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Conserved domains on  [gi|154152025|ref|NP_001093843|]
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protein shisa-like-2B [Bos taurus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Shisa super family cl16468
Wnt and FGF inhibitory regulator; Shisa is a transcription factor-type molecule that ...
 7-89 2.26e-04

Wnt and FGF inhibitory regulator; Shisa is a transcription factor-type molecule that physically interacts with immature forms of the Wnt receptor Frizzled and the FGF receptor within the endoplasmic reticulum to inhibit their post-translational maturation and trafficking to the cell surface.


The actual alignment was detected with superfamily member pfam13908:

Pssm-ID: 464036  Cd Length: 187  Bit Score: 39.81  E-value: 2.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154152025    7 VCSGYYSLNHSFVEPFQCPRRgegaTLLYCCGFADLKYCCS------------------EPGSYFPYK------HSYMWS 62
Cdd:pfam13908   3 YCHGWFDSMGQWHEGFQCPER----DATFCCGSCSLRYCCSdvlarldqgtctndrrwmETGKEPPEApdstaePIYVPF 78

                          90       100
                  ....*....|....*....|....*..
gi 154152025   63 LSIGALIGLGIAALVLLAFVISVCVLC 89
Cdd:pfam13908  79 LALGLIVAIGGSVFVAFVIVGIFCATC 105
 
Name Accession Description Interval E-value
Shisa pfam13908
Wnt and FGF inhibitory regulator; Shisa is a transcription factor-type molecule that ...
 7-89 2.26e-04

Wnt and FGF inhibitory regulator; Shisa is a transcription factor-type molecule that physically interacts with immature forms of the Wnt receptor Frizzled and the FGF receptor within the endoplasmic reticulum to inhibit their post-translational maturation and trafficking to the cell surface.


Pssm-ID: 464036  Cd Length: 187  Bit Score: 39.81  E-value: 2.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154152025    7 VCSGYYSLNHSFVEPFQCPRRgegaTLLYCCGFADLKYCCS------------------EPGSYFPYK------HSYMWS 62
Cdd:pfam13908   3 YCHGWFDSMGQWHEGFQCPER----DATFCCGSCSLRYCCSdvlarldqgtctndrrwmETGKEPPEApdstaePIYVPF 78

                          90       100
                  ....*....|....*....|....*..
gi 154152025   63 LSIGALIGLGIAALVLLAFVISVCVLC 89
Cdd:pfam13908  79 LALGLIVAIGGSVFVAFVIVGIFCATC 105
 
Name Accession Description Interval E-value
Shisa pfam13908
Wnt and FGF inhibitory regulator; Shisa is a transcription factor-type molecule that ...
 7-89 2.26e-04

Wnt and FGF inhibitory regulator; Shisa is a transcription factor-type molecule that physically interacts with immature forms of the Wnt receptor Frizzled and the FGF receptor within the endoplasmic reticulum to inhibit their post-translational maturation and trafficking to the cell surface.


Pssm-ID: 464036  Cd Length: 187  Bit Score: 39.81  E-value: 2.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154152025    7 VCSGYYSLNHSFVEPFQCPRRgegaTLLYCCGFADLKYCCS------------------EPGSYFPYK------HSYMWS 62
Cdd:pfam13908   3 YCHGWFDSMGQWHEGFQCPER----DATFCCGSCSLRYCCSdvlarldqgtctndrrwmETGKEPPEApdstaePIYVPF 78

                          90       100
                  ....*....|....*....|....*..
gi 154152025   63 LSIGALIGLGIAALVLLAFVISVCVLC 89
Cdd:pfam13908  79 LALGLIVAIGGSVFVAFVIVGIFCATC 105
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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