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Conserved domains on  [gi|151101311|ref|NP_001092741|]
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centrosomal protein POC5 isoform 1 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DUF5585 super family cl39316
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
412-567 3.27e-04

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


The actual alignment was detected with superfamily member pfam17823:

Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 43.41  E-value: 3.27e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151101311  412 VTSPLLPSPPAAVGGASATAVPSAASMTSTRAASASSVHVPVSALGAGSAATAASEEmyVPRVVTSAQQKAGRTITA-RI 490
Cdd:pfam17823 110 AASRALAAAASSSPSSAAQSLPAAIAALPSEAFSAPRAAACRANASAAPRAAIAAAS--APHAASPAPRTAASSTTAaSS 187
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151101311  491 TGRCDFASKNRISSSLAIMGVSPPMSSVVVEKHHP----VTVQtIPQATAAkyPRTIHPESSTSASRSLGTRSAHTQSLT 566
Cdd:pfam17823 188 TTAASSAPTTAASSAPATLTPARGISTAATATGHPaagtALAA-VGNSSPA--AGTVTAAVGTVTPAALATLAAAAGTVA 264

                  .
gi 151101311  567 S 567
Cdd:pfam17823 265 S 265
 
Name Accession Description Interval E-value
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
412-567 3.27e-04

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 43.41  E-value: 3.27e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151101311  412 VTSPLLPSPPAAVGGASATAVPSAASMTSTRAASASSVHVPVSALGAGSAATAASEEmyVPRVVTSAQQKAGRTITA-RI 490
Cdd:pfam17823 110 AASRALAAAASSSPSSAAQSLPAAIAALPSEAFSAPRAAACRANASAAPRAAIAAAS--APHAASPAPRTAASSTTAaSS 187
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151101311  491 TGRCDFASKNRISSSLAIMGVSPPMSSVVVEKHHP----VTVQtIPQATAAkyPRTIHPESSTSASRSLGTRSAHTQSLT 566
Cdd:pfam17823 188 TTAASSAPTTAASSAPATLTPARGISTAATATGHPaagtALAA-VGNSSPA--AGTVTAAVGTVTPAALATLAAAAGTVA 264

                  .
gi 151101311  567 S 567
Cdd:pfam17823 265 S 265
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
403-537 6.92e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 39.31  E-value: 6.92e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151101311 403 PSAPPMPLPVTSPLlpsPPAAVGGASATAVPSAASMTSTRAASASSVHVPVSALGAGSAATAASEEMYVPRVVTSAQ-QK 481
Cdd:PRK14951 381 PARPEAAAPAAAPV---AQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQaAP 457
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 151101311 482 AGRTITARITGRCDFASKNRISSSlaimgvSPPMSSVVVEKHHPVTVQTIPQATAA 537
Cdd:PRK14951 458 ETVAIPVRVAPEPAVASAAPAPAA------APAAARLTPTEEGDVWHATVQQLAAA 507
 
Name Accession Description Interval E-value
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
412-567 3.27e-04

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 43.41  E-value: 3.27e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151101311  412 VTSPLLPSPPAAVGGASATAVPSAASMTSTRAASASSVHVPVSALGAGSAATAASEEmyVPRVVTSAQQKAGRTITA-RI 490
Cdd:pfam17823 110 AASRALAAAASSSPSSAAQSLPAAIAALPSEAFSAPRAAACRANASAAPRAAIAAAS--APHAASPAPRTAASSTTAaSS 187
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151101311  491 TGRCDFASKNRISSSLAIMGVSPPMSSVVVEKHHP----VTVQtIPQATAAkyPRTIHPESSTSASRSLGTRSAHTQSLT 566
Cdd:pfam17823 188 TTAASSAPTTAASSAPATLTPARGISTAATATGHPaagtALAA-VGNSSPA--AGTVTAAVGTVTPAALATLAAAAGTVA 264

                  .
gi 151101311  567 S 567
Cdd:pfam17823 265 S 265
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
403-537 6.92e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 39.31  E-value: 6.92e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151101311 403 PSAPPMPLPVTSPLlpsPPAAVGGASATAVPSAASMTSTRAASASSVHVPVSALGAGSAATAASEEMYVPRVVTSAQ-QK 481
Cdd:PRK14951 381 PARPEAAAPAAAPV---AQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQaAP 457
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 151101311 482 AGRTITARITGRCDFASKNRISSSlaimgvSPPMSSVVVEKHHPVTVQTIPQATAA 537
Cdd:PRK14951 458 ETVAIPVRVAPEPAVASAAPAPAA------APAAARLTPTEEGDVWHATVQQLAAA 507
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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