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Conserved domains on  [gi|189011659|ref|NP_001098055|]
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prothrombin precursor [Macaca mulatta]

Protein Classification

coagulation factor; serine protease( domain architecture ID 10637891)

coagulation factor is a vitamin K-dependent protein S1 family serine peptidase, similar to human coagulation factor X that converts prothrombin to thrombin in the presence of factor Va, calcium and phospholipid during blood clotting| trypsin-like serine protease catalyzes the cleavage of specific peptide bonds in protein substrates using an active site serine as the nucleophile; contains C-terminal DNA polymerase III subunits gamma and tau

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Tryp_SPc cd00190
Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens ...
369-621 2.45e-89

Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.


:

Pssm-ID: 238113 [Multi-domain]  Cd Length: 232  Bit Score: 276.85  E-value: 2.45e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011659 369 IVEGWDAEIGMSPWQVMLFRKSPQeLLCGASLISDRWVLTAAHCLLyppwdkNFTENDLLVRIGKHSRTRYERNIEKISm 448
Cdd:cd00190    1 IVGGSEAKIGSFPWQVSLQYTGGR-HFCGGSLISPRWVLTAAHCVY------SSAPSNYTVRLGSHDLSSNEGGGQVIK- 72
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011659 449 LEKIYIHPRYNWReNLDRDIALMKLKKPITFSDYIHPVCLPDREtaaSLFQAGYKGRVTGWGnlketwTTNVGKVQPSVL 528
Cdd:cd00190   73 VKKVIVHPNYNPS-TYDNDIALLKLKRPVTLSDNVRPICLPSSG---YNLPAGTTCTVSGWG------RTSEGGPLPDVL 142
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011659 529 QVVNLPIVERSVCKDSTR--IRITDNMFCAGYKPGeGKrgDACEGDSGGPFVMKNplNKRWYQMGIVSWGEGCDRDGKYG 606
Cdd:cd00190  143 QEVNVPIVSNAECKRAYSygGTITDNMLCAGGLEG-GK--DACQGDSGGPLVCND--NGRGVLVGIVSWGSGCARPNYPG 217
                        250
                 ....*....|....*
gi 189011659 607 FYTHVFRLKKWIQKV 621
Cdd:cd00190  218 VYTRVSSYLDWIQKT 232
KR cd00108
Kringle domain; Kringle domains are believed to play a role in binding mediators, such as ...
113-194 1.99e-35

Kringle domain; Kringle domains are believed to play a role in binding mediators, such as peptides, other proteins, membranes, or phospholipids. They are autonomous structural domains, found in a varying number of copies, in blood clotting and fibrinolytic proteins, some serine proteases and plasma proteins. Plasminogen-like kringles possess affinity for free lysine and lysine-containing peptides.


:

Pssm-ID: 238056  Cd Length: 83  Bit Score: 128.26  E-value: 1.99e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011659 113 EGNCAEDLGTNYRGHVNITRSGIECQLWRSRYPHKPEINSTTHPGADLQENFCRNPDSSTTGPWCYTTDPTVRREECSIP 192
Cdd:cd00108    1 TRDCYWGNGESYRGTVSTTKSGKPCQRWNSQLPHQHKFNPERFPEGLLEENYCRNPDGDPEGPWCYTTDPNVRWEYCDIP 80

                 ..
gi 189011659 193 VC 194
Cdd:cd00108   81 RC 82
Thrombin_light pfam09396
Thrombin light chain; Thrombin is an enzyme that cleaves bonds after Arg and Lys, converts ...
321-368 2.55e-28

Thrombin light chain; Thrombin is an enzyme that cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII. Prothrombin is activated on the surface of a phospholipid membrane where factor Xa removes the activation peptide and cleaves the remaining part into light and heavy chains. This domain corresponds to the light chain of thrombin.


:

Pssm-ID: 430582  Cd Length: 48  Bit Score: 106.99  E-value: 2.55e-28
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 189011659  321 ATSEYQTFFDPRTFGLGEADCGLRPLFEKKSLEDKTEGELLESYIDGR 368
Cdd:pfam09396   1 TTEEFKTFFNPRTFGAGEADCGLRPLFEKKSKKDKTEKELLESYIGGR 48
KR smart00130
Kringle domain; Named after a Danish pastry. Found in several serine proteases and in ROR-like ...
216-298 2.90e-28

Kringle domain; Named after a Danish pastry. Found in several serine proteases and in ROR-like receptors. Can occur in up to 38 copies (in apolipoprotein(a)). Plasminogen-like kringles possess affinity for free lysine and lysine- containing peptides.


:

Pssm-ID: 214527  Cd Length: 83  Bit Score: 108.25  E-value: 2.90e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011659   216 EECVPDRGRQYQGHLAVTTHGLPCLAWASAQAKALSKHQDFDSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFEYCDLNY 295
Cdd:smart00130   1 RECYAGNGESYRGTVSVTKSGKPCQRWDSQTPHLHRFTPESFPDLGLEENYCRNPDGDSEGPWCYTTDPNVRWEYCDIPQ 80

                   ...
gi 189011659   296 CEE 298
Cdd:smart00130  81 CEE 83
GLA smart00069
Domain containing Gla (gamma-carboxyglutamate) residues; A hyaluronan-binding domain found in ...
32-96 1.24e-23

Domain containing Gla (gamma-carboxyglutamate) residues; A hyaluronan-binding domain found in proteins associated with the extracellular matrix, cell adhesion and cell migration.


:

Pssm-ID: 214503  Cd Length: 65  Bit Score: 94.30  E-value: 1.24e-23
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 189011659    32 QQVFLAPQQALSLLQRVRRASSGFLEEVFKGNLERECVEETCSYEEAFEALESSTATDAFWAKYT 96
Cdd:smart00069   1 GSVFLSRQEANKVLRRQRRANAFLLEELRPGNLERECQEEICSLEEAREVFEDNEGTDEFYRRYY 65
 
Name Accession Description Interval E-value
Tryp_SPc cd00190
Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens ...
369-621 2.45e-89

Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.


Pssm-ID: 238113 [Multi-domain]  Cd Length: 232  Bit Score: 276.85  E-value: 2.45e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011659 369 IVEGWDAEIGMSPWQVMLFRKSPQeLLCGASLISDRWVLTAAHCLLyppwdkNFTENDLLVRIGKHSRTRYERNIEKISm 448
Cdd:cd00190    1 IVGGSEAKIGSFPWQVSLQYTGGR-HFCGGSLISPRWVLTAAHCVY------SSAPSNYTVRLGSHDLSSNEGGGQVIK- 72
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011659 449 LEKIYIHPRYNWReNLDRDIALMKLKKPITFSDYIHPVCLPDREtaaSLFQAGYKGRVTGWGnlketwTTNVGKVQPSVL 528
Cdd:cd00190   73 VKKVIVHPNYNPS-TYDNDIALLKLKRPVTLSDNVRPICLPSSG---YNLPAGTTCTVSGWG------RTSEGGPLPDVL 142
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011659 529 QVVNLPIVERSVCKDSTR--IRITDNMFCAGYKPGeGKrgDACEGDSGGPFVMKNplNKRWYQMGIVSWGEGCDRDGKYG 606
Cdd:cd00190  143 QEVNVPIVSNAECKRAYSygGTITDNMLCAGGLEG-GK--DACQGDSGGPLVCND--NGRGVLVGIVSWGSGCARPNYPG 217
                        250
                 ....*....|....*
gi 189011659 607 FYTHVFRLKKWIQKV 621
Cdd:cd00190  218 VYTRVSSYLDWIQKT 232
Tryp_SPc smart00020
Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens ...
368-618 4.99e-88

Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues.


Pssm-ID: 214473  Cd Length: 229  Bit Score: 273.40  E-value: 4.99e-88
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011659   368 RIVEGWDAEIGMSPWQVMLFRKSPQeLLCGASLISDRWVLTAAHCLLyppwdkNFTENDLLVRIGKHSRTRYERNIekIS 447
Cdd:smart00020   1 RIVGGSEANIGSFPWQVSLQYGGGR-HFCGGSLISPRWVLTAAHCVR------GSDPSNIRVRLGSHDLSSGEEGQ--VI 71
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011659   448 MLEKIYIHPRYNwRENLDRDIALMKLKKPITFSDYIHPVCLPDretAASLFQAGYKGRVTGWGNlketwTTNVGKVQPSV 527
Cdd:smart00020  72 KVSKVIIHPNYN-PSTYDNDIALLKLKEPVTLSDNVRPICLPS---SNYNVPAGTTCTVSGWGR-----TSEGAGSLPDT 142
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011659   528 LQVVNLPIVERSVCKD--STRIRITDNMFCAGYkPGEGKrgDACEGDSGGPFVMKNPlnkRWYQMGIVSWGEGCDRDGKY 605
Cdd:smart00020 143 LQEVNVPIVSNATCRRaySGGGAITDNMLCAGG-LEGGK--DACQGDSGGPLVCNDG---RWVLVGIVSWGSGCARPGKP 216
                          250
                   ....*....|...
gi 189011659   606 GFYTHVFRLKKWI 618
Cdd:smart00020 217 GVYTRVSSYLDWI 229
Trypsin pfam00089
Trypsin;
369-618 1.83e-73

Trypsin;


Pssm-ID: 459667 [Multi-domain]  Cd Length: 219  Bit Score: 235.03  E-value: 1.83e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011659  369 IVEGWDAEIGMSPWQVMLFRKSPQeLLCGASLISDRWVLTAAHCLLYPPwdknftenDLLVRIGKHSRTRYERNIEKISM 448
Cdd:pfam00089   1 IVGGDEAQPGSFPWQVSLQLSSGK-HFCGGSLISENWVLTAAHCVSGAS--------DVKVVLGAHNIVLREGGEQKFDV 71
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011659  449 lEKIYIHPRYNWReNLDRDIALMKLKKPITFSDYIHPVCLPDretAASLFQAGYKGRVTGWGNLKETWTtnvgkvqPSVL 528
Cdd:pfam00089  72 -EKIIVHPNYNPD-TLDNDIALLKLESPVTLGDTVRPICLPD---ASSDLPVGTTCTVSGWGNTKTLGP-------SDTL 139
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011659  529 QVVNLPIVERSVCKDSTRIRITDNMFCAGYKpgegkRGDACEGDSGGPFVMKNPlnkrwYQMGIVSWGEGCDRDGKYGFY 608
Cdd:pfam00089 140 QEVTVPVVSRETCRSAYGGTVTDTMICAGAG-----GKDACQGDSGGPLVCSDG-----ELIGIVSWGYGCASGNYPGVY 209
                         250
                  ....*....|
gi 189011659  609 THVFRLKKWI 618
Cdd:pfam00089 210 TPVSSYLDWI 219
COG5640 COG5640
Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, ...
368-626 1.28e-59

Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444365 [Multi-domain]  Cd Length: 262  Bit Score: 200.26  E-value: 1.28e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011659 368 RIVEGWDAEIGMSPWQVMLFRKS-PQELLCGASLISDRWVLTAAHCLlyppwdKNFTENDLLVRIGKHSRTRYERNIEKI 446
Cdd:COG5640   30 AIVGGTPATVGEYPWMVALQSSNgPSGQFCGGTLIAPRWVLTAAHCV------DGDGPSDLRVVIGSTDLSTSGGTVVKV 103
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011659 447 SmleKIYIHPRYNWReNLDRDIALMKLKKPITFSDYIHpvcLPDRETAASlfqAGYKGRVTGWGNLKETWTTnvgkvQPS 526
Cdd:COG5640  104 A---RIVVHPDYDPA-TPGNDIALLKLATPVPGVAPAP---LATSADAAA---PGTPATVAGWGRTSEGPGS-----QSG 168
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011659 527 VLQVVNLPIVERSVCKDSTRIrITDNMFCAGYKPGegkRGDACEGDSGGPFVMKNplNKRWYQMGIVSWGEGCDRDGKYG 606
Cdd:COG5640  169 TLRKADVPVVSDATCAAYGGF-DGGTMLCAGYPEG---GKDACQGDSGGPLVVKD--GGGWVLVGVVSWGGGPCAAGYPG 242
                        250       260
                 ....*....|....*....|
gi 189011659 607 FYTHVFRLKKWIQKVIDQFG 626
Cdd:COG5640  243 VYTRVSAYRDWIKSTAGGLG 262
KR cd00108
Kringle domain; Kringle domains are believed to play a role in binding mediators, such as ...
113-194 1.99e-35

Kringle domain; Kringle domains are believed to play a role in binding mediators, such as peptides, other proteins, membranes, or phospholipids. They are autonomous structural domains, found in a varying number of copies, in blood clotting and fibrinolytic proteins, some serine proteases and plasma proteins. Plasminogen-like kringles possess affinity for free lysine and lysine-containing peptides.


Pssm-ID: 238056  Cd Length: 83  Bit Score: 128.26  E-value: 1.99e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011659 113 EGNCAEDLGTNYRGHVNITRSGIECQLWRSRYPHKPEINSTTHPGADLQENFCRNPDSSTTGPWCYTTDPTVRREECSIP 192
Cdd:cd00108    1 TRDCYWGNGESYRGTVSTTKSGKPCQRWNSQLPHQHKFNPERFPEGLLEENYCRNPDGDPEGPWCYTTDPNVRWEYCDIP 80

                 ..
gi 189011659 193 VC 194
Cdd:cd00108   81 RC 82
KR smart00130
Kringle domain; Named after a Danish pastry. Found in several serine proteases and in ROR-like ...
114-196 4.08e-35

Kringle domain; Named after a Danish pastry. Found in several serine proteases and in ROR-like receptors. Can occur in up to 38 copies (in apolipoprotein(a)). Plasminogen-like kringles possess affinity for free lysine and lysine- containing peptides.


Pssm-ID: 214527  Cd Length: 83  Bit Score: 127.12  E-value: 4.08e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011659   114 GNCAEDLGTNYRGHVNITRSGIECQLWRSRYPHKPEINSTTHPGADLQENFCRNPDSSTTGPWCYTTDPTVRREECSIPV 193
Cdd:smart00130   1 RECYAGNGESYRGTVSVTKSGKPCQRWDSQTPHLHRFTPESFPDLGLEENYCRNPDGDSEGPWCYTTDPNVRWEYCDIPQ 80

                   ...
gi 189011659   194 CGQ 196
Cdd:smart00130  81 CEE 83
Kringle pfam00051
Kringle domain; Kringle domains have been found in plasminogen, hepatocyte growth factors, ...
111-194 3.33e-30

Kringle domain; Kringle domains have been found in plasminogen, hepatocyte growth factors, prothrombin, and apolipoprotein A. Structure is disulfide-rich, nearly all-beta.


Pssm-ID: 395005  Cd Length: 79  Bit Score: 113.56  E-value: 3.33e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011659  111 CLEGNcaedlGTNYRGHVNITRSGIECQLWRSRYPHK-PEINSTTHPGADLQENFCRNPDSStTGPWCYTTDPTVRREEC 189
Cdd:pfam00051   1 CYHGN-----GESYRGTVSTTESGRPCQAWDSQTPHRhSKYTPENFPAKGLGENYCRNPDGD-ERPWCYTTDPRVRWEYC 74

                  ....*
gi 189011659  190 SIPVC 194
Cdd:pfam00051  75 DIPRC 79
Thrombin_light pfam09396
Thrombin light chain; Thrombin is an enzyme that cleaves bonds after Arg and Lys, converts ...
321-368 2.55e-28

Thrombin light chain; Thrombin is an enzyme that cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII. Prothrombin is activated on the surface of a phospholipid membrane where factor Xa removes the activation peptide and cleaves the remaining part into light and heavy chains. This domain corresponds to the light chain of thrombin.


Pssm-ID: 430582  Cd Length: 48  Bit Score: 106.99  E-value: 2.55e-28
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 189011659  321 ATSEYQTFFDPRTFGLGEADCGLRPLFEKKSLEDKTEGELLESYIDGR 368
Cdd:pfam09396   1 TTEEFKTFFNPRTFGAGEADCGLRPLFEKKSKKDKTEKELLESYIGGR 48
KR smart00130
Kringle domain; Named after a Danish pastry. Found in several serine proteases and in ROR-like ...
216-298 2.90e-28

Kringle domain; Named after a Danish pastry. Found in several serine proteases and in ROR-like receptors. Can occur in up to 38 copies (in apolipoprotein(a)). Plasminogen-like kringles possess affinity for free lysine and lysine- containing peptides.


Pssm-ID: 214527  Cd Length: 83  Bit Score: 108.25  E-value: 2.90e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011659   216 EECVPDRGRQYQGHLAVTTHGLPCLAWASAQAKALSKHQDFDSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFEYCDLNY 295
Cdd:smart00130   1 RECYAGNGESYRGTVSVTKSGKPCQRWDSQTPHLHRFTPESFPDLGLEENYCRNPDGDSEGPWCYTTDPNVRWEYCDIPQ 80

                   ...
gi 189011659   296 CEE 298
Cdd:smart00130  81 CEE 83
Kringle pfam00051
Kringle domain; Kringle domains have been found in plasminogen, hepatocyte growth factors, ...
218-296 3.62e-26

Kringle domain; Kringle domains have been found in plasminogen, hepatocyte growth factors, prothrombin, and apolipoprotein A. Structure is disulfide-rich, nearly all-beta.


Pssm-ID: 395005  Cd Length: 79  Bit Score: 102.00  E-value: 3.62e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011659  218 CVPDRGRQYQGHLAVTTHGLPCLAWASAQAKALSK-HQDFDSAVQLVENFCRNPDGDEEGvWCYVAGKPGDFEYCDLNYC 296
Cdd:pfam00051   1 CYHGNGESYRGTVSTTESGRPCQAWDSQTPHRHSKyTPENFPAKGLGENYCRNPDGDERP-WCYTTDPRVRWEYCDIPRC 79
KR cd00108
Kringle domain; Kringle domains are believed to play a role in binding mediators, such as ...
215-297 1.81e-25

Kringle domain; Kringle domains are believed to play a role in binding mediators, such as peptides, other proteins, membranes, or phospholipids. They are autonomous structural domains, found in a varying number of copies, in blood clotting and fibrinolytic proteins, some serine proteases and plasma proteins. Plasminogen-like kringles possess affinity for free lysine and lysine-containing peptides.


Pssm-ID: 238056  Cd Length: 83  Bit Score: 100.15  E-value: 1.81e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011659 215 SEECVPDRGRQYQGHLAVTTHGLPCLAWASAqakaLSKHQDFDSAV----QLVENFCRNPDGDEEGVWCYVAGKPGDFEY 290
Cdd:cd00108    1 TRDCYWGNGESYRGTVSTTKSGKPCQRWNSQ----LPHQHKFNPERfpegLLEENYCRNPDGDPEGPWCYTTDPNVRWEY 76

                 ....*..
gi 189011659 291 CDLNYCE 297
Cdd:cd00108   77 CDIPRCE 83
GLA smart00069
Domain containing Gla (gamma-carboxyglutamate) residues; A hyaluronan-binding domain found in ...
32-96 1.24e-23

Domain containing Gla (gamma-carboxyglutamate) residues; A hyaluronan-binding domain found in proteins associated with the extracellular matrix, cell adhesion and cell migration.


Pssm-ID: 214503  Cd Length: 65  Bit Score: 94.30  E-value: 1.24e-23
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 189011659    32 QQVFLAPQQALSLLQRVRRASSGFLEEVFKGNLERECVEETCSYEEAFEALESSTATDAFWAKYT 96
Cdd:smart00069   1 GSVFLSRQEANKVLRRQRRANAFLLEELRPGNLERECQEEICSLEEAREVFEDNEGTDEFYRRYY 65
Gla pfam00594
Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domain; This domain is ...
56-96 5.57e-20

Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domain; This domain is responsible for the high-affinity binding of calcium ions. This domain contains post-translational modifications of many glutamate residues by Vitamin K-dependent carboxylation to form gamma-carboxyglutamate (Gla).


Pssm-ID: 459861  Cd Length: 41  Bit Score: 83.35  E-value: 5.57e-20
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 189011659   56 LEEVFKGNLERECVEETCSYEEAFEALESSTATDAFWAKYT 96
Cdd:pfam00594   1 LEELKPGNLERECYEEICSYEEAREIFEDDEKTMEFWKKYT 41
 
Name Accession Description Interval E-value
Tryp_SPc cd00190
Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens ...
369-621 2.45e-89

Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.


Pssm-ID: 238113 [Multi-domain]  Cd Length: 232  Bit Score: 276.85  E-value: 2.45e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011659 369 IVEGWDAEIGMSPWQVMLFRKSPQeLLCGASLISDRWVLTAAHCLLyppwdkNFTENDLLVRIGKHSRTRYERNIEKISm 448
Cdd:cd00190    1 IVGGSEAKIGSFPWQVSLQYTGGR-HFCGGSLISPRWVLTAAHCVY------SSAPSNYTVRLGSHDLSSNEGGGQVIK- 72
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011659 449 LEKIYIHPRYNWReNLDRDIALMKLKKPITFSDYIHPVCLPDREtaaSLFQAGYKGRVTGWGnlketwTTNVGKVQPSVL 528
Cdd:cd00190   73 VKKVIVHPNYNPS-TYDNDIALLKLKRPVTLSDNVRPICLPSSG---YNLPAGTTCTVSGWG------RTSEGGPLPDVL 142
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011659 529 QVVNLPIVERSVCKDSTR--IRITDNMFCAGYKPGeGKrgDACEGDSGGPFVMKNplNKRWYQMGIVSWGEGCDRDGKYG 606
Cdd:cd00190  143 QEVNVPIVSNAECKRAYSygGTITDNMLCAGGLEG-GK--DACQGDSGGPLVCND--NGRGVLVGIVSWGSGCARPNYPG 217
                        250
                 ....*....|....*
gi 189011659 607 FYTHVFRLKKWIQKV 621
Cdd:cd00190  218 VYTRVSSYLDWIQKT 232
Tryp_SPc smart00020
Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens ...
368-618 4.99e-88

Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues.


Pssm-ID: 214473  Cd Length: 229  Bit Score: 273.40  E-value: 4.99e-88
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011659   368 RIVEGWDAEIGMSPWQVMLFRKSPQeLLCGASLISDRWVLTAAHCLLyppwdkNFTENDLLVRIGKHSRTRYERNIekIS 447
Cdd:smart00020   1 RIVGGSEANIGSFPWQVSLQYGGGR-HFCGGSLISPRWVLTAAHCVR------GSDPSNIRVRLGSHDLSSGEEGQ--VI 71
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011659   448 MLEKIYIHPRYNwRENLDRDIALMKLKKPITFSDYIHPVCLPDretAASLFQAGYKGRVTGWGNlketwTTNVGKVQPSV 527
Cdd:smart00020  72 KVSKVIIHPNYN-PSTYDNDIALLKLKEPVTLSDNVRPICLPS---SNYNVPAGTTCTVSGWGR-----TSEGAGSLPDT 142
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011659   528 LQVVNLPIVERSVCKD--STRIRITDNMFCAGYkPGEGKrgDACEGDSGGPFVMKNPlnkRWYQMGIVSWGEGCDRDGKY 605
Cdd:smart00020 143 LQEVNVPIVSNATCRRaySGGGAITDNMLCAGG-LEGGK--DACQGDSGGPLVCNDG---RWVLVGIVSWGSGCARPGKP 216
                          250
                   ....*....|...
gi 189011659   606 GFYTHVFRLKKWI 618
Cdd:smart00020 217 GVYTRVSSYLDWI 229
Trypsin pfam00089
Trypsin;
369-618 1.83e-73

Trypsin;


Pssm-ID: 459667 [Multi-domain]  Cd Length: 219  Bit Score: 235.03  E-value: 1.83e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011659  369 IVEGWDAEIGMSPWQVMLFRKSPQeLLCGASLISDRWVLTAAHCLLYPPwdknftenDLLVRIGKHSRTRYERNIEKISM 448
Cdd:pfam00089   1 IVGGDEAQPGSFPWQVSLQLSSGK-HFCGGSLISENWVLTAAHCVSGAS--------DVKVVLGAHNIVLREGGEQKFDV 71
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011659  449 lEKIYIHPRYNWReNLDRDIALMKLKKPITFSDYIHPVCLPDretAASLFQAGYKGRVTGWGNLKETWTtnvgkvqPSVL 528
Cdd:pfam00089  72 -EKIIVHPNYNPD-TLDNDIALLKLESPVTLGDTVRPICLPD---ASSDLPVGTTCTVSGWGNTKTLGP-------SDTL 139
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011659  529 QVVNLPIVERSVCKDSTRIRITDNMFCAGYKpgegkRGDACEGDSGGPFVMKNPlnkrwYQMGIVSWGEGCDRDGKYGFY 608
Cdd:pfam00089 140 QEVTVPVVSRETCRSAYGGTVTDTMICAGAG-----GKDACQGDSGGPLVCSDG-----ELIGIVSWGYGCASGNYPGVY 209
                         250
                  ....*....|
gi 189011659  609 THVFRLKKWI 618
Cdd:pfam00089 210 TPVSSYLDWI 219
COG5640 COG5640
Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, ...
368-626 1.28e-59

Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444365 [Multi-domain]  Cd Length: 262  Bit Score: 200.26  E-value: 1.28e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011659 368 RIVEGWDAEIGMSPWQVMLFRKS-PQELLCGASLISDRWVLTAAHCLlyppwdKNFTENDLLVRIGKHSRTRYERNIEKI 446
Cdd:COG5640   30 AIVGGTPATVGEYPWMVALQSSNgPSGQFCGGTLIAPRWVLTAAHCV------DGDGPSDLRVVIGSTDLSTSGGTVVKV 103
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011659 447 SmleKIYIHPRYNWReNLDRDIALMKLKKPITFSDYIHpvcLPDRETAASlfqAGYKGRVTGWGNLKETWTTnvgkvQPS 526
Cdd:COG5640  104 A---RIVVHPDYDPA-TPGNDIALLKLATPVPGVAPAP---LATSADAAA---PGTPATVAGWGRTSEGPGS-----QSG 168
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011659 527 VLQVVNLPIVERSVCKDSTRIrITDNMFCAGYKPGegkRGDACEGDSGGPFVMKNplNKRWYQMGIVSWGEGCDRDGKYG 606
Cdd:COG5640  169 TLRKADVPVVSDATCAAYGGF-DGGTMLCAGYPEG---GKDACQGDSGGPLVVKD--GGGWVLVGVVSWGGGPCAAGYPG 242
                        250       260
                 ....*....|....*....|
gi 189011659 607 FYTHVFRLKKWIQKVIDQFG 626
Cdd:COG5640  243 VYTRVSAYRDWIKSTAGGLG 262
KR cd00108
Kringle domain; Kringle domains are believed to play a role in binding mediators, such as ...
113-194 1.99e-35

Kringle domain; Kringle domains are believed to play a role in binding mediators, such as peptides, other proteins, membranes, or phospholipids. They are autonomous structural domains, found in a varying number of copies, in blood clotting and fibrinolytic proteins, some serine proteases and plasma proteins. Plasminogen-like kringles possess affinity for free lysine and lysine-containing peptides.


Pssm-ID: 238056  Cd Length: 83  Bit Score: 128.26  E-value: 1.99e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011659 113 EGNCAEDLGTNYRGHVNITRSGIECQLWRSRYPHKPEINSTTHPGADLQENFCRNPDSSTTGPWCYTTDPTVRREECSIP 192
Cdd:cd00108    1 TRDCYWGNGESYRGTVSTTKSGKPCQRWNSQLPHQHKFNPERFPEGLLEENYCRNPDGDPEGPWCYTTDPNVRWEYCDIP 80

                 ..
gi 189011659 193 VC 194
Cdd:cd00108   81 RC 82
KR smart00130
Kringle domain; Named after a Danish pastry. Found in several serine proteases and in ROR-like ...
114-196 4.08e-35

Kringle domain; Named after a Danish pastry. Found in several serine proteases and in ROR-like receptors. Can occur in up to 38 copies (in apolipoprotein(a)). Plasminogen-like kringles possess affinity for free lysine and lysine- containing peptides.


Pssm-ID: 214527  Cd Length: 83  Bit Score: 127.12  E-value: 4.08e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011659   114 GNCAEDLGTNYRGHVNITRSGIECQLWRSRYPHKPEINSTTHPGADLQENFCRNPDSSTTGPWCYTTDPTVRREECSIPV 193
Cdd:smart00130   1 RECYAGNGESYRGTVSVTKSGKPCQRWDSQTPHLHRFTPESFPDLGLEENYCRNPDGDSEGPWCYTTDPNVRWEYCDIPQ 80

                   ...
gi 189011659   194 CGQ 196
Cdd:smart00130  81 CEE 83
Kringle pfam00051
Kringle domain; Kringle domains have been found in plasminogen, hepatocyte growth factors, ...
111-194 3.33e-30

Kringle domain; Kringle domains have been found in plasminogen, hepatocyte growth factors, prothrombin, and apolipoprotein A. Structure is disulfide-rich, nearly all-beta.


Pssm-ID: 395005  Cd Length: 79  Bit Score: 113.56  E-value: 3.33e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011659  111 CLEGNcaedlGTNYRGHVNITRSGIECQLWRSRYPHK-PEINSTTHPGADLQENFCRNPDSStTGPWCYTTDPTVRREEC 189
Cdd:pfam00051   1 CYHGN-----GESYRGTVSTTESGRPCQAWDSQTPHRhSKYTPENFPAKGLGENYCRNPDGD-ERPWCYTTDPRVRWEYC 74

                  ....*
gi 189011659  190 SIPVC 194
Cdd:pfam00051  75 DIPRC 79
Thrombin_light pfam09396
Thrombin light chain; Thrombin is an enzyme that cleaves bonds after Arg and Lys, converts ...
321-368 2.55e-28

Thrombin light chain; Thrombin is an enzyme that cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII. Prothrombin is activated on the surface of a phospholipid membrane where factor Xa removes the activation peptide and cleaves the remaining part into light and heavy chains. This domain corresponds to the light chain of thrombin.


Pssm-ID: 430582  Cd Length: 48  Bit Score: 106.99  E-value: 2.55e-28
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 189011659  321 ATSEYQTFFDPRTFGLGEADCGLRPLFEKKSLEDKTEGELLESYIDGR 368
Cdd:pfam09396   1 TTEEFKTFFNPRTFGAGEADCGLRPLFEKKSKKDKTEKELLESYIGGR 48
KR smart00130
Kringle domain; Named after a Danish pastry. Found in several serine proteases and in ROR-like ...
216-298 2.90e-28

Kringle domain; Named after a Danish pastry. Found in several serine proteases and in ROR-like receptors. Can occur in up to 38 copies (in apolipoprotein(a)). Plasminogen-like kringles possess affinity for free lysine and lysine- containing peptides.


Pssm-ID: 214527  Cd Length: 83  Bit Score: 108.25  E-value: 2.90e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011659   216 EECVPDRGRQYQGHLAVTTHGLPCLAWASAQAKALSKHQDFDSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFEYCDLNY 295
Cdd:smart00130   1 RECYAGNGESYRGTVSVTKSGKPCQRWDSQTPHLHRFTPESFPDLGLEENYCRNPDGDSEGPWCYTTDPNVRWEYCDIPQ 80

                   ...
gi 189011659   296 CEE 298
Cdd:smart00130  81 CEE 83
Kringle pfam00051
Kringle domain; Kringle domains have been found in plasminogen, hepatocyte growth factors, ...
218-296 3.62e-26

Kringle domain; Kringle domains have been found in plasminogen, hepatocyte growth factors, prothrombin, and apolipoprotein A. Structure is disulfide-rich, nearly all-beta.


Pssm-ID: 395005  Cd Length: 79  Bit Score: 102.00  E-value: 3.62e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011659  218 CVPDRGRQYQGHLAVTTHGLPCLAWASAQAKALSK-HQDFDSAVQLVENFCRNPDGDEEGvWCYVAGKPGDFEYCDLNYC 296
Cdd:pfam00051   1 CYHGNGESYRGTVSTTESGRPCQAWDSQTPHRHSKyTPENFPAKGLGENYCRNPDGDERP-WCYTTDPRVRWEYCDIPRC 79
KR cd00108
Kringle domain; Kringle domains are believed to play a role in binding mediators, such as ...
215-297 1.81e-25

Kringle domain; Kringle domains are believed to play a role in binding mediators, such as peptides, other proteins, membranes, or phospholipids. They are autonomous structural domains, found in a varying number of copies, in blood clotting and fibrinolytic proteins, some serine proteases and plasma proteins. Plasminogen-like kringles possess affinity for free lysine and lysine-containing peptides.


Pssm-ID: 238056  Cd Length: 83  Bit Score: 100.15  E-value: 1.81e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011659 215 SEECVPDRGRQYQGHLAVTTHGLPCLAWASAqakaLSKHQDFDSAV----QLVENFCRNPDGDEEGVWCYVAGKPGDFEY 290
Cdd:cd00108    1 TRDCYWGNGESYRGTVSTTKSGKPCQRWNSQ----LPHQHKFNPERfpegLLEENYCRNPDGDPEGPWCYTTDPNVRWEY 76

                 ....*..
gi 189011659 291 CDLNYCE 297
Cdd:cd00108   77 CDIPRCE 83
GLA smart00069
Domain containing Gla (gamma-carboxyglutamate) residues; A hyaluronan-binding domain found in ...
32-96 1.24e-23

Domain containing Gla (gamma-carboxyglutamate) residues; A hyaluronan-binding domain found in proteins associated with the extracellular matrix, cell adhesion and cell migration.


Pssm-ID: 214503  Cd Length: 65  Bit Score: 94.30  E-value: 1.24e-23
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 189011659    32 QQVFLAPQQALSLLQRVRRASSGFLEEVFKGNLERECVEETCSYEEAFEALESSTATDAFWAKYT 96
Cdd:smart00069   1 GSVFLSRQEANKVLRRQRRANAFLLEELRPGNLERECQEEICSLEEAREVFEDNEGTDEFYRRYY 65
Gla pfam00594
Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domain; This domain is ...
56-96 5.57e-20

Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domain; This domain is responsible for the high-affinity binding of calcium ions. This domain contains post-translational modifications of many glutamate residues by Vitamin K-dependent carboxylation to form gamma-carboxyglutamate (Gla).


Pssm-ID: 459861  Cd Length: 41  Bit Score: 83.35  E-value: 5.57e-20
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 189011659   56 LEEVFKGNLERECVEETCSYEEAFEALESSTATDAFWAKYT 96
Cdd:pfam00594   1 LEELKPGNLERECYEEICSYEEAREIFEDDEKTMEFWKKYT 41
eMpr COG3591
V8-like Glu-specific endopeptidase [Posttranslational modification, protein turnover, ...
395-619 2.46e-09

V8-like Glu-specific endopeptidase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 442810 [Multi-domain]  Cd Length: 194  Bit Score: 57.38  E-value: 2.46e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011659 395 LCGASLISDRWVLTAAHCLLYPPWDKNFTenDLLVRIGkhsrtrYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLK 474
Cdd:COG3591   13 VCTGTLIGPNLVLTAGHCVYDGAGGGWAT--NIVFVPG------YNGGPYGTATATRFRVPPGWVASGDAGYDYALLRLD 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011659 475 KPITFS-DYIHPVCLPDRETAASLFQAGYkgrvtGWGNLKETWTTNVGKVQPSvlqvvnlpiversvckDSTRIRItdnm 553
Cdd:COG3591   85 EPLGDTtGWLGLAFNDAPLAGEPVTIIGY-----PGDRPKDLSLDCSGRVTGV----------------QGNRLSY---- 139
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 189011659 554 fcagykpgegkRGDACEGDSGGPFVMKNplNKRWYQMGIVSWG-EGCDRDGKYGFYTHVFRLKKWIQ 619
Cdd:COG3591  140 -----------DCDTTGGSSGSPVLDDS--DGGGRVVGVHSAGgADRANTGVRLTSAIVAALRAWAS 193
DUF1986 pfam09342
Domain of unknown function (DUF1986); This domain is found in serine proteases and is ...
394-490 7.59e-03

Domain of unknown function (DUF1986); This domain is found in serine proteases and is predicted to contain disulphide bonds.


Pssm-ID: 286432  Cd Length: 116  Bit Score: 36.76  E-value: 7.59e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011659  394 LLCGASLISDRWVLTAAHCLlyppWDKNFTENDLLVRIGKHSRTRYERniekiSMLEKIYihpRYNWRENLDR-DIALMK 472
Cdd:pfam09342  13 MICSGVLIDASWVIVSGSCL----RDTNLRHQYISVVLGGAKTLKSIE-----GPYEQIV---RVDCRHDIPEsEISLLH 80
                          90
                  ....*....|....*...
gi 189011659  473 LKKPITFSDYIHPVCLPD 490
Cdd:pfam09342  81 LASPASFSNHVLPTFVPE 98
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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