zinc finger protein 40 [Rattus norvegicus]
C2H2-type zinc finger protein( domain architecture ID 11215278)
Cys2His2 (C2H2)-type zinc finger protein may be involved in transcriptional regulation; similar to Homo sapiens transcription factor HIVEP3
List of domain hits
Name | Accession | Description | Interval | E-value | |||||||
PHA03247 super family | cl33720 | large tegument protein UL36; Provisional |
2272-2662 | 3.49e-09 | |||||||
large tegument protein UL36; Provisional The actual alignment was detected with superfamily member PHA03247: Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 63.03 E-value: 3.49e-09
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zf-H2C2_2 | pfam13465 | Zinc-finger double domain; |
2086-2111 | 6.17e-06 | |||||||
Zinc-finger double domain; : Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 44.67 E-value: 6.17e-06
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zf-H2C2_2 | pfam13465 | Zinc-finger double domain; |
422-446 | 6.17e-05 | |||||||
Zinc-finger double domain; : Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 41.97 E-value: 6.17e-05
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zf-C2H2 | pfam00096 | Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ... |
2072-2094 | 1.62e-04 | |||||||
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter. : Pssm-ID: 395048 [Multi-domain] Cd Length: 23 Bit Score: 40.75 E-value: 1.62e-04
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ZnF_U1 | smart00451 | U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ... |
2097-2128 | 6.79e-03 | |||||||
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins. : Pssm-ID: 197732 [Multi-domain] Cd Length: 35 Bit Score: 36.46 E-value: 6.79e-03
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Name | Accession | Description | Interval | E-value | |||||||
PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
2272-2662 | 3.49e-09 | |||||||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 63.03 E-value: 3.49e-09
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zf-H2C2_2 | pfam13465 | Zinc-finger double domain; |
2086-2111 | 6.17e-06 | |||||||
Zinc-finger double domain; Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 44.67 E-value: 6.17e-06
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zf-H2C2_2 | pfam13465 | Zinc-finger double domain; |
422-446 | 6.17e-05 | |||||||
Zinc-finger double domain; Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 41.97 E-value: 6.17e-05
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zf-C2H2 | pfam00096 | Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ... |
2072-2094 | 1.62e-04 | |||||||
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter. Pssm-ID: 395048 [Multi-domain] Cd Length: 23 Bit Score: 40.75 E-value: 1.62e-04
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ZnF_C2H2 | smart00355 | zinc finger; |
2100-2121 | 1.83e-03 | |||||||
zinc finger; Pssm-ID: 197676 Cd Length: 23 Bit Score: 37.83 E-value: 1.83e-03
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DUF5585 | pfam17823 | Family of unknown function (DUF5585); This is a family of unknown function found in chordata. |
2299-2636 | 2.22e-03 | |||||||
Family of unknown function (DUF5585); This is a family of unknown function found in chordata. Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 43.41 E-value: 2.22e-03
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ZnF_C2H2 | smart00355 | zinc finger; |
435-457 | 5.35e-03 | |||||||
zinc finger; Pssm-ID: 197676 Cd Length: 23 Bit Score: 36.29 E-value: 5.35e-03
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ZnF_U1 | smart00451 | U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ... |
2097-2128 | 6.79e-03 | |||||||
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins. Pssm-ID: 197732 [Multi-domain] Cd Length: 35 Bit Score: 36.46 E-value: 6.79e-03
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ZnF_C2H2 | smart00355 | zinc finger; |
2072-2094 | 7.25e-03 | |||||||
zinc finger; Pssm-ID: 197676 Cd Length: 23 Bit Score: 35.90 E-value: 7.25e-03
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Name | Accession | Description | Interval | E-value | |||||||
PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
2272-2662 | 3.49e-09 | |||||||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 63.03 E-value: 3.49e-09
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PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
2271-2666 | 1.31e-07 | |||||||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 57.64 E-value: 1.31e-07
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zf-H2C2_2 | pfam13465 | Zinc-finger double domain; |
2086-2111 | 6.17e-06 | |||||||
Zinc-finger double domain; Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 44.67 E-value: 6.17e-06
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zf-H2C2_2 | pfam13465 | Zinc-finger double domain; |
422-446 | 6.17e-05 | |||||||
Zinc-finger double domain; Pssm-ID: 463886 [Multi-domain] Cd Length: 26 Bit Score: 41.97 E-value: 6.17e-05
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zf-C2H2 | pfam00096 | Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ... |
2072-2094 | 1.62e-04 | |||||||
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter. Pssm-ID: 395048 [Multi-domain] Cd Length: 23 Bit Score: 40.75 E-value: 1.62e-04
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PRK07764 | PRK07764 | DNA polymerase III subunits gamma and tau; Validated |
2289-2670 | 4.38e-04 | |||||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 45.75 E-value: 4.38e-04
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zf-C2H2 | pfam00096 | Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ... |
2100-2121 | 4.91e-04 | |||||||
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter. Pssm-ID: 395048 [Multi-domain] Cd Length: 23 Bit Score: 39.21 E-value: 4.91e-04
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PRK07764 | PRK07764 | DNA polymerase III subunits gamma and tau; Validated |
2303-2670 | 5.94e-04 | |||||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 45.36 E-value: 5.94e-04
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ZnF_C2H2 | smart00355 | zinc finger; |
2100-2121 | 1.83e-03 | |||||||
zinc finger; Pssm-ID: 197676 Cd Length: 23 Bit Score: 37.83 E-value: 1.83e-03
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DUF5585 | pfam17823 | Family of unknown function (DUF5585); This is a family of unknown function found in chordata. |
2299-2636 | 2.22e-03 | |||||||
Family of unknown function (DUF5585); This is a family of unknown function found in chordata. Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 43.41 E-value: 2.22e-03
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ZnF_C2H2 | smart00355 | zinc finger; |
435-457 | 5.35e-03 | |||||||
zinc finger; Pssm-ID: 197676 Cd Length: 23 Bit Score: 36.29 E-value: 5.35e-03
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ZnF_U1 | smart00451 | U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ... |
2097-2128 | 6.79e-03 | |||||||
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins. Pssm-ID: 197732 [Multi-domain] Cd Length: 35 Bit Score: 36.46 E-value: 6.79e-03
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ZnF_C2H2 | smart00355 | zinc finger; |
2072-2094 | 7.25e-03 | |||||||
zinc finger; Pssm-ID: 197676 Cd Length: 23 Bit Score: 35.90 E-value: 7.25e-03
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PRK10263 | PRK10263 | DNA translocase FtsK; Provisional |
2499-2665 | 8.80e-03 | |||||||
DNA translocase FtsK; Provisional Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 41.61 E-value: 8.80e-03
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Blast search parameters | ||||
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