEPAPTTPKEPAPTTPKEPAP 604
Cdd:NF040712   189 DPDFGRPLRPLATVPRLarePADARPEEVEPAPAAEGAPATDSDPAEAgTPDDLASARRRRAGVEQPEDEPVGPGAAPAA 268

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2002298153  605 ttpkEPAPTTPKEPAPTTPKEPALTTPKEPAPtPKEPEPTTPKEPAPTTPKEPAPttPKEPAPTTKKPELTIP 677
Cdd:NF040712   269 ----EPDEATRDAGEPPAPGAAETPEAAEPPA-PAPAAPAAPAAPEAEEPARPEP--PPAPKPKRRRRRASVP 334
PRK14949 PRK14949
DNA polymerase III subunits gamma and tau; Provisional
 441-603 1.14e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237863 [Multi-domain]  Cd Length: 944  Bit Score: 53.19  E-value: 1.14e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  441 KEPAPTTKKPEPTTPKEPApttpkePAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTT-- 518
Cdd:PRK14949   637 KKSSADRKPKTPPSRAPPA------SLSKPASSPDASQTSASFDLDPDFELATHQSVPEAALASGSAPAPPPVPDPYDrp 710

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  519 PKEPAPTTpkEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTpkEPAPTTPkepvPTTPKEPASTTPKEPAPTTPKEPAPTT 598
Cdd:PRK14949   711 PWEEAPEV--ASANDGPNNAAEGNLSESVEDASNSELQAV--EQQATHQ----PQVQAEAQSPASTTALTQTSSEVQDTE 782


                   ....*
gi 2002298153  599 PKEPA 603
Cdd:PRK14949   783 LNLVL 787
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 611-715 1.17e-06

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 53.36  E-value: 1.17e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  611 APTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPELTIPKEPVPTTPKEPAP 690
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117

                           90       100
                   ....*....|....*....|....*
gi 2002298153  691 TTPKEPAPTTTKKPELSTpKEPTST 715
Cdd:PRK12270   118 TPLRGAAAAVAKNMDASL-EVPTAT 141
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 435-529 1.21e-06

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 52.54  E-value: 1.21e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  435 PAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTT--PKEPESTTPKEPAP-TTP 511
Cdd:COG3266    265 SAPATTSLGEQQEVSLPPAVAAQPAAAAAAQPSAVALPAAPAAAAAAAAPAEAAAPQPTAakPVVTETAAPAAPAPeAAA 344

                           90
                   ....*....|....*...
gi 2002298153  512 KEPAPTTPKEPAPTTPKE 529
Cdd:COG3266    345 AAAAPAAPAVAKKLAADE 362
PHA03377 PHA03377
EBNA-3C; Provisional
 298-731 1.23e-06

EBNA-3C; Provisional


Pssm-ID: 177614 [Multi-domain]  Cd Length: 1000  Bit Score: 53.13  E-value: 1.23e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  298 KTTSAKETRSAENTSAKDVEPTSTTPKNSAPTTTKKPVTTTKEPVPTT---------TKGPEPTSKEPAPTTPKEP---- 364
Cdd:PHA03377   425 KTHPVKRTLVKTSGRSDEAEQAQSTPERPGPSDQPSVPVEPAHLTPVEhttvilhqpPQSPPTVAIKPAPPPSRRRrgac 504

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  365 -----------------ELTIPKEPAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEP 427
Cdd:PHA03377   505 vvydddiievidvetteEEESVTQPAKPHRKVQDGFQRSGRRQKRATPPKVSPSDRGPPKASPPVMAPPSTGPRVMATPS 584

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  428 APTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAP--TTPKEPAPTT----PKEPAPNTPKEPAPTTPKE-----PAPTTPK 496
Cdd:PHA03377   585 TGPRDMAPPSTGPRQQAKCKDGPPASGPHEKQPpsSAPRDMAPSVvrmfLRERLLEQSTGPKPKSFWEmragrDGSGIQQ 664

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  497 EPESTTPKEPAPTTPKEP-APTTPKEPAPTTPKePAPTTPKEPAPTTPKEPA----PTTPKEPAPTTPKEPAPTTPKEPV 571
Cdd:PHA03377   665 EPSSRRQPATQSTPPRPSwLPSVFVLPSVDAGR-AQPSEESHLSSMSPTQPIsheeQPRYEDPDDPLDLSLHPDQAPPPS 743

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  572 PTTP----KEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPK 647
Cdd:PHA03377   744 HQAPysghEEPQAQQAPYPGYWEPRPPQAPYLGYQEPQAQGVQVSSYPGYAGPWGLRAQHPRYRHSWAYWSQYPGHGHPQ 823

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  648 EPAPTTPKEPAPTTPKEPAPTTKKPELTIP--KEPVPTTPKEP-APTTPKEPAPTTTKKPELSTPKEPTSTNP---KEPE 721
Cdd:PHA03377   824 GPWAPRPPHLPPQWDGSAGHGQDQVSQFPHlqSETGPPRLQLSqVPQLPYSQTLVSSSAPSWSSPQPRAPIRPiptRFPP 903

                          490
                   ....*....|
gi 2002298153  722 PTLPKEPELT 731
Cdd:PHA03377   904 PPMPLQDSMA 913
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 311-630 1.30e-06

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 52.65  E-value: 1.30e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  311 TSAKDVEPTSTTPKNSAPTTTKKPVTttkepvPTTTKGPEPTSKEPAPTTPKEPELTIPKEPAPTTKKPAP-TTPKEPAP 389
Cdd:pfam17823  111 ASRALAAAASSSPSSAAQSLPAAIAA------LPSEAFSAPRAAACRANASAAPRAAIAAASAPHAASPAPrTAASSTTA 184

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  390 TTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTpkEPAPTTKKPEPTTPKEPAPTTPKEPAPT 469
Cdd:pfam17823  185 ASSTTAASSAPTTAASSAPATLTPARGISTAATATGHPAAGTALAAVGNS--SPAAGTVTAAVGTVTPAALATLAAAAGT 262

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  470 TPKEPAPNTPKEPAPTTPkEPAPTTPKEPESTTPKEPA-PTTPKEPAPTTPKEPAPTTPKEPAPT-TPKEPAPTTPKEPA 547
Cdd:pfam17823  263 VASAAGTINMGDPHARRL-SPAKHMPSDTMARNPAAPMgAQAQGPIIQVSTDQPVHNTAGEPTPSpSNTTLEPNTPKSVA 341

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  548 PTTPKEPAPTTPKEPAPTTPKEPVPTTPKEP-----ASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTT 622
Cdd:pfam17823  342 STNLAVVTTTKAQAKEPSASPVPVLHTSMIPeveatSPTTQPSPLLPTQGAAGPGILLAPEQVATEATAGTASAGPTPRS 421


                   ....*...
gi 2002298153  623 PKEPALTT 630
Cdd:pfam17823  422 SGDPKTLA 429
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 355-495 1.30e-06

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 52.08  E-value: 1.30e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  355 EPAPTTPkEPELTIPKEPAPTtkkPAPTTPKEPAPTTPKEPEPTTPKESAPT-TPKEPAPTTPKEPAPTTPKEPAPTTPK 433
Cdd:NF040712   189 DPDFGRP-LRPLATVPRLARE---PADARPEEVEPAPAAEGAPATDSDPAEAgTPDDLASARRRRAGVEQPEDEPVGPGA 264

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  434 EPAP-----TTPKEPAPTTKKPEPTTPKEPAPTTPKEPA-PTTPKEPAPNTPKEPAPTTPKEPA--PTTP 495
Cdd:NF040712   265 APAAepdeaTRDAGEPPAPGAAETPEAAEPPAPAPAAPAaPAAPEAEEPARPEPPPAPKPKRRRrrASVP 334
DUF4045 pfam13254
Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. ...
 397-556 1.31e-06

Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is typically between 384 and 430 amino acids in length.


Pssm-ID: 433066 [Multi-domain]  Cd Length: 415  Bit Score: 52.48  E-value: 1.31e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  397 PTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAP 476
Cdd:pfam13254  197 PNSFKEVTPVGLMRSPAPGGHSKSPSVSGISADSSPTKEEPSEEADTLSTDKEQSPAPTSASEPPPKTKELPKDSEEPAA 276

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  477 NTPKEPAPTTPKEPAptTPKEPESTTPKEPAPTTPKEPAPTTPKePAPTTPKEPAPTTPKEPAPTT-------PKEPAPT 549
Cdd:pfam13254  277 PSKSAEASTEKKEPD--TESSPETSSEKSAPSLLSPVSKASIDK-PLSSPDRDPLSPKPKPQSPPKdfranlrSREVPKD 353


                   ....*..
gi 2002298153  550 TPKEPAP 556
Cdd:pfam13254  354 KSKKDEP 360
rne PRK10811
ribonuclease E; Reviewed
 305-498 1.36e-06

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 53.12  E-value: 1.36e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  305 TRSAENTSAKDVEPTSTTPKNSAPTTTKKPVTTTKEPVPTTtkgpeptskEPAPTTPKEPELTipKEPAPTTKKPAPTTP 384
Cdd:PRK10811   848 VRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVV---------EAVAEVVEEPVVV--AEPQPEEVVVVETTH 916

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  385 KEPAPTTPKEPEPTTPKESAPTtpkepAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPK 464
Cdd:PRK10811   917 PEVIAAPVTEQPQVITESDVAV-----AQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEV 991

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|..
gi 2002298153  465 EPAPTTPKEPAPNTPKEP--------APTTpKEPAPTTPKEP 498
Cdd:PRK10811   992 ETVTAVEPEVAPAQVPEAtvehnhatAPMT-RAPAPEYVPEA 1032
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 619-712 1.53e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 52.50  E-value: 1.53e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  619 APTTPKEPALTTPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEltiPKEPVPTTPKEPAPTTPKEPAP 698
Cdd:PRK14950   361 VPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPR---PVAPPVPHTPESAPKLTRAAIP 437

                           90
                   ....*....|....
gi 2002298153  699 TTTkKPELSTPKEP 712
Cdd:PRK14950   438 VDE-KPKYTPPAPP 450
PHA03377 PHA03377
EBNA-3C; Provisional
 343-779 1.71e-06

EBNA-3C; Provisional


Pssm-ID: 177614 [Multi-domain]  Cd Length: 1000  Bit Score: 52.75  E-value: 1.71e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  343 PTTTKGPEPTSKEPAPTTPKEPELTIPKEPAPTTKKPAPTTPKEPAPTTPKEPEPT--------TPKESAPTTPKEPAPT 414
Cdd:PHA03377   416 PRTLPWPTPKTHPVKRTLVKTSGRSDEAEQAQSTPERPGPSDQPSVPVEPAHLTPVehttvilhQPPQSPPTVAIKPAPP 495

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  415 TPKEPA----------------PTTPKEPAPTTPKEP---------------APTTPKEPAPTTKKPEPTTPKEPAPTTP 463
Cdd:PHA03377   496 PSRRRRgacvvydddiievidvETTEEEESVTQPAKPhrkvqdgfqrsgrrqKRATPPKVSPSDRGPPKASPPVMAPPST 575

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  464 KEPAPTTPKE------PAPNTPKEPAPTTPKEPAPTT-PKEPESTTPKEPAPTTPKE-------PAPTTPK--------- 520
Cdd:PHA03377   576 GPRVMATPSTgprdmaPPSTGPRQQAKCKDGPPASGPhEKQPPSSAPRDMAPSVVRMflrerllEQSTGPKpksfwemra 655

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  521 -EPAPTTPKEPAPTTPKEPAPTTPKEP-APTTPKEPA-PTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEpAPT 597
Cdd:PHA03377   656 gRDGSGIQQEPSSRRQPATQSTPPRPSwLPSVFVLPSvDAGRAQPSEESHLSSMSPTQPISHEEQPRYEDPDDPLD-LSL 734

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  598 TPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPELTIP 677
Cdd:PHA03377   735 HPDQAPPPSHQAPYSGHEEPQAQQAPYPGYWEPRPPQAPYLGYQEPQAQGVQVSSYPGYAGPWGLRAQHPRYRHSWAYWS 814

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  678 KEPVPTTPKepAPTTPKEPAPTTTKKPELSTPKEPTSTNPKEPEPTLPKEPELTLPEEPEPSNPETSdeliaelaeAPTP 757
Cdd:PHA03377   815 QYPGHGHPQ--GPWAPRPPHLPPQWDGSAGHGQDQVSQFPHLQSETGPPRLQLSQVPQLPYSQTLVS---------SSAP 883

                          490       500
                   ....*....|....*....|....
gi 2002298153  758 KALENNPKEPT--VPTETPEVSKP 779
Cdd:PHA03377   884 SWSSPQPRAPIrpIPTRFPPPPMP 907
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 601-729 1.72e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 52.41  E-value: 1.72e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  601 EPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAPTTkkpeltiPKEP 680
Cdd:PRK14951   372 AAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAA-------APAA 444

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*....
gi 2002298153  681 VPTTPKEPAPTTPKEPAPTTTKKPELSTPKEPTSTNPKEPEPTLPKEPE 729
Cdd:PRK14951   445 VALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEE 493
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 309-554 1.80e-06

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 52.24  E-value: 1.80e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  309 ENTSAKDVEPTSTTPKNSAPTTTKKPVTTTKEPVPTTTKGPEPTSKEPAPTTPKEP--ELTIPKEPAPTTKKPAPTTPKE 386
Cdd:PLN03209   321 AKIPSQRVPPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPYTAyeDLKPPTSPIPTPPSSSPASSKS 400

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  387 -PAPTTPKEPEPTTPKESAPTTP-KEPAPTTPKEPAPTTP--KEPAPTTPKEPAPTTPKEPAPTTKKPePTTPKEPAPTT 462
Cdd:PLN03209   401 vDAVAKPAEPDVVPSPGSASNVPeVEPAQVEAKKTRPLSPyaRYEDLKPPTSPSPTAPTGVSPSVSST-SSVPAVPDTAP 479

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  463 PKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPkEPESTTPKEPAPTTPKepAPTTPKEPAPTTPKEPAPTTPKEPAPTT 542
Cdd:PLN03209   480 ATAATDAAAPPPANMRPLSPYAVYDDLKPPTSP-SPAAPVGKVAPSSTNE--VVKVGNSAPPTALADEQHHAQPKPRPLS 556

                          250
                   ....*....|....*....
gi 2002298153  543 P-------KEPAPTTPKEP 554
Cdd:PLN03209   557 PytmyedlKPPTSPTPSPV 575
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
 404-575 1.83e-06

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 51.90  E-value: 1.83e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  404 APTTPKEPAPTTPKEPAPTTPKEPapttpkEPAPTTPKEPAPTTKKPEPTTPKEPA-PTTPKEPAPTTPKEPAPNTPKEP 482
Cdd:PRK13108   275 APKGREAPGALRGSEYVVDEALER------EPAELAAAAVASAASAVGPVGPGEPNqPDDVAEAVKAEVAEVTDEVAAES 348

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  483 APTTPKEPAPTTPKEPESTTP--KEPAPTTPKEPAPTTPKEPA---PTTPKEPAPTTPKEPAPTTPKEPAPTTPKePAPT 557
Cdd:PRK13108   349 VVQVADRDGESTPAVEETSEAdiEREQPGDLAGQAPAAHQVDAeaaSAAPEEPAALASEAHDETEPEVPEKAAPI-PDPA 427

                          170
                   ....*....|....*...
gi 2002298153  558 TPKEPAPTTPkEPVPTTP 575
Cdd:PRK13108   428 KPDELAVAGP-GDDPAEP 444
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
 638-729 2.08e-06

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteriztic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 48.51  E-value: 2.08e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  638 PKEPEPTTPKEPAPTTPKEPAPTTPKEPAP-TTKKPELTIPKEPVPTTPKEPAPTTPKEPAPTTTKKPELSTPKEPTSTN 716
Cdd:pfam02389   11 PPPQEPCVPTTKEPCHSKVPEPCNPKVPEPcCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPKVPEPCH 90

                           90
                   ....*....|...
gi 2002298153  717 PKEPEPTLPKEPE 729
Cdd:pfam02389   91 PKAPEPCHPKVPE 103
PRK14949 PRK14949
DNA polymerase III subunits gamma and tau; Provisional
 464-628 2.16e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237863 [Multi-domain]  Cd Length: 944  Bit Score: 52.42  E-value: 2.16e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  464 KEPAPTTpKEPAPNTPKEPAPttpkEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTP 543
Cdd:PRK14949   637 KKSSADR-KPKTPPSRAPPAS----LSKPASSPDASQTSASFDLDPDFELATHQSVPEAALASGSAPAPPPVPDPYDRPP 711

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  544 KEPAPTTpkEPAPTTPKEPAPTTPKEPVPTTPKEPASTTpkEPAPTtpkePAPTTPKEPAPTTPKEPAPTTPKEPAPTTP 623
Cdd:PRK14949   712 WEEAPEV--ASANDGPNNAAEGNLSESVEDASNSELQAV--EQQAT----HQPQVQAEAQSPASTTALTQTSSEVQDTEL 783


                   ....*
gi 2002298153  624 KEPAL 628
Cdd:PRK14949   784 NLVLL 788
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 341-710 2.67e-06

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 51.84  E-value: 2.67e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  341 PVPTTTKGPEPTSKEPAPTTPKEP-ELTIPKEPAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEP 419
Cdd:pfam05109  432 PTLNTTGFAAPNTTTGLPSSTHVPtNLTAPASTGPTVSTADVTSPTPAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTS 511

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  420 APTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTpKEPAPNTPKEPAPTTPKEPAPTTPKePE 499
Cdd:pfam05109  512 AVTTPTPNATSPTPAVTTPTPNATSPTLGKTSPTSAVTTPTPNATSPTPAV-TTPTPNATIPTLGKTSPTSAVTTPT-PN 589

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  500 STTP----KEPAPTTPKEPAPTTPKEPAPTTPKEPAP---TTPKEPAPTTPKEPAPTTPKEPAPT-TPKEPAPTTPKEPV 571
Cdd:pfam05109  590 ATSPtvgeTSPQANTTNHTLGGTSSTPVVTSPPKNATsavTTGQHNITSSSTSSMSLRPSSISETlSPSTSDNSTSHMPL 669

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  572 PTT--PKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEP 649
Cdd:pfam05109  670 LTSahPTGGENITQVTPASTSTHHVSTSSPAPRPGTTSQASGPGNSSTSTKPGEVNVTKGTPPKNATSPQAPSGQKTAVP 749

                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2002298153  650 APTTPKEPAPTTPKEPAPTTKKPELTIPkepvPTTPKEPAPTTPKEPAPTTTKKPELSTPK 710
Cdd:pfam05109  750 TVTSTGGKANSTTGGKHTTGHGARTSTE----PTTDYGGDSTTPRTRYNATTYLPPSTSSK 806
PRK14949 PRK14949
DNA polymerase III subunits gamma and tau; Provisional
 399-563 2.67e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237863 [Multi-domain]  Cd Length: 944  Bit Score: 52.03  E-value: 2.67e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  399 TPKESAptTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAP--TTPKEPAPTTKKPEPTTPKEPAPT-TPKEPAPTTPKEPA 475
Cdd:PRK14949   630 SPKEGD--GKKSSADRKPKTPPSRAPPASLSKPASSPDAsqTSASFDLDPDFELATHQSVPEAALaSGSAPAPPPVPDPY 707

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  476 PNTPKEPAPTTpkEPAPTTPKEPESTTPKEPAPTTPKEPAPTTpkEPAPTtpkePAPTTPKEPAPTTPKEPAPTTPKEPA 555
Cdd:PRK14949   708 DRPPWEEAPEV--ASANDGPNNAAEGNLSESVEDASNSELQAV--EQQAT----HQPQVQAEAQSPASTTALTQTSSEVQ 779


                   ....*...
gi 2002298153  556 PTTPKEPA 563
Cdd:PRK14949   780 DTELNLVL 787
DUF4045 pfam13254
Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. ...
 444-706 2.78e-06

Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is typically between 384 and 430 amino acids in length.


Pssm-ID: 433066 [Multi-domain]  Cd Length: 415  Bit Score: 51.32  E-value: 2.78e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  444 APTTKKPEPTTPKEpAPTTPKEPAPTTPKEPAPNTPKEPA----PTTPKEPAPTTPKEPESTTPK---EPA---PTTPKE 513
Cdd:pfam13254   88 RHSKDDERPSTPDE-GFVKPALPRHSRSSSALSNTGSEEDspslPTSPPSPSKTMDPKRWSPTKSswlESAlnrPESPKP 166

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  514 PA-PTTPKEPA-----------PTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASt 581
Cdd:pfam13254  167 KAqPSQPAQPAwmkelnkirqsRASVDLGRPNSFKEVTPVGLMRSPAPGGHSKSPSVSGISADSSPTKEEPSEEADTLS- 245

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  582 TPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAlttpkepapTPKEPEPTTPKEPAPTTPKEPAPTT 661
Cdd:pfam13254  246 TDKEQSPAPTSASEPPPKTKELPKDSEEPAAPSKSAEASTEKKEPD---------TESSPETSSEKSAPSLLSPVSKASI 316

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*
gi 2002298153  662 PKEPAPTTKKPELTIPKePVPTTPKEPAPTTPKEPAPTTTKKPEL 706
Cdd:pfam13254  317 DKPLSSPDRDPLSPKPK-PQSPPKDFRANLRSREVPKDKSKKDEP 360
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 434-578 3.00e-06

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 50.92  E-value: 3.00e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  434 EPAPTTPKEPAPTTKKPEPttpkEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPkePAPTTPKEPESTTPKEPAPTTPKE 513
Cdd:NF040712   189 DPDFGRPLRPLATVPRLAR----EPADARPEEVEPAPAAEGAPATDSDPAEAGT--PDDLASARRRRAGVEQPEDEPVGP 262

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2002298153  514 PAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEP 578
Cdd:NF040712   263 GAAPAAEPDEATRDAGEPPAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPAPKPKRR 327
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 563-693 3.20e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 51.53  E-value: 3.20e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  563 APTTPKEPVPTTPKEPASTTPKEPAPTtPKEPAPTTPKEPAPTTPKEPAPTtpkePAPTTPKEPALTTPKEPAPTPKEPE 642
Cdd:PRK07764   385 LGVAGGAGAPAAAAPSAAAAAPAAAPA-PAAAAPAAAAAPAPAAAPQPAPA----PAPAPAPPSPAGNAPAGGAPSPPPA 459

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 2002298153  643 PTTPKEPAPTTPKEPAPTTPKEPAPTTkkpeltiPKEPVPTTPKEPAPTTP 693
Cdd:PRK07764   460 AAPSAQPAPAPAAAPEPTAAPAPAPPA-------APAPAAAPAAPAAPAAP 503
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 459-521 3.37e-06

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 51.05  E-value: 3.37e-06
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2002298153  459 APTTPKEPAPTTPKEPAPNTPkePAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKE 521
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPP--ASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
FimV COG3170
Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];
372-623 3.41e-06

Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];


Pssm-ID: 442403 [Multi-domain]  Cd Length: 508  Bit Score: 51.33  E-value: 3.41e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  372 PAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPkEPAPTTPKEPAPTTPKEPAPTTKKPE 451
Cdd:COG3170    107 PAYAAAAAAPAAAPAPAPAAPAAAAAAADQPAAEAAPAASGEYYPVRPGDTLW-SIAARPVRPSSGVSLDQMMVALYRAN 185

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  452 PTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPA 531
Cdd:COG3170    186 PDAFIDGNINRLKAGAVLRVPAAEEVAALSPAEARQEVQAQSADWAAYRARLAAAVEPAPAAAAPAAPPAAAAAAGPVPA 265

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  532 pttpkEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTpkEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPK-EPAPTTPKEP 610
Cdd:COG3170    266 -----AAEDTLSPEVTAAAAAEEADALPEAAAELA--ERLAALEAQLAELQRLLALKNPAPAAAVSAPAaAAAAATVEAA 338

                          250
                   ....*....|...
gi 2002298153  611 APTTPKEPAPTTP 623
Cdd:COG3170    339 APAAAAQPAAAAP 351
TALPID3 pfam15324
Hedgehog signalling target; TALPID3 is a family of eukaryotic proteins that are targets for ...
 341-534 3.42e-06

Hedgehog signalling target; TALPID3 is a family of eukaryotic proteins that are targets for Hedgehog signalling. Mutations in this gene noticed first in chickens lead to multiple abnormalities of development.


Pssm-ID: 434634 [Multi-domain]  Cd Length: 1288  Bit Score: 51.81  E-value: 3.42e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  341 PVPTTTKGPEPTSKEPAPTTPKEPELTIPKEPAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTpkEPAPTTPKEPA 420
Cdd:pfam15324  983 LLPTPVPTPQPTPPCSPPSPLKEPSPVKTPDSSPCVSEHDFFPVKEIPPEKGADTGPAVSLVITPTV--TPIATPPPAAT 1060

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  421 PTtpkepapttpkepaPTTPKEPAPTTKKPEPTTPKepapttPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPES 500
Cdd:pfam15324 1061 PT--------------PPLSENSIDKLKSPSPELPK------PWEDSDLPLEEENPNSEQEELHPRAVVMSVARDEEPES 1120

                          170       180       190
                   ....*....|....*....|....*....|....*
gi 2002298153  501 -TTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTT 534
Cdd:pfam15324 1121 vVLPASPPEPKPLAPPPLGAAPPSPPQSPSSSSST 1155
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 466-561 3.96e-06

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 51.00  E-value: 3.96e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  466 PAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPkEPAPTTPKEPAPTT--PKEPAPTTPKEPAP-TT 542
Cdd:COG3266    265 SAPATTSLGEQQEVSLPPAVAAQPAAAAAAQPSAVALPAAPAAAAA-AAAPAEAAAPQPTAakPVVTETAAPAAPAPeAA 343

                           90
                   ....*....|....*....
gi 2002298153  543 PKEPAPTTPKEPAPTTPKE 561
Cdd:COG3266    344 AAAAAPAAPAVAKKLAADE 362
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 559-780 4.77e-06

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 50.70  E-value: 4.77e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  559 PKEPAPTTPKEPVPTTPKEPASTTPKEPapTTPKEPAPTTPKEPAPTTPKEP-APTTPKEPAPTTPKEPAlTTPKEPAPT 637
Cdd:PLN03209   330 PKESDAADGPKPVPTKPVTPEAPSPPIE--EEPPQPKAVVPRPLSPYTAYEDlKPPTSPIPTPPSSSPAS-SKSVDAVAK 406

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  638 PKEPEPTTPKEPAPTTPKEPAPTTPKEPA----PTTKKPELTIPKEPVPTTPKEPAPTTPKEPAptTTKKPELSTPKEPT 713
Cdd:PLN03209   407 PAEPDVVPSPGSASNVPEVEPAQVEAKKTrplsPYARYEDLKPPTSPSPTAPTGVSPSVSSTSS--VPAVPDTAPATAAT 484

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2002298153  714 STNPKEPEPTLPKEPELTLPEEPEPSNPETSDELIAELAEAPTPKALENNPKEPTVPTETPEVSKPE 780
Cdd:PLN03209   485 DAAAPPPANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQHHAQPK 551
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
 608-723 4.96e-06

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteriztic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 47.36  E-value: 4.96e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  608 KEPAPTTPKEPAPTTPKEPALTTPKEPApTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAP-TTKKPELTIPKEPVPTTPK 686
Cdd:pfam02389    6 KQPCQPPPQEPCVPTTKEPCHSKVPEPC-NPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPcCPKVPEPCYPKVPEPCSPK 84

                           90       100       110
                   ....*....|....*....|....*....|....*....
gi 2002298153  687 EPAPTTPKEPAPTTTKKPELSTPKEPTSTNP--KEPEPT 723
Cdd:pfam02389   85 VPEPCHPKAPEPCHPKVPEPCYPKAPEPCQPkvPEPCPS 123
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 387-489 4.96e-06

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 50.62  E-value: 4.96e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  387 PAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPkEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEP 466
Cdd:COG3266    265 SAPATTSLGEQQEVSLPPAVAAQPAAAAAAQPSAVALPAAPAAAAA-AAAPAEAAAPQPTAAKPVVTETAAPAAPAPEAA 343

                           90       100
                   ....*....|....*....|...
gi 2002298153  467 APTtpkePAPNTPKEPAPTTPKE 489
Cdd:COG3266    344 AAA----AAPAAPAVAKKLAADE 362
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 611-729 5.24e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 51.14  E-value: 5.24e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  611 APTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAPTTkkPELTIPKEPVPTTPKEPAP 690
Cdd:PRK07764   385 LGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPS--PAGNAPAGGAPSPPPAAAP 462

                           90       100       110
                   ....*....|....*....|....*....|....*....
gi 2002298153  691 TTPKEPAPTTTKKPELSTPKEPTSTNPKEPEPTLPKEPE 729
Cdd:PRK07764   463 SAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPA 501
PHA03378 PHA03378
EBNA-3B; Provisional
 449-775 5.81e-06

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 50.84  E-value: 5.81e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  449 KPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPA----PTTPKEPAP-------- 516
Cdd:PHA03378   431 RKKKAARTEQPRATPHSQAPTVVLHRPPTQPLEGPTGPLSVQAPLEPWQPLPHPQVTPVilhqPPAQGVQAHgsmldlle 510

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  517 -----------TTPKEPAPTTPK--EPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTP 583
Cdd:PHA03378   511 kddedmeqrvmATLLPPSPPQPRagRRAPCVYTEDLDIESDEPASTEPVHDQLLPAPGLGPLQIQPLTSPTTSQLASSAP 590

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  584 K-------EPAPTTPKEPAPTTPKEPAPTTPKE------PAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTT----P 646
Cdd:PHA03378   591 SyaqtpwpVPHPSQTPEPPTTQSHIPETSAPRQwpmplrPIPMRPLRMQPITFNVLVFPTPHQPPQVEITPYKPTwtqiG 670

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  647 KEPAPTTPKEPAPTTPKEPAPTTKKPEltiPKEPVPTTPKEPAPTTPKEPAPTTTKKPELSTPkePTSTNPKEPEPTLPK 726
Cdd:PHA03378   671 HIPYQPSPTGANTMLPIQWAPGTMQPP---PRAPTPMRPPAAPPGRAQRPAAATGRARPPAAA--PGRARPPAAAPGRAR 745

                          330       340       350       360
                   ....*....|....*....|....*....|....*....|....*....
gi 2002298153  727 EPELTLPEEPEPSNPETSDELIAELAEAPTPkalENNPKEPTVPTETPE 775
Cdd:PHA03378   746 PPAAAPGRARPPAAAPGRARPPAAAPGAPTP---QPPPQAPPAPQQRPR 791
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 641-727 6.41e-06

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 50.66  E-value: 6.41e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  641 PEPTTPKEPAPTTPKEPAPTTPKEPAPTTkkpeltiPKEPVPTTPKEPAPTTPKEPAPTTTKKPELSTPKEPTSTNPKEP 720
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKA-------PAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAA 110


                   ....*..
gi 2002298153  721 EPTLPKE 727
Cdd:PRK12270   111 AAVEDEV 117
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 346-448 6.59e-06

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 50.23  E-value: 6.59e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  346 TKGPEPTSKEPAP-TTPKEPELTIPKEPAPTTKKPAPTTPKEPAPTTPKEPEPTTPkESAPTTPKEPAPTT--PKEPAPT 422
Cdd:COG3266    255 LKAPSQASSASAPaTTSLGEQQEVSLPPAVAAQPAAAAAAQPSAVALPAAPAAAAA-AAAPAEAAAPQPTAakPVVTETA 333

                           90       100
                   ....*....|....*....|....*..
gi 2002298153  423 TPKEPAP-TTPKEPAPTTPKEPAPTTK 448
Cdd:COG3266    334 APAAPAPeAAAAAAAPAAPAVAKKLAA 360
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
583-728 6.87e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 50.35  E-value: 6.87e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  583 PKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAltTPKEPAPTPKEPEPTTPKEPAPTTPKEPAPT-- 660
Cdd:PRK14948   363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPP--PAKASPPIPVPAEPTEPSPTPPANAANAPPSln 440

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  661 -------------------------------------------------------------------------------T 661
Cdd:PRK14948   441 leelwqqilaklelpstrmllsqqaelvsldsnraviavspnwlgmvqsrkplleqafakvlgrsiklnlesqsgsasnT 520

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2002298153  662 PKEPAPTTKKPELTIPKEPVPTTPKEPAPTTPKEPAPTTTKKPELSTPKEPTSTNPKEPEPTLPKEP 728
Cdd:PRK14948   521 AKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTPS 587
PLN03237 PLN03237
DNA topoisomerase 2; Provisional
 463-682 6.88e-06

DNA topoisomerase 2; Provisional


Pssm-ID: 215641 [Multi-domain]  Cd Length: 1465  Bit Score: 50.63  E-value: 6.88e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  463 PKEPAPTTPKEPAPNTpkEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPA--PTTPKEPAPTTPKEPAPTTPKEPAP 540
Cdd:PLN03237  1202 PKKPAPKKTTKKASES--ETTEETYGSSAMETENVAEVVKPKGRAGAKKKAPAaaKEKEEEDEILDLKDRLAAYNLDSAP 1279

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  541 TTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKE-PAPTTPKE----PAPTTPKE-PAPTTPKEPAPTT 614
Cdd:PLN03237  1280 AQSAKMEETVKAVPARRAAARKKPLASVSVISDSDDDDDDFAVEVsLAERLKKKggrkPAAANKKAaKPPAAAKKRGPAT 1359

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2002298153  615 PKEPAP--TTPKEPALT--TPKEPAPTPKEPEPTTPKEPAP----TTPKEPAPTTPKEPAPTTKKPELTIPKEPVP 682
Cdd:PLN03237  1360 VQSGQKllTEMLKPAEAigISPEKKVRKMRASPFNKKSGSVlgraATNKETESSENVSGSSSSEKDEIDVSAKPRP 1435
PRK12727 PRK12727
flagellar biosynthesis protein FlhF;
459-667 7.57e-06

flagellar biosynthesis protein FlhF;


Pssm-ID: 237182 [Multi-domain]  Cd Length: 559  Bit Score: 50.37  E-value: 7.57e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  459 APTTPKEPAPTTPKEPAPnTPKEPAPTTPKEPAPTTPK-EPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPttpkE 537
Cdd:PRK12727    54 ALETARSDTPATAAAPAP-APQAPTKPAAPVHAPLKLSaNANMSQRQRVASAAEDMIAAMALRQPVSVPRQAPAA----A 128

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  538 PAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKePAPTTPKE 617
Cdd:PRK12727   129 PVRAASIPSPAAQALAHAAAVRTAPRQEHALSAVPEQLFADFLTTAPVPRAPVQAPVVAAPAPVPAIAAAL-AAHAAYAQ 207

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|
gi 2002298153  618 PAPTTPKEPALTTPKEPAPTpKEPEPTTPKEPAPTTPKEPAPTTPKEPAP 667
Cdd:PRK12727   208 DDDEQLDDDGFDLDDALPQI-LPPAALPPIVVAPAAPAALAAVAAAAPAP 256
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
 507-689 7.60e-06

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 49.98  E-value: 7.60e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  507 APTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPA-PTTPKEPAPTTPKEPA-PTTPKEPAPTTPKEPVPTTPKEPASTTPK 584
Cdd:PRK13108   275 APKGREAPGALRGSEYVVDEALEREPAELAAAAvASAASAVGPVGPGEPNqPDDVAEAVKAEVAEVTDEVAAESVVQVAD 354

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  585 EPAPTTPKepapttPKEPAPTTPKEPAPTTPKEPAPTTPKEPAlttpKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKe 664
Cdd:PRK13108   355 RDGESTPA------VEETSEADIEREQPGDLAGQAPAAHQVDA----EAASAAPEEPAALASEAHDETEPEVPEKAAPI- 423

                          170       180
                   ....*....|....*....|....*
gi 2002298153  665 paPTTKKPELTIPKEPVPtTPKEPA 689
Cdd:PRK13108   424 --PDPAKPDELAVAGPGD-DPAEPD 445
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 377-591 7.61e-06

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 50.42  E-value: 7.61e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  377 KKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPT---TPKEPAP------------TTPKEPAPTTPKEPAPTTPK 441
Cdd:pfam09770  105 QQPAARAAQSSAQPPASSLPQYQYASQQSQQPSKPVRTgyeKYKEPEPipdlqvdaslwgVAPKKAAAPAPAPQPAAQPA 184

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  442 EPAPTTKK------------PEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPT 509
Cdd:pfam09770  185 SLPAPSRKmmsleeveaamrAQAKKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQQHPGQGHPVT 264

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  510 TPKEPAPTTPKEPAPTTPkePAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPT 589
Cdd:pfam09770  265 ILQRPQSPQPDPAQPSIQ--PQAQQFHQQPPPVPVQPTQILQNPNRLSAARVGYPQNPQPGVQPAPAHQAHRQQGSFGRQ 342


                   ..
gi 2002298153  590 TP 591
Cdd:pfam09770  343 AP 344
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 488-707 7.67e-06

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 50.42  E-value: 7.67e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  488 KEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPT---TPKEPAP------------TTPKEPAPTTPKEPAPTTPK 552
Cdd:pfam09770  105 QQPAARAAQSSAQPPASSLPQYQYASQQSQQPSKPVRTgyeKYKEPEPipdlqvdaslwgVAPKKAAAPAPAPQPAAQPA 184

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  553 EPAPTTPK-------EPA----PTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPT 621
Cdd:pfam09770  185 SLPAPSRKmmsleevEAAmraqAKKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQQHPGQGHPVT 264

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  622 TPKEPALTTPKEPAPTPKEPEPTTPKEPAPtTPKEPA--------PTTPKEPAPTTKKPeltiPKEPVPTTPKEPAPTTP 693
Cdd:pfam09770  265 ILQRPQSPQPDPAQPSIQPQAQQFHQQPPP-VPVQPTqilqnpnrLSAARVGYPQNPQP----GVQPAPAHQAHRQQGSF 339

                          250
                   ....*....|....
gi 2002298153  694 KEPAPTTTKKPELS 707
Cdd:pfam09770  340 GRQAPIITHPQQLA 353
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
600-670 7.69e-06

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 50.38  E-value: 7.69e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2002298153  600 KEPAPTTPKEPAPTTPKEPAPTTPkepalTTPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAPTTK 670
Cdd:COG5373     40 AAEAASAPAEPEPEAAAAATAAAP-----EAAPAPVPEAPAAPPAAAEAPAPAAAAPPAEAEPAAAPAAAS 105
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 514-609 7.70e-06

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 49.85  E-value: 7.70e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  514 PAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPkEPAPTTPKEPVPTT--PKEPASTTPKEPAP-TT 590
Cdd:COG3266    265 SAPATTSLGEQQEVSLPPAVAAQPAAAAAAQPSAVALPAAPAAAAA-AAAPAEAAAPQPTAakPVVTETAAPAAPAPeAA 343

                           90
                   ....*....|....*....
gi 2002298153  591 PKEPAPTTPKEPAPTTPKE 609
Cdd:COG3266    344 AAAAAPAAPAVAKKLAADE 362
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
409-478 8.59e-06

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 50.38  E-value: 8.59e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  409 KEPAPTTPKEPAPttpkePAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNT 478
Cdd:COG5373     40 AAEAASAPAEPEP-----EAAAAATAAAPEAAPAPVPEAPAAPPAAAEAPAPAAAAPPAEAEPAAAPAAA 104
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 627-729 9.17e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 49.81  E-value: 9.17e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  627 ALTTPKePAPTPKEPEPTTPK----EPAPTTPKEPAPTTPKEPAPTtkKPElTIPKEPVPTTPKEPAPTTPKEPAPTTTk 702
Cdd:PRK14950   358 ALLVPV-PAPQPAKPTAAAPSpvrpTPAPSTRPKAAAAANIPPKEP--VRE-TATPPPVPPRPVAPPVPHTPESAPKLT- 432

                           90       100
                   ....*....|....*....|....*..
gi 2002298153  703 kpelsTPKEPTSTNPKEPEPTLPKEPE 729
Cdd:PRK14950   433 -----RAAIPVDEKPKYTPPAPPKEEE 454
PRK12727 PRK12727
flagellar biosynthesis protein FlhF;
446-636 9.37e-06

flagellar biosynthesis protein FlhF;


Pssm-ID: 237182 [Multi-domain]  Cd Length: 559  Bit Score: 49.99  E-value: 9.37e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  446 TTKKPEPTTPKEPAPtTPKEPAPTTPKEPAPNTPKEPAPTTPKEP---------APTTPKEPESTTPKEPAPttpkEPAP 516
Cdd:PRK12727    57 TARSDTPATAAAPAP-APQAPTKPAAPVHAPLKLSANANMSQRQRvasaaedmiAAMALRQPVSVPRQAPAA----APVR 131

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  517 TTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKePAPTTPKEPA- 595
Cdd:PRK12727   132 AASIPSPAAQALAHAAAVRTAPRQEHALSAVPEQLFADFLTTAPVPRAPVQAPVVAAPAPVPAIAAAL-AAHAAYAQDDd 210

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*.
gi 2002298153  596 -----PTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAP 636
Cdd:PRK12727   211 eqlddDGFDLDDALPQILPPAALPPIVVAPAAPAALAAVAAAAPAP 256
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
592-661 9.43e-06

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 50.00  E-value: 9.43e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  592 KEPAPTTPKEPAPttpkePAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTT 661
Cdd:COG5373     40 AAEAASAPAEPEP-----EAAAAATAAAPEAAPAPVPEAPAAPPAAAEAPAPAAAAPPAEAEPAAAPAAA 104
PRK10905 PRK10905
cell division protein DamX; Validated
 442-611 9.52e-06

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 49.17  E-value: 9.52e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  442 EPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPK-----------EPAPTTPKEPAPTTPKEPESTTPKEPAPTT 510
Cdd:PRK10905    52 QPAPGTTSAEQTAGNTQQDVSLPPISSTPTQGQTPVATDgqqrvevqgdlNNALTQPQNQQQLNNVAVNSTLPTEPATVA 131

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  511 PKEPAPTTPKEPAPTTPKEPAPTTP-KEPAPTTPKEP--APTTPKEPAPTTPKEPAPTTPKEPvpttPKEPASTTPKEPA 587
Cdd:PRK10905   132 PVRNGNASRQTAKTQTAERPATTRPaRKQAVIEPKKPqaTAKTEPKPVAQTPKRTEPAAPVAS----TKAPAATSTPAPK 207

                          170       180
                   ....*....|....*....|....
gi 2002298153  588 PTTPKEPAPTTpkEPAPTTPKEPA 611
Cdd:PRK10905   208 ETATTAPVQTA--SPAQTTATPAA 229
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 242-623 9.60e-06

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 50.30  E-value: 9.60e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  242 TASPKTTAAKPVTPKPSLAPNSETSKEASSTSnkettvetkettetnkqssaskkekTTSAKETRSAENTSAKdvePTST 321
Cdd:pfam05109  477 TPAGTTSGASPVTPSPSPRDNGTESKAPDMTS-------------------------PTSAVTTPTPNATSPT---PAVT 528

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  322 TPKNSAPTTTKKPVTTTKepvPTTTKGPEPTSKEPAPTTPKePELTIPK--EPAPTTKKPAPTTPKEPAPTTPKEPEPTT 399
Cdd:pfam05109  529 TPTPNATSPTLGKTSPTS---AVTTPTPNATSPTPAVTTPT-PNATIPTlgKTSPTSAVTTPTPNATSPTVGETSPQANT 604

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  400 PKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTP--KEPAPTTPKEPAPN 477
Cdd:pfam05109  605 TNHTLGGTSSTPVVTSPPKNATSAVTTGQHNITSSSTSSMSLRPSSISETLSPSTSDNSTSHMPllTSAHPTGGENITQV 684

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  478 TPKEPAP--TTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPA 555
Cdd:pfam05109  685 TPASTSThhVSTSSPAPRPGTTSQASGPGNSSTSTKPGEVNVTKGTPPKNATSPQAPSGQKTAVPTVTSTGGKANSTTGG 764

                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2002298153  556 PTTPKEPAPTTPKepvPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTP 623
Cdd:pfam05109  765 KHTTGHGARTSTE---PTTDYGGDSTTPRTRYNATTYLPPSTSSKLRPRWTFTSPPVTTAQATVPVPP 829
PRK10905 PRK10905
cell division protein DamX; Validated
 428-635 1.01e-05

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 49.17  E-value: 1.01e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  428 APTTPK-EPAPTTPKEPAPTTKKPEPTTPKEPAP-TTPKEPAPTTPKEPAPNTPKEPAPTTPKEP-APTTPKEPESTTPK 504
Cdd:PRK10905    22 APSTSSsDQTASGEKSIDLAGNATDQANGVQPAPgTTSAEQTAGNTQQDVSLPPISSTPTQGQTPvATDGQQRVEVQGDL 101

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  505 EPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTP-KEPAPTTPKEP--VPTTPKEPAST 581
Cdd:PRK10905   102 NNALTQPQNQQQLNNVAVNSTLPTEPATVAPVRNGNASRQTAKTQTAERPATTRPaRKQAVIEPKKPqaTAKTEPKPVAQ 181

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....
gi 2002298153  582 TPKEPAPTTPKEPAPTtpkePAPTTPKEPAPTTPKEPAPTTpkEPALTTPKEPA 635
Cdd:PRK10905   182 TPKRTEPAAPVASTKA----PAATSTPAPKETATTAPVQTA--SPAQTTATPAA 229
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 385-607 1.11e-05

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 50.03  E-value: 1.11e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  385 KEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPT---TPKEPapttpkEPAP----------TTPKEPAPTTKKPE 451
Cdd:pfam09770  105 QQPAARAAQSSAQPPASSLPQYQYASQQSQQPSKPVRTgyeKYKEP------EPIPdlqvdaslwgVAPKKAAAPAPAPQ 178

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  452 PTTPKEPAPTTPK--------EPA----PTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTP 519
Cdd:pfam09770  179 PAAQPASLPAPSRkmmsleevEAAmraqAKKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQQHPG 258

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  520 KEPAPTTPKEPAPTTPKEPAPTTPkePAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTP 599
Cdd:pfam09770  259 QGHPVTILQRPQSPQPDPAQPSIQ--PQAQQFHQQPPPVPVQPTQILQNPNRLSAARVGYPQNPQPGVQPAPAHQAHRQQ 336


                   ....*...
gi 2002298153  600 KEPAPTTP 607
Cdd:pfam09770  337 GSFGRQAP 344
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 340-418 1.14e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 49.89  E-value: 1.14e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2002298153  340 EPVPTTTKGPEPTSKEPAPTTPKEPELTIPKEPAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKE 418
Cdd:PRK12270    39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 398-497 1.14e-05

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 49.46  E-value: 1.14e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  398 TTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPkePAPTTPKEPAPTTKKPEPTTPkEPAPTTPKEPAPTTPKEPAP- 476
Cdd:COG3266    265 SAPATTSLGEQQEVSLPPAVAAQPAAAAAAQPSAV--ALPAAPAAAAAAAAPAEAAAP-QPTAAKPVVTETAAPAAPAPe 341

                           90       100
                   ....*....|....*....|.
gi 2002298153  477 NTPKEPAPTTPKEPAPTTPKE 497
Cdd:COG3266    342 AAAAAAAPAAPAVAKKLAADE 362
PRK10905 PRK10905
cell division protein DamX; Validated
 344-523 1.16e-05

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 49.17  E-value: 1.16e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  344 TTTKGPEPTSKEPAPTTPKEpELTIPKEPAPTTKKPAPTTPK-----------EPAPTTPKEPEPTTPKESAPTTPKEPA 412
Cdd:PRK10905    50 GVQPAPGTTSAEQTAGNTQQ-DVSLPPISSTPTQGQTPVATDgqqrvevqgdlNNALTQPQNQQQLNNVAVNSTLPTEPA 128

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  413 PTTPKEPAPTTPKEPAPTTPKEPAPTTP--KEPAPTTKKPEPTTPKEPapttpkEPAPTTPKEPAPNTPKEPAPTtpkeP 490
Cdd:PRK10905   129 TVAPVRNGNASRQTAKTQTAERPATTRParKQAVIEPKKPQATAKTEP------KPVAQTPKRTEPAAPVASTKA----P 198

                          170       180       190
                   ....*....|....*....|....*....|...
gi 2002298153  491 APTTPKEPESTTPKEPAPTTpkEPAPTTPKEPA 523
Cdd:PRK10905   199 AATSTPAPKETATTAPVQTA--SPAQTTATPAA 229
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 525-630 1.17e-05

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 49.46  E-value: 1.17e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  525 TTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPttpkEPASTTPKEPAPTTPKEPAPTTPKEPAP 604
Cdd:COG3266    265 SAPATTSLGEQQEVSLPPAVAAQPAAAAAAQPSAVALPAAPAAAAAAA----APAEAAAPQPTAAKPVVTETAAPAAPAP 340

                           90       100
                   ....*....|....*....|....*..
gi 2002298153  605 -TTPKEPAPTTPKEPAPTTPKEPALTT 630
Cdd:COG3266    341 eAAAAAAAPAAPAVAKKLAADEQWLAS 367
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 343-424 1.18e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 49.89  E-value: 1.18e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  343 PTTTKGPEPTSKEPAPTTPKEPELTIPKEPAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPT 422
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117


                   ..
gi 2002298153  423 TP 424
Cdd:PRK12270   118 TP 119
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 441-545 1.18e-05

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 49.46  E-value: 1.18e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  441 KEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTP-KEPESTTPKEPAPTTPKEPAPTTP 519
Cdd:COG3266    256 KAPSQASSASAPATTSLGEQQEVSLPPAVAAQPAAAAAAQPSAVALPAAPAAAAAaAAPAEAAAPQPTAAKPVVTETAAP 335

                           90       100
                   ....*....|....*....|....*..
gi 2002298153  520 KEPAP-TTPKEPAPTTPKEPAPTTPKE 545
Cdd:COG3266    336 AAPAPeAAAAAAAPAAPAVAKKLAADE 362
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 318-497 1.20e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 49.60  E-value: 1.20e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  318 PTSTTPKNSAPTTTKKPVTTTKEPVPTTTKGPEPTSK---EPAPTTPKEPELTIPKEPAPTTKKPAPTTPKEPAPTTPKE 394
Cdd:PRK07764   629 PAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGgdgWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAAT 708

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  395 PEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPttkkPEPTTPKEPAPTTPKEPAPTTPKEP 474
Cdd:PRK07764   709 PPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPP----PPPAPAPAAAPAAAPPPSPPSEEEE 784

                          170       180
                   ....*....|....*....|...
gi 2002298153  475 APNTPKEPAPTTPKEPAPTTPKE 497
Cdd:PRK07764   785 MAEDDAPSMDDEDRRDAEEVAME 807
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 490-585 1.30e-05

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 49.46  E-value: 1.30e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  490 PAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPkEPAPTTPKEPAPTT--PKEPAPTTPKEPAP-TT 566
Cdd:COG3266    265 SAPATTSLGEQQEVSLPPAVAAQPAAAAAAQPSAVALPAAPAAAAA-AAAPAEAAAPQPTAakPVVTETAAPAAPAPeAA 343

                           90
                   ....*....|....*....
gi 2002298153  567 PKEPVPTTPKEPASTTPKE 585
Cdd:COG3266    344 AAAAAPAAPAVAKKLAADE 362
PHA03377 PHA03377
EBNA-3C; Provisional
 311-723 1.31e-05

EBNA-3C; Provisional


Pssm-ID: 177614 [Multi-domain]  Cd Length: 1000  Bit Score: 49.67  E-value: 1.31e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  311 TSAKDVEPTSTTPKNSAPTTTKKPVTTTKEPVPTTTkGPEPTSKEPAPTTPKEPELTIPKEPAPTT------KKPAPTTP 384
Cdd:PHA03377   585 TGPRDMAPPSTGPRQQAKCKDGPPASGPHEKQPPSS-APRDMAPSVVRMFLRERLLEQSTGPKPKSfwemraGRDGSGIQ 663

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  385 KEPAPTTPKEPEPTTPKES-APTTPKEPAPTTPKePAPTTPKEPAPTTPKEPaptTPKEPAPTTKKPEPTTPKEPAPTTP 463
Cdd:PHA03377   664 QEPSSRRQPATQSTPPRPSwLPSVFVLPSVDAGR-AQPSEESHLSSMSPTQP---ISHEEQPRYEDPDDPLDLSLHPDQA 739

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  464 KEPAPTTPKE--PAPNTPKEPAPTTPKEPAPTTP----KEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 537
Cdd:PHA03377   740 PPPSHQAPYSghEEPQAQQAPYPGYWEPRPPQAPylgyQEPQAQGVQVSSYPGYAGPWGLRAQHPRYRHSWAYWSQYPGH 819

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  538 PAPTTPKEPAPttpkePAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTT-PKEPAPTTPKEPAPTTPKEPAPTTPK 616
Cdd:PHA03377   820 GHPQGPWAPRP-----PHLPPQWDGSAGHGQDQVSQFPHLQSETGPPRLQLSQvPQLPYSQTLVSSSAPSWSSPQPRAPI 894

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  617 EPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPELtipkepvpttpkEPAPTTPKEP 696
Cdd:PHA03377   895 RPIPTRFPPPPMPLQDSMAVGCDSSGTACPSMPFASDYSQGAFTPLDINAQTPKRPRV------------EESSHGPARC 962

                          410       420
                   ....*....|....*....|....*..
gi 2002298153  697 APTTTKKPELSTPKEPTSTNPKEPEPT 723
Cdd:PHA03377   963 SQATTEAQEILSDNSEISVFPKDAKQT 989
dnaA PRK14086
chromosomal replication initiator protein DnaA;
522-718 1.48e-05

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 49.44  E-value: 1.48e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  522 PAPTTPKEPAPTTPKEPAPTTPKEPAPttPKEPAPTTPKEPA----PTTPKEPVPTT--PKEPASTTPKEPAPTtPKEPA 595
Cdd:PRK14086    87 TVDPSAGEPAPPPPHARRTSEPELPRP--GRRPYEGYGGPRAddrpPGLPRQDQLPTarPAYPAYQQRPEPGAW-PRAAD 163

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  596 PTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPkEPAPTTPKEPAPTTPkEPAPTTKKPELT 675
Cdd:PRK14086   164 DYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRDYDHP-RPDWDRPRRDRTDRP-EPPPGAGHVHRG 241

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....
gi 2002298153  676 IPKEPVPTTPKEPaPTTPKEPAPTTTKKPELSTPKEPT-STNPK 718
Cdd:PRK14086   242 GPGPPERDDAPVV-PIRPSAPGPLAAQPAPAPGPGEPTaRLNPK 284
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 482-577 1.51e-05

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 49.08  E-value: 1.51e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  482 PAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPkEPAPTTPKEPAPTT--PKEPAPTTPKEPAP-TT 558
Cdd:COG3266    265 SAPATTSLGEQQEVSLPPAVAAQPAAAAAAQPSAVALPAAPAAAAA-AAAPAEAAAPQPTAakPVVTETAAPAAPAPeAA 343

                           90
                   ....*....|....*....
gi 2002298153  559 PKEPAPTTPKEPVPTTPKE 577
Cdd:COG3266    344 AAAAAPAAPAVAKKLAADE 362
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 342-428 1.52e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 49.50  E-value: 1.52e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  342 VPTTTKGPEPTSKEPAPTTPKEPELTIPKEPAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAP 421
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117


                   ....*..
gi 2002298153  422 TTPKEPA 428
Cdd:PRK12270   118 TPLRGAA 124
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 561-722 1.52e-05

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 48.61  E-value: 1.52e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  561 EPAPTTPKEPVPTTPKEPasttpKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPkePAPTTPKEPALTTPKEPAPTPKE 640
Cdd:NF040712   189 DPDFGRPLRPLATVPRLA-----REPADARPEEVEPAPAAEGAPATDSDPAEAGT--PDDLASARRRRAGVEQPEDEPVG 261

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  641 PEPTTPKEPAPTTPKEPAPTTPKEPAPTTkkpeltiPKEPVPTTPKEPAPTTpkEPAPTTTKKPELSTPKEPTSTNPKEP 720
Cdd:NF040712   262 PGAAPAAEPDEATRDAGEPPAPGAAETPE-------AAEPPAPAPAAPAAPA--APEAEEPARPEPPPAPKPKRRRRRAS 332


                   ..
gi 2002298153  721 EP 722
Cdd:NF040712   333 VP 334
PRK14949 PRK14949
DNA polymerase III subunits gamma and tau; Provisional
 370-531 1.60e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237863 [Multi-domain]  Cd Length: 944  Bit Score: 49.34  E-value: 1.60e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  370 KEPAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPkEPAPTTPKEPAPTTPKEPAPTTKK 449
Cdd:PRK14949   637 KKSSADRKPKTPPSRAPPASLSKPASSPDASQTSASFDLDPDFELATHQSVPEAA-LASGSAPAPPPVPDPYDRPPWEEA 715

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  450 PEPttpkEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTpkEPAPTtpkePESTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 529
Cdd:PRK14949   716 PEV----ASANDGPNNAAEGNLSESVEDASNSELQAV--EQQAT----HQPQVQAEAQSPASTTALTQTSSEVQDTELNL 785


                   ..
gi 2002298153  530 PA 531
Cdd:PRK14949   786 VL 787
PRK10905 PRK10905
cell division protein DamX; Validated
 410-587 1.61e-05

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 48.40  E-value: 1.61e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  410 EPAP-TTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKE--PAPTTPKEPAPTTPKEPAPNTPKEPAPTT 486
Cdd:PRK10905    52 QPAPgTTSAEQTAGNTQQDVSLPPISSTPTQGQTPVATDGQQRVEVQGDlnNALTQPQNQQQLNNVAVNSTLPTEPATVA 131

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  487 PKEPAPTTPKEPESTTPKEPAPTTP-KEPAPTTPKEP--APTTPKEPAPTTPKEPAPTTPKEPAPTtpkePAPTTPKEPA 563
Cdd:PRK10905   132 PVRNGNASRQTAKTQTAERPATTRPaRKQAVIEPKKPqaTAKTEPKPVAQTPKRTEPAAPVASTKA----PAATSTPAPK 207

                          170       180
                   ....*....|....*....|....
gi 2002298153  564 PTTPKEPVPTTpkEPASTTPKEPA 587
Cdd:PRK10905   208 ETATTAPVQTA--SPAQTTATPAA 229
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 489-781 1.66e-05

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 49.00  E-value: 1.66e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  489 EPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPK 568
Cdd:NF033839   158 KPETPQPENPEHQKPTTPAPDTKPSPQPEGKKPSVPDINQEKEKAKLAVATYMSKILDDIQKHHLQKEKHRQIVALIKEL 237

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  569 EPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKE 648
Cdd:NF033839   238 DELKKQALSEIDNVNTKVEIENTVHKIFADMDAVVTKFKKGLTQDTPKEPGNKKPSAPKPGMQPSPQPEKKEVKPEPETP 317

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  649 PAPTTPKEPAPTTPKEPAPTTKKPE----LTIPKEPVPTTPKEPAPTTPKEP-APTTTKKPELSTPKEPTSTNPKEPEPT 723
Cdd:NF033839   318 KPEVKPQLEKPKPEVKPQPEKPKPEvkpqLETPKPEVKPQPEKPKPEVKPQPeKPKPEVKPQPETPKPEVKPQPEKPKPE 397

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 2002298153  724 LPKEPEltLPEEPEPSNPETSDELIAELAEAPTPKALENNPKEPTVPTETPEVSKPEM 781
Cdd:NF033839   398 VKPQPE--KPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEV 453
PRK14949 PRK14949
DNA polymerase III subunits gamma and tau; Provisional
 385-547 1.73e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237863 [Multi-domain]  Cd Length: 944  Bit Score: 49.34  E-value: 1.73e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  385 KEPAPttpkEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPK 464
Cdd:PRK14949   637 KKSSA----DRKPKTPPSRAPPASLSKPASSPDASQTSASFDLDPDFELATHQSVPEAALASGSAPAPPPVPDPYDRPPW 712

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  465 EPAPTTpkEPAPNTPKEPAPTTPKEPAPTTPKEPESTTpkEPAPTtpkePAPTTPKEPAPTTPKEPAPTTPKEPAPTTPK 544
Cdd:PRK14949   713 EEAPEV--ASANDGPNNAAEGNLSESVEDASNSELQAV--EQQAT----HQPQVQAEAQSPASTTALTQTSSEVQDTELN 784


                   ...
gi 2002298153  545 EPA 547
Cdd:PRK14949   785 LVL 787
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 506-602 1.86e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 48.91  E-value: 1.86e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  506 PAPTTPKEPAPTTPKEPAPTTPKEPAPTTPkePAPTTPKEPAPTTPkePAPTTPKEPAPTTPK-EPVPTTPKEPASTTPK 584
Cdd:PRK14959   400 PGTQGPQGTAPAAGMTPSSAAPATPAPSAA--PSPRVPWDDAPPAP--PRSGIPPRPAPRMPEaSPVPGAPDSVASASDA 475

                           90
                   ....*....|....*...
gi 2002298153  585 EPAPTTPKEPAPTTPKEP 602
Cdd:PRK14959   476 PPTLGDPSDTAEHTPSGP 493
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
401-470 1.97e-05

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 49.23  E-value: 1.97e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  401 KESAPTTPKEPAPttpkePAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTT 470
Cdd:COG5373     40 AAEAASAPAEPEP-----EAAAAATAAAPEAAPAPVPEAPAAPPAAAEAPAPAAAAPPAEAEPAAAPAAA 104
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 424-489 1.98e-05

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 48.53  E-value: 1.98e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2002298153  424 PKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKE 489
Cdd:PTZ00144   124 PPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRE 189
PRK12727 PRK12727
flagellar biosynthesis protein FlhF;
395-593 2.01e-05

flagellar biosynthesis protein FlhF;


Pssm-ID: 237182 [Multi-domain]  Cd Length: 559  Bit Score: 48.83  E-value: 2.01e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  395 PEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEP 474
Cdd:PRK12727    60 SDTPATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQRQRVASAAEDMIAAMALRQPVSVPRQAPAAAPVRAASIPSPA 139

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  475 APNTPKEPAPTTPKEPAPTTPKEPES------TTPKEPAPTTPKEPAPTTPKEPAPTTPKePAPTTPKEPAPTTPKEPAP 548
Cdd:PRK12727   140 AQALAHAAAVRTAPRQEHALSAVPEQlfadflTTAPVPRAPVQAPVVAAPAPVPAIAAAL-AAHAAYAQDDDEQLDDDGF 218

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*
gi 2002298153  549 TTPKEPAPTTPkePAPTTPKEPVPTTPKEPASTTPKEPAPTTPKE 593
Cdd:PRK12727   219 DLDDALPQILP--PAALPPIVVAPAAPAALAAVAAAAPAPQNDEE 261
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 531-593 2.04e-05

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 48.35  E-value: 2.04e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2002298153  531 APTTPKEPAPTTPKEPAPTTPkePAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKE 593
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPP--ASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 500-561 2.10e-05

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 48.35  E-value: 2.10e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2002298153  500 STTPKEPAPTTPKEPAPTTPkePAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 561
Cdd:TIGR00601   83 KVAPPAATPTSAPTPTPSPP--ASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
Not5 COG5665
CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription];
569-773 2.17e-05

CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription];


Pssm-ID: 444384 [Multi-domain]  Cd Length: 874  Bit Score: 48.89  E-value: 2.17e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  569 EPVPTTPKEPASTTPKEPAP-TTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEP-ALTTPKEPAPTP--KEPEPT 644
Cdd:COG5665    259 QPKSQPTSPSGGTTPPSTNQlTTSNTPTSTAKAQPQPPTKKQPAKEPPSDTASGNPSAPsVLINSDSPTSEDpaTASVPT 338

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  645 TPKEPAPTTPKEpAPTTPKEPAPTTKKPEL-TIPKEPVPTTPKEPAPTTPKEPAPTTTKKPELSTPKEP-TSTNPKEPEP 722
Cdd:COG5665    339 TEETTAFTTPSS-VPSTPAEKDTPATDLATpVSPTPPETSVDKKVSPDSATSSTKSEKEGGTASSPMPPnIAIGAKDDVD 417

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|.
gi 2002298153  723 TLPKEPELTLPEEPEPSNPETSDELIAELAEAPTPKAleNNPKEPTVPTET 773
Cdd:COG5665    418 ATDPSQEAKEYTKNAPMTPEADSAPESSVRTEASPSA--GSDLEPENTTLR 466
dnaA PRK14086
chromosomal replication initiator protein DnaA;
388-584 2.18e-05

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 48.67  E-value: 2.18e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  388 APTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTtPKEPAPTTKKPEPTTPKEPAPtTPKEPA 467
Cdd:PRK14086    86 ITVDPSAGEPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQ-DQLPTARPAYPAYQQRPEPGA-WPRAAD 163

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  468 PTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPaPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPA 547
Cdd:PRK14086   164 DYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRD-YDHPRPDWDRPRRDRTDRPEPPPGAGHVHRGG 242

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|..
gi 2002298153  548 PTTPKEPAPTTPKE--PAPTTPK---EPVPTTPKEPASTTPK 584
Cdd:PRK14086   243 PGPPERDDAPVVPIrpSAPGPLAaqpAPAPGPGEPTARLNPK 284
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 538-633 2.20e-05

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 48.69  E-value: 2.20e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  538 PAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPkEPAPTTPKEPAPTT--PKEPAPTTPKEPAP-TT 614
Cdd:COG3266    265 SAPATTSLGEQQEVSLPPAVAAQPAAAAAAQPSAVALPAAPAAAAA-AAAPAEAAAPQPTAakPVVTETAAPAAPAPeAA 343

                           90
                   ....*....|....*....
gi 2002298153  615 PKEPAPTTPKEPALTTPKE 633
Cdd:COG3266    344 AAAAAPAAPAVAKKLAADE 362
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
570-709 2.22e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 48.62  E-value: 2.22e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  570 PVPTTPKEPASTTPKEPA--PTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPkePALTTPKEPAPTPkePEPTTPK 647
Cdd:PRK14971   370 SGGRGPKQHIKPVFTQPAaaPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPP--TVSVDPPAAVPVN--PPSTAPQ 445

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2002298153  648 EPAPTTPKEPapttpkEPAPTTKKPELTIPKEPvPTTPKEPAPTTPKEPAPTTTKKPELSTP 709
Cdd:PRK14971   446 AVRPAQFKEE------KKIPVSKVSSLGPSTLR-PIQEKAEQATGNIKEAPTGTQKEIFTEE 500
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 628-715 2.34e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 49.12  E-value: 2.34e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  628 LTTPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPelTIPKEPVPTTPKEPAPTTPKEPAPTTTKKPELS 707
Cdd:PRK12270    33 FADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAA--AAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAA 110


                   ....*...
gi 2002298153  708 TPKEPTST 715
Cdd:PRK12270   111 AAVEDEVT 118
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
451-527 2.46e-05

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 48.64  E-value: 2.46e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2002298153  451 EPTTPKEPAPTTPKEPAPTTPKepapntPKEPAPTTPKEPAPTTPkEPESTTPKEPAPTTPKEPAPTTPKEPAPTTP 527
Cdd:PRK15313   559 EPDEPIIPDPVDPVIPDPVIPD------PVDPDPVDPVIPDPVIP-DPVDPDPVDPEPVDPVIPDPTIPDIGQSDTP 628
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 458-553 2.48e-05

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 48.31  E-value: 2.48e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  458 PAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPkEPAPTTPKEPAPTT--PKEPAPTTPKEPAP-TT 534
Cdd:COG3266    265 SAPATTSLGEQQEVSLPPAVAAQPAAAAAAQPSAVALPAAPAAAAA-AAAPAEAAAPQPTAakPVVTETAAPAAPAPeAA 343

                           90
                   ....*....|....*....
gi 2002298153  535 PKEPAPTTPKEPAPTTPKE 553
Cdd:COG3266    344 AAAAAPAAPAVAKKLAADE 362
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 499-626 2.53e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 48.52  E-value: 2.53e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  499 ESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPkePAPTTPKEPVPTTPkeP 578
Cdd:PRK14959   369 ESLRPSGGGASAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAA--PSPRVPWDDAPPAP--P 444

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*....
gi 2002298153  579 ASTTPKEPAPTTPK-EPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEP 626
Cdd:PRK14959   445 RSGIPPRPAPRMPEaSPVPGAPDSVASASDAPPTLGDPSDTAEHTPSGP 493
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 490-564 2.84e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 48.40  E-value: 2.84e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2002298153  490 PAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAP---TTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAP 564
Cdd:PRK14954   382 PSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPasaPTPEQQPPVARSAPLPPSPQASAPRNVASGKP 459
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 386-721 2.89e-05

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 48.45  E-value: 2.89e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  386 EPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTP-KEPAPTTP-KEPAPTTPKEPAPTTKKPEPTTP---KEPAP 460
Cdd:TIGR00927  101 EATPSIAMENTPSPPRRTAKITPTTPKNNYSPTAAGTERvKEDTPATPsRALNHYISTSGRQRVKSYTPKPRgevKSSSP 180

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  461 TTPKEPAPTTPKEPAPNTPKEPAPTTPKEpAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEpapTTPKEPAPTTPKEPAP 540
Cdd:TIGR00927  181 TQTREKVRKYTPSPLGRMVNSYAPSTFMT-MPRSHGITPRTTVKDSEITATYKMLETNPSK---RTAGKTTPTPLKGMTD 256

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  541 TTPkepaPTTPKEPAPTTPKEPAPTTPKEPVpTTPKEPASTTPKEPAPTTPKEpAPTTPKEpaptTPKEPAPTTPKEP-- 618
Cdd:TIGR00927  257 NTP----TFLTREVETDLLTSPRSVVEKNTL-TTPRRVESNSSTNHWGLVGKN-NLTTPQG----TVLEHTPATSEGQvt 326

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  619 -APTTPKEPALTTPKEPAPTPKEPEPTTPkepAPTTPKEPAPTTPKEPAPTTKKPELTIPK-EPVPTTPK------EPAP 690
Cdd:TIGR00927  327 iSIMTGSSPAETKASTAAWKIRNPLSRTS---APAVRIASATFRGLEKNPSTAPSTPATPRvRAVLTTQVhhcvvvKPAP 403

                          330       340       350
                   ....*....|....*....|....*....|...
gi 2002298153  691 TTPKEPAP--TTTKKPELSTPKePTSTNPKEPE 721
Cdd:TIGR00927  404 AVPTTPSPslTTALFPEAPSPS-PSALPPGQPD 435
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
508-583 2.91e-05

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 48.64  E-value: 2.91e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2002298153  508 PTTPKEPAPTTPKEPAPTTPKepapttPKEPAPTTPKEPAPTTPkEPAPTTPKEPAPTTPKEPVPTTPKEPASTTP 583
Cdd:PRK15313   560 PDEPIIPDPVDPVIPDPVIPD------PVDPDPVDPVIPDPVIP-DPVDPDPVDPEPVDPVIPDPTIPDIGQSDTP 628
PRK10819 PRK10819
transport protein TonB; Provisional
 394-531 3.24e-05

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 46.98  E-value: 3.24e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  394 EPEPTTPKESAPTTPKEPAPTtPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKE 473
Cdd:PRK10819    36 HQVIELPAPAQPISVTMVAPA-DLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVE 114

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 2002298153  474 PAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPA 531
Cdd:PRK10819   115 EQPKREVKPVEPRPASPFENTAPARPTSSTATAAASKPVTSVSSGPRALSRNQPQYPA 172
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 507-569 3.24e-05

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 47.97  E-value: 3.24e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2002298153  507 APTTPKEPAPTTPKEPAPTTPkePAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 569
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPP--ASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
PRK12727 PRK12727
flagellar biosynthesis protein FlhF;
491-698 3.24e-05

flagellar biosynthesis protein FlhF;


Pssm-ID: 237182 [Multi-domain]  Cd Length: 559  Bit Score: 48.06  E-value: 3.24e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  491 APTTPKEPESTTPKEPAPTtPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEP-APTTPKEPAPTTPKEPAPttpkE 569
Cdd:PRK12727    54 ALETARSDTPATAAAPAPA-PQAPTKPAAPVHAPLKLSANANMSQRQRVASAAEDMiAAMALRQPVSVPRQAPAA----A 128

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  570 PVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEP 649
Cdd:PRK12727   129 PVRAASIPSPAAQALAHAAAVRTAPRQEHALSAVPEQLFADFLTTAPVPRAPVQAPVVAAPAPVPAIAAALAAHAAYAQD 208

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*....
gi 2002298153  650 APTTPKEPAPTTPKEPAPTTKKPELTiPKEPVPTTPKEPAPTTPKEPAP 698
Cdd:PRK12727   209 DDEQLDDDGFDLDDALPQILPPAALP-PIVVAPAAPAALAAVAAAAPAP 256
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 409-521 3.33e-05

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 47.92  E-value: 3.33e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  409 KEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPkEPAPTTPKEPAPnTPKEPAPTTPK 488
Cdd:COG3266    256 KAPSQASSASAPATTSLGEQQEVSLPPAVAAQPAAAAAAQPSAVALPAAPAAAAA-AAAPAEAAAPQP-TAAKPVVTETA 333

                           90       100       110
                   ....*....|....*....|....*....|...
gi 2002298153  489 EPAPTTPKepesTTPKEPAPTTPKEPAPTTPKE 521
Cdd:COG3266    334 APAAPAPE----AAAAAAAPAAPAVAKKLAADE 362
dnaA PRK14086
chromosomal replication initiator protein DnaA;
374-568 3.40e-05

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 48.28  E-value: 3.40e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  374 PTTKKPAPTTPKEPA---PTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTT-PKEPAPTTPKEPAPTtPKEPAPTTKK 449
Cdd:PRK14086    90 PSAGEPAPPPPHARRtsePELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTArPAYPAYQQRPEPGAW-PRAADDYGWQ 168

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  450 PEPTTPKEPAP-TTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTpkEPESTTPKEPAPTTPkEPAPTTPKEPAPTTPK 528
Cdd:PRK14086   169 QQRLGFPPRAPyASPASYAPEQERDREPYDAGRPEYDQRRRDYDHP--RPDWDRPRRDRTDRP-EPPPGAGHVHRGGPGP 245

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|.
gi 2002298153  529 EPAPTTPKEPAptTPKEPAPTTPK-EPAPTTPKEPAPTTPK 568
Cdd:PRK14086   246 PERDDAPVVPI--RPSAPGPLAAQpAPAPGPGEPTARLNPK 284
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 375-442 3.79e-05

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 47.58  E-value: 3.79e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2002298153  375 TTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 442
Cdd:TIGR00601   75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
588-662 3.85e-05

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 48.26  E-value: 3.85e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2002298153  588 PTTPKEPAPTTPKEPAPTTPKepapttPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTP 662
Cdd:PRK15313   560 PDEPIIPDPVDPVIPDPVIPD------PVDPDPVDPVIPDPVIPDPVDPDPVDPEPVDPVIPDPTIPDIGQSDTP 628
dnaA PRK14086
chromosomal replication initiator protein DnaA;
408-608 4.04e-05

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 47.90  E-value: 4.04e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  408 PKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEP-APTT-PKEPAPTTPKEPAPnTPKEPAPT 485
Cdd:PRK14086    87 TVDPSAGEPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDqLPTArPAYPAYQQRPEPGA-WPRAADDY 165

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  486 TPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTpkEPAPTTPKEPAPTTPkEPAPTTPKEPAPT 565
Cdd:PRK14086   166 GWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRDYDHP--RPDWDRPRRDRTDRP-EPPPGAGHVHRGG 242

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|...
gi 2002298153  566 TPKEPVPTTPKEPASTTPKEPAPTTPkEPAPTTPKEPAPTTPK 608
Cdd:PRK14086   243 PGPPERDDAPVVPIRPSAPGPLAAQP-APAPGPGEPTARLNPK 284
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 539-601 4.06e-05

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 47.58  E-value: 4.06e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2002298153  539 APTTPKEPAPTTPKEPAPTTPkePAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKE 601
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPP--ASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
PRK10905 PRK10905
cell division protein DamX; Validated
 529-714 4.14e-05

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 47.24  E-value: 4.14e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  529 EPAP-TTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVP---------TTPKEPASTTPKEPAPTTPKEPAPTT 598
Cdd:PRK10905    52 QPAPgTTSAEQTAGNTQQDVSLPPISSTPTQGQTPVATDGQQRVEvqgdlnnalTQPQNQQQLNNVAVNSTLPTEPATVA 131

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  599 PKEPAPTTPKEPAPTTPKEPAPTTP-KEPALTTPKEPAPTPKepeptTPKEPAPTTPKEPAPTTPKEPAPTtkkpeltip 677
Cdd:PRK10905   132 PVRNGNASRQTAKTQTAERPATTRPaRKQAVIEPKKPQATAK-----TEPKPVAQTPKRTEPAAPVASTKA--------- 197

                          170       180       190
                   ....*....|....*....|....*....|....*..
gi 2002298153  678 kepvPTTPKEPAPTTPKEPAPTTTKKPELSTPKEPTS 714
Cdd:PRK10905   198 ----PAATSTPAPKETATTAPVQTASPAQTTATPAAG 230
PRK10819 PRK10819
transport protein TonB; Provisional
 494-627 4.45e-05

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 46.60  E-value: 4.45e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  494 TPKEPESTTPKEPAPTtpkEPAPTTPKEPAPTTPKEPAPttpkEPAPTTPKE---PAPTTPKEPAPTTPKEPAPTTPKEP 570
Cdd:PRK10819    43 APAQPISVTMVAPADL---EPPQAVQPPPEPVVEPEPEP----EPIPEPPKEapvVIPKPEPKPKPKPKPKPKPVKKVEE 115

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2002298153  571 VPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPA 627
Cdd:PRK10819   116 QPKREVKPVEPRPASPFENTAPARPTSSTATAAASKPVTSVSSGPRALSRNQPQYPA 172
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 247-614 4.45e-05

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 47.65  E-value: 4.45e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  247 TTAAKPVTPKPSLAPNSETSKEASSTSNKETTVETKETTETNKQSSASKKEKTTSAKETRSAENTSAKDVEPTSTTPKNS 326
Cdd:pfam17823   64 TAAPAPVTLTKGTSAAHLNSTEVTAEHTPHGTDLSEPATREGAADGAASRALAAAASSSPSSAAQSLPAAIAALPSEAFS 143

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  327 APTTTKKPVTTTKEPVPTTTKGPEPTSKEPAPTTPKEpelTIPKEPAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPT 406
Cdd:pfam17823  144 APRAAACRANASAAPRAAIAAASAPHAASPAPRTAAS---STTAASSTTAASSAPTTAASSAPATLTPARGISTAATATG 220

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  407 TPKEPAPTTP---KEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPkEPAPTTPKEPAPNTPKEPA 483
Cdd:pfam17823  221 HPAAGTALAAvgnSSPAAGTVTAAVGTVTPAALATLAAAAGTVASAAGTINMGDPHARRL-SPAKHMPSDTMARNPAAPM 299

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  484 -PTTPKEPAPTTPKEPESTTPKEPAPT-TPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEP-----AP 556
Cdd:pfam17823  300 gAQAQGPIIQVSTDQPVHNTAGEPTPSpSNTTLEPNTPKSVASTNLAVVTTTKAQAKEPSASPVPVLHTSMIPeveatSP 379

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 2002298153  557 TTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTT 614
Cdd:pfam17823  380 TTQPSPLLPTQGAAGPGILLAPEQVATEATAGTASAGPTPRSSGDPKTLAMASCQLST 437
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 638-780 4.68e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 47.55  E-value: 4.68e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  638 PKEPEPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPELTIPKEPVPTTPKEPAPTTPKEPAPTTTKKPELSTPKEPTSTNP 717
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK 440

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2002298153  718 KEPEPTLPKEPEltlpeepepsnpETSDELIAELAEAPTPKALENNPKEPTVPTETPEVSKPE 780
Cdd:PRK07994   441 SEPAAASRARPV------------NSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKK 491
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 570-670 4.86e-05

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 47.54  E-value: 4.86e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  570 PVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPkEPAPTTPKEPALTTPKepaptPKEPEPTTPKEP 649
Cdd:COG3266    265 SAPATTSLGEQQEVSLPPAVAAQPAAAAAAQPSAVALPAAPAAAAA-AAAPAEAAAPQPTAAK-----PVVTETAAPAAP 338

                           90       100
                   ....*....|....*....|..
gi 2002298153  650 AP-TTPKEPAPTTPKEPAPTTK 670
Cdd:COG3266    339 APeAAAAAAAPAAPAVAKKLAA 360
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 400-505 4.91e-05

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 47.54  E-value: 4.91e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  400 PKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTtpkEPAPTTPKEPAPTTPKEPAPNTP 479
Cdd:COG3266    259 SQASSASAPATTSLGEQQEVSLPPAVAAQPAAAAAAQPSAVALPAAPAAAAAAA---APAEAAAPQPTAAKPVVTETAAP 335

                           90       100
                   ....*....|....*....|....*..
gi 2002298153  480 KEPAP-TTPKEPAPTTPKEPESTTPKE 505
Cdd:COG3266    336 AAPAPeAAAAAAAPAAPAVAKKLAADE 362
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 432-497 5.00e-05

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 47.37  E-value: 5.00e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2002298153  432 PKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKE 497
Cdd:PTZ00144   124 PPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRE 189
PLN03237 PLN03237
DNA topoisomerase 2; Provisional
 369-593 5.13e-05

DNA topoisomerase 2; Provisional


Pssm-ID: 215641 [Multi-domain]  Cd Length: 1465  Bit Score: 47.93  E-value: 5.13e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  369 PKEPAP--TTKK-----PAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPApttpKEPAPTTPKEPAPTTPKEPAPTTPK 441
Cdd:PLN03237  1202 PKKPAPkkTTKKaseseTTEETYGSSAMETENVAEVVKPKGRAGAKKKAPA----AAKEKEEEDEILDLKDRLAAYNLDS 1277

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  442 EPAPTTKKPEPTtPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKE-PAPTTPKEpesTTPKEPAPTTPKEPAPTTPK 520
Cdd:PLN03237  1278 APAQSAKMEETV-KAVPARRAAARKKPLASVSVISDSDDDDDDFAVEVsLAERLKKK---GGRKPAAANKKAAKPPAAAK 1353

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2002298153  521 EPAPTTPKepaPTTPKEPAPTTPKEPAPTTP-KEPAPTTPKePAPTTPKEPVPTTPKEPASTTPKEPAPTTPKE 593
Cdd:PLN03237  1354 KRGPATVQ---SGQKLLTEMLKPAEAIGISPeKKVRKMRAS-PFNKKSGSVLGRAATNKETESSENVSGSSSSE 1423
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
504-566 5.15e-05

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 47.69  E-value: 5.15e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2002298153  504 KEPAPTTPKEPAPT---TPKEPAPTTPKEPAPTTPKEPaPTTPKEPAPTTPKEPAPTTPKEPAPTT 566
Cdd:COG5373     40 AAEAASAPAEPEPEaaaAATAAAPEAAPAPVPEAPAAP-PAAAEAPAPAAAAPPAEAEPAAAPAAA 104
PRK14949 PRK14949
DNA polymerase III subunits gamma and tau; Provisional
 478-650 5.19e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237863 [Multi-domain]  Cd Length: 944  Bit Score: 47.80  E-value: 5.19e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  478 TPKEPAptTPKEPAPTTPKEPESTTPKEPAPTTPKEPAP--TTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPA 555
Cdd:PRK14949   630 SPKEGD--GKKSSADRKPKTPPSRAPPASLSKPASSPDAsqTSASFDLDPDFELATHQSVPEAALASGSAPAPPPVPDPY 707

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  556 PTTPKEPAPTTpkEPVPTTPKEPASTTPKEPAPTTPKEPAPTTpkEPAPTTPKEpAPTTPKEPAPTtpkepalTTPKEPA 635
Cdd:PRK14949   708 DRPPWEEAPEV--ASANDGPNNAAEGNLSESVEDASNSELQAV--EQQATHQPQ-VQAEAQSPAST-------TALTQTS 775

                          170
                   ....*....|....*
gi 2002298153  636 PTPKEPEPTTPKEPA 650
Cdd:PRK14949   776 SEVQDTELNLVLLSS 790
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 611-731 5.22e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 47.40  E-value: 5.22e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  611 APTTPKEPAPTTPKEPALTTPkEPAPTPKEPEPTTPKEPAPT-TPKEPAPTTPKEPAPTTKKPELT-IPKEPVPTTPKEP 688
Cdd:PRK14951   369 AAEAAAPAEKKTPARPEAAAP-AAAPVAQAAAAPAPAAAPAAaASAPAAPPAAAPPAPVAAPAAAApAAAPAAAPAAVAL 447

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 2002298153  689 APTTPKEPAPTTTKKPELSTPkEPTSTNPKEPEPTLPKEPELT 731
Cdd:PRK14951   448 APAPPAQAAPETVAIPVRVAP-EPAVASAAPAPAAAPAAARLT 489
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 446-513 5.27e-05

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 47.20  E-value: 5.27e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2002298153  446 TTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKE 513
Cdd:TIGR00601   75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
480-550 5.32e-05

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 47.69  E-value: 5.32e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2002298153  480 KEPAPTTPKEPAPTTPKEPEsttpkEPAPTTPKEPAPTTPKEPaPTTPKEPAPTTPKEPAPTTPKEPAPTT 550
Cdd:COG5373     40 AAEAASAPAEPEPEAAAAAT-----AAAPEAAPAPVPEAPAAP-PAAAEAPAPAAAAPPAEAEPAAAPAAA 104
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
536-606 5.51e-05

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 47.69  E-value: 5.51e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2002298153  536 KEPAPTTPKEPAPttpkePAPTTPKEPAPTTPKEPVPTTPKEPAsTTPKEPAPTTPKEPAPTTPKEPAPTT 606
Cdd:COG5373     40 AAEAASAPAEPEP-----EAAAAATAAAPEAAPAPVPEAPAAPP-AAAEAPAPAAAAPPAEAEPAAAPAAA 104
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
405-479 5.74e-05

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 47.49  E-value: 5.74e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2002298153  405 PTTPKEPAPTTPKEPAPTTPKepapttPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTP 479
Cdd:PRK15313   560 PDEPIIPDPVDPVIPDPVIPD------PVDPDPVDPVIPDPVIPDPVDPDPVDPEPVDPVIPDPTIPDIGQSDTP 628
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 301-434 5.78e-05

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 47.15  E-value: 5.78e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  301 SAKETRSAENTSAKDVEPTSTTPKNSAPTTTKKPVTTTKEPVPTTTkgPEPTSKEPAPTTPKEPELTIPKEPAPTTKKPA 380
Cdd:COG3266    236 AAEVLTARLVLLLLIIGSALKAPSQASSASAPATTSLGEQQEVSLP--PAVAAQPAAAAAAQPSAVALPAAPAAAAAAAA 313

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 2002298153  381 PTTPKEPAPTtpkepePTTPKESAPTTPKEPAP-TTPKEPAPTTPKEPAPTTPKE 434
Cdd:COG3266    314 PAEAAAPQPT------AAKPVVTETAAPAAPAPeAAAAAAAPAAPAVAKKLAADE 362
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
 317-471 6.11e-05

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 47.28  E-value: 6.11e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  317 EPTSTTPKNSAPTTTKKPVTTTKEPVPTTTKGPEPTSkEPAPTTPKEPELTIPKEPAPTTKKPAPTTPkePAPTTPKEPE 396
Cdd:PRK13108   294 EALEREPAELAAAAVASAASAVGPVGPGEPNQPDDVA-EAVKAEVAEVTDEVAAESVVQVADRDGEST--PAVEETSEAD 370

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2002298153  397 PTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPkEPAPTTP 471
Cdd:PRK13108   371 IEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAKPDELAVAGP-GDDPAEP 444
Mitofilin pfam09731
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ...
 340-536 6.22e-05

Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.


Pssm-ID: 430783 [Multi-domain]  Cd Length: 618  Bit Score: 47.44  E-value: 6.22e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  340 EPVPTTTKGPEPTSKEPAPTTPKEPELTiPKEPAPTTKKPAPTTPKEpaptTPKEPEpttPKESAPTTPKEPAPTTPKEP 419
Cdd:pfam09731   58 APKPKTFRPLQPSVVSAVTGESKEPKEE-KKQVKIPRQSGVSSEVAE----EEKEAT---KDAAEAKAQLPKSEQEKEKA 129

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  420 APTTPKEpaptTPKEPAPTTPKEPAPTTKKPEPT---TPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPK 496
Cdd:pfam09731  130 LEEVLKE----AISKAESATAVAKEAKDDAIQAVkahTDSLKEASDTAEISREKATDSALQKAEALAEKLKEVINLAKQS 205

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|
gi 2002298153  497 EPESTTPKEPAPttPKEPAPTTPKEPAPTTPKEPAPTTPK 536
Cdd:pfam09731  206 EEEAAPPLLDAA--PETPPKLPEHLDNVEEKVEKAQSLAK 243
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
385-448 6.25e-05

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 47.30  E-value: 6.25e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2002298153  385 KEPAPTTPKEPEPT---TPKESAPTTPKEPAPTTPKEPaPTTPKEPAPTTPKEPAPTTPKEPAPTTK 448
Cdd:COG5373     40 AAEAASAPAEPEPEaaaAATAAAPEAAPAPVPEAPAAP-PAAAEAPAPAAAAPPAEAEPAAAPAAAS 105
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 458-532 6.44e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 47.25  E-value: 6.44e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2002298153  458 PAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPA--PTTPKEPES-TTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAP 532
Cdd:PRK14954   382 PSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGarPAELPSPASaPTPEQQPPVARSAPLPPSPQASAPRNVASGKP 459
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 291-646 7.21e-05

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 47.30  E-value: 7.21e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  291 SSASKKEKTTSAKETRSAENTSAKDVEPTSTTPKNSAPTTTKKPVTttkepVPTTTK---GPEPTS----KEPAPTTP-K 362
Cdd:TIGR00927   76 SSDPPKSSSEMEGEMLAPQATVGRDEATPSIAMENTPSPPRRTAKI-----TPTTPKnnySPTAAGtervKEDTPATPsR 150

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  363 EPELTIPKEPAPTTKKPAPTTPKEPapttpkepepttpKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 442
Cdd:TIGR00927  151 ALNHYISTSGRQRVKSYTPKPRGEV-------------KSSSPTQTREKVRKYTPSPLGRMVNSYAPSTFMTMPRSHGIT 217

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  443 PAPTTKKPEPTTPKEPAPTTP-----KEPAPTTPKEPAPNTP-------KEPAPTTPKEPAP----TTPKEPESTTPKEP 506
Cdd:TIGR00927  218 PRTTVKDSEITATYKMLETNPskrtaGKTTPTPLKGMTDNTPtfltrevETDLLTSPRSVVEkntlTTPRRVESNSSTNH 297

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  507 APTTPKepapTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKepAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEP 586
Cdd:TIGR00927  298 WGLVGK----NNLTTPQGTVLEHTPATSEGQVTISIMTGSSPAETK--ASTAAWKIRNPLSRTSAPAVRIASATFRGLEK 371

                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  587 APTtpkePAPTTPKEP----APTTPK------EPAPTTPKEPAPTTPkepALTTPKEPAPTPKEPEPTTP 646
Cdd:TIGR00927  372 NPS----TAPSTPATPrvraVLTTQVhhcvvvKPAPAVPTTPSPSLT---TALFPEAPSPSPSALPPGQP 434
dnaA PRK14086
chromosomal replication initiator protein DnaA;
455-649 7.28e-05

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 47.13  E-value: 7.28e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  455 PKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPkepapttPKEPAPTTPKEPAPTt 534
Cdd:PRK14086    87 TVDPSAGEPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTAR-------PAYPAYQQRPEPGAW- 158

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  535 PKEPAPTTPKEPaPTTPKEPAP-TTPKEPAPTTPKEPVPTTPKEPASTTPK------EPAPTTPKEPAPTTPkEPAPTTP 607
Cdd:PRK14086   159 PRAADDYGWQQQ-RLGFPPRAPyASPASYAPEQERDREPYDAGRPEYDQRRrdydhpRPDWDRPRRDRTDRP-EPPPGAG 236

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|...
gi 2002298153  608 KEPAPTTPKEPAPTTPKEPAltTPKEPAPTPKEPEPTT-PKEP 649
Cdd:PRK14086   237 HVHRGGPGPPERDDAPVVPI--RPSAPGPLAAQPAPAPgPGEP 277
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
464-534 7.67e-05

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 47.30  E-value: 7.67e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2002298153  464 KEPAPTTPKEPAPntpkePAPTTPKEPAPTTPKEPESTTPKEPaPTTPKEPAPTTPKEPAPTTPKEPAPTT 534
Cdd:COG5373     40 AAEAASAPAEPEP-----EAAAAATAAAPEAAPAPVPEAPAAP-PAAAEAPAPAAAAPPAEAEPAAAPAAA 104
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
532-607 7.79e-05

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 47.10  E-value: 7.79e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2002298153  532 PTTPKEPAPTTPKEPAPTTPKepapttPKEPAPTTPKEPVPTTPkEPASTTPKEPAPTTPKEPAPTTPKEPAPTTP 607
Cdd:PRK15313   560 PDEPIIPDPVDPVIPDPVIPD------PVDPDPVDPVIPDPVIP-DPVDPDPVDPEPVDPVIPDPTIPDIGQSDTP 628
PRK10819 PRK10819
transport protein TonB; Provisional
 476-611 7.87e-05

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 45.83  E-value: 7.87e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  476 PNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKE-PAPTTPKEPAPTTPKEPAPTTPKEP 554
Cdd:PRK10819    36 HQVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPvVIPKPEPKPKPKPKPKPKPVKKVEE 115

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2002298153  555 APTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPA 611
Cdd:PRK10819   116 QPKREVKPVEPRPASPFENTAPARPTSSTATAAASKPVTSVSSGPRALSRNQPQYPA 172
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
501-631 7.91e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 47.08  E-value: 7.91e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  501 TTPKEPAPTTPKEPAPTTPKePAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPAS 580
Cdd:PRK14971   368 DASGGRGPKQHIKPVFTQPA-AAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQA 446

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 2002298153  581 TTPKEPAPTTPKEPAPTTPKEPAPTTPKEP---APTTPKEPAPTTPKEPALTTP 631
Cdd:PRK14971   447 VRPAQFKEEKKIPVSKVSSLGPSTLRPIQEkaeQATGNIKEAPTGTQKEIFTEE 500
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
585-768 8.13e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 47.15  E-value: 8.13e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  585 EPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKE 664
Cdd:PRK07003   359 EPAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADR 438

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  665 PAPTTKKPELTIPKEPVPTTPKEPAPTTPKEPAPTTTKKPELSTPKEPTStnPKEPEPTLPKEPELTLPEEPEPSNPETS 744
Cdd:PRK07003   439 GDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDA--AFEPAPRAAAPSAATPAAVPDARAPAAA 516

                          170       180
                   ....*....|....*....|....
gi 2002298153  745 DEliAELAEAPTPKALENNPKEPT 768
Cdd:PRK07003   517 SR--EDAPAAAAPPAPEARPPTPA 538
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 412-473 8.43e-05

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 46.43  E-value: 8.43e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2002298153  412 APTTPKEPAPTTPKEPAPTTPkePAPTTPKEPAPTTKKPEPTTPKEPAPTT-PKEPAPTTPKE 473
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPP--ASPASGMSAAPASAVEEKSPSEESATATaPESPSTSVPSS 142
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 315-412 8.45e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 47.19  E-value: 8.45e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  315 DVEPTSTTPkNSAPTTTKKPVTTTKEPVPTTTKGPEPTSKEPAPTTPKEPeltipkePAPTTKKPAPTTPKEPAPTTPKE 394
Cdd:PRK12270    35 DYGPGSTAA-PTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAP-------PKPAAAAAAAAAPAAPPAAAAAA 106

                           90
                   ....*....|....*...
gi 2002298153  395 PEPTTPKESAPTTPKEPA 412
Cdd:PRK12270   107 APAAAAVEDEVTPLRGAA 124
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 399-484 8.46e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 46.86  E-value: 8.46e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  399 TPKESAPTTPKEPAPttpkePAPTTPKEPAPTTPKEPAPTTPKEPAPTTkkpePTTPKEPAPTTPKEPAPTTPKEPAPNT 478
Cdd:PRK14954   383 SPAGSPDVKKKAPEP-----DLPQPDRHPGPAKPEAPGARPAELPSPAS----APTPEQQPPVARSAPLPPSPQASAPRN 453


                   ....*.
gi 2002298153  479 PKEPAP 484
Cdd:PRK14954   454 VASGKP 459
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
433-502 8.56e-05

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 46.92  E-value: 8.56e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  433 KEPAPTTPKEPAPTTkkpePTTPKEPAPTTPKEPAPTTPKEPAPnTPKEPAPTTPKEPAPTTPKEPESTT 502
Cdd:COG5373     40 AAEAASAPAEPEPEA----AAAATAAAPEAAPAPVPEAPAAPPA-AAEAPAPAAAAPPAEAEPAAAPAAA 104
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
512-582 9.40e-05

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 46.92  E-value: 9.40e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2002298153  512 KEPAPTTPKEPAPttpkePAPTTPKEPAPTTPKEPAPTTPKEPaPTTPKEPAPTTPKEPVPTTPKEPASTT 582
Cdd:COG5373     40 AAEAASAPAEPEP-----EAAAAATAAAPEAAPAPVPEAPAAP-PAAAEAPAPAAAAPPAEAEPAAAPAAA 104
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 515-577 9.44e-05

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 46.43  E-value: 9.44e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2002298153  515 APTTPKEPAPTTPKEPAPTTPkePAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKE 577
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPP--ASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 438-505 9.61e-05

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 46.43  E-value: 9.61e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2002298153  438 TTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKE 505
Cdd:TIGR00601   75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 466-540 9.86e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 46.47  E-value: 9.86e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2002298153  466 PAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAP---TTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAP 540
Cdd:PRK14954   382 PSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPasaPTPEQQPPVARSAPLPPSPQASAPRNVASGKP 459
PLN03237 PLN03237
DNA topoisomerase 2; Provisional
 294-545 9.92e-05

DNA topoisomerase 2; Provisional


Pssm-ID: 215641 [Multi-domain]  Cd Length: 1465  Bit Score: 46.78  E-value: 9.92e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  294 SKKEKTTSAKETRSAENTSAKDVEPTSTTPKNSAPTTTKKPVTTTKEPVPTTTKGPEPTSKEPAPTTPKEPELTIPKEPA 373
Cdd:PLN03237  1173 AKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESETTEETYGSSAMETENVAEVVKPKGRAGAKKKAPA 1252

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  374 PTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTpkEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPT 453
Cdd:PLN03237  1253 AAKEKEEEDEILDLKDRLAAYNLDSAPAQSAKME--ETVKAVPARRAAARKKPLASVSVISDSDDDDDDFAVEVSLAERL 1330

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  454 T----PKEPAPTTPKEPAPTTPKEPAPNTPKEPAP--TTPKEPAPTTPKEPEsttpKEPAPTTPKePAPTTPKEPAPTTP 527
Cdd:PLN03237  1331 KkkggRKPAAANKKAAKPPAAAKKRGPATVQSGQKllTEMLKPAEAIGISPE----KKVRKMRAS-PFNKKSGSVLGRAA 1405

                          250
                   ....*....|....*...
gi 2002298153  528 KEPAPTTPKEPAPTTPKE 545
Cdd:PLN03237  1406 TNKETESSENVSGSSSSE 1423
DUF4045 pfam13254
Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. ...
 501-724 1.04e-04

Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is typically between 384 and 430 amino acids in length.


Pssm-ID: 433066 [Multi-domain]  Cd Length: 415  Bit Score: 46.31  E-value: 1.04e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  501 TTPKEPAPTTPKEpAPTTPKEPAPTTPKEPAPTTPKEPA----PTTPKEPAPTT-PKEPAPT--TPKEPAPTTPKEP--- 570
Cdd:pfam13254   89 HSKDDERPSTPDE-GFVKPALPRHSRSSSALSNTGSEEDspslPTSPPSPSKTMdPKRWSPTksSWLESALNRPESPkpk 167

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  571 -VPTTPKEPA-----------STTPKEPAPTTPKEPAPTTPKEPAP---TTPKEPAPTTPKEPAPTTPKEPALTTPKE-- 633
Cdd:pfam13254  168 aQPSQPAQPAwmkelnkirqsRASVDLGRPNSFKEVTPVGLMRSPApggHSKSPSVSGISADSSPTKEEPSEEADTLStd 247

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  634 ----PAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPElTIPKEPVPTTPKEPAPTTPkePAPTTTKKPELSTP 709
Cdd:pfam13254  248 keqsPAPTSASEPPPKTKELPKDSEEPAAPSKSAEASTEKKEPD-TESSPETSSEKSAPSLLSP--VSKASIDKPLSSPD 324

                          250
                   ....*....|....*
gi 2002298153  710 KEPTSTNPKEPEPTL 724
Cdd:pfam13254  325 RDPLSPKPKPQSPPK 339
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 579-643 1.05e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 46.04  E-value: 1.05e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2002298153  579 ASTTPKEPAPTTPKEPAPTTPkePAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEP 643
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPP--ASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSSGS 144
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 482-580 1.05e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 46.60  E-value: 1.05e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  482 PAPTTPKEPAPTTPKEPESTTPKEPAPTTPkePAPTTPKEPAPTTPkePAPTTPKEPAPTTPK-EPAPTTPKEPAPTTPK 560
Cdd:PRK14959   400 PGTQGPQGTAPAAGMTPSSAAPATPAPSAA--PSPRVPWDDAPPAP--PRSGIPPRPAPRMPEaSPVPGAPDSVASASDA 475

                           90       100
                   ....*....|....*....|
gi 2002298153  561 EPAPTTPKEPVPTTPKEPAS 580
Cdd:PRK14959   476 PPTLGDPSDTAEHTPSGPRT 495
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 427-500 1.06e-04

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 46.21  E-value: 1.06e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2002298153  427 PAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPES 500
Cdd:PTZ00144   122 GAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRETRVPMS 195
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
425-494 1.09e-04

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 46.53  E-value: 1.09e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  425 KEPAPTTPKEPAPttpkEPAPTTKKPEPTTPKEPAPTTPKEPaPTTPKEPAPNTPKEPAPTTPKEPAPTT 494
Cdd:COG5373     40 AAEAASAPAEPEP----EAAAAATAAAPEAAPAPVPEAPAAP-PAAAEAPAPAAAAPPAEAEPAAAPAAA 104
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 298-489 1.09e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 46.52  E-value: 1.09e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  298 KTTSAKETRSAENTSAKDVEPtSTTPKNSAPTTTKKPVTTTKEPVPTTTKGPEPTSKEPAPTTPKEPELTiPKEPAPTTK 377
Cdd:PRK07764   616 AAPAAPAAPAAPAPAGAAAAP-AEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPA-PAPAAPAAP 693

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  378 KPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKE 457
Cdd:PRK07764   694 AGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAA 773

                          170       180       190
                   ....*....|....*....|....*....|....
gi 2002298153  458 PAPTTP--KEPAPTTPKEPAPNTPKEPAPTTPKE 489
Cdd:PRK07764   774 PPPSPPseEEEMAEDDAPSMDDEDRRDAEEVAME 807
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 319-460 1.13e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 46.63  E-value: 1.13e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  319 TSTTPKNSAPTTTKKPVTTTKEPVPTTTKGPEPTSKEPAPTTPkepeltipkepapttkKPAPTTPKEPAPTTPKEPEPT 398
Cdd:PRK14951   371 EAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASA----------------PAAPPAAAPPAPVAAPAAAAP 434

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2002298153  399 TPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPkEPAPTTPKEPAPTTKKPEPTTPKEPAP 460
Cdd:PRK14951   435 AAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAP-EPAVASAAPAPAAAPAAARLTPTEEGD 495
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 435-502 1.18e-04

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 46.21  E-value: 1.18e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2002298153  435 PAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPntPKEPAPTTPkePAPTTPKEPESTT 502
Cdd:PTZ00144   122 GAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPP--AAAKPPEPA--PAAKPPPTPVARA 185
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 500-601 1.18e-04

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 46.38  E-value: 1.18e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  500 STTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE--PAPTTPKEPAPtTPKEPAPTTPKEPVPTTPKE 577
Cdd:COG3266    264 ASAPATTSLGEQQEVSLPPAVAAQPAAAAAAQPSAVALPAAPAAAAaaAAPAEAAAPQP-TAAKPVVTETAAPAAPAPEA 342

                           90       100
                   ....*....|....*....|....
gi 2002298153  578 PASTtpkePAPTTPKEPAPTTPKE 601
Cdd:COG3266    343 AAAA----AAPAAPAVAKKLAADE 362
PRK10819 PRK10819
transport protein TonB; Provisional
 522-651 1.18e-04

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 45.06  E-value: 1.18e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  522 PAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTtPKEPVPTTPKEPasttpkEPAPTTPKEPAPTTPKE 601
Cdd:PRK10819    42 PAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPP-KEAPVVIPKPEP------KPKPKPKPKPKPVKKVE 114

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 2002298153  602 PAPTTPKEPAPTTPKEPAPTTPkePALTTPKEPAPTPKEPEPTTPKEPAP 651
Cdd:PRK10819   115 EQPKREVKPVEPRPASPFENTA--PARPTSSTATAAASKPVTSVSSGPRA 162
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 538-612 1.20e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 46.47  E-value: 1.20e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2002298153  538 PAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPV--PTTPKEPAS-TTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAP 612
Cdd:PRK14954   382 PSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGarPAELPSPASaPTPEQQPPVARSAPLPPSPQASAPRNVASGKP 459
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
456-526 1.20e-04

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 46.53  E-value: 1.20e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2002298153  456 KEPAPTTPKEPAPttpkePAPNTPKEPAPTTPKEPAPTTPKEPeSTTPKEPAPTTPKEPAPTTPKEPAPTT 526
Cdd:COG5373     40 AAEAASAPAEPEP-----EAAAAATAAAPEAAPAPVPEAPAAP-PAAAEAPAPAAAAPPAEAEPAAAPAAA 104
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 546-620 1.23e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 46.47  E-value: 1.23e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2002298153  546 PAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAP---TTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAP 620
Cdd:PRK14954   382 PSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPasaPTPEQQPPVARSAPLPPSPQASAPRNVASGKP 459
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
586-719 1.24e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 46.31  E-value: 1.24e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  586 PAPTTPKEPAPTTPKEPAPTTPkePAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEP 665
Cdd:PRK14971   370 SGGRGPKQHIKPVFTQPAAAPQ--PSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQAV 447

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 2002298153  666 APTTKKPELTIpkePVPTTPKEPAPTtpKEPAPTTTKKPELSTPKEPTSTNPKE 719
Cdd:PRK14971   448 RPAQFKEEKKI---PVSKVSSLGPST--LRPIQEKAEQATGNIKEAPTGTQKEI 496
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 493-553 1.26e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 46.04  E-value: 1.26e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2002298153  493 TTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 553
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 597-695 1.26e-04

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 46.00  E-value: 1.26e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  597 TTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPELTI 676
Cdd:COG3266    265 SAPATTSLGEQQEVSLPPAVAAQPAAAAAAQPSAVALPAAPAAAAAAAAPAEAAAPQPTAAKPVVTETAAPAAPAPEAAA 344

                           90
                   ....*....|....*....
gi 2002298153  677 PkEPVPTTPKEPAPTTPKE 695
Cdd:COG3266    345 A-AAAPAAPAVAKKLAADE 362
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 579-668 1.27e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 46.15  E-value: 1.27e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  579 ASTTPKEPAPTTPKEPAPTTPKEPAPTTPkepaPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEPAPTTPKEPA 658
Cdd:NF041121    12 AAQMGRAAAPPSPEGPAPTAASQPATPPP----PAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPPPPPPPGPAGAAPGA 87

                           90
                   ....*....|
gi 2002298153  659 PTTPKEPAPT 668
Cdd:NF041121    88 ALPVRVPAPP 97
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 366-434 1.28e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 46.04  E-value: 1.28e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2002298153  366 LTIPKEPAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 434
Cdd:TIGR00601   74 VSKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
552-622 1.33e-04

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 46.53  E-value: 1.33e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2002298153  552 KEPAPTTPKEPAPTTPKEPVPTTPkepasTTPKEPAPTTPKEPaPTTPKEPAPTTPKEPAPTTPKEPAPTT 622
Cdd:COG5373     40 AAEAASAPAEPEPEAAAAATAAAP-----EAAPAPVPEAPAAP-PAAAEAPAPAAAAPPAEAEPAAAPAAA 104
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
506-642 1.34e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 46.31  E-value: 1.34e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  506 PAPTTPKEPAPTTPKEPAPttpkepAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPttpkePASTTPKE 585
Cdd:PRK14971   370 SGGRGPKQHIKPVFTQPAA------APQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVD-----PPAAVPVN 438

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2002298153  586 PAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPE 642
Cdd:PRK14971   439 PPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIQEKAEQATGNIKEAPTGTQKE 495
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 514-588 1.35e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 46.09  E-value: 1.35e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2002298153  514 PAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAP---TTPKEPAPTTPKEPVPTTPKEPASTTPKEPAP 588
Cdd:PRK14954   382 PSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPasaPTPEQQPPVARSAPLPPSPQASAPRNVASGKP 459
rne PRK10811
ribonuclease E; Reviewed
 596-759 1.41e-04

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 46.19  E-value: 1.41e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  596 PTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTpKEPEPTTPKEPAPTTPKEPAPTTPKEP-------APT 668
Cdd:PRK10811   846 PVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPV-VEAVAEVVEEPVVVAEPQPEEVVVVETthpeviaAPV 924

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  669 TKKPELTIPKEPV--PTTPKEPAPTTPKEPAPTTTKKPELSTPKEPTSTNPKEPEPTLPKEPELTLPEEPEPSNPETSDE 746
Cdd:PRK10811   925 TEQPQVITESDVAvaQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPA 1004

                          170
                   ....*....|....*....
gi 2002298153  747 LIAEL------AEAPTPKA 759
Cdd:PRK10811  1005 QVPEAtvehnhATAPMTRA 1023
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
540-721 1.44e-04

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 45.81  E-value: 1.44e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  540 PTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTT---PKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPK 616
Cdd:pfam05539  168 PKTAVTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANqrlSSTEPVGTQGTTTSSNPEPQTEPPPSQRGPSGSP 247

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  617 EPAPTTPKEPALTTPKEPAPTPKepePTTPkePAPTTPKEPAPTTPkePAPTTKKPELTIPKePVPTTPKEPAPTTPKEP 696
Cdd:pfam05539  248 QHPPSTTSQDQSTTGDGQEHTQR---RKTP--PATSNRRSPHSTAT--PPPTTKRQETGRPT-PRPTATTQSGSSPPHSS 319

                          170       180
                   ....*....|....*....|....*
gi 2002298153  697 APTTTKKPELSTPKEPTSTNPKEPE 721
Cdd:pfam05539  320 PPGVQANPTTQNLVDCKELDPPKPN 344
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
560-626 1.45e-04

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 46.15  E-value: 1.45e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2002298153  560 KEPAPTTPKEPVPttpkePASTTPKEPAPTTPKEPAPTTPKEPaPTTPKEPAPTTPKEPAPTTPKEP 626
Cdd:COG5373     40 AAEAASAPAEPEP-----EAAAAATAAAPEAAPAPVPEAPAAP-PAAAEAPAPAAAAPPAEAEPAAA 100
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 450-527 1.46e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 46.09  E-value: 1.46e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2002298153  450 PEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTP 527
Cdd:PRK14954   382 PSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARSAPLPPSPQASAPRNVASGKP 459
PRK14949 PRK14949
DNA polymerase III subunits gamma and tau; Provisional
 342-483 1.47e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237863 [Multi-domain]  Cd Length: 944  Bit Score: 46.26  E-value: 1.47e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  342 VPTTTKGPEPTSKEPAPTTP------KEPELTIPKEPAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTpkEPAPTT 415
Cdd:PRK14949   647 TPPSRAPPASLSKPASSPDAsqtsasFDLDPDFELATHQSVPEAALASGSAPAPPPVPDPYDRPPWEEAPEV--ASANDG 724

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2002298153  416 PKEPAPTTPKEPAPTTPKEPAPTTpkEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPA 483
Cdd:PRK14949   725 PNNAAEGNLSESVEDASNSELQAV--EQQATHQPQVQAEAQSPASTTALTQTSSEVQDTELNLVLLSS 790
PRK10819 PRK10819
transport protein TonB; Provisional
 466-595 1.50e-04

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 45.06  E-value: 1.50e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  466 PAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKE-PAPTTPKEPAPTTPKEPAPTTPKEPAPTTPK 544
Cdd:PRK10819    42 PAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPvVIPKPEPKPKPKPKPKPKPVKKVEEQPKREV 121

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 2002298153  545 EPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPA 595
Cdd:PRK10819   122 KPVEPRPASPFENTAPARPTSSTATAAASKPVTSVSSGPRALSRNQPQYPA 172
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 348-476 1.59e-04

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 45.53  E-value: 1.59e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  348 GPEPTSKEPAPTTPKEPELTIPKEPAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPttpkEPAPTTPKEPAPTTPKEP 427
Cdd:NF040712   211 DARPEEVEPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQPEDEPVGPGAAPAA----EPDEATRDAGEPPAPGAA 286

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*....
gi 2002298153  428 APTTPKEPAPTTPKEPAPTTKkPEPTTPKEPAPTTPKEPAPTTPKEPAP 476
Cdd:NF040712   287 ETPEAAEPPAPAPAAPAAPAA-PEAEEPARPEPPPAPKPKRRRRRASVP 334
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 600-717 1.60e-04

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 45.61  E-value: 1.60e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  600 KEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEPAPTTPkEPAPTTPKEPAPTTKKPELTIPKE 679
Cdd:COG3266    256 KAPSQASSASAPATTSLGEQQEVSLPPAVAAQPAAAAAAQPSAVALPAAPAAAAA-AAAPAEAAAPQPTAAKPVVTETAA 334

                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 2002298153  680 PVPTTPKEPAPTTPkePAPTTTKKPELSTPKEPTSTNP 717
Cdd:COG3266    335 PAAPAPEAAAAAAA--PAAPAVAKKLAADEQWLASQPA 370
PHA03264 PHA03264
envelope glycoprotein D; Provisional
 517-622 1.63e-04

envelope glycoprotein D; Provisional


Pssm-ID: 223029 [Multi-domain]  Cd Length: 416  Bit Score: 45.77  E-value: 1.63e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  517 TTPKEPAPTTPKEPAPTtPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAP 596
Cdd:PHA03264   253 VVPPYFEESKGYEPPPA-PSGGSPAPPGDDRPEAKPEPGPVEDGAPGRETGGEGEGPEPAGRDGAAGGEPKPGPPRPAPD 331

                           90       100
                   ....*....|....*....|....*..
gi 2002298153  597 TTPKEPAPTTPKEP-APTTPKEPAPTT 622
Cdd:PHA03264   332 ADRPEGWPSLEAITfPPPTPATPAVPR 358
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
403-528 1.66e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 45.92  E-value: 1.66e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  403 SAPTTPKEPAPTTPKEPAPTTPkePAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEP 482
Cdd:PRK14971   370 SGGRGPKQHIKPVFTQPAAAPQ--PSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQAV 447

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 2002298153  483 APTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPK 528
Cdd:PRK14971   448 RPAQFKEEKKIPVSKVSSLGPSTLRPIQEKAEQATGNIKEAPTGTQ 493
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 546-656 1.75e-04

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 45.61  E-value: 1.75e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  546 PAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPkEPAPTTPKEPAPttpkepaptTPKEPAPTTPKE 625
Cdd:COG3266    265 SAPATTSLGEQQEVSLPPAVAAQPAAAAAAQPSAVALPAAPAAAAA-AAAPAEAAAPQP---------TAAKPVVTETAA 334

                           90       100       110
                   ....*....|....*....|....*....|.
gi 2002298153  626 PALTTPKEPAPTPKepePTTPKEPAPTTPKE 656
Cdd:COG3266    335 PAAPAPEAAAAAAA---PAAPAVAKKLAADE 362
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
556-631 1.76e-04

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 45.95  E-value: 1.76e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2002298153  556 PTTPKEPAPTTPKEPVPTTPKepasttPKEPAPTTPKEPAPTTPkEPAPTTPKEPAPTTPKEPAPTTPKEPALTTP 631
Cdd:PRK15313   560 PDEPIIPDPVDPVIPDPVIPD------PVDPDPVDPVIPDPVIP-DPVDPDPVDPEPVDPVIPDPTIPDIGQSDTP 628
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
505-570 1.81e-04

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 45.76  E-value: 1.81e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2002298153  505 EPAPTTPKEPAPTTPKEPAPTTPkePAPTTPKEPAPTTPKEPaPTTPKEPAPTTPKEPAPTTPKEP 570
Cdd:COG5373     38 AEAAEAASAPAEPEPEAAAAATA--AAPEAAPAPVPEAPAAP-PAAAEAPAPAAAAPPAEAEPAAA 100
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 427-509 1.81e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 45.76  E-value: 1.81e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  427 PAPTTPKEPAPTTPKEPAPTtkkPEPTTPKEPAPTTPKEPAPTTPKEPAPnTPKEPAPTTPKEPAPTTPKEPESTTPKEP 506
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATP---PPPAAPPSPPGDPPEPPAPEPAPLPAP-YPGSLAPPPPPPPGPAGAAPGAALPVRVP 94


                   ...
gi 2002298153  507 APT 509
Cdd:NF041121    95 APP 97
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
472-542 1.84e-04

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 45.76  E-value: 1.84e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2002298153  472 KEPAPNTPKEPAPTTPKEPAPTTPkepesTTPKEPAPTTPKEPaPTTPKEPAPTTPKEPAPTTPKEPAPTT 542
Cdd:COG5373     40 AAEAASAPAEPEPEAAAAATAAAP-----EAAPAPVPEAPAAP-PAAAEAPAPAAAAPPAEAEPAAAPAAA 104
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
422-552 1.84e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 45.92  E-value: 1.84e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  422 TTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPkePAPTTPKEPAPTTpkePEST 501
Cdd:PRK14971   368 DASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPP--TVSVDPPAAVPVN---PPST 442

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 2002298153  502 TPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPK 552
Cdd:PRK14971   443 APQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIQEKAEQATGNIKEAPTGTQ 493
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 485-545 1.89e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 45.27  E-value: 1.89e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2002298153  485 TTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 545
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 586-667 1.95e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 45.70  E-value: 1.95e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  586 PAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPApttpKEPALTTPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEP 665
Cdd:PRK14954   382 PSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPG----ARPAELPSPASAPTPEQQPPVARSAPLPPSPQASAPRNVASG 457


                   ..
gi 2002298153  666 AP 667
Cdd:PRK14954   458 KP 459
PRK11633 PRK11633
cell division protein DedD; Provisional
 487-597 2.05e-04

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 44.22  E-value: 2.05e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  487 PKEPAPTTPKEPESTTPKEPA-PTTPKEPAPTTPKEP-APTTPKEPAPTTPkePAPTTPKEPAPTTPKEPAPTTPKEPAP 564
Cdd:PRK11633    42 PLVPKPGDRDEPDMMPAATQAlPTQPPEGAAEAVRAGdAAAPSLDPATVAP--PNTPVEPEPAPVEPPKPKPVEKPKPKP 119

                           90       100       110
                   ....*....|....*....|....*....|...
gi 2002298153  565 TTPKEPvpttpkEPASTTPKEPAPTTPKEPAPT 597
Cdd:PRK11633   120 KPQQKV------EAPPAPKPEPKPVVEEKAAPT 146
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 563-625 2.06e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 45.27  E-value: 2.06e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2002298153  563 APTTPKEPVPTTPKEPASTTPkePAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 625
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPP--ASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
488-558 2.09e-04

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 45.76  E-value: 2.09e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2002298153  488 KEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPaPTTPKEPAPTTPKEPAPTTPKEPAPTT 558
Cdd:COG5373     35 AELAEAAEAASAPAEPEPEAAAAATAAAPEAAPAPVPEAPAAP-PAAAEAPAPAAAAPPAEAEPAAAPAAA 104
PHA03264 PHA03264
envelope glycoprotein D; Provisional
 448-558 2.09e-04

envelope glycoprotein D; Provisional


Pssm-ID: 223029 [Multi-domain]  Cd Length: 416  Bit Score: 45.38  E-value: 2.09e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  448 KKPEPTTPKEPAPTTPKEPAPTtPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTP 527
Cdd:PHA03264   248 MRHGGVVPPYFEESKGYEPPPA-PSGGSPAPPGDDRPEAKPEPGPVEDGAPGRETGGEGEGPEPAGRDGAAGGEPKPGPP 326

                           90       100       110
                   ....*....|....*....|....*....|..
gi 2002298153  528 KEPAPTTPKEPAPTTPKEP-APTTPKEPAPTT 558
Cdd:PHA03264   327 RPAPDADRPEGWPSLEAITfPPPTPATPAVPR 358
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 435-565 2.19e-04

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 45.49  E-value: 2.19e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  435 PAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPA--PTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPK 512
Cdd:PHA03269    25 NIPIPELHTSAATQKPDPAPAPHQAASRAPDPAvaPTSAASRKPDLAQAPTPAASEKFDPAPAPHQAASRAPDPAVAPQL 104

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 2002298153  513 EPAPTtpkePAPTTPKEPAPTTPKEPApTTPKEPAPTTPkEPAPTTPKEPAPT 565
Cdd:PHA03269   105 AAAPK----PDAAEAFTSAAQAHEAPA-DAGTSAASKKP-DPAAHTQHSPPPF 151
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
476-543 2.21e-04

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 45.56  E-value: 2.21e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  476 PNTPKEPAPTTPKEPAPTTPK--EPESTTPKEPAPTTPkEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTP 543
Cdd:PRK15313   560 PDEPIIPDPVDPVIPDPVIPDpvDPDPVDPVIPDPVIP-DPVDPDPVDPEPVDPVIPDPTIPDIGQSDTP 628
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 554-664 2.27e-04

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 45.23  E-value: 2.27e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  554 PAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPkEPAPTTPKEPAPTtpkepaPTTPKEPALTTPKE 633
Cdd:COG3266    265 SAPATTSLGEQQEVSLPPAVAAQPAAAAAAQPSAVALPAAPAAAAA-AAAPAEAAAPQPT------AAKPVVTETAAPAA 337

                           90       100       110
                   ....*....|....*....|....*....|.
gi 2002298153  634 PAPTPKEPepttpkEPAPTTPKEPAPTTPKE 664
Cdd:COG3266    338 PAPEAAAA------AAAPAAPAVAKKLAADE 362
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 450-533 2.32e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 45.38  E-value: 2.32e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  450 PEPTTPKEPAPTTPKEPAPttpkePAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 529
Cdd:NF041121    19 AAPPSPEGPAPTAASQPAT-----PPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPPPPPPPGPAGAAPGAALPVRV 93


                   ....
gi 2002298153  530 PAPT 533
Cdd:NF041121    94 PAPP 97
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
 362-504 2.34e-04

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 468201 [Multi-domain]  Cd Length: 684  Bit Score: 45.39  E-value: 2.34e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  362 KEPELTIPKEPAPTTKKPAPTtPKEPAPTTPKEPEPTTpKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPttpk 441
Cdd:NF033838   351 KEAELELVKEEAKEPRNEEKI-KQAKAKVESKKAEATR-LEKIKTDRKKAEEEAKRKAAEEDKVKEKPAEQPQPAP---- 424

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2002298153  442 epAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEP-APNTPKEPAPTTPKEPaPTTPKEPESTTPK 504
Cdd:NF033838   425 --APQPEKPAPKPEKPAEQPKAEKPADQQAEEDyARRSEEEYNRLTQQQP-PKTEKPAQPSTPK 485
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 368-434 2.35e-04

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 45.06  E-value: 2.35e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2002298153  368 IPKEPAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 434
Cdd:PTZ00144   123 APPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRE 189
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
545-614 2.37e-04

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 45.38  E-value: 2.37e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  545 EPAPTTPKEPAPTTPKEPAPTTPKEPVPTTpkEPASTTPKEPaPTTPKEPAPTTPKEPAPTTPKEPAPTT 614
Cdd:COG5373     38 AEAAEAASAPAEPEPEAAAAATAAAPEAAP--APVPEAPAAP-PAAAEAPAPAAAAPPAEAEPAAAPAAA 104
PRK10819 PRK10819
transport protein TonB; Provisional
 506-635 2.39e-04

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 44.29  E-value: 2.39e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  506 PAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE-PAPTTPKEPAPTTPKEPVPTTPKEPASTTPK 584
Cdd:PRK10819    42 PAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPvVIPKPEPKPKPKPKPKPKPVKKVEEQPKREV 121

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 2002298153  585 EPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPA 635
Cdd:PRK10819   122 KPVEPRPASPFENTAPARPTSSTATAAASKPVTSVSSGPRALSRNQPQYPA 172
PRK10819 PRK10819
transport protein TonB; Provisional
 371-476 2.42e-04

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 44.29  E-value: 2.42e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  371 EPAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESA-PTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKK 449
Cdd:PRK10819    58 LEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVViPKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPRPASPFENTAP 137

                           90       100
                   ....*....|....*....|....*..
gi 2002298153  450 PEPTTPkePAPTTPKEPAPTTPKEPAP 476
Cdd:PRK10819   138 ARPTSS--TATAAASKPVTSVSSGPRA 162
PRK12373 PRK12373
NADH-quinone oxidoreductase subunit E;
342-497 2.43e-04

NADH-quinone oxidoreductase subunit E;


Pssm-ID: 237082 [Multi-domain]  Cd Length: 400  Bit Score: 45.18  E-value: 2.43e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  342 VPTTTKGPEPTSKEPAPttpkEPELTIPKEPAPTTKKPAPTTPKEPAPTTPKEPEpTTPKESAPTTPKEPAPTTPKEPAP 421
Cdd:PRK12373   174 GPVVKPGPQIGRYASEP----AGGLTSLTEEAGKARYNASKALAEDIGDTVKRID-GTEVPLLAPWQGDAAPVPPSEAAR 248

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2002298153  422 TTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKE 497
Cdd:PRK12373   249 PKSADAETNAALKTPATAPKAAAKNAKAPEAQPVSGTAAAEPAPKEAAKAAAAAAKPALEDKPRPLGIARPGGADD 324
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
524-599 2.44e-04

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 45.56  E-value: 2.44e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2002298153  524 PTTPKEPAPTTPKEPAPTTPKepapttPKEPAPTTPKEPAPTTPkEPVPTTPKEPASTTPKEPAPTTPKEPAPTTP 599
Cdd:PRK15313   560 PDEPIIPDPVDPVIPDPVIPD------PVDPDPVDPVIPDPVIP-DPVDPDPVDPEPVDPVIPDPTIPDIGQSDTP 628
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 562-633 2.47e-04

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 45.06  E-value: 2.47e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2002298153  562 PAPTTPKEPVPTTPKEPASTTPKEPAPttpkEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKE 633
Cdd:PTZ00144   122 GAPPAAAPAAAAAAKAEKTTPEKPKAA----APTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRE 189
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 466-549 2.48e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 44.99  E-value: 2.48e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  466 PAPTTPKEPAPNTPKEPAPTTPkepaPTTPKEPESTTPKEPAPTTPKEPAPtTPKEPAPTTPKEPAPTTPKEPAPTTPKE 545
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATPPP----PAAPPSPPGDPPEPPAPEPAPLPAP-YPGSLAPPPPPPPGPAGAAPGAALPVRV 93


                   ....
gi 2002298153  546 PAPT 549
Cdd:NF041121    94 PAPP 97
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 555-778 2.50e-04

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 45.30  E-value: 2.50e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  555 APTTPKEPAPTT-PKEPVPttPKEPASTTPKEPAPTTPKEPAPTTPKEPapTTPKEPAPTTPKEPAPTTPKEPaLTTPKE 633
Cdd:PLN03209   311 APLTPMEELLAKiPSQRVP--PKESDAADGPKPVPTKPVTPEAPSPPIE--EEPPQPKAVVPRPLSPYTAYED-LKPPTS 385

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  634 PAPTPkepePTTPKEPAPTTPKEPAPTTPKePAPTTKKPELTIPKEPVPTTPKEPAPTTP-------KEP-APTTTKKPE 705
Cdd:PLN03209   386 PIPTP----PSSSPASSKSVDAVAKPAEPD-VVPSPGSASNVPEVEPAQVEAKKTRPLSPyaryedlKPPtSPSPTAPTG 460

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2002298153  706 LSTPKEPTSTNPKEPEPTLPKEPELTLPEEPEPSNPETSDELIAELAEAPTPKALENNPKEPtvPTETPEVSK 778
Cdd:PLN03209   461 VSPSVSSTSSVPAVPDTAPATAATDAAAPPPANMRPLSPYAVYDDLKPPTSPSPAAPVGKVA--PSSTNEVVK 531
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
 343-511 2.50e-04

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 44.97  E-value: 2.50e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  343 PTTTKGPEPTSKEPAPTTPKEPELTipkEPAPTTKKPAPTTPKEPA---------PTTPKEPEPTTPKESAPTTPKEPAP 413
Cdd:PRK13108   282 PGALRGSEYVVDEALEREPAELAAA---AVASAASAVGPVGPGEPNqpddvaeavKAEVAEVTDEVAAESVVQVADRDGE 358

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  414 TTPK--EPAPTTPKEPAPTTPKEPAPTTPKEPApTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPntpkEPAPTTPKEPA 491
Cdd:PRK13108   359 STPAveETSEADIEREQPGDLAGQAPAAHQVDA-EAASAAPEEPAALASEAHDETEPEVPEKAAP----IPDPAKPDELA 433

                          170       180
                   ....*....|....*....|
gi 2002298153  492 PTTPkepesttpkEPAPTTP 511
Cdd:PRK13108   434 VAGP---------GDDPAEP 444
dnaA PRK14086
chromosomal replication initiator protein DnaA;
466-665 2.57e-04

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 45.20  E-value: 2.57e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  466 PAPTTPKEPAPNTPKEPAPTTPKEPAPttpkePESTTPKEPAPTTPKEPAPTTPKEPAPTT-PKEPAPTTPKEPAPTtPK 544
Cdd:PRK14086    87 TVDPSAGEPAPPPPHARRTSEPELPRP-----GRRPYEGYGGPRADDRPPGLPRQDQLPTArPAYPAYQQRPEPGAW-PR 160

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  545 EPAPTTPKEPaPTTPKEPAPTTPkepvPTTPKEPASTTPKEPAPTTPKEPAPTTPKE-PAPTTPKEPAPTTPKEPAPTTP 623
Cdd:PRK14086   161 AADDYGWQQQ-RLGFPPRAPYAS----PASYAPEQERDREPYDAGRPEYDQRRRDYDhPRPDWDRPRRDRTDRPEPPPGA 235

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|...
gi 2002298153  624 KEPALTTPKEPAPTPKEPEPTTPKEPAPtTPKEPAPTT-PKEP 665
Cdd:PRK14086   236 GHVHRGGPGPPERDDAPVVPIRPSAPGP-LAAQPAPAPgPGEP 277
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
628-700 2.58e-04

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 45.38  E-value: 2.58e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2002298153  628 LTTPKEPAPTPKEPEPttpkePAPTTPKEPAPTTPKEPAPTTKKPELTIPKEPVPTTPKEPAPTTPKEPAPTT 700
Cdd:COG5373     37 LAEAAEAASAPAEPEP-----EAAAAATAAAPEAAPAPVPEAPAAPPAAAEAPAPAAAAPPAEAEPAAAPAAA 104
PRK10819 PRK10819
transport protein TonB; Provisional
 374-507 2.62e-04

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 44.29  E-value: 2.62e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  374 PTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKE-PAPTTPKEPAPTTPKEPAPTTKKPE- 451
Cdd:PRK10819    37 QVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPvVIPKPEPKPKPKPKPKPKPVKKVEEq 116

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 2002298153  452 PTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPA 507
Cdd:PRK10819   117 PKREVKPVEPRPASPFENTAPARPTSSTATAAASKPVTSVSSGPRALSRNQPQYPA 172
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 610-691 2.64e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 44.99  E-value: 2.64e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  610 PAPTTPKEPAPTTPKEPALTTPkepaPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPELTIPKEPVPTTP-KEP 688
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATPPP----PAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPPPPPPPGPAGAAPGAALPvRVP 94


                   ...
gi 2002298153  689 APT 691
Cdd:NF041121    95 APP 97
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
499-567 2.68e-04

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 45.56  E-value: 2.68e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2002298153  499 ESTTPKEPAPTTPKEPAPTTPK--EPAPTTPKEPAPTTPkEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTP 567
Cdd:PRK15313   559 EPDEPIIPDPVDPVIPDPVIPDpvDPDPVDPVIPDPVIP-DPVDPDPVDPEPVDPVIPDPTIPDIGQSDTP 628
PRK08691 PRK08691
DNA polymerase III subunits gamma and tau; Validated
 343-516 2.71e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236333 [Multi-domain]  Cd Length: 709  Bit Score: 45.47  E-value: 2.71e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  343 PTTTKGPEPTSKEPAPTTPKEPELTIPKEPAPTTKKPAP------TTPKEPAPTTPKEPEPTTPKES----APTTPKEPA 412
Cdd:PRK08691   388 ETAAKKPQPRPEAETAQTPVQTASAAAMPSEGKTAGPVSnqenndVPPWEDAPDEAQTAAGTAQTSAksiqTASEAETPP 467

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  413 PT--TPKEPAPTTPKEPAPTTPKE-PAPTTP-KEPAPT-TKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPApttp 487
Cdd:PRK08691   468 ENqvSKNKAADNETDAPLSEVPSEnPIQATPnDEAVETeTFAHEAPAEPFYGYGFPDNDCPPEDGAEIPPPDWEHA---- 543

                          170       180       190
                   ....*....|....*....|....*....|...
gi 2002298153  488 kepAPTTPKEPESTTPKEPA----PTTPKEPAP 516
Cdd:PRK08691   544 ---APADTAGGGADEEAEAGgiggNNTPSAPPP 573
PRK10905 PRK10905
cell division protein DamX; Validated
 505-672 2.73e-04

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 44.54  E-value: 2.73e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  505 EPAP-TTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE---------PAPTTPKEPAPTTPKEPAPTTPKEPVPTT 574
Cdd:PRK10905    52 QPAPgTTSAEQTAGNTQQDVSLPPISSTPTQGQTPVATDGQQrvevqgdlnNALTQPQNQQQLNNVAVNSTLPTEPATVA 131

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  575 PKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEPAPTTP 654
Cdd:PRK10905   132 PVRNGNASRQTAKTQTAERPATTRPARKQAVIEPKKPQATAKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPAPKETAT 211

                          170
                   ....*....|....*...
gi 2002298153  655 KEPAPTTpkEPAPTTKKP 672
Cdd:PRK10905   212 TAPVQTA--SPAQTTATP 227
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 306-445 2.73e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 45.24  E-value: 2.73e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  306 RSAENTSAKDVEPTSTTPknSAPTTTKKPVTTTKEPVPTTTKGPEPTSKEPAPTTPKEPELTIP----------KEPAPT 375
Cdd:PRK07994   360 HPAAPLPEPEVPPQSAAP--AASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQllaarqqlqrAQGATK 437

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2002298153  376 TKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTP---KEPAPTTPKEPAPTTPKEPAP 445
Cdd:PRK07994   438 AKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPvevKKEPVATPKALKKALEHEKTP 510
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
474-608 2.77e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 45.15  E-value: 2.77e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  474 PAPNTPKEPAPTTPKEPAPTTPkePESTTPKEPAPTTPKEPAPTTPKEPAPTtpkePAPTTPkePAPTTPKEPAPTTpke 553
Cdd:PRK14971   370 SGGRGPKQHIKPVFTQPAAAPQ--PSAAAAASPSPSQSSAAAQPSAPQSATQ----PAGTPP--TVSVDPPAAVPVN--- 438

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 2002298153  554 PAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPK 608
Cdd:PRK14971   439 PPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIQEKAEQATGNIKEAPTGTQ 493
PHA03264 PHA03264
envelope glycoprotein D; Provisional
 430-534 2.79e-04

envelope glycoprotein D; Provisional


Pssm-ID: 223029 [Multi-domain]  Cd Length: 416  Bit Score: 45.00  E-value: 2.79e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  430 TTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPT 509
Cdd:PHA03264   253 VVPPYFEESKGYEPPPAPSGGSPAPPGDDRPEAKPEPGPVEDGAPGRETGGEGEGPEPAGRDGAAGGEPKPGPPRPAPDA 332

                           90       100
                   ....*....|....*....|....*.
gi 2002298153  510 TPKEPAPTTPKEP-APTTPKEPAPTT 534
Cdd:PHA03264   333 DRPEGWPSLEAITfPPPTPATPAVPR 358
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 566-633 2.80e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 44.89  E-value: 2.80e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2002298153  566 TPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKE 633
Cdd:TIGR00601   75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
449-576 2.84e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 45.15  E-value: 2.84e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  449 KPEPTTPKEPAPTTPKEPAPTTPkepaPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAP-TTPKEPAPTTP 527
Cdd:PRK14971   369 ASGGRGPKQHIKPVFTQPAAAPQ----PSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPaAVPVNPPSTAP 444

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*....
gi 2002298153  528 KEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPK 576
Cdd:PRK14971   445 QAVRPAQFKEEKKIPVSKVSSLGPSTLRPIQEKAEQATGNIKEAPTGTQ 493
PRK11633 PRK11633
cell division protein DedD; Provisional
 529-613 2.85e-04

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 43.84  E-value: 2.85e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  529 EPAPTTPKEPAPTTPKEP-APTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTP 607
Cdd:PRK11633    61 QALPTQPPEGAAEAVRAGdAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPKPVVE 140


                   ....*.
gi 2002298153  608 KEPAPT 613
Cdd:PRK11633   141 EKAAPT 146
PRK14949 PRK14949
DNA polymerase III subunits gamma and tau; Provisional
 512-666 2.88e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237863 [Multi-domain]  Cd Length: 944  Bit Score: 45.49  E-value: 2.88e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  512 KEPAPTTpKEPAPTTPKEPAP----TTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPA 587
Cdd:PRK14949   637 KKSSADR-KPKTPPSRAPPASlskpASSPDASQTSASFDLDPDFELATHQSVPEAALASGSAPAPPPVPDPYDRPPWEEA 715

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2002298153  588 PTTpkEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTpkEPALTTPKEpapTPKEPEPTTPKEPAPTTPKEPAPTTPKEPA 666
Cdd:PRK14949   716 PEV--ASANDGPNNAAEGNLSESVEDASNSELQAV--EQQATHQPQ---VQAEAQSPASTTALTQTSSEVQDTELNLVL 787
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 654-719 2.92e-04

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 44.67  E-value: 2.92e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2002298153  654 PKEPAPTTPKEPAPTTKKPELTIPKEPVPTTPKEPAPTTPKEPAPTTTKKPELSTPKEPTSTNPKE 719
Cdd:PTZ00144   124 PPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRE 189
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 628-695 2.92e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 44.89  E-value: 2.92e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2002298153  628 LTTPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPELTIPKEPVPTT-PKEPAPTTPKE 695
Cdd:TIGR00601   74 VSKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATaPESPSTSVPSS 142
PRK12757 PRK12757
cell division protein FtsN; Provisional
 494-563 2.96e-04

cell division protein FtsN; Provisional


Pssm-ID: 237191 [Multi-domain]  Cd Length: 256  Bit Score: 43.88  E-value: 2.96e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  494 TPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPA 563
Cdd:PRK12757   111 TPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVEAEKE 180
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
484-559 2.97e-04

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 45.18  E-value: 2.97e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2002298153  484 PTTPKEPAPTTPKEPESTTPKepapttPKEPAPTTPKEPAPTTPkEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTP 559
Cdd:PRK15313   560 PDEPIIPDPVDPVIPDPVIPD------PVDPDPVDPVIPDPVIP-DPVDPDPVDPEPVDPVIPDPTIPDIGQSDTP 628
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 407-549 3.01e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 45.46  E-value: 3.01e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  407 TPKEPAPTTPKEPApTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTT 486
Cdd:PRK10263   739 GPHEPLFTPIVEPV-QQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQY 817

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2002298153  487 PKEPAPTTPkEPESTTPKEPAPTTPKE----PAPTTPKEPAPTT-PKEPAPTTPKEPAPTTPKEPAPT 549
Cdd:PRK10263   818 QQPQQPVAP-QPQYQQPQQPVAPQPQDtllhPLLMRNGDSRPLHkPTTPLPSLDLLTPPPSEVEPVDT 884
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 482-565 3.03e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 44.99  E-value: 3.03e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  482 PAPTTPKEPAPTTPKEPESTTPkepaPTTPKEPAPTTPKEPAPTTPKEPAPtTPKEPAPTTPKEPAPTTPKEPAPTTPKE 561
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATPPP----PAAPPSPPGDPPEPPAPEPAPLPAP-YPGSLAPPPPPPPGPAGAAPGAALPVRV 93


                   ....
gi 2002298153  562 PAPT 565
Cdd:NF041121    94 PAPP 97
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
 576-647 3.13e-04

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 468201 [Multi-domain]  Cd Length: 684  Bit Score: 45.00  E-value: 3.13e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2002298153  576 KEPASTTPKePAPTT-PKEPAPTTPKEPAPTTPKEPAPTTPKEP-APTTPKEPALTTPKEPAPTPKEPEPTTPK 647
Cdd:NF033838   413 KEKPAEQPQ-PAPAPqPEKPAPKPEKPAEQPKAEKPADQQAEEDyARRSEEEYNRLTQQQPPKTEKPAQPSTPK 485
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
576-643 3.24e-04

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 44.99  E-value: 3.24e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2002298153  576 KEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTT----PKEPALTTPKEPAPTPKEPEP 643
Cdd:COG5373     35 AELAEAAEAASAPAEPEPEAAAAATAAAPEAAPAPVPEAPAAPPAAAeapaPAAAAPPAEAEPAAAPAAASS 106
PBP1 COG5180
PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification]; ...
 361-759 3.26e-04

PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification];


Pssm-ID: 444064 [Multi-domain]  Cd Length: 548  Bit Score: 45.05  E-value: 3.26e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  361 PKEPELTIPKEPAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTT---------PKEPAPTT 431
Cdd:COG5180     28 PELWAAANNDAVSQGDRSALASSPTRPYARKIFEPLDIKLALGKPQLPSVAEPEAYLDPAPPKsspdtpeeqLGAPAGDL 107

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  432 PKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPttpkEPESTTPKEPAPTTP 511
Cdd:COG5180    108 LVLPAAKTPELAAGALPAPAAAAALPKAKVTREATSASAGVALAAALLQRSDPILAKDPDG----DSASTLPPPAEKLDK 183

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  512 KEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE-PAPTTPKEPAPTTPKEPAPTTPKEPV-PTTPKEPASTTPKEPAPT 589
Cdd:COG5180    184 VLTEPRDALKDSPEKLDRPKVEVKDEAQEEPPDLtGGADHPRPEAASSPKVDPPSTSEARSrPATVDAQPEMRPPADAKE 263

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  590 TPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPttpkEPALTTPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAPTT 669
Cdd:COG5180    264 RRRAAIGDTPAAEPPGLPVLEAGSEPQSDAP----EAETARPIDVKGVASAPPATRPVRPPGGARDPGTPRPGQPTERPA 339

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  670 KKPELTIPKEPVPTTPKEPAPTTPKEPAPTTTKKPELST-PKEPTSTNPKEPEPTLPKEPELTLPEEPEPSNPETSDELI 748
Cdd:COG5180    340 GVPEAASDAGQPPSAYPPAEEAVPGKPLEQGAPRPGSSGgDGAPFQPPNGAPQPGLGRRGAPGPPMGAGDLVQAALDGGG 419

                          410
                   ....*....|.
gi 2002298153  749 AELAEAPTPKA 759
Cdd:COG5180    420 RETASLGGAAG 430
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 649-729 3.27e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 45.27  E-value: 3.27e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  649 PAPTTPKEPAPTTPKEPAPTTkkpeltiPKEPVPTTPKEPAPTTPKEPAPTTTKKPELSTPKEPTSTNPKEPEPTLPKEP 728
Cdd:PRK12270    38 PGSTAAPTAAAAAAAAAASAP-------AAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAA 110


                   .
gi 2002298153  729 E 729
Cdd:PRK12270   111 A 111
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 546-633 3.27e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 44.61  E-value: 3.27e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  546 PAPTTPKEPAPTTPKEPAPTTP---KEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPtt 622
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATPPPpaaPPSPPGDPPEPPAPEPAPLPAPYPGSLAPPPPPPPGPAGAAPGAALPVRVPAP-- 96

                           90
                   ....*....|.
gi 2002298153  623 pkePALTTPKE 633
Cdd:NF041121    97 ---PALPNPLE 104
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 479-545 3.32e-04

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 44.67  E-value: 3.32e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2002298153  479 PKEPAPTTPKEPAPTTPkEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 545
Cdd:PTZ00144   124 PPAAAPAAAAAAKAEKT-TPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRE 189
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 554-638 3.33e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 44.61  E-value: 3.33e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  554 PAPTTPKEPAPTTPkePVPTTPKEPASTtpkEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKE 633
Cdd:NF041121    19 AAPPSPEGPAPTAA--SQPATPPPPAAP---PSPPGDPPEPPAPEPAPLPAPYPGSLAPPPPPPPGPAGAAPGAALPVRV 93


                   ....*
gi 2002298153  634 PAPTP 638
Cdd:NF041121    94 PAPPA 98
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
458-596 3.37e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 44.77  E-value: 3.37e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  458 PAPTTPKEPAPTTPKEPAPntpkepAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPkePAPTTPKEPAPTTPKE 537
Cdd:PRK14971   370 SGGRGPKQHIKPVFTQPAA------APQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPP--TVSVDPPAAVPVNPPS 441

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  538 PAPttpkepaPTTPKEPAPTTPKEPAPTTPKEPVPTT-PKEPASTTPKEPAPTTPKEPAP 596
Cdd:PRK14971   442 TAP-------QAVRPAQFKEEKKIPVSKVSSLGPSTLrPIQEKAEQATGNIKEAPTGTQK 494
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 388-452 3.38e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 44.50  E-value: 3.38e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2002298153  388 APTTPKEPEPTTPKESAPTTPkePAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEP 452
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPP--ASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSSGS 144
PHA03369 PHA03369
capsid maturational protease; Provisional
 301-602 3.46e-04

capsid maturational protease; Provisional


Pssm-ID: 223061 [Multi-domain]  Cd Length: 663  Bit Score: 44.99  E-value: 3.46e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  301 SAKETRSAENTSAKDVEPTSTTPKNSAPTTTKKPVTTTKEPVPTTTKGPEPTSK-EPAPTTPKEPELTIPKEPAPttkkp 379
Cdd:PHA03369   349 KTASLTAPSRVLAAAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPARSPMTAyPPVPQFCGDPGLVSPYNPQS----- 423

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  380 aPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEpaPTTPKEPAPTTKKPEPTTPKEPA 459
Cdd:PHA03369   424 -PGTSYGPEPVGPVPPQPTNPYVMPISMANMVYPGHPQEHGHERKRKRGGELKEE--LIETLKLVKKLKEEQESLAKELE 500

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  460 PTTPKEPAPTTPKEPAPNTPKEPAPTTPkEPAPTTPKEPESTtpKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPA 539
Cdd:PHA03369   501 ATAHKSEIKKIAESEFKNAGAKTAAANI-EPNCSADAAAPAT--KRARPETKTELEAVVRFPYQIRNMESPAFVHSFTST 577

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2002298153  540 PTTPKEPAPTTPKEP---APTTPKEPAPTTPKEPVPTTPKEP--ASTTPKEPAPTTPKEPAPTTPKEP 602
Cdd:PHA03369   578 TLAAAAGQGSDTAEAlagAIETLLTQASAQPAGLSLPAPAVPvnASTPASTPPPLAPQEPPQPGTSAP 645
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 341-420 3.47e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 45.27  E-value: 3.47e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  341 PVPTTTKGPEPTSKEPAPTTPKEPELTIPKEPAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPA 420
Cdd:PRK12270    45 TAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTPLRGAA 124
PRK10819 PRK10819
transport protein TonB; Provisional
 349-460 3.47e-04

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 43.90  E-value: 3.47e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  349 PEPTSKEPAPTTPKEPELTIPKEPAPTTKKPAPTTPKEPAPTTPKEPEPtTPKESAPTTPKepapttpKEPAPTTPKEPA 428
Cdd:PRK10819    59 EPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKP-KPVKKVEEQPK-------REVKPVEPRPAS 130

                           90       100       110
                   ....*....|....*....|....*....|..
gi 2002298153  429 PTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAP 460
Cdd:PRK10819   131 PFENTAPARPTSSTATAAASKPVTSVSSGPRA 162
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
243-467 3.53e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 44.87  E-value: 3.53e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  243 ASPKTTAAKPVTPKPSLAPNSETSKEASSTSNKETTVETKETTETNKQSSASkkekttsaketrSAENTSAKDVEPTSTT 322
Cdd:PRK12323   372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAP------------ARRSPAPEALAAARQA 439

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  323 PKNSAPTTTKKPVTTTKEPVPTTTKGPEPTSKEPAPTTPKEPELTIPKEPAPTTKKPAP--TTPKEPAPTTPKEPEPTTP 400
Cdd:PRK12323   440 SARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPweELPPEFASPAPAQPDAAPA 519

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2002298153  401 KESAPTTPKepaPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPA 467
Cdd:PRK12323   520 GWVAESIPD---PATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDWPA 583
PTZ00441 PTZ00441
sporozoite surface protein 2 (SSP2); Provisional
 499-729 3.54e-04

sporozoite surface protein 2 (SSP2); Provisional


Pssm-ID: 240420 [Multi-domain]  Cd Length: 576  Bit Score: 44.95  E-value: 3.54e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  499 ESTTPKEPAPTTPKEPAPTTPKEPAP-TTPKEPAPTTPKE--PAPTTPKEPAPtTPKEPAPTTPKEPAPTTPKEpvPTTP 575
Cdd:PTZ00441   279 EEECPVEPEPLPVPAPVPPTPEDDNPrPTDDEFAVPNFNEglDVPDNPQDPVP-PPNEGKDGNPNEENLFPPGD--DEVP 355

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  576 KEPasttPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPK-EPAPTTPKEpalttPKEPAPTPKEPE-PTTPKEPAPTT 653
Cdd:PTZ00441   356 DES----NVPPNPPNVPGGSNSEFSSDVENPPNPPNPDIPEqEPNIPEDSN-----KEVPEDVPMEPEdDRDNNFNEPKK 426

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2002298153  654 PKEPAPTTPKEPAPTTKKPELTIPKEPVPTTPKEPAPTTPKEPAPTTTKKPELSTPKEPTSTnPKEPEPTLPKEPE 729
Cdd:PTZ00441   427 PENKGDGQNEPVIPKPLDNERDQSNKNKQVNPGNRHNSEDRYTRPHGRNNENRNYNNKNSDI-PKHPERSEHEQPE 501
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 419-490 3.56e-04

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 44.67  E-value: 3.56e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2002298153  419 PAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEP 490
Cdd:PTZ00144   122 GAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRETRVP 193
PRK14949 PRK14949
DNA polymerase III subunits gamma and tau; Provisional
 289-459 3.62e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237863 [Multi-domain]  Cd Length: 944  Bit Score: 45.10  E-value: 3.62e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  289 KQSSASKKEKT-TSAKETRSAENtsakdvePTSTTPKNSAPTTTKKPVTTTKEPVPTTTKGPEPTSKEPAPTTPKEPELT 367
Cdd:PRK14949   637 KKSSADRKPKTpPSRAPPASLSK-------PASSPDASQTSASFDLDPDFELATHQSVPEAALASGSAPAPPPVPDPYDR 709

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  368 IPKEPAPTTkkpapttpkEPAPTTPKEPEPTTPKESAPTTPKEPAPTTpkEPAPTTPKEPAPTTPKEPAPTTPKEPAPTT 447
Cdd:PRK14949   710 PPWEEAPEV---------ASANDGPNNAAEGNLSESVEDASNSELQAV--EQQATHQPQVQAEAQSPASTTALTQTSSEV 778

                          170
                   ....*....|..
gi 2002298153  448 KKPEPTTPKEPA 459
Cdd:PRK14949   779 QDTELNLVLLSS 790
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 416-481 3.65e-04

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 44.67  E-value: 3.65e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2002298153  416 PKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKE 481
Cdd:PTZ00144   124 PPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRE 189
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
528-590 3.65e-04

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 44.99  E-value: 3.65e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2002298153  528 KEPAPTTPKEPAPT---TPKEPAPTTPKEPAPTTPKEPaPTTPKEPVPTTPKEPASTTPKEPAPTT 590
Cdd:COG5373     40 AAEAASAPAEPEPEaaaAATAAAPEAAPAPVPEAPAAP-PAAAEAPAPAAAAPPAEAEPAAAPAAA 104
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 514-585 3.88e-04

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 44.29  E-value: 3.88e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2002298153  514 PAPTTPKEPAPTTPKEPAPTTPKEPAPttpkEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKE 585
Cdd:PTZ00144   122 GAPPAAAPAAAAAAKAEKTTPEKPKAA----APTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRE 189
PRK10819 PRK10819
transport protein TonB; Provisional
 458-587 3.97e-04

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 43.52  E-value: 3.97e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  458 PAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPK---EPAPTTPKEPAPTtpKEPAPTTPKEPAPTT 534
Cdd:PRK10819    42 PAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEApvvIPKPEPKPKPKPK--PKPKPVKKVEEQPKR 119

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 2002298153  535 PKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPA 587
Cdd:PRK10819   120 EVKPVEPRPASPFENTAPARPTSSTATAAASKPVTSVSSGPRALSRNQPQYPA 172
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 395-500 3.97e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 44.67  E-value: 3.97e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  395 PEPTT--PKESAPTTPKEPAPTTPKEPAPTTPkePAPTTPKEPAPTTPkepapttkkPEPTTPKEPAPTTPK-EPAPTTP 471
Cdd:PRK14959   398 PTPGTqgPQGTAPAAGMTPSSAAPATPAPSAA--PSPRVPWDDAPPAP---------PRSGIPPRPAPRMPEaSPVPGAP 466

                           90       100
                   ....*....|....*....|....*....
gi 2002298153  472 KEPAPNTPKEPAPTTPKEPAPTTPKEPES 500
Cdd:PRK14959   467 DSVASASDAPPTLGDPSDTAEHTPSGPRT 495
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
 346-456 3.97e-04

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 468201 [Multi-domain]  Cd Length: 684  Bit Score: 44.62  E-value: 3.97e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  346 TKGPEPTSKEPAPTTPKEPELTIPKEPAPTTK-KPAPTTPKEPAPTtpkePEPTTPkesAPTTPKEPAPTTPKEPAPTTP 424
Cdd:NF033838   380 SKKAEATRLEKIKTDRKKAEEEAKRKAAEEDKvKEKPAEQPQPAPA----PQPEKP---APKPEKPAEQPKAEKPADQQA 452

                           90       100       110
                   ....*....|....*....|....*....|...
gi 2002298153  425 KEP-APTTPKEPAPTTPKEPAPTTKKPEPTTPK 456
Cdd:NF033838   453 EEDyARRSEEEYNRLTQQQPPKTEKPAQPSTPK 485
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
538-673 4.00e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 44.77  E-value: 4.00e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  538 PAPTTPKEPAPTTPKEPAPttpkepAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPkePAPTTPKEPAPTTPKE 617
Cdd:PRK14971   370 SGGRGPKQHIKPVFTQPAA------APQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPP--TVSVDPPAAVPVNPPS 441

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 2002298153  618 PAPTTPKePALTTPKEPAPTPKEPEpTTPKEPAPTTPKEPAPTTPKEPAPTTKKPE 673
Cdd:PRK14971   442 TAPQAVR-PAQFKEEKKIPVSKVSS-LGPSTLRPIQEKAEQATGNIKEAPTGTQKE 495
PRK12757 PRK12757
cell division protein FtsN; Provisional
 558-627 4.05e-04

cell division protein FtsN; Provisional


Pssm-ID: 237191 [Multi-domain]  Cd Length: 256  Bit Score: 43.49  E-value: 4.05e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  558 TPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPA 627
Cdd:PRK12757   111 TPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVEAEKE 180
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 615-672 4.26e-04

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 44.29  E-value: 4.26e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 2002298153  615 PKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAPTTKKP 672
Cdd:PTZ00144   124 PPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTP 181
rne PRK10811
ribonuclease E; Reviewed
 297-459 4.28e-04

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 44.65  E-value: 4.28e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  297 EKTTSAKETRSAENTSAKDVEPTSTTPKNSAPTTTKKPVTTTKEPVPTTTKGPEPTSKEP--APTTPKEP---------E 365
Cdd:PRK10811   860 EAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEViaAPVTEQPQvitesdvavA 939

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  366 LTIPKEPAPTTKKPAPTTPKEPAPTTPKEP--EPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTpkEPAPTTPKEP 443
Cdd:PRK10811   940 QEVAEHAEPVVEPQDETADIEEAAETAEVVvaEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVP--EATVEHNHAT 1017

                          170
                   ....*....|....*.
gi 2002298153  444 APTTKKPEPTTPKEPA 459
Cdd:PRK10811  1018 APMTRAPAPEYVPEAP 1033
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 660-727 4.35e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 44.12  E-value: 4.35e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2002298153  660 TTPKEPAPTTKKPELTIPKEPVPTTPKEPAPTTPKEPAPTTTKKPELSTPKEPTSTNPKEPEPTLPKE 727
Cdd:TIGR00601   75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 245-402 4.37e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 44.47  E-value: 4.37e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  245 PKTTAAKPVTPKPSLAPNSETSKEASSTSNKETTVETKETTETNK---QSSASKKEKTTSA------KETRSAENTSAKD 315
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASapqQAPAVPLPETTSQllaarqQLQRAQGATKAKK 440

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  316 VEPTSTTPKNSAPTTTKKPVTTTKEPVPTTtkgPEPTSKEPAPTTPKEPELTIPKEPA-PTTKKPAPTTPKEPAPTTPKE 394
Cdd:PRK07994   441 SEPAAASRARPVNSALERLASVRPAPSALE---KAPAKKEAYRWKATNPVEVKKEPVAtPKALKKALEHEKTPELAAKLA 517


                   ....*...
gi 2002298153  395 PEPTTPKE 402
Cdd:PRK07994   518 AEAIERDP 525
PHA02682 PHA02682
ORF080 virion core protein; Provisional
 431-554 4.40e-04

ORF080 virion core protein; Provisional


Pssm-ID: 177464 [Multi-domain]  Cd Length: 280  Bit Score: 43.70  E-value: 4.40e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  431 TPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTt 510
Cdd:PHA02682    77 SGQSPLAPSPACAAPAPACPACAPAAPAPAVTCPAPAPACPPATAPTCPPPAVCPAPARPAPACPPSTRQCPPAPPLPT- 155

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 2002298153  511 pkePAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEP 554
Cdd:PHA02682   156 ---PKPAPAAKPIFLHNQLPPPDYPAASCPTIETAPAASPVLEP 196
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 503-575 4.41e-04

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 44.29  E-value: 4.41e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2002298153  503 PKEPAPTTPKEPAPTTPKEPAPTTPKePAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEP-VPTTP 575
Cdd:PTZ00144   124 PPAAAPAAAAAAKAEKTTPEKPKAAA-PTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRETrVPMSR 196
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 411-471 4.53e-04

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 44.29  E-value: 4.53e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2002298153  411 PAPTTPKEPAPTTPKEPAPTTPKEPAPTtPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTP 471
Cdd:PTZ00144   122 GAPPAAAPAAAAAAKAEKTTPEKPKAAA-PTPEPPAASKPTPPAAAKPPEPAPAAKPPPTP 181
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
584-655 4.59e-04

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 44.61  E-value: 4.59e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2002298153  584 KEPAPTTPKEPAPttpkePAPTTPKEPAPTTPKEPAPTTPKEPAlTTPKEPAPTPKEPEPTTPKEPAPTTPK 655
Cdd:COG5373     40 AAEAASAPAEPEP-----EAAAAATAAAPEAAPAPVPEAPAAPP-AAAEAPAPAAAAPPAEAEPAAAPAAAS 105
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 498-577 4.69e-04

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 44.29  E-value: 4.69e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  498 PESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPttpkEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKE 577
Cdd:PTZ00144   114 PLSEIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAA----APTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRE 189
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 458-541 4.73e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 44.22  E-value: 4.73e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  458 PAPTTPKEPAPTTPKEPAPNTPKEPAPttpkePAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 537
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATPPPPAAPP-----SPPGDPPEPPAPEPAPLPAPYPGSLAPPPPPPPGPAGAAPGAALPVRV 93


                   ....
gi 2002298153  538 PAPT 541
Cdd:NF041121    94 PAPP 97
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
381-446 4.81e-04

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 44.79  E-value: 4.81e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2002298153  381 PTTPKEPAPTTPKEPEPTTPKesapttPKEPAPTTPKEPAPTTPkEPAPTTPKEPAPTTPKEPAPT 446
Cdd:PRK15313   560 PDEPIIPDPVDPVIPDPVIPD------PVDPDPVDPVIPDPVIP-DPVDPDPVDPEPVDPVIPDPT 618
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 506-589 4.81e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 44.22  E-value: 4.81e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  506 PAPTTPKEPAPTTPKEPAPTTPkepaPTTPKEPAPTTPKEPAPTTPKEPAPtTPKEPAPTTPKEPVPTTPKEPASTTPKE 585
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATPPP----PAAPPSPPGDPPEPPAPEPAPLPAP-YPGSLAPPPPPPPGPAGAAPGAALPVRV 93


                   ....
gi 2002298153  586 PAPT 589
Cdd:NF041121    94 PAPP 97
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
363-431 4.83e-04

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 44.61  E-value: 4.83e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2002298153  363 EPELTIPKEPAPTTKKPAPT---TPKEPAPTTPKEPEPTTPKEsAPTTPKEPAPTTPKEPAPTTPKEPAPTT 431
Cdd:COG5373     34 EAELAEAAEAASAPAEPEPEaaaAATAAAPEAAPAPVPEAPAA-PPAAAEAPAPAAAAPPAEAEPAAAPAAA 104
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 629-704 4.85e-04

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 44.29  E-value: 4.85e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2002298153  629 TTPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPELTIPKEPVPTTPKEPAPTTpkEPAPTTTKKP 704
Cdd:PTZ00144   120 TGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVA--RADPRETRVP 193
PRK04654 PRK04654
sec-independent translocase; Provisional
 513-594 4.86e-04

sec-independent translocase; Provisional


Pssm-ID: 135173 [Multi-domain]  Cd Length: 214  Bit Score: 42.88  E-value: 4.86e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  513 EPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEP-APTTPKEPVPTTPKEPASTTPKEPAPTTP 591
Cdd:PRK04654   132 EPGAGQAHTPVPAPAPVIAQAQPIAPAPHQTLVPAPHDTIVPAPHAAHLPsAPATPVSVAPVDAGTSASPTPSEPTKIQE 211


                   ...
gi 2002298153  592 KEP 594
Cdd:PRK04654   212 KQP 214
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 364-442 4.89e-04

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 44.29  E-value: 4.89e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2002298153  364 PELTIPKEPAPTTKKPAPTTPKEPAPTTPKEPEPTTPKesaPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 442
Cdd:PTZ00144   114 PLSEIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPT---PEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRE 189
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 587-648 4.96e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 44.12  E-value: 4.96e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2002298153  587 APTTPKEPAPTTPKEPAPTTPkePAPTTPKEPAPTTPKEPALTTPKEP-APTPKEPEPTTPKE 648
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPP--ASPASGMSAAPASAVEEKSPSEESAtATAPESPSTSVPSS 142
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 430-497 5.00e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 44.12  E-value: 5.00e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2002298153  430 TTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKE 497
Cdd:TIGR00601   75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
PLN03237 PLN03237
DNA topoisomerase 2; Provisional
 499-780 5.10e-04

DNA topoisomerase 2; Provisional


Pssm-ID: 215641 [Multi-domain]  Cd Length: 1465  Bit Score: 44.47  E-value: 5.10e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  499 ESTTPKEPAPTTPKEPAPTTPKEPAPTTpkEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPA--PTTPKEPVPTTPK 576
Cdd:PLN03237  1190 ESGAAKKVSRQAPKKPAPKKTTKKASES--ETTEETYGSSAMETENVAEVVKPKGRAGAKKKAPAaaKEKEEEDEILDLK 1267

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  577 EPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEpAPTPKEPEPTTPKEPAPTTPKE 656
Cdd:PLN03237  1268 DRLAAYNLDSAPAQSAKMEETVKAVPARRAAARKKPLASVSVISDSDDDDDDFAVEV-SLAERLKKKGGRKPAAANKKAA 1346

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  657 PAPTTPKEPAPTTKKP------ELTIPKEPVPTTP-KEPAPTTPKePAPTTTKKP--ELSTPKEPTSTNPKEPeptlpke 727
Cdd:PLN03237  1347 KPPAAAKKRGPATVQSgqklltEMLKPAEAIGISPeKKVRKMRAS-PFNKKSGSVlgRAATNKETESSENVSG------- 1418

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|...
gi 2002298153  728 peltlpeepepsnpETSDELIAELAEAPtPKALENNPKEPTVPTETPEVSKPE 780
Cdd:PLN03237  1419 --------------SSSSEKDEIDVSAK-PRPQRANRKQTTYVLSDSESESAD 1456
ftsN TIGR02223
cell division protein FtsN; FtsN is a poorly conserved protein active in cell division in a ...
 429-603 5.22e-04

cell division protein FtsN; FtsN is a poorly conserved protein active in cell division in a number of Proteobacteria. The N-terminal 30 residue region tends to by Lys/Arg-rich, and is followed by a membrane-spanning region. This is followed by an acidic low-complexity region of variable length and a well-conserved C-terminal domain of two tandem regions matched by pfam05036 (Sporulation related repeat), found in several cell division and sporulation proteins. The role of FtsN as a suppressor for other cell division mutations is poorly understood; it may involve cell wall hydrolysis. [Cellular processes, Cell division]


Pssm-ID: 274041 [Multi-domain]  Cd Length: 298  Bit Score: 43.53  E-value: 5.22e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  429 PTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTP-KEPAPTTPKEPAPNTPKEPAPTTP-KEPAPTTPKEPESTTPKEP 506
Cdd:TIGR02223   48 LTESKQANEPETLQPKNQTENGETAADLPPKPEERwSYIEELEAREVLINDPEEPSNGGGvEESAQLTAEQRQLLEQMQA 127

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  507 APTTPKEPAPTTPKEPApTTPKEPAPTTPKEPAPTTPKEPAPTTPK-EPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKE 585
Cdd:TIGR02223  128 DMRAAEKVLATAPSEQT-VAVEARKQTAEKKPQKARTAEAQKTPVEtEKIASKVKEAKQKQKALPKQTAETQSNSKPIET 206

                          170
                   ....*....|....*...
gi 2002298153  586 PAPTTPKEPAPTTPKEPA 603
Cdd:TIGR02223  207 APKADKADKTKPKPKEKA 224
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 341-418 5.24e-04

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 43.90  E-value: 5.24e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2002298153  341 PVPTTTKGPEPTskEPAPTTPKEPELTIPKEPAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKE 418
Cdd:PTZ00144   114 PLSEIDTGGAPP--AAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRE 189
PHA03264 PHA03264
envelope glycoprotein D; Provisional
 382-478 5.46e-04

envelope glycoprotein D; Provisional


Pssm-ID: 223029 [Multi-domain]  Cd Length: 416  Bit Score: 43.84  E-value: 5.46e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  382 TTPKEPAPTTPKEPEPTtPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTT---PKEPAPTTPKEPAPTTKKPEPTTPKEP 458
Cdd:PHA03264   253 VVPPYFEESKGYEPPPA-PSGGSPAPPGDDRPEAKPEPGPVEDGAPGRETggeGEGPEPAGRDGAAGGEPKPGPPRPAPD 331

                           90       100
                   ....*....|....*....|....*..
gi 2002298153  459 A------PTTPKEP-APTTPKEPAPNT 478
Cdd:PHA03264   332 AdrpegwPSLEAITfPPPTPATPAVPR 358
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 547-609 5.64e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 43.73  E-value: 5.64e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2002298153  547 APTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPkePAPTTPKEPAPTTPKEPAPTTPKE 609
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVE--EKSPSEESATATAPESPSTSVPSS 142
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 610-685 5.72e-04

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 43.90  E-value: 5.72e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2002298153  610 PAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEPAPttPKEPAPTTPKEPAPTTKKPELTIPKEP-VPTTP 685
Cdd:PTZ00144   122 GAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPP--AAAKPPEPAPAAKPPPTPVARADPRETrVPMSR 196
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 555-617 5.74e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 43.73  E-value: 5.74e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2002298153  555 APTTPKEPAPTTPKEPVPTTPkePASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 617
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPP--ASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
 302-440 5.97e-04

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 43.81  E-value: 5.97e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  302 AKETRSAENTSAKDVEP----TSTTPKNSAPTTTKKPVTTTKEPVPTTTKGPEPTSKEPAPTTPKEPELTIPKEPAPTTK 377
Cdd:PRK13108   301 AELAAAAVASAASAVGPvgpgEPNQPDDVAEAVKAEVAEVTDEVAAESVVQVADRDGESTPAVEETSEADIEREQPGDLA 380

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2002298153  378 KPAPTTPKE------PAPTTPKEPEPTTPKESAPTTPKEPAPttpkEPAPTTPKEPAPTTPkEPAPTTP 440
Cdd:PRK13108   381 GQAPAAHQVdaeaasAAPEEPAALASEAHDETEPEVPEKAAP----IPDPAKPDELAVAGP-GDDPAEP 444
PRK11633 PRK11633
cell division protein DedD; Provisional
 374-469 6.13e-04

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 42.68  E-value: 6.13e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  374 PTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPkEPAPTTPKEPAPTTPKEPAPTTPKEPapttkKPEPT 453
Cdd:PRK11633    57 PAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEP-EPAPVEPPKPKPVEKPKPKPKPQQKV-----EAPPA 130

                           90
                   ....*....|....*.
gi 2002298153  454 TPKEPAPTTPKEPAPT 469
Cdd:PRK11633   131 PKPEPKPVVEEKAAPT 146
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
 647-729 6.14e-04

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteriztic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 41.19  E-value: 6.14e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  647 KEPAPTTPKEPAPTTPKEPApTTKKPELTIPKEPVPTTPKEPAPTTPKEPAPTTTKKPELSTPKEPTSTNPKEPEPTLPK 726
Cdd:pfam02389    6 KQPCQPPPQEPCVPTTKEPC-HSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEPCSPK 84


                   ...
gi 2002298153  727 EPE 729
Cdd:pfam02389   85 VPE 87
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 482-553 6.23e-04

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 43.90  E-value: 6.23e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2002298153  482 PAPTTPKEPAPTTPKEPESTTPKEPAPttpkEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 553
Cdd:PTZ00144   122 GAPPAAAPAAAAAAKAEKTTPEKPKAA----APTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRE 189
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
 350-463 6.26e-04

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteriztic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 41.19  E-value: 6.26e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  350 EPTSKEPAPTTPKEPELTIPKEPApTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAP--TTPkePAPTTPKEP 427
Cdd:pfam02389   10 QPPPQEPCVPTTKEPCHSKVPEPC-NPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPcyPKV--PEPCSPKVP 86

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 2002298153  428 APTTPKEPAPTTPKEPAPT-TKKPEPTTPKEPAPTTP 463
Cdd:pfam02389   87 EPCHPKAPEPCHPKVPEPCyPKAPEPCQPKVPEPCPS 123
PRK11633 PRK11633
cell division protein DedD; Provisional
 537-621 6.42e-04

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 42.68  E-value: 6.42e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  537 EPAPTTPKEPAPTTPKEP-APTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTP 615
Cdd:PRK11633    61 QALPTQPPEGAAEAVRAGdAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPKPVVE 140


                   ....*.
gi 2002298153  616 KEPAPT 621
Cdd:PRK11633   141 EKAAPT 146
PRK10819 PRK10819
transport protein TonB; Provisional
 440-560 6.46e-04

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 42.75  E-value: 6.46e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  440 PKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPntpkEPAPTTPKE---PAPTTPKEPESTTPKEPAPTTPKEPAP 516
Cdd:PRK10819    42 PAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEP----EPIPEPPKEapvVIPKPEPKPKPKPKPKPKPVKKVEEQP 117

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 2002298153  517 TTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPK 560
Cdd:PRK10819   118 KREVKPVEPRPASPFENTAPARPTSSTATAAASKPVTSVSSGPR 161
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 372-482 6.80e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 43.90  E-value: 6.80e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  372 PAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPK---EPAPTTPKEPAPTTPKEPAPTTPKEPAPTTK 448
Cdd:PRK14959   380 APSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPApsaAPSPRVPWDDAPPAPPRSGIPPRPAPRMPEA 459

                           90       100       110
                   ....*....|....*....|....*....|....
gi 2002298153  449 KPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEP 482
Cdd:PRK14959   460 SPVPGAPDSVASASDAPPTLGDPSDTAEHTPSGP 493
motB PRK12799
flagellar motor protein MotB; Reviewed
 501-622 6.85e-04

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 43.55  E-value: 6.85e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  501 TTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPApTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPAS 580
Cdd:PRK12799   295 THGTVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTT-QASAVALSSAGVLPSDVTLPGTVALPAAEPVN 373

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 2002298153  581 TTPKEPAPTTPKEPA--PTTPKEPAPTTPKEPAPTTPKEPAPTT 622
Cdd:PRK12799   374 MQPQPMSTTETQQSStgNITSTANGPTTSLPAAPASNIPVSPTS 417
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 458-570 6.86e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 43.90  E-value: 6.86e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  458 PAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESttpkePAPTTPKEPAPTTPkePAPTTPKEPAPTTPK- 536
Cdd:PRK14959   387 EGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAA-----PSPRVPWDDAPPAP--PRSGIPPRPAPRMPEa 459

                           90       100       110
                   ....*....|....*....|....*....|....
gi 2002298153  537 EPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEP 570
Cdd:PRK14959   460 SPVPGAPDSVASASDAPPTLGDPSDTAEHTPSGP 493
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 602-677 6.91e-04

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 43.52  E-value: 6.91e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2002298153  602 PAPTTPKEPAPTTPKEPAPTTPKEPAlttPKEPAPTPKEPEPTTPKEPAPTTPKePAPTTPKEPAPTTKKPELTIP 677
Cdd:PTZ00144   122 GAPPAAAPAAAAAAKAEKTTPEKPKA---AAPTPEPPAASKPTPPAAAKPPEPA-PAAKPPPTPVARADPRETRVP 193
PHA03264 PHA03264
envelope glycoprotein D; Provisional
 499-606 6.95e-04

envelope glycoprotein D; Provisional


Pssm-ID: 223029 [Multi-domain]  Cd Length: 416  Bit Score: 43.46  E-value: 6.95e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  499 ESTTPKEPAPTTPKEPAPTtPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEP 578
Cdd:PHA03264   251 GGVVPPYFEESKGYEPPPA-PSGGSPAPPGDDRPEAKPEPGPVEDGAPGRETGGEGEGPEPAGRDGAAGGEPKPGPPRPA 329

                           90       100
                   ....*....|....*....|....*....
gi 2002298153  579 ASTTPKEPAPTTPKEP-APTTPKEPAPTT 606
Cdd:PHA03264   330 PDADRPEGWPSLEAITfPPPTPATPAVPR 358
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 450-521 6.97e-04

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 43.52  E-value: 6.97e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2002298153  450 PEPTTPKEPAPTTPKEPAPTTPKEPAPntpkEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKE 521
Cdd:PTZ00144   122 GAPPAAAPAAAAAAKAEKTTPEKPKAA----APTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRE 189
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
405-586 7.08e-04

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 43.50  E-value: 7.08e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  405 PTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPT-TPKEPAPTTPKEPAPNTPKepa 483
Cdd:pfam05539  168 PKTAVTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTtTSSNPEPQTEPPPSQRGPS--- 244

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  484 pTTPKEPAPTT-PKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTtpkePAPTTPKEPAPTTPKEP 562
Cdd:pfam05539  245 -GSPQHPPSTTsQDQSTTGDGQEHTQRRKTPPATSNRRSPHSTATPPPTTKRQETGRPT----PRPTATTQSGSSPPHSS 319

                          170       180
                   ....*....|....*....|....
gi 2002298153  563 APTTPKEPVPTTPKEPASTTPKEP 586
Cdd:pfam05539  320 PPGVQANPTTQNLVDCKELDPPKP 343
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 530-613 7.15e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 43.84  E-value: 7.15e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  530 PAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPkepasTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 609
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATPPPPAAPPSPPGDPPEPPAPEPAPLPA-----PYPGSLAPPPPPPPGPAGAAPGAALPVRV 93


                   ....
gi 2002298153  610 PAPT 613
Cdd:NF041121    94 PAPP 97
PRK13335 PRK13335
superantigen-like protein SSL3; Reviewed;
423-520 7.38e-04

superantigen-like protein SSL3; Reviewed;


Pssm-ID: 139494 [Multi-domain]  Cd Length: 356  Bit Score: 43.58  E-value: 7.38e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  423 TPK-EPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTpkEPAPNTPKePAPTTPkePAPTTPKEPEST 501
Cdd:PRK13335    73 TPKlEKAPNTNEEKTSASKIEKISQPKQEEQKSLNISATPAPKQEQSQT--TTESTTPK-TKVTTP--PSTNTPQPMQST 147

                           90       100
                   ....*....|....*....|
gi 2002298153  502 TPKEP-APTTPKEPAPTTPK 520
Cdd:PRK13335   148 KSDTPqSPTIKQAQTDMTPK 167
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 403-485 7.40e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 43.45  E-value: 7.40e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  403 SAPTTPKEPAPTTPKEPAPTTPkepaPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEP 482
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATPPP----PAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPPPPPPPGPAGAAPGAALPVRVP 94


                   ...
gi 2002298153  483 APT 485
Cdd:NF041121    95 APP 97
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 307-437 7.41e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 43.93  E-value: 7.41e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  307 SAENTSAKDVEPTSTTPKNSAPTTTKKPVTTTKEPVPTTtkgPEPTSKEPAPTTPKEPELTIPKEPAPTTKKPAPTTPKE 386
Cdd:PRK14951   367 AAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAA---APAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPA 443

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 2002298153  387 PAPTTPKEPEPTTPKESAPTTPKEPAPTTP-KEPAPTTPKEPAPTTPKEPAP 437
Cdd:PRK14951   444 AVALAPAPPAQAAPETVAIPVRVAPEPAVAsAAPAPAAAPAAARLTPTEEGD 495
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
390-471 7.41e-04

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 44.02  E-value: 7.41e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  390 TTPKEP-EPTTPKESAPTTPkEPAPTTPKEPAPTTPKEPAPTTPKepapttPKEPAPTtkKPEPTTPKEPAPTTPKEPAP 468
Cdd:PRK15313   555 TSYIEPdEPIIPDPVDPVIP-DPVIPDPVDPDPVDPVIPDPVIPD------PVDPDPV--DPEPVDPVIPDPTIPDIGQS 625


                   ...
gi 2002298153  469 TTP 471
Cdd:PRK15313   626 DTP 628
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 634-707 7.53e-04

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 43.52  E-value: 7.53e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2002298153  634 PAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPELTIPKEPVPTTPKEPAPTTPKEPAPTTTKKPELS 707
Cdd:PTZ00144   122 GAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRETRVPMS 195
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
398-480 7.65e-04

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 43.08  E-value: 7.65e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  398 TTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPtTKKPEPTTPKEPAPTTPKepAPTTPKEPAPN 477
Cdd:PRK13042    23 TTTQAANATTPSSTKVEAPQSTPPSTKVEAPQSKPNATTPPSTKVEAP-QQTPNATTPSSTKVETPQ--SPTTKQVPTEI 99


                   ...
gi 2002298153  478 TPK 480
Cdd:PRK13042   100 NPK 102
PHA03369 PHA03369
capsid maturational protease; Provisional
 350-630 7.71e-04

capsid maturational protease; Provisional


Pssm-ID: 223061 [Multi-domain]  Cd Length: 663  Bit Score: 43.83  E-value: 7.71e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  350 EPTSKEPAPTTPKEPELTIPKEPAPTtkkPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAP 429
Cdd:PHA03369   361 AAAAKVAVIAAPQTHTGPADRQRPQR---PDGIPYSVPARSPMTAYPPVPQFCGDPGLVSPYNPQSPGTSYGPEPVGPVP 437

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  430 TTPKEP-----------APTTPKEPAPTTKKPEPTTPKEPAPTTPKEpAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEP 498
Cdd:PHA03369   438 PQPTNPyvmpismanmvYPGHPQEHGHERKRKRGGELKEELIETLKL-VKKLKEEQESLAKELEATAHKSEIKKIAESEF 516

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  499 ESTTPKEPAP-----TTPKEPAPTTpKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPT 573
Cdd:PHA03369   517 KNAGAKTAAAniepnCSADAAAPAT-KRARPETKTELEAVVRFPYQIRNMESPAFVHSFTSTTLAAAAGQGSDTAEALAG 595

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 2002298153  574 TPKEPASTTPKEPAP-TTPKEPAPTTPKEPAPTtpkePAPTTPKEPAPTTPKEPALTT 630
Cdd:PHA03369   596 AIETLLTQASAQPAGlSLPAPAVPVNASTPAST----PPPLAPQEPPQPGTSAPSLET 649
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
370-546 7.78e-04

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 43.50  E-value: 7.78e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  370 KEPaPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTpkEPAPTTKK 449
Cdd:pfam05539  166 KEP-KTAVTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTSSNPEPQT--EPPPSQRG 242

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  450 PEpTTPKEPaPTTPKEPAPTTpkepAPNTPKEPAPTTPkePAPTTPKEPESTTPKEPAPTTPKEPAPTtpkePAPTTPKE 529
Cdd:pfam05539  243 PS-GSPQHP-PSTTSQDQSTT----GDGQEHTQRRKTP--PATSNRRSPHSTATPPPTTKRQETGRPT----PRPTATTQ 310

                          170
                   ....*....|....*..
gi 2002298153  530 PAPTTPKEPAPTTPKEP 546
Cdd:pfam05539  311 SGSSPPHSSPPGVQANP 327
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 369-445 7.90e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 43.78  E-value: 7.90e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  369 PKEPAPTTKKpaptTPKEPAPTTPKEPEPTTPKESAPTTPKEPAP---TTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAP 445
Cdd:PRK14954   384 PAGSPDVKKK----APEPDLPQPDRHPGPAKPEAPGARPAELPSPasaPTPEQQPPVARSAPLPPSPQASAPRNVASGKP 459
PRK10819 PRK10819
transport protein TonB; Provisional
 546-667 8.02e-04

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 42.75  E-value: 8.02e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  546 PAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKE-PAPTTPKEPAPTTPKEPAPTTPKEPAPTTPK 624
Cdd:PRK10819    42 PAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPvVIPKPEPKPKPKPKPKPKPVKKVEEQPKREV 121

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 2002298153  625 EPALTTPKEPAPTPKEPEPTTPkePAPTTPKEPAPTTPKEPAP 667
Cdd:PRK10819   122 KPVEPRPASPFENTAPARPTSS--TATAAASKPVTSVSSGPRA 162
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
345-433 8.07e-04

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 43.08  E-value: 8.07e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  345 TTKGPEPTSKEPAPTTPKEPELTIPKEPAPTTKKPAPTTpkEPAPTTPKEPEPTTPKESA-PTTPKEPAPTTPKepAPTT 423
Cdd:PRK13042    17 TTGVITTTTQAANATTPSSTKVEAPQSTPPSTKVEAPQS--KPNATTPPSTKVEAPQQTPnATTPSSTKVETPQ--SPTT 92

                           90
                   ....*....|
gi 2002298153  424 PKEPAPTTPK 433
Cdd:PRK13042    93 KQVPTEINPK 102
PRK11633 PRK11633
cell division protein DedD; Provisional
 418-503 8.21e-04

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 42.30  E-value: 8.21e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  418 EPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPttPKEPAPTTPKE 497
Cdd:PRK11633    61 QALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEA--PPAPKPEPKPV 138


                   ....*.
gi 2002298153  498 PESTTP 503
Cdd:PRK11633   139 VEEKAA 144
PHA02682 PHA02682
ORF080 virion core protein; Provisional
 360-482 8.26e-04

ORF080 virion core protein; Provisional


Pssm-ID: 177464 [Multi-domain]  Cd Length: 280  Bit Score: 42.93  E-value: 8.26e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  360 TPKEPELTIPKEPAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTT 439
Cdd:PHA02682    77 SGQSPLAPSPACAAPAPACPACAPAAPAPAVTCPAPAPACPPATAPTCPPPAVCPAPARPAPACPPSTRQCPPAPPLPTP 156

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 2002298153  440 PKEPApttKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEP 482
Cdd:PHA02682   157 KPAPA---AKPIFLHNQLPPPDYPAASCPTIETAPAASPVLEP 196
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
548-623 8.28e-04

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 44.02  E-value: 8.28e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2002298153  548 PTTPKEPAPTTPKEPAPTTPkepvptTPKEPASTTPKEPAPTTPkEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTP 623
Cdd:PRK15313   560 PDEPIIPDPVDPVIPDPVIP------DPVDPDPVDPVIPDPVIP-DPVDPDPVDPEPVDPVIPDPTIPDIGQSDTP 628
PRK11633 PRK11633
cell division protein DedD; Provisional
 567-670 8.28e-04

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 42.30  E-value: 8.28e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  567 PKEPVPTTPKEPASTTPKEPA-PTTPKEPAPTTPKEP-APTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPK-EPEP 643
Cdd:PRK11633    42 PLVPKPGDRDEPDMMPAATQAlPTQPPEGAAEAVRAGdAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKpKPKP 121

                           90       100
                   ....*....|....*....|....*..
gi 2002298153  644 TTPKEPAPTTPKEPAPTTPKEPAPTTK 670
Cdd:PRK11633   122 QQKVEAPPAPKPEPKPVVEEKAAPTGK 148
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 554-625 8.28e-04

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 43.52  E-value: 8.28e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2002298153  554 PAPTTPKEPAPTTPKEPVPTTPKEPasttPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 625
Cdd:PTZ00144   122 GAPPAAAPAAAAAAKAEKTTPEKPK----AAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRE 189
PTZ00441 PTZ00441
sporozoite surface protein 2 (SSP2); Provisional
 384-536 8.98e-04

sporozoite surface protein 2 (SSP2); Provisional


Pssm-ID: 240420 [Multi-domain]  Cd Length: 576  Bit Score: 43.41  E-value: 8.98e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  384 PKEPAPTTPKEPEPTTPKESAP-TTPKEPAPTTPKE--PAPTTPKEPAPTtPKEPAPTTPKE-----PAPTTKKPEPTTP 455
Cdd:PTZ00441   283 PVEPEPLPVPAPVPPTPEDDNPrPTDDEFAVPNFNEglDVPDNPQDPVPP-PNEGKDGNPNEenlfpPGDDEVPDESNVP 361

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  456 kePAPTTPKEPAPTTPKEPAPNTPKEPAPTTPK-EPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTT 534
Cdd:PTZ00441   362 --PNPPNVPGGSNSEFSSDVENPPNPPNPDIPEqEPNIPEDSNKEVPEDVPMEPEDDRDNNFNEPKKPENKGDGQNEPVI 439


                   ..
gi 2002298153  535 PK 536
Cdd:PTZ00441   440 PK 441
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 387-469 9.01e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 43.45  E-value: 9.01e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  387 PAPTTPKEPEPTTPkeSAPTTPKEPAPTtpkEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTP-KE 465
Cdd:NF041121    19 AAPPSPEGPAPTAA--SQPATPPPPAAP---PSPPGDPPEPPAPEPAPLPAPYPGSLAPPPPPPPGPAGAAPGAALPvRV 93


                   ....
gi 2002298153  466 PAPT 469
Cdd:NF041121    94 PAPP 97
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 404-463 9.19e-04

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 43.13  E-value: 9.19e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  404 APTTPKEPAPTTPKEPAPTTPKEPAPTtPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTP 463
Cdd:PTZ00144   123 APPAAAPAAAAAAKAEKTTPEKPKAAA-PTPEPPAASKPTPPAAAKPPEPAPAAKPPPTP 181
PRK10819 PRK10819
transport protein TonB; Provisional
 403-539 9.42e-04

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 42.36  E-value: 9.42e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  403 SAPTTPKEPAPTTPKEPAPTTPK--EPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPK 480
Cdd:PRK10819    34 SVHQVIELPAPAQPISVTMVAPAdlEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPKPVKKV 113

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 2002298153  481 EPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPA 539
Cdd:PRK10819   114 EEQPKREVKPVEPRPASPFENTAPARPTSSTATAAASKPVTSVSSGPRALSRNQPQYPA 172
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
371-439 9.61e-04

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 43.45  E-value: 9.61e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  371 EPAPTTKKPAPTTPKEPAPTTPKEPEPttpkESAPT-TPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTT 439
Cdd:COG5373     39 EAAEAASAPAEPEPEAAAAATAAAPEA----APAPVpEAPAAPPAAAEAPAPAAAAPPAEAEPAAAPAAA 104
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 411-493 9.74e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 43.07  E-value: 9.74e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  411 PAPTTPKEPAPTTPKEPAPTtpkEPAPTTPKEPAPTTKKPEPTTPKEPAPTtPKEPAPTTPKEPAPNTPKEPAPTTPKEP 490
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATP---PPPAAPPSPPGDPPEPPAPEPAPLPAPY-PGSLAPPPPPPPGPAGAAPGAALPVRVP 94


                   ...
gi 2002298153  491 APT 493
Cdd:NF041121    95 APP 97
PRK11633 PRK11633
cell division protein DedD; Provisional
 450-549 9.75e-04

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 42.30  E-value: 9.75e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  450 PEPTTPKEPAPTTPKEPA-PTTPKEPAPNTPKEP-APTTPKEPAPTTPkePESTTPKEPAPTTPKEPAPTTPKEPAPTTP 527
Cdd:PRK11633    45 PKPGDRDEPDMMPAATQAlPTQPPEGAAEAVRAGdAAAPSLDPATVAP--PNTPVEPEPAPVEPPKPKPVEKPKPKPKPQ 122

                           90       100
                   ....*....|....*....|....
gi 2002298153  528 K--EPAPTTPKEPAPTTPKEPAPT 549
Cdd:PRK11633   123 QkvEAPPAPKPEPKPVVEEKAAPT 146
PRK10905 PRK10905
cell division protein DamX; Validated
 343-444 9.80e-04

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 43.00  E-value: 9.80e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  343 PTTTKGPEPTSKEPAPTTPKEPELTIPKEPAPTTKKPApttpkEPAPTTPKEPEPTTPKESAPTtpkePAPTTPKEPAPT 422
Cdd:PRK10905   139 SRQTAKTQTAERPATTRPARKQAVIEPKKPQATAKTEP-----KPVAQTPKRTEPAAPVASTKA----PAATSTPAPKET 209

                           90       100
                   ....*....|....*....|..
gi 2002298153  423 TPKEPAPTTpkEPAPTTPKEPA 444
Cdd:PRK10905   210 ATTAPVQTA--SPAQTTATPAA 229
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 379-461 9.90e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 43.07  E-value: 9.90e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  379 PAPTTPKEPAPTTPKEPEPTTPkesaPTTPKEPAPTTPKEPAPTTPKEPAPtTPKEPAPTTPKEPAPTTKKPEPTTP-KE 457
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATPPP----PAAPPSPPGDPPEPPAPEPAPLPAP-YPGSLAPPPPPPPGPAGAAPGAALPvRV 93


                   ....
gi 2002298153  458 PAPT 461
Cdd:NF041121    94 PAPP 97
flhF PRK06995
flagellar biosynthesis protein FlhF;
404-521 1.00e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 43.42  E-value: 1.00e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  404 APTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPA 483
Cdd:PRK06995    52 APPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPEAQAPAAPAERAAAENAARR 131

                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 2002298153  484 PTTPKEPAPTTPkePESTTPKEPAPTTPKEPAPTTPKE 521
Cdd:PRK06995   132 LARAAAAAPRPR--VPADAAAAVADAVKARIERIVNDT 167
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 466-537 1.02e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 43.13  E-value: 1.02e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2002298153  466 PAPTTPKEPAPNTPKEPAPTTPKEPAPttpkEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 537
Cdd:PTZ00144   122 GAPPAAAPAAAAAAKAEKTTPEKPKAA----APTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRE 189
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 514-597 1.02e-03

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 43.07  E-value: 1.02e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  514 PAPTTPKEPAPTTPKEPAPTTPkepaPTTPKEPAPTTPKEPAPTTPKEPAPtTPKEPVPTTPKEPASTTPKEPAPTTPKE 593
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATPPP----PAAPPSPPGDPPEPPAPEPAPLPAP-YPGSLAPPPPPPPGPAGAAPGAALPVRV 93


                   ....
gi 2002298153  594 PAPT 597
Cdd:NF041121    94 PAPP 97
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 398-460 1.07e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 42.96  E-value: 1.07e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2002298153  398 TTPKESAPTTPKEPAPTTPkePAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAP 460
Cdd:TIGR00601   84 VAPPAATPTSAPTPTPSPP--ASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSSGS 144
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
352-451 1.10e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 43.41  E-value: 1.10e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  352 TSKEPAPTTPKEPELTIPKEPAPTTKKPAPTTPKEPAPTTPKEPepttpkesAPTTPKEPAPTTPKEPAPTTPkEPAPTT 431
Cdd:PRK14948   512 SQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPP--------PPTATQASSNAPAQIPADSSP-PPPIPE 582

                           90       100
                   ....*....|....*....|
gi 2002298153  432 PKEPAPTTPKEPAPTTKKPE 451
Cdd:PRK14948   583 EPTPSPTKDSSPEEIDKAAK 602
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
493-576 1.11e-03

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 42.70  E-value: 1.11e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  493 TTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTtpKEPAPTTPKEPAPTTPKepAPTTPKEPVP 572
Cdd:PRK13042    23 TTTQAANATTPSSTKVEAPQSTPPSTKVEAPQSKPNATTPPSTKVEAPQ--QTPNATTPSSTKVETPQ--SPTTKQVPTE 98


                   ....
gi 2002298153  573 TTPK 576
Cdd:PRK13042    99 INPK 102
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
540-615 1.12e-03

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 43.25  E-value: 1.12e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2002298153  540 PTTPKEPAPTTPKEPAPTTPKepapttPKEPVPTTPKEPASTTPkEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTP 615
Cdd:PRK15313   560 PDEPIIPDPVDPVIPDPVIPD------PVDPDPVDPVIPDPVIP-DPVDPDPVDPEPVDPVIPDPTIPDIGQSDTP 628
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 530-601 1.13e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 43.13  E-value: 1.13e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2002298153  530 PAPTTPKEPAPTTPKEPAPTTPKEPAPttpkEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKE 601
Cdd:PTZ00144   122 GAPPAAAPAAAAAAKAEKTTPEKPKAA----APTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRE 189
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 474-557 1.18e-03

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 43.07  E-value: 1.18e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  474 PAPNTPKEPAPTTPKEPAPTtpkePESTTPKEPAPTTPKEPAPTTPKEPAPtTPKEPAPTTPKEPAPTTPKEPAPTTPKE 553
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATP----PPPAAPPSPPGDPPEPPAPEPAPLPAP-YPGSLAPPPPPPPGPAGAAPGAALPVRV 93


                   ....
gi 2002298153  554 PAPT 557
Cdd:NF041121    94 PAPP 97
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 387-452 1.18e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 43.01  E-value: 1.18e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2002298153  387 PAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAP---TTPKEPAPTTPKEPAPTTKKPEP 452
Cdd:PRK14954   382 PSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPasaPTPEQQPPVARSAPLPPSPQASA 450
PRK10819 PRK10819
transport protein TonB; Provisional
 577-705 1.18e-03

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 41.98  E-value: 1.18e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  577 EPASTTPKEPAPTT-----PKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTP-KEPAPTPK-EPEPTTPKEP 649
Cdd:PRK10819    36 HQVIELPAPAQPISvtmvaPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPePKPKPKPKpKPKPVKKVEE 115

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 2002298153  650 APTTPKEPAPTTPKEPAPTTkKPELTIPKEPVPTTPKePAPTTPKEPAPTTTKKPE 705
Cdd:PRK10819   116 QPKREVKPVEPRPASPFENT-APARPTSSTATAAASK-PVTSVSSGPRALSRNQPQ 169
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
516-591 1.18e-03

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 43.25  E-value: 1.18e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2002298153  516 PTTPKEPAPTTPKEPAPTTPKepapttPKEPAPTTPKEPAPTTPkEPAPTTPKEPVPTTPKEPASTTPKEPAPTTP 591
Cdd:PRK15313   560 PDEPIIPDPVDPVIPDPVIPD------PVDPDPVDPVIPDPVIP-DPVDPDPVDPEPVDPVIPDPTIPDIGQSDTP 628
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
482-629 1.18e-03

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 43.20  E-value: 1.18e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  482 PAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 561
Cdd:COG3469     71 ATSSTTSTTATATAAAAAATSTSATLVATSTASGANTGTSTVTTTSTGAGSVTSTTSSTAGSTTTSGASATSSAGSTTTT 150

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2002298153  562 PAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALT 629
Cdd:COG3469    151 TTVSGTETATGGTTTTSTTTTTTSASTTPSATTTATATTASGATTPSATTTATTTGPPTPGLPKHVLV 218
KAR9 pfam08580
Yeast cortical protein KAR9; The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal ...
 476-687 1.19e-03

Yeast cortical protein KAR9; The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules. KAR9 localizes at the shmoo tip in mating cells and at the tip of the growing bud in anaphase.


Pssm-ID: 430088 [Multi-domain]  Cd Length: 684  Bit Score: 43.28  E-value: 1.19e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  476 PNTPKEPAPT-TPKEPAPTTP--KEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPK 552
Cdd:pfam08580  430 PGSSPPSSVImTPVNKGSKTPssRRGSSFDFGSSSERVINSKLRRESKLPQIASTLKQTKRPSKIPRASPNHSGFLSTPS 509

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  553 EPAPTtpkePAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPkepaLTTPK 632
Cdd:pfam08580  510 NTATS----ETPTPALRPPSRPQPPPPGNRPRWNASTNTNDLDVGHNFKPLTLTTPSPTPSRSSRSSSTLP----PVSPL 581

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2002298153  633 E------PAPTPKEPEPTTPKE--PAPTTPKEPAPTTPKEPAPTTKKpeLTIPKEpVPTTPKE 687
Cdd:pfam08580  582 SrdksrsPAPTCRSVSRASRRRasRKPTRIGSPNSRTSLLDEPPYPK--LTLSKG-LPRTPRN 641
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 215-554 1.20e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 43.24  E-value: 1.20e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  215 DEAGSGLDNGEPKLTPPPDPPTphnkvtaSPKTTAAKPVTPKPSLAPNSETSKEASSTSNKETTVETKETTETnkQSSAS 294
Cdd:PHA03307   107 TPPGPSSPDPPPPTPPPASPPP-------SPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQA--ALPLS 177

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  295 KKEKTTSAKETRSAENTSAKDVEPTSTTPKNSAPTTTKKPVTTTKEPVPTTTKGPEPTSKEPAPTTPKEpeltipKEPAP 374
Cdd:PHA03307   178 SPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSG------CGWGP 251

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  375 TTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPT--TKKPEP 452
Cdd:PHA03307   252 ENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSREssSSSTSS 331

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  453 TTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAP--TTPKEPAPTTPKEPAPTTPKEP 530
Cdd:PHA03307   332 SSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRrrARAAVAGRARRRDATGRFPAGR 411

                          330       340
                   ....*....|....*....|....
gi 2002298153  531 APTTPKEPAPTTPKEPAPTTPKEP 554
Cdd:PHA03307   412 PRPSPLDAGAASGAFYARYPLLTP 435
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 595-656 1.26e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 42.57  E-value: 1.26e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2002298153  595 APTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPkEPAPTPKEPEPTTPKEPAPTTPKE 656
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVE-EKSPSEESATATAPESPSTSVPSS 142
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 546-617 1.28e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 42.75  E-value: 1.28e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2002298153  546 PAPTTPKEPAPTTPKEPAPTTPKEPvpttPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 617
Cdd:PTZ00144   122 GAPPAAAPAAAAAAKAEKTTPEKPK----AAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRE 189
PRK10819 PRK10819
transport protein TonB; Provisional
 424-548 1.28e-03

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 41.98  E-value: 1.28e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  424 PKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPttpkEPAPTTPK-EPAPNTPKEPAPTTPKEPAPTTPKEPESTT 502
Cdd:PRK10819    42 PAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEP----EPIPEPPKeAPVVIPKPEPKPKPKPKPKPKPVKKVEEQP 117

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 2002298153  503 PKEPAPTTPKEPAPTTPKEPAPTTPkepAPTTPKEPAPTTPKEPAP 548
Cdd:PRK10819   118 KREVKPVEPRPASPFENTAPARPTS---STATAAASKPVTSVSSGP 160
flhF PRK06995
flagellar biosynthesis protein FlhF;
419-537 1.33e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 42.65  E-value: 1.33e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  419 PAPTTPKEPAPttPKEPAPTTPKEPAPTTkkPEPTTPK-EPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKE 497
Cdd:PRK06995    54 PAAAAPAAAQP--PPAAAPAAVSRPAAPA--AEPAPWLvEHAKRLTAQREQLVARAAAPAAPEAQAPAAPAERAAAENAA 129

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 2002298153  498 PESTTPKEPAPTTPkePAPTTPKEPAPTTPKEPAPTTPKE 537
Cdd:PRK06995   130 RRLARAAAAAPRPR--VPADAAAAVADAVKARIERIVNDT 167
PTZ00441 PTZ00441
sporozoite surface protein 2 (SSP2); Provisional
 362-520 1.33e-03

sporozoite surface protein 2 (SSP2); Provisional


Pssm-ID: 240420 [Multi-domain]  Cd Length: 576  Bit Score: 43.03  E-value: 1.33e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  362 KEPELTIPKEPAPTtKKPAPTTPKEPAP-TTPKEPEPTTPKES--APTTPKEPAPTtPKEPAPTTPKE-----PAPTTPK 433
Cdd:PTZ00441   278 EEEECPVEPEPLPV-PAPVPPTPEDDNPrPTDDEFAVPNFNEGldVPDNPQDPVPP-PNEGKDGNPNEenlfpPGDDEVP 355

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  434 EPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPT-TPKEpaPTTPKEPESTTPKEPAPTTPK 512
Cdd:PTZ00441   356 DESNVPPNPPNVPGGSNSEFSSDVENPPNPPNPDIPEQEPNIPEDSNKEVPEdVPME--PEDDRDNNFNEPKKPENKGDG 433


                   ....*...
gi 2002298153  513 EPAPTTPK 520
Cdd:PTZ00441   434 QNEPVIPK 441
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
485-568 1.35e-03

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 42.31  E-value: 1.35e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  485 TTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTtpKEPAPTTPKEPAPTTPKepAPTTPKEPAP 564
Cdd:PRK13042    23 TTTQAANATTPSSTKVEAPQSTPPSTKVEAPQSKPNATTPPSTKVEAPQ--QTPNATTPSSTKVETPQ--SPTTKQVPTE 98


                   ....
gi 2002298153  565 TTPK 568
Cdd:PRK13042    99 INPK 102
rne PRK10811
ribonuclease E; Reviewed
 612-784 1.37e-03

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 43.10  E-value: 1.37e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  612 PTTPKEPAPTTPKEPALTTPKEPA-PTPKEPEPTTPKEPAPTTpkEPAPTTPKEPAPTTkkpeltipkEPVPTTPKEPAP 690
Cdd:PRK10811   846 PVVRPQDVQVEEQREAEEVQVQPVvAEVPVAAAVEPVVSAPVV--EAVAEVVEEPVVVA---------EPQPEEVVVVET 914

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  691 TTPKEPAPTTTKKPELSTPKEPTSTNP--KEPEPTLPKEPELTLPEEPEPSNPETSDELIAELAEAPTPKAlennpkEPT 768
Cdd:PRK10811   915 THPEVIAAPVTEQPQVITESDVAVAQEvaEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVA------EVA 988

                          170
                   ....*....|....*.
gi 2002298153  769 VPTETPEVSKPEMTTA 784
Cdd:PRK10811   989 AEVETVTAVEPEVAPA 1004
PHA03264 PHA03264
envelope glycoprotein D; Provisional
 349-470 1.39e-03

envelope glycoprotein D; Provisional


Pssm-ID: 223029 [Multi-domain]  Cd Length: 416  Bit Score: 42.68  E-value: 1.39e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  349 PEPTSKEPAPTTPKEPELTIPKEPAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPA 428
Cdd:PHA03264   235 PQEAHKAIVDYWFMRHGGVVPPYFEESKGYEPPPAPSGGSPAPPGDDRPEAKPEPGPVEDGAPGRETGGEGEGPEPAGRD 314

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 2002298153  429 PTTPKEPAPTtPKEPAPTTKKPE--PTTPKEP-APTTPKEPAPTT 470
Cdd:PHA03264   315 GAAGGEPKPG-PPRPAPDADRPEgwPSLEAITfPPPTPATPAVPR 358
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 304-402 1.39e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 42.87  E-value: 1.39e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  304 ETRSAENTSAKDVEPTSTTPKNSAPTTTKKPVTTTKEPVPTTTKGPEPTSKEPAPTTPkEPELTipkePAPTTKKPAPTT 383
Cdd:PRK14950   357 EALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPP-RPVAP----PVPHTPESAPKL 431

                           90       100
                   ....*....|....*....|.
gi 2002298153  384 PKE--PAPTTPKEPEPTTPKE 402
Cdd:PRK14950   432 TRAaiPVDEKPKYTPPAPPKE 452
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 482-556 1.41e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 43.01  E-value: 1.41e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2002298153  482 PAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAP---TTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAP 556
Cdd:PRK14954   382 PSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPasaPTPEQQPPVARSAPLPPSPQASAPRNVASGKP 459
PTZ00441 PTZ00441
sporozoite surface protein 2 (SSP2); Provisional
 424-649 1.44e-03

sporozoite surface protein 2 (SSP2); Provisional


Pssm-ID: 240420 [Multi-domain]  Cd Length: 576  Bit Score: 43.03  E-value: 1.44e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  424 PKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKE----PAPTTPKEPAPTtPKEPAPNTPKEPAPTTPKEPapTTPKEPe 499
Cdd:PTZ00441   283 PVEPEPLPVPAPVPPTPEDDNPRPTDDEFAVPNFneglDVPDNPQDPVPP-PNEGKDGNPNEENLFPPGDD--EVPDES- 358

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  500 sttPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPK-EPAPTTPKEpaPTTPKEpaptTPKEpaPTTPKEPVPTTPKEP 578
Cdd:PTZ00441   359 ---NVPPNPPNVPGGSNSEFSSDVENPPNPPNPDIPEqEPNIPEDSN--KEVPED----VPME--PEDDRDNNFNEPKKP 427

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2002298153  579 ASTTPKEPAPTTPKePAPTTPKEPAPTTPKEPA---PTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEP 649
Cdd:PTZ00441   428 ENKGDGQNEPVIPK-PLDNERDQSNKNKQVNPGnrhNSEDRYTRPHGRNNENRNYNNKNSDIPKHPERSEHEQP 500
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 603-664 1.44e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 42.57  E-value: 1.44e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2002298153  603 APTTPKEPAPTTPKEPAPTTPkePALTTPKEPAPTPKEPEPTTPKEPAPTT-PKEPAPTTPKE 664
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPP--ASPASGMSAAPASAVEEKSPSEESATATaPESPSTSVPSS 142
PRK04654 PRK04654
sec-independent translocase; Provisional
 497-578 1.49e-03

sec-independent translocase; Provisional


Pssm-ID: 135173 [Multi-domain]  Cd Length: 214  Bit Score: 41.72  E-value: 1.49e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  497 EPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEP-APTTPKEPAPTTPKEPAPTTPKEPVPTTP 575
Cdd:PRK04654   132 EPGAGQAHTPVPAPAPVIAQAQPIAPAPHQTLVPAPHDTIVPAPHAAHLPsAPATPVSVAPVDAGTSASPTPSEPTKIQE 211


                   ...
gi 2002298153  576 KEP 578
Cdd:PRK04654   212 KQP 214
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 579-678 1.53e-03

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 42.53  E-value: 1.53e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  579 ASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPttpkEPALTTPKEPAPTPK-EPEPTTPKEPAPTTPKEP 657
Cdd:COG3266    263 SASAPATTSLGEQQEVSLPPAVAAQPAAAAAAQPSAVALPAA----PAAAAAAAAPAEAAApQPTAAKPVVTETAAPAAP 338

                           90       100
                   ....*....|....*....|..
gi 2002298153  658 AP-TTPKEPAPTTKKPELTIPK 678
Cdd:COG3266    339 APeAAAAAAAPAAPAVAKKLAA 360
PBP1 COG5180
PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification]; ...
 351-651 1.61e-03

PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification];


Pssm-ID: 444064 [Multi-domain]  Cd Length: 548  Bit Score: 42.74  E-value: 1.61e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  351 PTSKEPAPTTPKEPELTIPKEPAPTTKKPAPTTPKEPAPTTP---KEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEP 427
Cdd:COG5180    240 SEARSRPATVDAQPEMRPPADAKERRRAAIGDTPAAEPPGLPvleAGSEPQSDAPEAETARPIDVKGVASAPPATRPVRP 319

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  428 APTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTpkepAPTTPKEPESTTPKEPA 507
Cdd:COG5180    320 PGGARDPGTPRPGQPTERPAGVPEAASDAGQPPSAYPPAEEAVPGKPLEQGAPRPGSSG----GDGAPFQPPNGAPQPGL 395

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  508 PTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPkepaPTTPKEPAPTTPKEPAPTTPKEPvpttpkepastTPKEPA 587
Cdd:COG5180    396 GRRGAPGPPMGAGDLVQAALDGGGRETASLGGAAGG----AGQGPKADFVPGDAESVSGPAGL-----------ADQAGA 460

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2002298153  588 PTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEPAP 651
Cdd:COG5180    461 AASTAMADFVAPVTDATPVDVADVLGVRPDAILGGNVAPASGLDAETRIIEAEGAPATEDFVAA 524
flhF PRK06995
flagellar biosynthesis protein FlhF;
443-548 1.62e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 42.65  E-value: 1.62e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  443 PAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPtTPKEPAPTTPKEP 522
Cdd:PRK06995    53 PPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPEAQAPAA-PAERAAAENAARR 131

                           90       100
                   ....*....|....*....|....*.
gi 2002298153  523 APTTPKEPAPTTPKEPAPTTPKEPAP 548
Cdd:PRK06995   132 LARAAAAAPRPRVPADAAAAVADAVK 157
PRK13335 PRK13335
superantigen-like protein SSL3; Reviewed;
415-504 1.64e-03

superantigen-like protein SSL3; Reviewed;


Pssm-ID: 139494 [Multi-domain]  Cd Length: 356  Bit Score: 42.42  E-value: 1.64e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  415 TPK-EPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKE---PAPTTPKEPAPNTPKEPAPTTPKEP 490
Cdd:PRK13335    73 TPKlEKAPNTNEEKTSASKIEKISQPKQEEQKSLNISATPAPKQEQSQTTTEsttPKTKVTTPPSTNTPQPMQSTKSDTP 152

                           90
                   ....*....|....*
gi 2002298153  491 -APTTPKEPESTTPK 504
Cdd:PRK13335   153 qSPTIKQAQTDMTPK 167
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
418-486 1.68e-03

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 42.68  E-value: 1.68e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2002298153  418 EPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKkPEPTTPKEPaPTTPKEPAPTTPKEPAPNTPKEPAPTT 486
Cdd:COG5373     38 AEAAEAASAPAEPEPEAAAAATAAAPEAAPA-PVPEAPAAP-PAAAEAPAPAAAAPPAEAEPAAAPAAA 104
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 522-593 1.69e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 42.36  E-value: 1.69e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2002298153  522 PAPTTPKEPAPTTPKEPAPTTPKEPAPttpkEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKE 593
Cdd:PTZ00144   122 GAPPAAAPAAAAAAKAEKTTPEKPKAA----APTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRE 189
sucB TIGR01347
2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component); This ...
 383-494 1.70e-03

2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component); This model describes the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase. [Energy metabolism, TCA cycle]


Pssm-ID: 273565 [Multi-domain]  Cd Length: 403  Bit Score: 42.41  E-value: 1.70e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  383 TPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTP------KEPAPTtpKEPAPTTKKPEPTTpK 456
Cdd:TIGR01347   66 ESGQVLAILEEGNDATAAPPAKSGEEKEETPAASAAAAPTAAANRPSLSPaarrlaKEHGID--LSAVPGTGVTGRVT-K 142

                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 2002298153  457 EPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTT 494
Cdd:TIGR01347  143 EDIIKKTEAPASAQPPAAAAAAAAPAAATRPEERVKMT 180
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
484-644 1.71e-03

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 42.34  E-value: 1.71e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  484 PTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPkepapTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPA 563
Cdd:pfam05539  168 PKTAVTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANQ-----RLSSTEPVGTQGTTTSSNPEPQTEPPPSQRG 242

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  564 PTTPKEPVPTTPKEPASTTP--KEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTtpkePALTTPKEPAPTPKEP 641
Cdd:pfam05539  243 PSGSPQHPPSTTSQDQSTTGdgQEHTQRRKTPPATSNRRSPHSTATPPPTTKRQETGRPT----PRPTATTQSGSSPPHS 318


                   ...
gi 2002298153  642 EPT 644
Cdd:pfam05539  319 SPP 321
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
411-536 1.72e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 42.46  E-value: 1.72e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  411 PAPTTPKEPAPTTPKEPAPTTPkePAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEP 490
Cdd:PRK14971   370 SGGRGPKQHIKPVFTQPAAAPQ--PSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQAV 447

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 2002298153  491 APTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPK 536
Cdd:PRK14971   448 RPAQFKEEKKIPVSKVSSLGPSTLRPIQEKAEQATGNIKEAPTGTQ 493
motB PRK12799
flagellar motor protein MotB; Reviewed
 453-574 1.72e-03

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 42.40  E-value: 1.72e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  453 TTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPEStTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAP 532
Cdd:PRK12799   295 THGTVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQ-ASAVALSSAGVLPSDVTLPGTVALPAAEPVN 373

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 2002298153  533 TTPKEPAPTTPKEPA--PTTPKEPAPTTPKEPAPTTPKEPVPTT 574
Cdd:PRK12799   374 MQPQPMSTTETQQSStgNITSTANGPTTSLPAAPASNIPVSPTS 417
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 594-668 1.72e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 42.36  E-value: 1.72e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2002298153  594 PAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPalttPKEPAPTPKEPEPttPKEPAPTTPKEPAPTTPKEPAPT 668
Cdd:PTZ00144   122 GAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEP----PAASKPTPPAAAK--PPEPAPAAKPPPTPVARADPRET 190
PRK11633 PRK11633
cell division protein DedD; Provisional
 429-525 1.79e-03

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 41.53  E-value: 1.79e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  429 PTTPKePAPTTPKEPAPTTKKPEPTTPKE---------PAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPE 499
Cdd:PRK11633    42 PLVPK-PGDRDEPDMMPAATQALPTQPPEgaaeavragDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPK 120

                           90       100
                   ....*....|....*....|....*.
gi 2002298153  500 STTPKEPAPTTPKEPAPTTPKEPAPT 525
Cdd:PRK11633   121 PQQKVEAPPAPKPEPKPVVEEKAAPT 146
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 352-426 1.80e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 42.36  E-value: 1.80e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2002298153  352 TSKEPAPTTPKEPEltipkEPAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKE 426
Cdd:PTZ00144   120 TGGAPPAAAPAAAA-----AAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRE 189
flhF PRK06995
flagellar biosynthesis protein FlhF;
372-476 1.81e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 42.26  E-value: 1.81e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  372 PAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPE 451
Cdd:PRK06995    53 PPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPEAQAPAAPAERAAAENAARRL 132

                           90       100
                   ....*....|....*....|....*
gi 2002298153  452 PTTPKEPAPTTPKEPAPTTPKEPAP 476
Cdd:PRK06995   133 ARAAAAAPRPRVPADAAAAVADAVK 157
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
623-721 1.82e-03

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 42.86  E-value: 1.82e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  623 PKEPALTTPKEPA-PTPKEPEPTtpkEPAPTTPKEPAPTTPkepapttkkpeltipkEPVPTTPKEPAPTTPKEPAPTTT 701
Cdd:PRK15313   560 PDEPIIPDPVDPViPDPVIPDPV---DPDPVDPVIPDPVIP----------------DPVDPDPVDPEPVDPVIPDPTIP 620

                           90       100
                   ....*....|....*....|
gi 2002298153  702 KKPELSTPkePTSTNPKEPE 721
Cdd:PRK15313   621 DIGQSDTP--PITEHQFRPE 638
PRK12757 PRK12757
cell division protein FtsN; Provisional
 396-483 1.84e-03

cell division protein FtsN; Provisional


Pssm-ID: 237191 [Multi-domain]  Cd Length: 256  Bit Score: 41.57  E-value: 1.84e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  396 EPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPkePAPTTKkpePTTPKEPAPTTPKEPAPTTPKEPA 475
Cdd:PRK12757    98 QPTQLSEVPYNEQTPQVPRSTVQIQQQAQQQQPPATTAQPQPVTP--PRQTTA---PVQPQTPAPVRTQPAAPVTQAVEA 172


                   ....*...
gi 2002298153  476 PNTPKEPA 483
Cdd:PRK12757   173 PKVEAEKE 180
PHA03264 PHA03264
envelope glycoprotein D; Provisional
 541-645 1.84e-03

envelope glycoprotein D; Provisional


Pssm-ID: 223029 [Multi-domain]  Cd Length: 416  Bit Score: 42.30  E-value: 1.84e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  541 TTPKEPAPTTPKEPAPTtPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTT---PKEPAPTTPKEPAPTTPKePAPTTPKE 617
Cdd:PHA03264   253 VVPPYFEESKGYEPPPA-PSGGSPAPPGDDRPEAKPEPGPVEDGAPGRETggeGEGPEPAGRDGAAGGEPK-PGPPRPAP 330

                           90       100
                   ....*....|....*....|....*...
gi 2002298153  618 PAPTTPKEPALTTPKEPAPTPKEPEPTT 645
Cdd:PHA03264   331 DADRPEGWPSLEAITFPPPTPATPAVPR 358
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 290-429 1.86e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 42.55  E-value: 1.86e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  290 QSSASKKEKTTSAKETRSAENTSAKDVEPTSTTPKNSAPTTTKKPVTTTKEPVPTTTKGPEPTSKEPAPTTPKEPELTIP 369
Cdd:PRK07994   367 EPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAA 446

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2002298153  370 KEPAPTTKKPAPTTPKEPAPTT----PKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAP 429
Cdd:PRK07994   447 SRARPVNSALERLASVRPAPSAlekaPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTP 510
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 458-529 1.86e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 42.36  E-value: 1.86e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2002298153  458 PAPTTPKEPAPTTPKEPAPNTPKEPAPttpkEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 529
Cdd:PTZ00144   122 GAPPAAAPAAAAAAKAEKTTPEKPKAA----APTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRE 189
PRK11633 PRK11633
cell division protein DedD; Provisional
 617-699 1.88e-03

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 41.14  E-value: 1.88e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  617 EPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAPTTK---KPELTIPKEPVPTTPKEPAPTTP 693
Cdd:PRK11633    61 QALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKpkpKPKPQQKVEAPPAPKPEPKPVVE 140


                   ....*.
gi 2002298153  694 KEPAPT 699
Cdd:PRK11633   141 EKAAPT 146
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 411-492 1.88e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 42.62  E-value: 1.88e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  411 PAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKkpepTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEP 490
Cdd:PRK14954   382 PSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPA----ELPSPASAPTPEQQPPVARSAPLPPSPQASAPRNVASG 457


                   ..
gi 2002298153  491 AP 492
Cdd:PRK14954   458 KP 459
PRK12757 PRK12757
cell division protein FtsN; Provisional
 358-436 1.89e-03

cell division protein FtsN; Provisional


Pssm-ID: 237191 [Multi-domain]  Cd Length: 256  Bit Score: 41.57  E-value: 1.89e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  358 PTTPKE-PELTIPKEPAPTTKKPAPTTPKEPAPTTPKEPEPTTP--KESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 434
Cdd:PRK12757    99 PTQLSEvPYNEQTPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPprQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVEAE 178


                   ..
gi 2002298153  435 PA 436
Cdd:PRK12757   179 KE 180
PRK10905 PRK10905
cell division protein DamX; Validated
 561-717 1.92e-03

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 41.85  E-value: 1.92e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  561 EPAP-TTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKE---------PAPTTPKEPAPTTPKEPAPTTPKEPALTT 630
Cdd:PRK10905    52 QPAPgTTSAEQTAGNTQQDVSLPPISSTPTQGQTPVATDGQQrvevqgdlnNALTQPQNQQQLNNVAVNSTLPTEPATVA 131

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  631 PKEPAPTPKEPEPTTPKEPAPTT----------PKEPAPTTPKEPAPTTKKPELTIPKEPVpTTPKEPAPTTPKEPAPTT 700
Cdd:PRK10905   132 PVRNGNASRQTAKTQTAERPATTrparkqaviePKKPQATAKTEPKPVAQTPKRTEPAAPV-ASTKAPAATSTPAPKETA 210

                          170
                   ....*....|....*..
gi 2002298153  701 TKKPELSTPKEPTSTNP 717
Cdd:PRK10905   211 TTAPVQTASPAQTTATP 227
flhF PRK06995
flagellar biosynthesis protein FlhF;
514-620 1.92e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 42.26  E-value: 1.92e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  514 PAPTTPKEPAPttPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPAsTTPKEPAPTTPKE 593
Cdd:PRK06995    54 PAAAAPAAAQP--PPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPEAQAPA-APAERAAAENAAR 130

                           90       100
                   ....*....|....*....|....*..
gi 2002298153  594 PAPTTPKEPAPTTPKEPAPTTPKEPAP 620
Cdd:PRK06995   131 RLARAAAAAPRPRVPADAAAAVADAVK 157
PRK12757 PRK12757
cell division protein FtsN; Provisional
 510-581 1.96e-03

cell division protein FtsN; Provisional


Pssm-ID: 237191 [Multi-domain]  Cd Length: 256  Bit Score: 41.57  E-value: 1.96e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2002298153  510 TPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPAST 581
Cdd:PRK12757   111 TPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVEAEKEKE 182
PRK11633 PRK11633
cell division protein DedD; Provisional
 471-573 1.98e-03

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 41.14  E-value: 1.98e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  471 PKEPAPNTPKEPAPTTPKEPA-PTTPKEPESTTPKEP-APTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAP 548
Cdd:PRK11633    42 PLVPKPGDRDEPDMMPAATQAlPTQPPEGAAEAVRAGdAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKP 121

                           90       100
                   ....*....|....*....|....*
gi 2002298153  549 TTPKEPAPTTPKEPAPTTPKEPVPT 573
Cdd:PRK11633   122 QQKVEAPPAPKPEPKPVVEEKAAPT 146
Gag_spuma pfam03276
Spumavirus gag protein;
460-623 1.99e-03

Spumavirus gag protein;


Pssm-ID: 460872 [Multi-domain]  Cd Length: 614  Bit Score: 42.43  E-value: 1.99e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  460 PTTPKEPAPTTPKEPAPNTpKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPapttPKEPAPTTPKEPAPTTPKEPA 539
Cdd:pfam03276  196 PSLPAIGGIHLPAIPGIHA-RAPPGNIARSLGDDIMPSLGDAGMPQPRFAFHPGN----PFAEAEGHPFAEAEGERPRDI 270

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  540 PTTPKEPAPTTPKEPAPttpkEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEpAPTTPKEPAPTTPKEPA 619
Cdd:pfam03276  271 PRAPRIDAPSAPAIPAI----QPIAPPMIPPIGAPIPIPHGASIPGEHIRNPREEPIRLGRE-APAIDGRFAPAIDDLFC 345


                   ....
gi 2002298153  620 PTTP 623
Cdd:pfam03276  346 RIIN 349
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
444-510 2.06e-03

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 42.68  E-value: 2.06e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2002298153  444 APTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPnTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTT 510
Cdd:COG5373     39 EAAEAASAPAEPEPEAAAAATAAAPEAAPAPVP-EAPAAPPAAAEAPAPAAAAPPAEAEPAAAPAAA 104
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
414-496 2.07e-03

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 41.54  E-value: 2.07e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  414 TTPKEPAPTTPKEPAPTTPKEPAPTT-PKEPAPttkKPEPTTPKEPAPTTPKE-PAPTTPKEPAPNTPKepAPTTPKEPA 491
Cdd:PRK13042    23 TTTQAANATTPSSTKVEAPQSTPPSTkVEAPQS---KPNATTPPSTKVEAPQQtPNATTPSSTKVETPQ--SPTTKQVPT 97


                   ....*
gi 2002298153  492 PTTPK 496
Cdd:PRK13042    98 EINPK 102
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 428-489 2.09e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 42.19  E-value: 2.09e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2002298153  428 APTTPKEPAPTTPKEPAPTTKkPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKE 489
Cdd:TIGR00601   82 GKVAPPAATPTSAPTPTPSPP-ASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142
dnaA PRK14086
chromosomal replication initiator protein DnaA;
578-772 2.15e-03

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 42.12  E-value: 2.15e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  578 PASTTPKEPAPTTPKEPAPTTPKEPAPttPKEPAPTTPKEPAPTTPKEPAlTTPKEPAPTPKEPEPTTPKEPAPtTPKEP 657
Cdd:PRK14086    87 TVDPSAGEPAPPPPHARRTSEPELPRP--GRRPYEGYGGPRADDRPPGLP-RQDQLPTARPAYPAYQQRPEPGA-WPRAA 162

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  658 APTTPKEpapttkkPELTIPKEPVPTTPKEPAPTTPKEPAPTTTKKPELSTPK------EPTSTNPKEPEPTLPKEPELT 731
Cdd:PRK14086   163 DDYGWQQ-------QRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRrdydhpRPDWDRPRRDRTDRPEPPPGA 235

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|.
gi 2002298153  732 LPEEPEPSNPETSDELIAELAEAPTPKALENNPKEPTVPTE 772
Cdd:PRK14086   236 GHVHRGGPGPPERDDAPVVPIRPSAPGPLAAQPAPAPGPGE 276
PRK12373 PRK12373
NADH-quinone oxidoreductase subunit E;
434-569 2.16e-03

NADH-quinone oxidoreductase subunit E;


Pssm-ID: 237082 [Multi-domain]  Cd Length: 400  Bit Score: 42.10  E-value: 2.16e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  434 EPA--PTTPKEPAPTTKKpEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPEsTTPKEPAPTTP 511
Cdd:PRK12373   189 EPAggLTSLTEEAGKARY-NASKALAEDIGDTVKRIDGTEVPLLAPWQGDAAPVPPSEAARPKSADAE-TNAALKTPATA 266

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 2002298153  512 KEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 569
Cdd:PRK12373   267 PKAAAKNAKAPEAQPVSGTAAAEPAPKEAAKAAAAAAKPALEDKPRPLGIARPGGADD 324
NESP55 pfam06390
Neuroendocrine-specific golgi protein P55 (NESP55); This family consists of several mammalian ...
 450-620 2.16e-03

Neuroendocrine-specific golgi protein P55 (NESP55); This family consists of several mammalian neuroendocrine-specific golgi protein P55 (NESP55) sequences. NESP55 is a novel member of the chromogranin family and is a soluble, acidic, heat-stable secretory protein that is expressed exclusively in endocrine and nervous tissues, although less widely than chromogranins.


Pssm-ID: 115071 [Multi-domain]  Cd Length: 261  Bit Score: 41.39  E-value: 2.16e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  450 PEPTTPKEPAPTTPKEPAPTTPKEPAPNtpkEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTtpKE 529
Cdd:pfam06390   81 PEPSEPESDHEDEDFEPELARPECLEYD---EDDFDTETDSETEPESDIESETEFETEPETEPDTAPTTEPETEPE--DE 155

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  530 PAPTTPKEPA---------PTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPK 600
Cdd:pfam06390  156 PGPVVPKGATfhqslterlHALKLQSADASPRRAPPSTQEPESAREGEEPERGPLDKDPRDPEEEEEEKEEEKQQPHRCK 235

                          170       180
                   ....*....|....*....|
gi 2002298153  601 EPAPTTPKEPAPTTPKEPAP 620
Cdd:pfam06390  236 PKKPARRRDPSPESPPKKGA 255
PRK13335 PRK13335
superantigen-like protein SSL3; Reviewed;
431-536 2.25e-03

superantigen-like protein SSL3; Reviewed;


Pssm-ID: 139494 [Multi-domain]  Cd Length: 356  Bit Score: 42.04  E-value: 2.25e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  431 TPK-EPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTpkepapttpkEPAPTTPKEPESTTPKEPAPT 509
Cdd:PRK13335    73 TPKlEKAPNTNEEKTSASKIEKISQPKQEEQKSLNISATPAPKQEQSQT----------TTESTTPKTKVTTPPSTNTPQ 142

                           90       100
                   ....*....|....*....|....*..
gi 2002298153  510 TPKEPAPTTPKepAPTTPKEPAPTTPK 536
Cdd:PRK13335   143 PMQSTKSDTPQ--SPTIKQAQTDMTPK 167
motB PRK12799
flagellar motor protein MotB; Reviewed
 493-614 2.25e-03

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 42.01  E-value: 2.25e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  493 TTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPApTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVP 572
Cdd:PRK12799   295 THGTVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTT-QASAVALSSAGVLPSDVTLPGTVALPAAEPVN 373

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 2002298153  573 TTPkEPASTTPKEPAPT---TPKEPAPTTPKEPAPTTPKEPAPTT 614
Cdd:PRK12799   374 MQP-QPMSTTETQQSSTgniTSTANGPTTSLPAAPASNIPVSPTS 417
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
500-584 2.29e-03

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 41.54  E-value: 2.29e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  500 STTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTtpKEPAPTTPKEPAPTTPKEpvPTTPKEPA 579
Cdd:PRK13042    22 TTTTQAANATTPSSTKVEAPQSTPPSTKVEAPQSKPNATTPPSTKVEAPQ--QTPNATTPSSTKVETPQS--PTTKQVPT 97


                   ....*
gi 2002298153  580 STTPK 584
Cdd:PRK13042    98 EINPK 102
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 410-470 2.29e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 41.98  E-value: 2.29e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2002298153  410 EPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTT 470
Cdd:PTZ00144   123 APPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVA 183
motB PRK12799
flagellar motor protein MotB; Reviewed
 485-606 2.31e-03

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 42.01  E-value: 2.31e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  485 TTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPApTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAP 564
Cdd:PRK12799   295 THGTVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTT-QASAVALSSAGVLPSDVTLPGTVALPAAEPVN 373

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 2002298153  565 TTPKEPVPTTPKEPA--STTPKEPAPTTPKEPAPTTPKEPAPTT 606
Cdd:PRK12799   374 MQPQPMSTTETQQSStgNITSTANGPTTSLPAAPASNIPVSPTS 417
PHA03264 PHA03264
envelope glycoprotein D; Provisional
 469-574 2.33e-03

envelope glycoprotein D; Provisional


Pssm-ID: 223029 [Multi-domain]  Cd Length: 416  Bit Score: 41.91  E-value: 2.33e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  469 TTPKEPAPNTPKEPAPTtPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAP 548
Cdd:PHA03264   253 VVPPYFEESKGYEPPPA-PSGGSPAPPGDDRPEAKPEPGPVEDGAPGRETGGEGEGPEPAGRDGAAGGEPKPGPPRPAPD 331

                           90       100
                   ....*....|....*....|....*..
gi 2002298153  549 TTPKEPAPTTPKEP-APTTPKEPVPTT 574
Cdd:PHA03264   332 ADRPEGWPSLEAITfPPPTPATPAVPR 358
flhF PRK06995
flagellar biosynthesis protein FlhF;
522-628 2.38e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 41.88  E-value: 2.38e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  522 PAPTTPKEPAPttPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPtTPKEPAPTTPKE 601
Cdd:PRK06995    54 PAAAAPAAAQP--PPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPEAQAPAA-PAERAAAENAAR 130

                           90       100
                   ....*....|....*....|....*..
gi 2002298153  602 PAPTTPKEPAPTTPKEPAPTTPKEPAL 628
Cdd:PRK06995   131 RLARAAAAAPRPRVPADAAAAVADAVK 157
PRK12373 PRK12373
NADH-quinone oxidoreductase subunit E;
376-524 2.40e-03

NADH-quinone oxidoreductase subunit E;


Pssm-ID: 237082 [Multi-domain]  Cd Length: 400  Bit Score: 41.71  E-value: 2.40e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  376 TKKPAPTTPK---EPA--PTTPKEPEPttPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPApttkKP 450
Cdd:PRK12373   176 VVKPGPQIGRyasEPAggLTSLTEEAG--KARYNASKALAEDIGDTVKRIDGTEVPLLAPWQGDAAPVPPSEAA----RP 249

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2002298153  451 EPTTPK-EPAPTTPKePAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPApTTPKEPAP 524
Cdd:PRK12373   250 KSADAEtNAALKTPA-TAPKAAAKNAKAPEAQPVSGTAAAEPAPKEAAKAAAAAAKPALEDKPRPL-GIARPGGA 322
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 400-520 2.40e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 41.97  E-value: 2.40e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  400 PKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKkPEPTTPKEPAPTTPkePAPTTPKEPAPNTP 479
Cdd:PRK14959   381 PSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAA-PSPRVPWDDAPPAP--PRSGIPPRPAPRMP 457

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 2002298153  480 KepapTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPK 520
Cdd:PRK14959   458 E----ASPVPGAPDSVASASDAPPTLGDPSDTAEHTPSGPR 494
motB PRK12799
flagellar motor protein MotB; Reviewed
 541-670 2.49e-03

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 42.01  E-value: 2.49e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  541 TTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPApTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAP 620
Cdd:PRK12799   295 THGTVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTT-QASAVALSSAGVLPSDVTLPGTVALPAAEPVN 373

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 2002298153  621 TTPkEPALTTPKEPAPTpkepEPTTPKEPAPTTPKEPAPTTPKEPAPTTK 670
Cdd:PRK12799   374 MQP-QPMSTTETQQSST----GNITSTANGPTTSLPAAPASNIPVSPTSR 418
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
365-516 2.50e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 42.07  E-value: 2.50e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  365 ELTIPKEPAPTTKkpAPTTPKEPAPTTPKEPEPTTPKeSAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPA 444
Cdd:PRK14971   353 ELTLIQLAQLTQK--GDDASGGRGPKQHIKPVFTQPA-AAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSV 429

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2002298153  445 PttkKPEPTtPKEPAPTTPKEPAPTTPKEPAPNTpkePAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAP 516
Cdd:PRK14971   430 D---PPAAV-PVNPPSTAPQAVRPAQFKEEKKIP---VSKVSSLGPSTLRPIQEKAEQATGNIKEAPTGTQK 494
PRK12373 PRK12373
NADH-quinone oxidoreductase subunit E;
505-640 2.50e-03

NADH-quinone oxidoreductase subunit E;


Pssm-ID: 237082 [Multi-domain]  Cd Length: 400  Bit Score: 41.71  E-value: 2.50e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  505 EPA--PTTPKEPAPttPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPApttpkEPVPTTPK-EPAST 581
Cdd:PRK12373   189 EPAggLTSLTEEAG--KARYNASKALAEDIGDTVKRIDGTEVPLLAPWQGDAAPVPPSEAA-----RPKSADAEtNAALK 261

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 2002298153  582 TPKePAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKE 640
Cdd:PRK12373   262 TPA-TAPKAAAKNAKAPEAQPVSGTAAAEPAPKEAAKAAAAAAKPALEDKPRPLGIARP 319
flhF PRK06995
flagellar biosynthesis protein FlhF;
554-664 2.51e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 41.88  E-value: 2.51e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  554 PAPTTPKEPAPttPKEPVPTTPKEPASTTPkEPAP---------TTPKEPAPTTPKEPAPTTPkePAPTTPKEPAPTTPK 624
Cdd:PRK06995    54 PAAAAPAAAQP--PPAAAPAAVSRPAAPAA-EPAPwlvehakrlTAQREQLVARAAAPAAPEA--QAPAAPAERAAAENA 128

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 2002298153  625 EPALTTPKEPAPTPkEPEPTTPKEPAPTTPKEPAPTTPKE 664
Cdd:PRK06995   129 ARRLARAAAAAPRP-RVPADAAAAVADAVKARIERIVNDT 167
motB PRK12799
flagellar motor protein MotB; Reviewed
 398-526 2.52e-03

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 42.01  E-value: 2.52e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  398 TTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPApN 477
Cdd:PRK12799   295 THGTVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLPSDVTLPGTVALPAAEPV-N 373

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*....
gi 2002298153  478 TPKEPAPTTPKEPAPTtpkepESTTPKEPAPTTPKEPAPTTPKEPAPTT 526
Cdd:PRK12799   374 MQPQPMSTTETQQSST-----GNITSTANGPTTSLPAAPASNIPVSPTS 417
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 422-493 2.52e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 41.98  E-value: 2.52e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2002298153  422 TTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPtTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPT 493
Cdd:PTZ00144   120 TGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAAS-KPTPPAAAKPPEPAPAAKPPPTPVARADPRET 190
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 578-666 2.55e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 41.97  E-value: 2.55e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  578 PASTTPKEPAPTTPKEPAPTTPKEPAPTTPkePAPTTPKEPAPTTPKE---PALTTPKEP--APTPKEPEPTTPKEPAPT 652
Cdd:PRK14959   400 PGTQGPQGTAPAAGMTPSSAAPATPAPSAA--PSPRVPWDDAPPAPPRsgiPPRPAPRMPeaSPVPGAPDSVASASDAPP 477

                           90
                   ....*....|....
gi 2002298153  653 TPKEPAPTTPKEPA 666
Cdd:PRK14959   478 TLGDPSDTAEHTPS 491
PRK10819 PRK10819
transport protein TonB; Provisional
 586-722 2.60e-03

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 41.21  E-value: 2.60e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  586 PAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPttpkEPalttpkEPAPTPKEPEPTtpkePAPTTPKEPAPTTPKEP 665
Cdd:PRK10819    42 PAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEP----EP------EPIPEPPKEAPV----VIPKPEPKPKPKPKPKP 107

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 2002298153  666 APTTKKPEltIPKEPV-PTTPKEPAPTTPKEPAPTTTKKPElSTPKEPTSTNPKEPEP 722
Cdd:PRK10819   108 KPVKKVEE--QPKREVkPVEPRPASPFENTAPARPTSSTAT-AAASKPVTSVSSGPRA 162
flhF PRK06995
flagellar biosynthesis protein FlhF;
506-625 2.64e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 41.88  E-value: 2.64e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  506 PAPTTPKEPAPttPKEPAPTTPKEPAPTTPkEPAPtTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKE 585
Cdd:PRK06995    54 PAAAAPAAAQP--PPAAAPAAVSRPAAPAA-EPAP-WLVEHAKRLTAQREQLVARAAAPAAPEAQAPAAPAERAAAENAA 129

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 2002298153  586 PAPTTPKEPAPTTPkePAPTTPKEPAPTTPKEPAPTTPKE 625
Cdd:PRK06995   130 RRLARAAAAAPRPR--VPADAAAAVADAVKARIERIVNDT 167
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
636-719 2.69e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 41.87  E-value: 2.69e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  636 PTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEL---TIPKEPVPTTPKEPAPTTPKEPAPTttkkPELSTPKEP 712
Cdd:PRK14948   361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQaatTPSPPPAKASPPIPVPAEPTEPSPT----PPANAANAP 436


                   ....*..
gi 2002298153  713 TSTNPKE 719
Cdd:PRK14948   437 PSLNLEE 443
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 490-561 2.70e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 41.59  E-value: 2.70e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2002298153  490 PAPTTPKEPESTTPKEPAPTTPKEPAPttpkEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 561
Cdd:PTZ00144   122 GAPPAAAPAAAAAAKAEKTTPEKPKAA----APTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRE 189
PRK12757 PRK12757
cell division protein FtsN; Provisional
 431-501 2.71e-03

cell division protein FtsN; Provisional


Pssm-ID: 237191 [Multi-domain]  Cd Length: 256  Bit Score: 41.18  E-value: 2.71e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2002298153  431 TPKEPAPT-TPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPEST 501
Cdd:PRK12757   111 TPQVPRSTvQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVEAEKEKE 182
PRK13335 PRK13335
superantigen-like protein SSL3; Reviewed;
558-655 2.77e-03

superantigen-like protein SSL3; Reviewed;


Pssm-ID: 139494 [Multi-domain]  Cd Length: 356  Bit Score: 41.65  E-value: 2.77e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  558 TPK-EPAPTTPKEPVPTTPKEPASTTPKEPAPTTpKEPAPTTPKEPAP-TTPKEPAPTtpkePAPTTPKEPALTTPKEPA 635
Cdd:PRK13335    73 TPKlEKAPNTNEEKTSASKIEKISQPKQEEQKSL-NISATPAPKQEQSqTTTESTTPK----TKVTTPPSTNTPQPMQST 147

                           90       100
                   ....*....|....*....|
gi 2002298153  636 PTPKEPEPTTPKEPAPTTPK 655
Cdd:PRK13335   148 KSDTPQSPTIKQAQTDMTPK 167
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 341-409 2.82e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 41.59  E-value: 2.82e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2002298153  341 PVPTTTKGPEPTSKEPAPTTPKEPELTIPKEPAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPK 409
Cdd:PTZ00144   122 GAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRET 190
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 435-517 2.82e-03

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 41.91  E-value: 2.82e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  435 PAPTTPKEPAPTTKkPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKepesTTPKEPAPTTP-KE 513
Cdd:NF041121    19 AAPPSPEGPAPTAA-SQPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPPPPPPPG----PAGAAPGAALPvRV 93


                   ....
gi 2002298153  514 PAPT 517
Cdd:NF041121    94 PAPP 97
PRK13335 PRK13335
superantigen-like protein SSL3; Reviewed;
470-568 2.94e-03

superantigen-like protein SSL3; Reviewed;


Pssm-ID: 139494 [Multi-domain]  Cd Length: 356  Bit Score: 41.65  E-value: 2.94e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  470 TPK-EPAPNTPKEPAPTTPKEPAPTTPKEpESTTPKEPAPTTPKEPAP-TTPKEPAPTtpkePAPTTPkePAPTTPKEPA 547
Cdd:PRK13335    73 TPKlEKAPNTNEEKTSASKIEKISQPKQE-EQKSLNISATPAPKQEQSqTTTESTTPK----TKVTTP--PSTNTPQPMQ 145

                           90       100
                   ....*....|....*....|..
gi 2002298153  548 PTTPKEP-APTTPKEPAPTTPK 568
Cdd:PRK13335   146 STKSDTPqSPTIKQAQTDMTPK 167
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 594-674 3.01e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 41.85  E-value: 3.01e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  594 PAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAP-TPKEPEPTTPKEPAPttPKEPAPTTPKEPAPTTKKP 672
Cdd:PRK14954   382 PSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPaSAPTPEQQPPVARSA--PLPPSPQASAPRNVASGKP 459


                   ..
gi 2002298153  673 EL 674
Cdd:PRK14954   460 GV 461
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
350-423 3.07e-03

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 41.91  E-value: 3.07e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2002298153  350 EPTSKEPAPTTPKEPELtipkEPAPTTKKPAPTTPKEPAPTTPKEPePTTPKESAPTTPKEPAPTTPKEPAPTT 423
Cdd:COG5373     36 ELAEAAEAASAPAEPEP----EAAAAATAAAPEAAPAPVPEAPAAP-PAAAEAPAPAAAAPPAEAEPAAAPAAA 104
PRK10856 PRK10856
cytoskeleton protein RodZ;
388-477 3.23e-03

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 41.17  E-value: 3.23e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  388 APTTPKEPEPTTPKESAPTTPKEPAPTTPKEPApTTPKEPAPTTPKEPAPTTPKEPAPTtkkpePTTPKEPAPTTPKEPA 467
Cdd:PRK10856   169 TTDPATTPAPAAPVDTTPTNSQTPAVATAPAPA-VDPQQNAVVAPSQANVDTAATPAPA-----APATPDGAAPLPTDQA 242

                           90
                   ....*....|
gi 2002298153  468 PTTPKEPAPN 477
Cdd:PRK10856   243 GVSTPAADPN 252
PHA02682 PHA02682
ORF080 virion core protein; Provisional
 374-490 3.23e-03

ORF080 virion core protein; Provisional


Pssm-ID: 177464 [Multi-domain]  Cd Length: 280  Bit Score: 41.00  E-value: 3.23e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  374 PTTKKPAPTTPKEPAPTtPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE-----PAPTTK 448
Cdd:PHA02682    76 PSGQSPLAPSPACAAPA-PACPACAPAAPAPAVTCPAPAPACPPATAPTCPPPAVCPAPARPAPACPPStrqcpPAPPLP 154

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 2002298153  449 KPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEP 490
Cdd:PHA02682   155 TPKPAPAAKPIFLHNQLPPPDYPAASCPTIETAPAASPVLEP 196
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 369-446 3.27e-03

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 41.53  E-value: 3.27e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  369 PKEPAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTT---PKEPAPTTPKEPAPTTPKEPAPTTPKEPAP 445
Cdd:NF041121    17 RAAAPPSPEGPAPTAASQPATPPPPAAPPSPPGDPPEPPAPEPAPLPapyPGSLAPPPPPPPGPAGAAPGAALPVRVPAP 96


                   .
gi 2002298153  446 T 446
Cdd:NF041121    97 P 97
PRK14963 PRK14963
DNA polymerase III subunits gamma and tau; Provisional
 369-446 3.31e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184927 [Multi-domain]  Cd Length: 504  Bit Score: 41.75  E-value: 3.31e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  369 PKEPAPTTKKPAPTTPKEPAPTTPKEPEPTTPKeSAPTTPKEPAPTTPKEPAPT--TPKEPAPTTPKEPAPTTPKEPAPT 446
Cdd:PRK14963   346 PSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLR-SAPTAAATAAGAPLPDFDPRprGPPAPEPARSAEAPPLVAPAAAPA 424
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 570-636 3.42e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 41.47  E-value: 3.42e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  570 PVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAP---TTPKEPAPTTPKEPALTTPKEPAP 636
Cdd:PRK14954   382 PSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPasaPTPEQQPPVARSAPLPPSPQASAP 451
PRK12373 PRK12373
NADH-quinone oxidoreductase subunit E;
465-601 3.50e-03

NADH-quinone oxidoreductase subunit E;


Pssm-ID: 237082 [Multi-domain]  Cd Length: 400  Bit Score: 41.33  E-value: 3.50e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  465 EPA--PTTPKEPAPntPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPkEPAPTTPKEPAPTT 542
Cdd:PRK12373   189 EPAggLTSLTEEAG--KARYNASKALAEDIGDTVKRIDGTEVPLLAPWQGDAAPVPPSEAARPKS-ADAETNAALKTPAT 265

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 2002298153  543 PKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKE 601
Cdd:PRK12373   266 APKAAAKNAKAPEAQPVSGTAAAEPAPKEAAKAAAAAAKPALEDKPRPLGIARPGGADD 324
PRK10856 PRK10856
cytoskeleton protein RodZ;
371-463 3.55e-03

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 41.17  E-value: 3.55e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  371 EPAPTTKKPAPTTPKEPAPTTPKEPEPtTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPkePAPTTKKP 450
Cdd:PRK10856   160 QSVPLDTSTTTDPATTPAPAAPVDTTP-TNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAP--ATPDGAAP 236

                           90
                   ....*....|...
gi 2002298153  451 EPTTPKepAPTTP 463
Cdd:PRK10856   237 LPTDQA--GVSTP 247
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 490-586 3.61e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 41.59  E-value: 3.61e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  490 PAPTTPKEPESTTPKEPAPTTPKEPAPTTPkePAPTTPKEPAPTTPkePAPTTPKEPAPTTPK-EPAPTTPKEPAPTTPK 568
Cdd:PRK14959   400 PGTQGPQGTAPAAGMTPSSAAPATPAPSAA--PSPRVPWDDAPPAP--PRSGIPPRPAPRMPEaSPVPGAPDSVASASDA 475

                           90
                   ....*....|....*...
gi 2002298153  569 EPVPTTPKEPASTTPKEP 586
Cdd:PRK14959   476 PPTLGDPSDTAEHTPSGP 493
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 290-394 3.61e-03

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 41.37  E-value: 3.61e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  290 QSSASKKEKTTSAKETRSAENTSAKDVEPTSTTPK-NSAPTTTKKPVTTTKEPVPTTTKGPEPTSKEPAPTTPKEPELTI 368
Cdd:COG3266    260 QASSASAPATTSLGEQQEVSLPPAVAAQPAAAAAAqPSAVALPAAPAAAAAAAAPAEAAAPQPTAAKPVVTETAAPAAPA 339

                           90       100
                   ....*....|....*....|....*.
gi 2002298153  369 PKEPAPTtkkPAPTTPKEPAPTTPKE 394
Cdd:COG3266    340 PEAAAAA---AAPAAPAVAKKLAADE 362
SARG pfam15385
Specifically androgen-regulated gene protein; This family of proteins is found in eukaryotes, ...
 422-655 3.63e-03

Specifically androgen-regulated gene protein; This family of proteins is found in eukaryotes, the function of this protein is still unknown but it is thought to be an androgen receptor. Protein expression is up-regulated in the presence of androgens, but not in the presence of glucocorticoids. SARG tends to be highly expressed in prostate tissue. Proteins in this family are typically between 340 and 587 amino acids in length. There is a conserved EETI sequence motif.


Pssm-ID: 464692 [Multi-domain]  Cd Length: 568  Bit Score: 41.70  E-value: 3.63e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  422 TTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEP-APTTPKEPES 500
Cdd:pfam15385   46 TTPRSPRALPITQPAPQGLPEETIIQQRPEPRRVTQSSSTHPPEPQGLGLRSGSYSLPRNIHIGRSQNLrKSTTQTNSHI 125

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  501 TTPKEPAPTTPKEPAPTTPKEPapttpkEPAPTTPKEPAPTTPKEPAPttPKEPAPTTPKEPApttPKEPVPTTPKEPAS 580
Cdd:pfam15385  126 PGESEGLVPEPEKEQTSQSSEP------SQPPATPQEAALDLDTVLIP--PPEAFRDTQPEQR---GEDSLPKGPGQQSP 194

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2002298153  581 TtpKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEPaPTTPK 655
Cdd:pfam15385  195 T--PQLHPSVSSQKRKETSSEAMSQKAKEKGSTGGPGQPQPPPAMSSQNLRSEDAPLPSGGDPSAKLAP-PTAPK 266
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
597-729 3.64e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 41.68  E-value: 3.64e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  597 TTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEPAPTTPkePAPTTPKEPAPTTkkPELTI 676
Cdd:PRK14971   368 DASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPP--TVSVDPPAAVPVN--PPSTA 443

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 2002298153  677 PKEPVPTTPKEpapttPKEPAPTTTKKPELST--PKEPTSTNPKEPEPTLPKEPE 729
Cdd:PRK14971   444 PQAVRPAQFKE-----EKKIPVSKVSSLGPSTlrPIQEKAEQATGNIKEAPTGTQ 493
wall_bind_EntB NF040676
cell wall-binding protein EntB; This HMM describes the cell wall-binding protein EntB, as ...
 357-601 3.65e-03

cell wall-binding protein EntB; This HMM describes the cell wall-binding protein EntB, as found in Bacillus cereus. EntB is related to EntA, EntC, and EndD. All Ent family proteins have a signal peptide, an N-terminal SH3 domain and a C-terminal 3D (Asp-Asp-Asp) domain. EntB and EndC have a central region with a highly variable number of repeats resembling KAXEXX. The gene symbol derives from the notion that at least some members of the family function as enterotoxins, but more recent descriptions focus on roles in stress response and cell wall integrity.


Pssm-ID: 468642 [Multi-domain]  Cd Length: 476  Bit Score: 41.31  E-value: 3.65e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  357 APTTPKEPELT--IPK-EPAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPApttpK 433
Cdd:NF040676   145 APTEKKADEKTkqVAKvQKSVKAKEEAKTQKVAKAKETTKAQEIVKPKEEVKVQEVVKPKEEPKVQEIVKPKEEV----K 220

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  434 EPAPTTPKEpapTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTtpKE 513
Cdd:NF040676   221 VQEEVKPKE---EEKVQEIVKPKEEAKVQEEVKVKEEAKVQEIAKAKEEAKAQEIAKAKEEAKAQEIAKAKEEAKA--QE 295

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  514 PAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPApttpKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKE 593
Cdd:NF040676   296 IAKAKEEEKAQEIAKAKEEAKAREIAKAKEEEKA----REIAKAKEEAKAREIAKAKEEAKAREIAKAKEEERAKEASKN 371


                   ....*...
gi 2002298153  594 PAPTTPKE 601
Cdd:NF040676   372 NIQSAKRE 379
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 378-454 3.71e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 41.21  E-value: 3.71e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2002298153  378 KPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPttpkEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTT 454
Cdd:PTZ00144   113 APLSEIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAA----APTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARA 185
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 522-605 3.78e-03

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 41.53  E-value: 3.78e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  522 PAPTTPKEPAPTTPKEPAPTTPkePAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKepapTTPKEPAPTTP-K 600
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATPPP--PAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPPPPPPPG----PAGAAPGAALPvR 92


                   ....*
gi 2002298153  601 EPAPT 605
Cdd:NF041121    93 VPAPP 97
flhF PRK06995
flagellar biosynthesis protein FlhF;
458-574 3.79e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 41.49  E-value: 3.79e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  458 PAPTTPKEPAPttPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPtTPKEPAPTTPKE 537
Cdd:PRK06995    54 PAAAAPAAAQP--PPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPEAQAPAA-PAERAAAENAAR 130

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 2002298153  538 PAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTT 574
Cdd:PRK06995   131 RLARAAAAAPRPRVPADAAAAVADAVKARIERIVNDT 167
PRK12757 PRK12757
cell division protein FtsN; Provisional
 472-619 3.90e-03

cell division protein FtsN; Provisional


Pssm-ID: 237191 [Multi-domain]  Cd Length: 256  Bit Score: 40.41  E-value: 3.90e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  472 KEPAPNTPkePAPTTPKEPAPTTP-------KEPESTTPKEPAPTTPKEPAPTtpKEPAPTTPKE------------PAP 532
Cdd:PRK12757    24 KEEAPLLP--NHKPRTGNGLPPKPeerwryiKELENRQIGVPTPTEPSAGGEV--NSPTQLTDEQrqlleqmqadmrQQP 99

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  533 TTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKepasttPKEPAPTTPKEPAPTTPKEPAPTTPKEPAP 612
Cdd:PRK12757   100 TQLSEVPYNEQTPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPP------RQTTAPVQPQTPAPVRTQPAAPVTQAVEAP 173


                   ....*..
gi 2002298153  613 TTPKEPA 619
Cdd:PRK12757   174 KVEAEKE 180
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 536-728 3.95e-03

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 41.56  E-value: 3.95e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  536 KEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPT---TPKEP---------AS---TTPKEPAPTTPKEPAPTTPK 600
Cdd:pfam09770  105 QQPAARAAQSSAQPPASSLPQYQYASQQSQQPSKPVRTgyeKYKEPepipdlqvdASlwgVAPKKAAAPAPAPQPAAQPA 184

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  601 EPAPTTPK------------EPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAPT 668
Cdd:pfam09770  185 SLPAPSRKmmsleeveaamrAQAKKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQQHPGQGHPVT 264

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2002298153  669 T-KKPELTIPKEPVPTTPkePAPTTPKEPAPTTTKKP--------ELSTPKEPTSTNPKEPEPTLPKEP 728
Cdd:pfam09770  265 IlQRPQSPQPDPAQPSIQ--PQAQQFHQQPPPVPVQPtqilqnpnRLSAARVGYPQNPQPGVQPAPAHQ 331
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 395-474 3.98e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 41.21  E-value: 3.98e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  395 PEPTTPKESAPTTPKEPAPTTPKEPAPttpkEPAPTTPKEPAPTtpkePAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEP 474
Cdd:PTZ00144   122 GAPPAAAPAAAAAAKAEKTTPEKPKAA----APTPEPPAASKPT----PPAAAKPPEPAPAAKPPPTPVARADPRETRVP 193
PRK08691 PRK08691
DNA polymerase III subunits gamma and tau; Validated
 309-492 4.04e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236333 [Multi-domain]  Cd Length: 709  Bit Score: 41.62  E-value: 4.04e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  309 ENTSAKDVEpTSTTPKNSAPTTTKKPVTTTKEPVPTTT---KGPEPTSKEPAPTTPKEPELTIPKEPAPTTKKPAPTTPK 385
Cdd:PRK08691   373 ENTELQSPS-AQTAEKETAAKKPQPRPEAETAQTPVQTasaAAMPSEGKTAGPVSNQENNDVPPWEDAPDEAQTAAGTAQ 451

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  386 EPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTP-KEPAPT------TPKEPAPTTKKPEPTTPKEP 458
Cdd:PRK08691   452 TSAKSIQTASEAETPPENQVSKNKAADNETDAPLSEVPSENPIQATPnDEAVETetfaheAPAEPFYGYGFPDNDCPPED 531

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|..
gi 2002298153  459 APTTPKEP----APTTPKEPAPNTPKEPA----PTTPKEPAP 492
Cdd:PRK08691   532 GAEIPPPDwehaAPADTAGGGADEEAEAGgiggNNTPSAPPP 573
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 379-455 4.08e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 41.21  E-value: 4.08e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2002298153  379 PAPTTPKEPAPTTPKePEPTTPKESAPTTPKEPAPTTPKePAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTP 455
Cdd:PTZ00144   122 GAPPAAAPAAAAAAK-AEKTTPEKPKAAAPTPEPPAASK-PTPPAAAKPPEPAPAAKPPPTPVARADPRETRVPMSR 196
PRK04654 PRK04654
sec-independent translocase; Provisional
 439-538 4.11e-03

sec-independent translocase; Provisional


Pssm-ID: 135173 [Multi-domain]  Cd Length: 214  Bit Score: 40.18  E-value: 4.11e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  439 TPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPEsttpkepAPTTPKEPAPTT 518
Cdd:PRK04654   122 SAQVDAAAGAEPGAGQAHTPVPAPAPVIAQAQPIAPAPHQTLVPAPHDTIVPAPHAAHLPS-------APATPVSVAPVD 194

                           90       100
                   ....*....|....*....|
gi 2002298153  519 PKEPAPTTPKEPAPTTPKEP 538
Cdd:PRK04654   195 AGTSASPTPSEPTKIQEKQP 214
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
446-528 4.27e-03

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 40.77  E-value: 4.27e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  446 TTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTtpKEPESTTPKEPAPTTPKepAPTTPKEPAPT 525
Cdd:PRK13042    24 TTQAANATTPSSTKVEAPQSTPPSTKVEAPQSKPNATTPPSTKVEAPQ--QTPNATTPSSTKVETPQ--SPTTKQVPTEI 99


                   ...
gi 2002298153  526 TPK 528
Cdd:PRK13042   100 NPK 102
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 562-636 4.35e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 41.47  E-value: 4.35e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2002298153  562 PAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAP---TTPKEPAPTTPKEPAPTTPKEPALTTPKEPAP 636
Cdd:PRK14954   382 PSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPasaPTPEQQPPVARSAPLPPSPQASAPRNVASGKP 459
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
483-647 4.35e-03

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 41.28  E-value: 4.35e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  483 APTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPkePAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKeP 562
Cdd:COG3469     53 ASGSAGSGTGTTAASSTAATSSTTSTTATATAAAAAA--TSTSATLVATSTASGANTGTSTVTTTSTGAGSVTSTTSS-T 129

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  563 APTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPE 642
Cdd:COG3469    130 AGSTTTSGASATSSAGSTTTTTTVSGTETATGGTTTTSTTTTTTSASTTPSATTTATATTASGATTPSATTTATTTGPPT 209


                   ....*
gi 2002298153  643 PTTPK 647
Cdd:COG3469    210 PGLPK 214
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
424-503 4.35e-03

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 41.32  E-value: 4.35e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  424 PKEPAPTTPKEPAPTTPKEPAPTtkKPEPTTPKEPAPTTPK--EPAPTtpkepapntpkEPAPTTPKEPAPTTPKEPEST 501
Cdd:PRK15313   560 PDEPIIPDPVDPVIPDPVIPDPV--DPDPVDPVIPDPVIPDpvDPDPV-----------DPEPVDPVIPDPTIPDIGQSD 626


                   ..
gi 2002298153  502 TP 503
Cdd:PRK15313   627 TP 628
PRK12757 PRK12757
cell division protein FtsN; Provisional
 588-670 4.38e-03

cell division protein FtsN; Provisional


Pssm-ID: 237191 [Multi-domain]  Cd Length: 256  Bit Score: 40.41  E-value: 4.38e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  588 PTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAP 667
Cdd:PRK12757    99 PTQLSEVPYNEQTPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVEAE 178


                   ...
gi 2002298153  668 TTK 670
Cdd:PRK12757   179 KEK 181
motB PRK12799
flagellar motor protein MotB; Reviewed
 378-486 4.40e-03

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 41.24  E-value: 4.40e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  378 KPAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEP-------APTTPKEPAPTTPKEPAPTTPKEPAPTTKKP 450
Cdd:PRK12799   299 VPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTtqasavaLSSAGVLPSDVTLPGTVALPAAEPVNMQPQP 378

                           90       100       110
                   ....*....|....*....|....*....|....*....
gi 2002298153  451 EPTTPKEPAPT---TPKEPAPTTPKEPAPNTPKEPAPTT 486
Cdd:PRK12799   379 MSTTETQQSSTgniTSTANGPTTSLPAAPASNIPVSPTS 417
NESP55 pfam06390
Neuroendocrine-specific golgi protein P55 (NESP55); This family consists of several mammalian ...
 380-548 4.49e-03

Neuroendocrine-specific golgi protein P55 (NESP55); This family consists of several mammalian neuroendocrine-specific golgi protein P55 (NESP55) sequences. NESP55 is a novel member of the chromogranin family and is a soluble, acidic, heat-stable secretory protein that is expressed exclusively in endocrine and nervous tissues, although less widely than chromogranins.


Pssm-ID: 115071 [Multi-domain]  Cd Length: 261  Bit Score: 40.62  E-value: 4.49e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  380 APTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEP--APTTPKEPAPTTPKEPAPTTKkPEPTTPKE 457
Cdd:pfam06390   77 AQVFPEPSEPESDHEDEDFEPELARPECLEYDEDDFDTETDSETEPESdiESETEFETEPETEPDTAPTTE-PETEPEDE 155

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  458 PAPTTPKEPA---------PTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPK 528
Cdd:pfam06390  156 PGPVVPKGATfhqslterlHALKLQSADASPRRAPPSTQEPESAREGEEPERGPLDKDPRDPEEEEEEKEEEKQQPHRCK 235

                          170       180
                   ....*....|....*....|
gi 2002298153  529 EPAPTTPKEPAPTTPKEPAP 548
Cdd:pfam06390  236 PKKPARRRDPSPESPPKKGA 255
PRK12373 PRK12373
NADH-quinone oxidoreductase subunit E;
553-690 4.50e-03

NADH-quinone oxidoreductase subunit E;


Pssm-ID: 237082 [Multi-domain]  Cd Length: 400  Bit Score: 40.94  E-value: 4.50e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  553 EPA--PTTPKEPAPTTPKEPvpTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTT 630
Cdd:PRK12373   189 EPAggLTSLTEEAGKARYNA--SKALAEDIGDTVKRIDGTEVPLLAPWQGDAAPVPPSEAARPKSADAETNAALKTPATA 266

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  631 PKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPApttKKPELTIPKEPVpTTPKEPAP 690
Cdd:PRK12373   267 PKAAAKNAKAPEAQPVSGTAAAEPAPKEAAKAAAAA---AKPALEDKPRPL-GIARPGGA 322
PRK04654 PRK04654
sec-independent translocase; Provisional
 521-602 4.50e-03

sec-independent translocase; Provisional


Pssm-ID: 135173 [Multi-domain]  Cd Length: 214  Bit Score: 40.18  E-value: 4.50e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  521 EPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKepVPTTPKEPASTTPKE---PAPTTPKEPAPT 597
Cdd:PRK04654   132 EPGAGQAHTPVPAPAPVIAQAQPIAPAPHQTLVPAPHDTIVPAPHAAH--LPSAPATPVSVAPVDagtSASPTPSEPTKI 209


                   ....*
gi 2002298153  598 TPKEP 602
Cdd:PRK04654   210 QEKQP 214
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 646-711 4.53e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 40.82  E-value: 4.53e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2002298153  646 PKEPAPTTPKEPAPTTPKEPAPTTKKPELTIPKEPVPTTPKEPAPTTPKEPAPTTTKKPELSTPKE 711
Cdd:PTZ00144   124 PPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRE 189
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 498-573 4.56e-03

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 41.14  E-value: 4.56e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2002298153  498 PESTTPKEPAPTTPKEPAPTTP---KEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPT 573
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATPPPpaaPPSPPGDPPEPPAPEPAPLPAPYPGSLAPPPPPPPGPAGAAPGAALPVRVPAPP 97
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
 470-710 4.61e-03

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 468201 [Multi-domain]  Cd Length: 684  Bit Score: 41.15  E-value: 4.61e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  470 TPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAP-TTPKEPAPTTPKE-----PAPTTPKEPAPTTPKEPAP-TT 542
Cdd:NF033838   228 TDREKAEEEAKRRADAKLKEAVEKNVATSEQDKPKRRAKrGVLGEPATPDKKEndaksSDSSVGEETLPSPSLKPEKkVA 307

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  543 PKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPK------EPAPTTPKEPAPTTP-KEPAPTTPKEPAPTTP 615
Cdd:NF033838   308 EAEKKVEEAKKKAKDQKEEDRRNYPTNTYKTLELEIAESDVKvkeaelELVKEEAKEPRNEEKiKQAKAKVESKKAEATR 387

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  616 KEPAPTTPKEPALTTPKEPAPTPKEPE-PTTPKEPAPTT-PKEPAPTtPKEPA--PTTKKPELTIPKEP-VPTTPKEPAP 690
Cdd:NF033838   388 LEKIKTDRKKAEEEAKRKAAEEDKVKEkPAEQPQPAPAPqPEKPAPK-PEKPAeqPKAEKPADQQAEEDyARRSEEEYNR 466

                          250       260
                   ....*....|....*....|
gi 2002298153  691 TTPKEPaPTTTKKPELSTPK 710
Cdd:NF033838   467 LTQQQP-PKTEKPAQPSTPK 485
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
347-473 4.62e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 41.30  E-value: 4.62e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  347 KGPEPTSKePAPTTPKEPELTIPKEPAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESAPttPKEPAPTTPKEPAPTTPKE 426
Cdd:PRK14971   373 RGPKQHIK-PVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVD--PPAAVPVNPPSTAPQAVRP 449

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 2002298153  427 PAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKE 473
Cdd:PRK14971   450 AQFKEEKKIPVSKVSSLGPSTLRPIQEKAEQATGNIKEAPTGTQKEI 496
PRK11633 PRK11633
cell division protein DedD; Provisional
 351-448 4.64e-03

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 39.99  E-value: 4.64e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  351 PTSKEPAPTTPKEPELTIPKepAPTTKKPAPTTPKEPAPTTPKEPEPttpkesAPTTPKEPAPTTPKEPAPTTPK--EPA 428
Cdd:PRK11633    57 PAATQALPTQPPEGAAEAVR--AGDAAAPSLDPATVAPPNTPVEPEP------APVEPPKPKPVEKPKPKPKPQQkvEAP 128

                           90       100
                   ....*....|....*....|
gi 2002298153  429 PTTPKEPAPTTPKEPAPTTK 448
Cdd:PRK11633   129 PAPKPEPKPVVEEKAAPTGK 148
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 493-613 4.67e-03

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 41.25  E-value: 4.67e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  493 TTPKEPESTTPKEPAPTTPKEPAPTTPKEPA--PTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEP--APTTPK 568
Cdd:PHA03269    27 PIPELHTSAATQKPDPAPAPHQAASRAPDPAvaPTSAASRKPDLAQAPTPAASEKFDPAPAPHQAASRAPDPavAPQLAA 106

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 2002298153  569 EPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPT 613
Cdd:PHA03269   107 APKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSPPPF 151
flhF PRK06995
flagellar biosynthesis protein FlhF;
505-617 4.69e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 41.11  E-value: 4.69e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  505 EPAPTTPKEPAPTTPKEPAPTTPkEPAPtTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPK 584
Cdd:PRK06995    59 PAAAQPPPAAAPAAVSRPAAPAA-EPAP-WLVEHAKRLTAQREQLVARAAAPAAPEAQAPAAPAERAAAENAARRLARAA 136

                           90       100       110
                   ....*....|....*....|....*....|...
gi 2002298153  585 EPAPTTPkePAPTTPKEPAPTTPKEPAPTTPKE 617
Cdd:PRK06995   137 AAAPRPR--VPADAAAAVADAVKARIERIVNDT 167
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 466-597 4.71e-03

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 41.25  E-value: 4.71e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  466 PAPTTPKEPAPNTPKE---PAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPttpkepAPTTPKEPAPTT 542
Cdd:PHA03269    25 NIPIPELHTSAATQKPdpaPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAP------APHQAASRAPDP 98

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 2002298153  543 PKEPAPTTPKEPAPTTPKEPAPTTPKEPVpTTPKEPASTTPkEPAPTTPKEPAPT 597
Cdd:PHA03269    99 AVAPQLAAAPKPDAAEAFTSAAQAHEAPA-DAGTSAASKKP-DPAAHTQHSPPPF 151
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
549-632 4.79e-03

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 40.39  E-value: 4.79e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  549 TTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTtpKEPAPTTPKEPAPTTPKepAPTTPKEPAL 628
Cdd:PRK13042    23 TTTQAANATTPSSTKVEAPQSTPPSTKVEAPQSKPNATTPPSTKVEAPQ--QTPNATTPSSTKVETPQ--SPTTKQVPTE 98


                   ....
gi 2002298153  629 TTPK 632
Cdd:PRK13042    99 INPK 102
flhF PRK06995
flagellar biosynthesis protein FlhF;
467-572 4.85e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 41.11  E-value: 4.85e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  467 APTTPKEPAPNTPK-EPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPtTPKEPAPTTPKE 545
Cdd:PRK06995    52 APPAAAAPAAAQPPpAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPEAQAPAA-PAERAAAENAAR 130

                           90       100
                   ....*....|....*....|....*..
gi 2002298153  546 PAPTTPKEPAPTTPKEPAPTTPKEPVP 572
Cdd:PRK06995   131 RLARAAAAAPRPRVPADAAAAVADAVK 157
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
356-472 4.86e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 41.30  E-value: 4.86e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  356 PAPTTPKEPELTIPKEPAPTTKKPAPTTPkEPAPTTPKEPEPTTPKESApTTPKEPAPTTPKEPAPTTPKEPAPTTPKE- 434
Cdd:PRK14971   370 SGGRGPKQHIKPVFTQPAAAPQPSAAAAA-SPSPSQSSAAAQPSAPQSA-TQPAGTPPTVSVDPPAAVPVNPPSTAPQAv 447

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 2002298153  435 -PAPTTPKEPAPTTKKP-------EPTTPKEPAPTTPKEPAPTTPK 472
Cdd:PRK14971   448 rPAQFKEEKKIPVSKVSslgpstlRPIQEKAEQATGNIKEAPTGTQ 493
PHA02682 PHA02682
ORF080 virion core protein; Provisional
 447-626 4.89e-03

ORF080 virion core protein; Provisional


Pssm-ID: 177464 [Multi-domain]  Cd Length: 280  Bit Score: 40.61  E-value: 4.89e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  447 TKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAptTPKEPESTTPKEPAPTTPKePAPTTPKePAPTT 526
Cdd:PHA02682    27 TKCPQATIPAPAAPCPPDADVDPLDKYSVKEAGRYYQSRLKANSA--CMQRPSGQSPLAPSPACAA-PAPACPA-CAPAA 102

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  527 PKePAPTTPKePAPTTPKEPAPTTPKEPAPTTPKEPAPTTPkepvPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTT 606
Cdd:PHA02682   103 PA-PAVTCPA-PAPACPPATAPTCPPPAVCPAPARPAPACP----PSTRQCPPAPPLPTPKPAPAAKPIFLHNQLPPPDY 176

                          170       180
                   ....*....|....*....|
gi 2002298153  607 PKEPAPTTPKEPAPTTPKEP 626
Cdd:PHA02682   177 PAASCPTIETAPAASPVLEP 196
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
522-651 4.91e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 41.30  E-value: 4.91e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  522 PAPTTPKEPAPTTPKEPAPTTPkePAPTTPKEPAPTTPKEPAPTTPKEPVPTtpkePASTTPKEPAPTTPKEPAPTTPKE 601
Cdd:PRK14971   370 SGGRGPKQHIKPVFTQPAAAPQ--PSAAAAASPSPSQSSAAAQPSAPQSATQ----PAGTPPTVSVDPPAAVPVNPPSTA 443

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 2002298153  602 PAPTTPKEPAPTTPKEPAPTTPKEPALTTP-KEPAPTPKEPEPTTPKEPAP 651
Cdd:PRK14971   444 PQAVRPAQFKEEKKIPVSKVSSLGPSTLRPiQEKAEQATGNIKEAPTGTQK 494
PRK10856 PRK10856
cytoskeleton protein RodZ;
428-507 4.95e-03

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 40.78  E-value: 4.95e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  428 APTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPA 507
Cdd:PRK10856   169 TTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGVSTPA 248
PRK12727 PRK12727
flagellar biosynthesis protein FlhF;
293-495 4.98e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 237182 [Multi-domain]  Cd Length: 559  Bit Score: 41.13  E-value: 4.98e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  293 ASKKEKTTSAKETRSAENTSAKDVEPTSTTPKNSAPTTTKKPVTTTKEPVPTTTkgpEPTSKEPAPTTPKEPeltiPKEP 372
Cdd:PRK12727    57 TARSDTPATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQRQRVASAAEDMIA---AMALRQPVSVPRQAP----AAAP 129

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  373 APTTKKPAPTTPKE-PAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPE 451
Cdd:PRK12727   130 VRAASIPSPAAQALaHAAAVRTAPRQEHALSAVPEQLFADFLTTAPVPRAPVQAPVVAAPAPVPAIAAALAAHAAYAQDD 209

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*
gi 2002298153  452 PTTPKEPAPTTPKEPAPTTPKEPAPNTPKEP-APTTPKEPAPTTP 495
Cdd:PRK12727   210 DEQLDDDGFDLDDALPQILPPAALPPIVVAPaAPAALAAVAAAAP 254
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 443-513 4.98e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 40.82  E-value: 4.98e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2002298153  443 PAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKepaPTTPKEPAPTTPKEPESTTPKEPAPTTPKE 513
Cdd:PTZ00144   122 GAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASK---PTPPAAAKPPEPAPAAKPPPTPVARADPRE 189
PHA03321 PHA03321
tegument protein VP11/12; Provisional
 414-658 5.06e-03

tegument protein VP11/12; Provisional


Pssm-ID: 223041 [Multi-domain]  Cd Length: 694  Bit Score: 41.10  E-value: 5.06e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  414 TTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPkEPAPNTPkepapttPKEPAPT 493
Cdd:PHA03321   424 LLSSRQPPGAPAPRRDNDPPPPPRARPGSTPACARRARAQRARDAGPEYVDPLGALRR-LPAGAAP-------PPEPAAA 495

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  494 TPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE-PVP 572
Cdd:PHA03321   496 PSPATYYTRMGGGPPRLPPRNRATETLRPDWGPPAAAPPEQMEDPYLEPDDDRFDRRDGAAAAATSHPREAPAPDDdPIY 575

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  573 TTPKEPASTTPKE-PAPTTPKEPAPtTPKEPAPTTPKEPAPTtpkepAPTTPKEPALTTPKEPA---PTPKEPEPTTPKE 648
Cdd:PHA03321   576 EGVSDSEEPVYEEiPTPRVYQNPLP-RPMEGAGEPPDLDAPT-----SPWVEEENPIYGWGDSPlfsPPPAARFPPPDPA 649

                          250
                   ....*....|
gi 2002298153  649 PAPTTPKEPA 658
Cdd:PHA03321   650 LSPEPPALPA 659
flhF PRK06995
flagellar biosynthesis protein FlhF;
428-545 5.07e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 41.11  E-value: 5.07e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  428 APTTPKEPAPTTPK-EPAPTTKKPEPTTPKEPAPTtPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEP 506
Cdd:PRK06995    52 APPAAAAPAAAQPPpAAAPAAVSRPAAPAAEPAPW-LVEHAKRLTAQREQLVARAAAPAAPEAQAPAAPAERAAAENAAR 130

                           90       100       110
                   ....*....|....*....|....*....|....*....
gi 2002298153  507 APTTPKEPAPTTPkePAPTTPKEPAPTTPKEPAPTTPKE 545
Cdd:PRK06995   131 RLARAAAAAPRPR--VPADAAAAVADAVKARIERIVNDT 167
PTZ00441 PTZ00441
sporozoite surface protein 2 (SSP2); Provisional
 416-568 5.17e-03

sporozoite surface protein 2 (SSP2); Provisional


Pssm-ID: 240420 [Multi-domain]  Cd Length: 576  Bit Score: 41.10  E-value: 5.17e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  416 PKEPAPTTPKEPAPTTPKEPAPTTPKE----PAPTTKKPEPTTPKEPAPTtPKEPAPTTPKE-----PAPNTPKEPAPTT 486
Cdd:PTZ00441   283 PVEPEPLPVPAPVPPTPEDDNPRPTDDefavPNFNEGLDVPDNPQDPVPP-PNEGKDGNPNEenlfpPGDDEVPDESNVP 361

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  487 PKEPAPTTPKEPESTTPKEPAPTTPKEPAPTtpKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTT 566
Cdd:PTZ00441   362 PNPPNVPGGSNSEFSSDVENPPNPPNPDIPE--QEPNIPEDSNKEVPEDVPMEPEDDRDNNFNEPKKPENKGDGQNEPVI 439


                   ..
gi 2002298153  567 PK 568
Cdd:PTZ00441   440 PK 441
PRK06975 PRK06975
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
 562-611 5.17e-03

bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed


Pssm-ID: 235899 [Multi-domain]  Cd Length: 656  Bit Score: 41.24  E-value: 5.17e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 2002298153  562 PAPTTPKEPVPTTPKEPASTTPkEPAPTTPKEPAPTTPKEPAPTTPKEPA 611
Cdd:PRK06975   272 PATAAPAPSRMTDTNDSKSVTS-QPAAAAAAPAPPPNPPATPPEPPARRG 320
PRK11901 PRK11901
hypothetical protein; Reviewed
 577-658 5.24e-03

hypothetical protein; Reviewed


Pssm-ID: 237015 [Multi-domain]  Cd Length: 327  Bit Score: 40.44  E-value: 5.24e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  577 EPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTpkEPAPTTPKEPalTTPKEPAPTPKepePTTPKEPAPTTPKE 656
Cdd:PRK11901   169 GNTSTLPTAPATVAPSKGAKVPATAETHPTPPQKPATK--KPAVNHHKTA--TVAVPPATSGK---PKSGAASARALSSA 241


                   ..
gi 2002298153  657 PA 658
Cdd:PRK11901   242 PA 243
PRK11907 PRK11907
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
450-531 5.29e-03

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 40.99  E-value: 5.29e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  450 PEPTTPKEPAPTTPKEpapTTPKEPAPNTPKEPAPTTpkepAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 529
Cdd:PRK11907    34 TTPATSTEAEQTTPVE---SDATEEADNTETPVAATT----AAEAPSSSETAETSDPTSEATDTTTSEARTVTPAATETS 106


                   ..
gi 2002298153  530 PA 531
Cdd:PRK11907   107 KP 108
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 474-548 5.33e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 41.08  E-value: 5.33e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2002298153  474 PAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAP---TTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAP 548
Cdd:PRK14954   382 PSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPasaPTPEQQPPVARSAPLPPSPQASAPRNVASGKP 459
flhF PRK06995
flagellar biosynthesis protein FlhF;
603-699 5.33e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 40.72  E-value: 5.33e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  603 APTTPKEPAPTTPK-EPAPTTPKEPALTTPkEPAPTPKEP--EPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPELTIPKE 679
Cdd:PRK06995    52 APPAAAAPAAAQPPpAAAPAAVSRPAAPAA-EPAPWLVEHakRLTAQREQLVARAAAPAAPEAQAPAAPAERAAAENAAR 130

                           90       100
                   ....*....|....*....|
gi 2002298153  680 PVPTTPKEPAPTTPKEPAPT 699
Cdd:PRK06995   131 RLARAAAAAPRPRVPADAAA 150
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
609-669 5.37e-03

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 41.14  E-value: 5.37e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2002298153  609 EPAPTTPKEPAPTTPKEPALTTPKEPAPTPkEPEPTTPKEPaPTTPKEPAPTTPKEPAPTT 669
Cdd:COG5373     38 AEAAEAASAPAEPEPEAAAAATAAAPEAAP-APVPEAPAAP-PAAAEAPAPAAAAPPAEAE 96
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 578-656 5.47e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 40.82  E-value: 5.47e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2002298153  578 PASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTtPKEPAPTTPKEPAltTPKEPAPTPKEPEPTTPKEPAPTTPKE 656
Cdd:PTZ00144   114 PLSEIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAA-PTPEPPAASKPTP--PAAAKPPEPAPAAKPPPTPVARADPRE 189
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
565-647 5.52e-03

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 40.39  E-value: 5.52e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  565 TTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTtpKEPAPTTPKEPALTTPKEPApTPKEPEPT 644
Cdd:PRK13042    23 TTTQAANATTPSSTKVEAPQSTPPSTKVEAPQSKPNATTPPSTKVEAPQ--QTPNATTPSSTKVETPQSPT-TKQVPTEI 99


                   ...
gi 2002298153  645 TPK 647
Cdd:PRK13042   100 NPK 102
flhF PRK06995
flagellar biosynthesis protein FlhF;
475-579 5.52e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 40.72  E-value: 5.52e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  475 APNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPtTPKEPAPTTPKEP 554
Cdd:PRK06995    53 PPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPEAQAPAA-PAERAAAENAARR 131

                           90       100
                   ....*....|....*....|....*
gi 2002298153  555 APTTPKEPAPTTPKEPVPTTPKEPA 579
Cdd:PRK06995   132 LARAAAAAPRPRVPADAAAAVADAV 156
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 239-590 5.54e-03

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 40.71  E-value: 5.54e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  239 NKVTASPKTTAAKPVTPKPSLAPNSETSKEASSTSNKETTVETKETTETNKQSSASKKEKTTSAKETRSAENTSAKDVEP 318
Cdd:pfam17823   82 NSTEVTAEHTPHGTDLSEPATREGAADGAASRALAAAASSSPSSAAQSLPAAIAALPSEAFSAPRAAACRANASAAPRAA 161

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  319 TSTT--PK--NSAPTTTKKPVTTTKEPVPTTTKGPEPTSKEPAPTTPKEPELTipkePAPTTKKPAPTTPKEPAPTTPKE 394
Cdd:pfam17823  162 IAAAsaPHaaSPAPRTAASSTTAASSTTAASSAPTTAASSAPATLTPARGIST----AATATGHPAAGTALAAVGNSSPA 237

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  395 PEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKepAPTTPKEP 474
Cdd:pfam17823  238 AGTVTAAVGTVTPAALATLAAAAGTVASAAGTINMGDPHARRLSPAKHMPSDTMARNPAAPMGAQAQGPI--IQVSTDQP 315

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  475 APNTPKEPAPT-TPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEP-----APTTPKEPAPTTPKEPAP 548
Cdd:pfam17823  316 VHNTAGEPTPSpSNTTLEPNTPKSVASTNLAVVTTTKAQAKEPSASPVPVLHTSMIPeveatSPTTQPSPLLPTQGAAGP 395

                          330       340       350       360
                   ....*....|....*....|....*....|....*....|..
gi 2002298153  549 TTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTT 590
Cdd:pfam17823  396 GILLAPEQVATEATAGTASAGPTPRSSGDPKTLAMASCQLST 437
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
516-671 5.57e-03

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 40.80  E-value: 5.57e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  516 PTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTT---PKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPK 592
Cdd:pfam05539  168 PKTAVTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANqrlSSTEPVGTQGTTTSSNPEPQTEPPPSQRGPSGSP 247

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  593 EPAPTTPKEPAPTTP--KEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKepaPTTPKEPAPTTPKEPAPTTK 670
Cdd:pfam05539  248 QHPPSTTSQDQSTTGdgQEHTQRRKTPPATSNRRSPHSTATPPPTTKRQETGRPTPR---PTATTQSGSSPPHSSPPGVQ 324


                   .
gi 2002298153  671 K 671
Cdd:pfam05539  325 A 325
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 395-476 5.85e-03

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 40.76  E-value: 5.85e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  395 PEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPkePAPTTKKPEPTTPKEPAPTTPKEPAPttPKEP 474
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATPPPPAAPPSPPGDPPEPPAPEPAPLPA--PYPGSLAPPPPPPPGPAGAAPGAALP--VRVP 94


                   ..
gi 2002298153  475 AP 476
Cdd:NF041121    95 AP 96
motB PRK12799
flagellar motor protein MotB; Reviewed
 414-534 5.85e-03

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 40.85  E-value: 5.85e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  414 TTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPT 493
Cdd:PRK12799   295 THGTVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLPSDVTLPGTVALPAAEPVNM 374

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 2002298153  494 TPKEPESTTPKEPA--PTTPKEPAPTTPKEPAPTTPKEPAPTT 534
Cdd:PRK12799   375 QPQPMSTTETQQSStgNITSTANGPTTSLPAAPASNIPVSPTS 417
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
451-626 5.86e-03

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 40.80  E-value: 5.86e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  451 EPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPapTTPKEPESTTPKEPAPTTpkepapTTPKEPAPTTPKEP 530
Cdd:pfam05539  167 EPKTAVTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQT--ATANQRLSSTEPVGTQGT------TTSSNPEPQTEPPP 238

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  531 APTTPKepapTTPKEPAPTT-PKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTtpkePAPTTPKE 609
Cdd:pfam05539  239 SQRGPS----GSPQHPPSTTsQDQSTTGDGQEHTQRRKTPPATSNRRSPHSTATPPPTTKRQETGRPT----PRPTATTQ 310

                          170
                   ....*....|....*..
gi 2002298153  610 PAPTTPKEPAPTTPKEP 626
Cdd:pfam05539  311 SGSSPPHSSPPGVQANP 327
sucB TIGR01347
2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component); This ...
 560-684 5.88e-03

2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component); This model describes the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase. [Energy metabolism, TCA cycle]


Pssm-ID: 273565 [Multi-domain]  Cd Length: 403  Bit Score: 40.49  E-value: 5.88e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  560 KEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKepAPTTPKEPAlttPKEPAPTPK 639
Cdd:TIGR01347   60 KEGDTVESGQVLAILEEGNDATAAPPAKSGEEKEETPAASAAAAPTAAANRPSLSPA--ARRLAKEHG---IDLSAVPGT 134

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 2002298153  640 EPEPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEL-TIPKEPVPTT 684
Cdd:TIGR01347  135 GVTGRVTKEDIIKKTEAPASAQPPAAAAAAAAPAAaTRPEERVKMT 180
sucB TIGR01347
2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component); This ...
 454-574 6.04e-03

2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component); This model describes the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase. [Energy metabolism, TCA cycle]


Pssm-ID: 273565 [Multi-domain]  Cd Length: 403  Bit Score: 40.49  E-value: 6.04e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  454 TPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKepAPTTPKEPAPttpkEPAPTTPKEPAPT 533
Cdd:TIGR01347   66 ESGQVLAILEEGNDATAAPPAKSGEEKEETPAASAAAAPTAAANRPSLSPA--ARRLAKEHGI----DLSAVPGTGVTGR 139

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 2002298153  534 TPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTT 574
Cdd:TIGR01347  140 VTKEDIIKKTEAPASAQPPAAAAAAAAPAAATRPEERVKMT 180
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 299-432 6.16e-03

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 40.52  E-value: 6.16e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  299 TTSAKETRSAENTSAKDVEPTSTTPKNSAPTTTKKPVTTTKEPVPTTTKGPEPTSKEPAPTTPKEPELTIPKE-PAPTTK 377
Cdd:NF040712   200 ATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQPEDEPVGPGAAPAAEPDEaTRDAGE 279

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2002298153  378 KPAPTTPKEPAPTTPKEPEPTTPkeSAPTTPKEPAPTTPKEPAPTTPKEPA--PTTP 432
Cdd:NF040712   280 PPAPGAAETPEAAEPPAPAPAAP--AAPAAPEAEEPARPEPPPAPKPKRRRrrASVP 334
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 348-429 6.21e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 40.70  E-value: 6.21e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  348 GPEPTSKEPAPTTPKEPELTIPKEPApttkKPAPTTPKEPAPTTPKEPEP---TTPKESAPTTPKEPAPTTPKEPAPTTP 424
Cdd:PRK14954   379 GVAPSPAGSPDVKKKAPEPDLPQPDR----HPGPAKPEAPGARPAELPSPasaPTPEQQPPVARSAPLPPSPQASAPRNV 454


                   ....*
gi 2002298153  425 KEPAP 429
Cdd:PRK14954   455 ASGKP 459
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 514-637 6.24e-03

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 40.87  E-value: 6.24e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  514 PAPTTPKEPAPTTPK-EPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEP--APTT 590
Cdd:PHA03269    25 NIPIPELHTSAATQKpDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPAPHQAASRAPDPavAPQL 104

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 2002298153  591 PKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPT 637
Cdd:PHA03269   105 AAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSPPPF 151
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
469-552 6.24e-03

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 40.00  E-value: 6.24e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  469 TTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTtpKEPAPTTPKEPAPTTPKepAPTTPKEPAP 548
Cdd:PRK13042    23 TTTQAANATTPSSTKVEAPQSTPPSTKVEAPQSKPNATTPPSTKVEAPQ--QTPNATTPSSTKVETPQ--SPTTKQVPTE 98


                   ....
gi 2002298153  549 TTPK 552
Cdd:PRK13042    99 INPK 102
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
379-571 6.28e-03

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 40.89  E-value: 6.28e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  379 PAPTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEP 458
Cdd:COG3469     28 TAASVTLTAATATTVVSTTGSVVVAASGSAGSGTGTTAASSTAATSSTTSTTATATAAAAAATSTSATLVATSTASGANT 107

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  459 APTTPKEPAPTTPKEPAPNTPKEPAPTTpkepAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEP 538
Cdd:COG3469    108 GTSTVTTTSTGAGSVTSTTSSTAGSTTT----SGASATSSAGSTTTTTTVSGTETATGGTTTTSTTTTTTSASTTPSATT 183

                          170       180       190
                   ....*....|....*....|....*....|...
gi 2002298153  539 APTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPV 571
Cdd:COG3469    184 TATATTASGATTPSATTTATTTGPPTPGLPKHV 216
half-pint TIGR01645
poly-U binding splicing factor, half-pint family; The proteins represented by this model ...
 580-786 6.44e-03

poly-U binding splicing factor, half-pint family; The proteins represented by this model contain three RNA recognition motifs (rrm: pfam00076) and have been characterized as poly-pyrimidine tract binding proteins associated with RNA splicing factors. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.


Pssm-ID: 130706 [Multi-domain]  Cd Length: 612  Bit Score: 40.82  E-value: 6.44e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  580 STTPKEP--APTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPkepAPTTPKEP 657
Cdd:TIGR01645  281 CVTPPDAllQPATVSAIPAAAAVAAAAATAKIMAAEAVAGAAVLGPRAQSPATPSSSLPTDIGNKAVVS---SAKKEAEE 357

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  658 APTTPkEPAPTTKKPE-LTIPKE------PVPTTPKEPAPTTPKEPAPTTTKKPELSTPKEPTSTNPKEPEPTLP-KEPE 729
Cdd:TIGR01645  358 VPPLP-QAAPAVVKPGpMEIPTPvpppglAIPSLVAPPGLVAPTEINPSFLASPRKKMKREKLPVTFGALDDTLAwKEPS 436

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2002298153  730 LTLPEEPEPSNPETSDELIAELAEAPTPKALENNPKEptVPTETPEVSKPEMTTAKE 786
Cdd:TIGR01645  437 KEDQTSEDGKMLAIMGEAAAALALEPKKKKKEKEGEE--LQPKLVMNSEDASLASQE 491
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 343-413 6.49e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 40.70  E-value: 6.49e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2002298153  343 PTTTKGPEPTSKEPAPTTPKEPELTIPKEPAPTTKKPA-------PTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAP 413
Cdd:PRK14954   382 PSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAelpspasAPTPEQQPPVARSAPLPPSPQASAPRNVASGKP 459
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 543-613 6.50e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 40.44  E-value: 6.50e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2002298153  543 PKEPAPTTPKEPAPTTPKEPAPTTPKEpvptTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPT 613
Cdd:PTZ00144   124 PPAAAPAAAAAAKAEKTTPEKPKAAAP----TPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRET 190
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 366-517 6.85e-03

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 40.48  E-value: 6.85e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  366 LTIPKEPAPTTKKPAP-TTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPttpkepAPTTPKEPAPTTPKEPAPTTPKEPA 444
Cdd:PHA03269    10 ITIACINLIIANLNTNiPIPELHTSAATQKPDPAPAPHQAASRAPDPAV------APTSAASRKPDLAQAPTPAASEKFD 83

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2002298153  445 PTtkkPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPApTTPKEPESTTPkEPAPTTPKEPAPT 517
Cdd:PHA03269    84 PA---PAPHQAASRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPA-DAGTSAASKKP-DPAAHTQHSPPPF 151
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 595-717 6.88e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 40.74  E-value: 6.88e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  595 APTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPel 674
Cdd:PRK07764   385 LGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAP-- 462

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 2002298153  675 tiPKEPVPTTPKEPAPTTPKEPAPTTTKKPELSTPKEPTSTNP 717
Cdd:PRK07764   463 --SAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAP 503
Mitofilin pfam09731
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ...
 415-616 6.89e-03

Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.


Pssm-ID: 430783 [Multi-domain]  Cd Length: 618  Bit Score: 40.51  E-value: 6.89e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  415 TPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEP-----APTTPKEPApttPKEPAPNTPKEPAPTTPKE 489
Cdd:pfam09731   52 GEDPPLAPKPKTFRPLQPSVVSAVTGESKEPKEEKKQVKIPRQSgvsseVAEEEKEAT---KDAAEAKAQLPKSEQEKEK 128

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  490 PAPTTPKEpestTPKEPAPTTpKEPAPTTPKEPAPTTPKepaptTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 569
Cdd:pfam09731  129 ALEEVLKE----AISKAESAT-AVAKEAKDDAIQAVKAH-----TDSLKEASDTAEISREKATDSALQKAEALAEKLKEV 198

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*..
gi 2002298153  570 PVPTTPKEPASTTPKEPAPttPKEPAPTTPKEPAPTTPKEPAPTTPK 616
Cdd:pfam09731  199 INLAKQSEEEAAPPLLDAA--PETPPKLPEHLDNVEEKVEKAQSLAK 243
half-pint TIGR01645
poly-U binding splicing factor, half-pint family; The proteins represented by this model ...
 462-613 6.89e-03

poly-U binding splicing factor, half-pint family; The proteins represented by this model contain three RNA recognition motifs (rrm: pfam00076) and have been characterized as poly-pyrimidine tract binding proteins associated with RNA splicing factors. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.


Pssm-ID: 130706 [Multi-domain]  Cd Length: 612  Bit Score: 40.82  E-value: 6.89e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  462 TPKEP--APTTPKEPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPkepaPTTPKEPA 539
Cdd:TIGR01645  283 TPPDAllQPATVSAIPAAAAVAAAAATAKIMAAEAVAGAAVLGPRAQSPATPSSSLPTDIGNKAVVSS----AKKEAEEV 358

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2002298153  540 PTTPkePAPTTPKEPAPTTPKEPAPtTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPT 613
Cdd:TIGR01645  359 PPLP--QAAPAVVKPGPMEIPTPVP-PPGLAIPSLVAPPGLVAPTEINPSFLASPRKKMKREKLPVTFGALDDT 429
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
571-728 6.91e-03

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 40.42  E-value: 6.91e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  571 VPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPapTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPttPKEPA 650
Cdd:pfam05539  167 EPKTAVTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQT--ATANQRLSSTEPVGTQGTTTSSNPEPQTEPP--PSQRG 242

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2002298153  651 PTTPKEPAPTTPKEPAPTTKKPELTIPKEPVPTTPKEPAPTTPKEPAPTTTKKPELSTPK-EPTSTNPKEPEPTLPKEP 728
Cdd:pfam05539  243 PSGSPQHPPSTTSQDQSTTGDGQEHTQRRKTPPATSNRRSPHSTATPPPTTKRQETGRPTpRPTATTQSGSSPPHSSPP 321
PRK08691 PRK08691
DNA polymerase III subunits gamma and tau; Validated
 289-484 6.91e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236333 [Multi-domain]  Cd Length: 709  Bit Score: 40.85  E-value: 6.91e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  289 KQSSASKKEKTTSAK--ETRSAENTSAKDVEPTSTTPKNSAPTTTKKPVTTTKEPVPTTTKGPEPTsKEPAPTTPKePEL 366
Cdd:PRK08691   378 QSPSAQTAEKETAAKkpQPRPEAETAQTPVQTASAAAMPSEGKTAGPVSNQENNDVPPWEDAPDEA-QTAAGTAQT-SAK 455

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  367 TIPKEPAPTTKKPAPTTPKEPAPTTPKEPEPTTPKESapttpkePAPTTP-KEPAPTTPKEPAPTTPKEPAPTTPKEPAP 445
Cdd:PRK08691   456 SIQTASEAETPPENQVSKNKAADNETDAPLSEVPSEN-------PIQATPnDEAVETETFAHEAPAEPFYGYGFPDNDCP 528

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*
gi 2002298153  446 TTKKPEPTTP--KEPAPTTPKEPAPTTPKEPA----PNTPKEPAP 484
Cdd:PRK08691   529 PEDGAEIPPPdwEHAAPADTAGGGADEEAEAGgiggNNTPSAPPP 573
flhF PRK06995
flagellar biosynthesis protein FlhF;
578-668 6.96e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 40.33  E-value: 6.96e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  578 PASTTPKEPAPttPKEPAPTTPKEPAPTTPkEPAP---------TTPKEPAPTTPKEPALTTPKEPAPTPKEPEPTTPKE 648
Cdd:PRK06995    54 PAAAAPAAAQP--PPAAAPAAVSRPAAPAA-EPAPwlvehakrlTAQREQLVARAAAPAAPEAQAPAAPAERAAAENAAR 130

                           90       100
                   ....*....|....*....|
gi 2002298153  649 PAPTTPKEPAPTTPKEPAPT 668
Cdd:PRK06995   131 RLARAAAAAPRPRVPADAAA 150
sucB TIGR01347
2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component); This ...
 552-664 6.99e-03

2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component); This model describes the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase. [Energy metabolism, TCA cycle]


Pssm-ID: 273565 [Multi-domain]  Cd Length: 403  Bit Score: 40.49  E-value: 6.99e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  552 KEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTP------KEPAPTtpKEPAPTTPKE 625
Cdd:TIGR01347   60 KEGDTVESGQVLAILEEGNDATAAPPAKSGEEKEETPAASAAAAPTAAANRPSLSPaarrlaKEHGID--LSAVPGTGVT 137

                           90       100       110
                   ....*....|....*....|....*....|....*....
gi 2002298153  626 PALTtpKEPAPTPKEPEPTTPKEPAPTTPKEPAPTTPKE 664
Cdd:TIGR01347  138 GRVT--KEDIIKKTEAPASAQPPAAAAAAAAPAAATRPE 174
PRK12757 PRK12757
cell division protein FtsN; Provisional
 381-460 7.09e-03

cell division protein FtsN; Provisional


Pssm-ID: 237191 [Multi-domain]  Cd Length: 256  Bit Score: 39.64  E-value: 7.09e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  381 PTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTP--KEPAPTTPKEPAPTTPKEPAPTTKKPEPttPKEP 458
Cdd:PRK12757    99 PTQLSEVPYNEQTPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPprQTTAPVQPQTPAPVRTQPAAPVTQAVEA--PKVE 176


                   ..
gi 2002298153  459 AP 460
Cdd:PRK12757   177 AE 178
PHA03264 PHA03264
envelope glycoprotein D; Provisional
 581-696 7.13e-03

envelope glycoprotein D; Provisional


Pssm-ID: 223029 [Multi-domain]  Cd Length: 416  Bit Score: 40.37  E-value: 7.13e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  581 TTPKEPAPTTPKEPAPTtPKEPAPTTPKEPAPTTPKEPAPTTPKEPA-LTTPKEPAPTPKEPEPTTPKEPAPttpkepap 659
Cdd:PHA03264   253 VVPPYFEESKGYEPPPA-PSGGSPAPPGDDRPEAKPEPGPVEDGAPGrETGGEGEGPEPAGRDGAAGGEPKP-------- 323

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 2002298153  660 tTPKEPAPTTKKPELTIPKEPVPTTPkePAPTTPKEP 696
Cdd:PHA03264   324 -GPPRPAPDADRPEGWPSLEAITFPP--PTPATPAVP 357
PHA02682 PHA02682
ORF080 virion core protein; Provisional
 559-668 7.28e-03

ORF080 virion core protein; Provisional


Pssm-ID: 177464 [Multi-domain]  Cd Length: 280  Bit Score: 39.84  E-value: 7.28e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  559 PKEPAPTTPKEPVPTTPKEPASTTPKEPAP-TTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPT 637
Cdd:PHA02682    76 PSGQSPLAPSPACAAPAPACPACAPAAPAPaVTCPAPAPACPPATAPTCPPPAVCPAPARPAPACPPSTRQCPPAPPLPT 155

                           90       100       110
                   ....*....|....*....|....*....|....*.
gi 2002298153  638 PKEPEPTTP-----KEPAPTTPKEPAPTTPKEPAPT 668
Cdd:PHA02682   156 PKPAPAAKPiflhnQLPPPDYPAASCPTIETAPAAS 191
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 546-641 7.33e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 40.43  E-value: 7.33e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  546 PAPTTPKEPAPTTPKEPAPTTPKEPVPTTPkePASTTPKEPAPTTPkePAPTTPKEPAPTTPK-EPAPTTPKEPAPTTPK 624
Cdd:PRK14959   400 PGTQGPQGTAPAAGMTPSSAAPATPAPSAA--PSPRVPWDDAPPAP--PRSGIPPRPAPRMPEaSPVPGAPDSVASASDA 475

                           90
                   ....*....|....*...
gi 2002298153  625 EPALTTPKEPAP-TPKEP 641
Cdd:PRK14959   476 PPTLGDPSDTAEhTPSGP 493
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
530-655 7.45e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 40.53  E-value: 7.45e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  530 PAPTTPKEPAPTTPKEPAPTTPkePAPTTPKEPAPTTPKEPvPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKE 609
Cdd:PRK14971   370 SGGRGPKQHIKPVFTQPAAAPQ--PSAAAAASPSPSQSSAA-AQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQA 446

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 2002298153  610 PAPTTPKEPAPTTP-KEPALTTPKEPAPTPKEPEPTTPKEPAPTTPK 655
Cdd:PRK14971   447 VRPAQFKEEKKIPVsKVSSLGPSTLRPIQEKAEQATGNIKEAPTGTQ 493
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
533-616 7.51e-03

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 40.00  E-value: 7.51e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  533 TTPKEPAPTTPKEPAPTTPKEPAPTT-PKEPAPTtpkePVPTTPKEPASTTPKE-PAPTTPKEPAPTTPKepAPTTPKEP 610
Cdd:PRK13042    23 TTTQAANATTPSSTKVEAPQSTPPSTkVEAPQSK----PNATTPPSTKVEAPQQtPNATTPSSTKVETPQ--SPTTKQVP 96


                   ....*.
gi 2002298153  611 APTTPK 616
Cdd:PRK13042    97 TEINPK 102
PRK10856 PRK10856
cytoskeleton protein RodZ;
412-491 7.52e-03

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 40.01  E-value: 7.52e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  412 APTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPKEPAPNTPKEPAPTTPKEPA 491
Cdd:PRK10856   169 TTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGVSTPA 248
PRK04654 PRK04654
sec-independent translocase; Provisional
 529-610 7.77e-03

sec-independent translocase; Provisional


Pssm-ID: 135173 [Multi-domain]  Cd Length: 214  Bit Score: 39.41  E-value: 7.77e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  529 EPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPVPTTPKEP-ASTTPKEPAPTTPKEPAPTTPKEPAPTTP 607
Cdd:PRK04654   132 EPGAGQAHTPVPAPAPVIAQAQPIAPAPHQTLVPAPHDTIVPAPHAAHLPsAPATPVSVAPVDAGTSASPTPSEPTKIQE 211


                   ...
gi 2002298153  608 KEP 610
Cdd:PRK04654   212 KQP 214
PRK06975 PRK06975
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
 482-531 7.78e-03

bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed


Pssm-ID: 235899 [Multi-domain]  Cd Length: 656  Bit Score: 40.47  E-value: 7.78e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 2002298153  482 PAPTTPKEPAPTTPKEPESTTPkEPAPTTPKEPAPTTPKEPAPTTPKEPA 531
Cdd:PRK06975   272 PATAAPAPSRMTDTNDSKSVTS-QPAAAAAAPAPPPNPPATPPEPPARRG 320
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 239-543 7.85e-03

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 40.67  E-value: 7.85e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  239 NKVTASPKTTAAKPVTPKPSLAPNSETSKEASSTSNKETTVETKETTETNKQSSASKKEKTTSA-------------KET 305
Cdd:pfam05109  519 NATSPTPAVTTPTPNATSPTLGKTSPTSAVTTPTPNATSPTPAVTTPTPNATIPTLGKTSPTSAvttptpnatsptvGET 598

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  306 RSAENTSAKDVEPTSTTP------KNSAPTTTKKPVTTTKEPVPTTTKGPEPTSKEPAPTTPKEPELTIPKEPAPTTKKP 379
Cdd:pfam05109  599 SPQANTTNHTLGGTSSTPvvtsppKNATSAVTTGQHNITSSSTSSMSLRPSSISETLSPSTSDNSTSHMPLLTSAHPTGG 678

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  380 APTTPKEPAPTTPKEPEPTTPKESAPTTPKEPAPTTpkepapttpkEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPA 459
Cdd:pfam05109  679 ENITQVTPASTSTHHVSTSSPAPRPGTTSQASGPGN----------SSTSTKPGEVNVTKGTPPKNATSPQAPSGQKTAV 748

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  460 PTTPKEPAPTTPKEPAPNTPKEPAPTTPKepaPTTPKEPESTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPA 539
Cdd:pfam05109  749 PTVTSTGGKANSTTGGKHTTGHGARTSTE---PTTDYGGDSTTPRTRYNATTYLPPSTSSKLRPRWTFTSPPVTTAQATV 825


                   ....
gi 2002298153  540 PTTP 543
Cdd:pfam05109  826 PVPP 829
motB PRK12799
flagellar motor protein MotB; Reviewed
 565-692 7.91e-03

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 40.08  E-value: 7.91e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  565 TTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPKEPAPTPKEPEPT 644
Cdd:PRK12799   295 THGTVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLPSDVTLPGTVALPAAEPVNM 374

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 2002298153  645 TPKepaPTTPKEPAPTTPKEPAPTTKKPELTIPKEPVPTTPkePAPTT 692
Cdd:PRK12799   375 QPQ---PMSTTETQQSSTGNITSTANGPTTSLPAAPASNIP--VSPTS 417
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
422-512 8.20e-03

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 40.00  E-value: 8.20e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  422 TTPKEPAPTTPKEPAPTTPKEPAPTTKkpepttPKEPAPTtpkePAPTTPKEPAPNTPKE-PAPTTPKEPAPTTPKEPes 500
Cdd:PRK13042    23 TTTQAANATTPSSTKVEAPQSTPPSTK------VEAPQSK----PNATTPPSTKVEAPQQtPNATTPSSTKVETPQSP-- 90

                           90
                   ....*....|..
gi 2002298153  501 TTPKEPAPTTPK 512
Cdd:PRK13042    91 TTKQVPTEINPK 102
PHA01929 PHA01929
putative scaffolding protein
 424-517 8.24e-03

putative scaffolding protein


Pssm-ID: 177328  Cd Length: 306  Bit Score: 40.04  E-value: 8.24e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  424 PKEPAPTTPKEPAPTTPKEPAPTTKKPEPTTPKEPA-------PTTPKEPAPTTPKEP--APNTPKEPAPTTPKEPAPTT 494
Cdd:PHA01929    10 PGLAGLVANVPPAAAPTPQPNPVIQPQAPVQPGQPGapqqlaiPTQQPQPVPTSAMTPhvVQQAPAQPAPAAPPAAGAAL 89

                           90       100
                   ....*....|....*....|...
gi 2002298153  495 PKEPEstTPKEPAPTTPKEPAPT 517
Cdd:PHA01929    90 PEALE--VPPPPAFTPNGEIVGT 110
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 573-652 8.49e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 40.05  E-value: 8.49e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  573 TTPKEPAsttPKEPAPTTPKEPAPTTPKEPAPttpkEPAPTTPKEPAPTTPKEPAltTPKEPAPTPKEPEPTTPKEPAPT 652
Cdd:PTZ00144   120 TGGAPPA---AAPAAAAAAKAEKTTPEKPKAA----APTPEPPAASKPTPPAAAK--PPEPAPAAKPPPTPVARADPRET 190
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 593-657 8.64e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 40.05  E-value: 8.64e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2002298153  593 EPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKepalttPKEPAPTPKEPEPTTPKEPAPTTPKEP 657
Cdd:PTZ00144   123 APPAAAPAAAAAAKAEKTTPEKPKAAAPTPEP------PAASKPTPPAAAKPPEPAPAAKPPPTP 181
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
556-729 8.64e-03

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 40.03  E-value: 8.64e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  556 PTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTT---PKEPAPTTPKEPAPTTPKEPAPTTPKEPALTTPK 632
Cdd:pfam05539  168 PKTAVTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANqrlSSTEPVGTQGTTTSSNPEPQTEPPPSQRGPSGSP 247

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  633 EPAPTPKEPEPTTPKEPAPTTPKEPAPTT---PKEPAPTTKKPELTIPKEPVPTTPKepaPTTPKEPAPTTTKKPELSTP 709
Cdd:pfam05539  248 QHPPSTTSQDQSTTGDGQEHTQRRKTPPAtsnRRSPHSTATPPPTTKRQETGRPTPR---PTATTQSGSSPPHSSPPGVQ 324

                          170       180
                   ....*....|....*....|
gi 2002298153  710 KEPTSTNPKEPEPTLPKEPE 729
Cdd:pfam05539  325 ANPTTQNLVDCKELDPPKPN 344
flhF PRK06995
flagellar biosynthesis protein FlhF;
538-656 9.00e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 40.33  E-value: 9.00e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  538 PAPTTPKEPAPttPKEPAPTTPKEPAPTTPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTTPkePAPTTPKEPAPTTPKe 617
Cdd:PRK06995    54 PAAAAPAAAQP--PPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPEA--QAPAAPAERAAAENA- 128

                           90       100       110
                   ....*....|....*....|....*....|....*....
gi 2002298153  618 PAPTTPKEPALTTPKEPAPTPKEPEPTTPKEPAPTTPKE 656
Cdd:PRK06995   129 ARRLARAAAAAPRPRVPADAAAAVADAVKARIERIVNDT 167
PHA03264 PHA03264
envelope glycoprotein D; Provisional
 549-653 9.08e-03

envelope glycoprotein D; Provisional


Pssm-ID: 223029 [Multi-domain]  Cd Length: 416  Bit Score: 39.99  E-value: 9.08e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  549 TTPKEPAPTTPKEPAPTtPKEPVPTTPKEPASTTPKEPAPTTPKEPAPTT---PKEPAPTTPKEPAPTTPKePAPTTPKE 625
Cdd:PHA03264   253 VVPPYFEESKGYEPPPA-PSGGSPAPPGDDRPEAKPEPGPVEDGAPGRETggeGEGPEPAGRDGAAGGEPK-PGPPRPAP 330

                           90       100
                   ....*....|....*....|....*...
gi 2002298153  626 PALTTPKEPAPTPKEPEPTTPKEPAPTT 653
Cdd:PHA03264   331 DADRPEGWPSLEAITFPPPTPATPAVPR 358
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
604-690 9.09e-03

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 40.55  E-value: 9.09e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  604 PTTPKEPAPTTPKEPAPTTPKepalttPKEPAPT-PKEPEPTTPkEPAPTTPKEPAPTTPKEPAPTTkkPELTIPKEPvP 682
Cdd:PRK15313   560 PDEPIIPDPVDPVIPDPVIPD------PVDPDPVdPVIPDPVIP-DPVDPDPVDPEPVDPVIPDPTI--PDIGQSDTP-P 629


                   ....*...
gi 2002298153  683 TTPKEPAP 690
Cdd:PRK15313   630 ITEHQFRP 637
ftsN TIGR02223
cell division protein FtsN; FtsN is a poorly conserved protein active in cell division in a ...
 366-523 9.27e-03

cell division protein FtsN; FtsN is a poorly conserved protein active in cell division in a number of Proteobacteria. The N-terminal 30 residue region tends to by Lys/Arg-rich, and is followed by a membrane-spanning region. This is followed by an acidic low-complexity region of variable length and a well-conserved C-terminal domain of two tandem regions matched by pfam05036 (Sporulation related repeat), found in several cell division and sporulation proteins. The role of FtsN as a suppressor for other cell division mutations is poorly understood; it may involve cell wall hydrolysis. [Cellular processes, Cell division]


Pssm-ID: 274041 [Multi-domain]  Cd Length: 298  Bit Score: 39.67  E-value: 9.27e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  366 LTIPKEPAPTTKKPAPTTPKEPAPTTPKEPEP------------TTPKESAPTTP------KEPAPTTPKEPAPTTPKEP 427
Cdd:TIGR02223   48 LTESKQANEPETLQPKNQTENGETAADLPPKPeerwsyieeleaREVLINDPEEPsngggvEESAQLTAEQRQLLEQMQA 127

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  428 APTTPKEPAPTTPKEPAPTTKKPEPTTPKEPAPTTPKEPAPTTPK-EPAPNTPKEPAPTTPKEPAPTTPKEPESTTPKEP 506
Cdd:TIGR02223  128 DMRAAEKVLATAPSEQTVAVEARKQTAEKKPQKARTAEAQKTPVEtEKIASKVKEAKQKQKALPKQTAETQSNSKPIETA 207

                          170
                   ....*....|....*..
gi 2002298153  507 APTTPKEPAPTTPKEPA 523
Cdd:TIGR02223  208 PKADKADKTKPKPKEKA 224
PRK13335 PRK13335
superantigen-like protein SSL3; Reviewed;
526-624 9.57e-03

superantigen-like protein SSL3; Reviewed;


Pssm-ID: 139494 [Multi-domain]  Cd Length: 356  Bit Score: 39.72  E-value: 9.57e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  526 TPK-EPAPTTPKEPAPTTPKEPAPTTPKEPAPTTpKEPAPTTPKEPVPTTpkEPASTTPKepaPTTPKEPAPTTPKEPAP 604
Cdd:PRK13335    73 TPKlEKAPNTNEEKTSASKIEKISQPKQEEQKSL-NISATPAPKQEQSQT--TTESTTPK---TKVTTPPSTNTPQPMQS 146

                           90       100
                   ....*....|....*....|.
gi 2002298153  605 TTPKEP-APTTPKEPAPTTPK 624
Cdd:PRK13335   147 TKSDTPqSPTIKQAQTDMTPK 167
flhF PRK06995
flagellar biosynthesis protein FlhF;
357-473 9.63e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 39.95  E-value: 9.63e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  357 APTTPKEPELTIPK-EPAPTTKKPAPTTPKEPAPTtPKEPEPTTPKESAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEP 435
Cdd:PRK06995    52 APPAAAAPAAAQPPpAAAPAAVSRPAAPAAEPAPW-LVEHAKRLTAQREQLVARAAAPAAPEAQAPAAPAERAAAENAAR 130

                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 2002298153  436 APTTPKEPAPTTKkPEPTTPKEPAPTTPKEPAPTTPKE 473
Cdd:PRK06995   131 RLARAAAAAPRPR-VPADAAAAVADAVKARIERIVNDT 167
PRK12757 PRK12757
cell division protein FtsN; Provisional
 564-642 9.69e-03

cell division protein FtsN; Provisional


Pssm-ID: 237191 [Multi-domain]  Cd Length: 256  Bit Score: 39.26  E-value: 9.69e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2002298153  564 PTTPKEpVP---TTPKEPASTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTPKEPA-LTTPKEPAPTPK 639
Cdd:PRK12757    99 PTQLSE-VPyneQTPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAApVTQAVEAPKVEA 177


                   ...
gi 2002298153  640 EPE 642
Cdd:PRK12757   178 EKE 180
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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