NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|145334689|ref|NP_001078690|]
View 

basic pentacysteine 6 [Arabidopsis thaliana]

Protein Classification

GAGA_bind domain-containing protein( domain architecture ID 10533251)

GAGA_bind domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
GAGA_bind pfam06217
GAGA binding protein-like family; This family includes gbp a protein from Soybean that binds ...
1-338 2.50e-156

GAGA binding protein-like family; This family includes gbp a protein from Soybean that binds to GAGA element dinucleotide repeat DNA. It seems likely that the this domain mediates DNA binding. This putative domain contains several conserved cysteines and a histidine suggesting this may be a zinc-binding DNA interaction domain.


:

Pssm-ID: 461854  Cd Length: 290  Bit Score: 439.50  E-value: 2.50e-156
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145334689    1 MDDGGHRENGRHKAAVQG----QHQPSM---KQVMSIIAERDAAIQERN--LAISEKKAAVAERDMAFLQRDTAIAERNN 71
Cdd:pfam06217   1 MDDDGHRENGRHRADQGNwgmyQHQPKGnlgLQLMSSMAERDTALQERNlfLALSEKKAALAERDMAFLQRDAAIAERDN 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145334689   72 AIMERDSALTALQYREnsmvtapaanmsacPPGCQisrgvkhlhhphmhhhhqqhhiPQLTENAYETREMEPNDGLPTSP 151
Cdd:pfam06217  81 AILERDNALAALQMMR--------------PPHHQ----------------------LQLPEPPYPKREMHISDAFEESP 124
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145334689  152 PAgSTLESAKPKRGKRV--NPKAttqtaanKRGPKNQRKVKKESEDdLNKIMFVKTTHdytdedsskhilIGSKSDWKSQ 229
Cdd:pfam06217 125 VP-STEEPAKKRQGGKRpkEPKP-------KKPKKSPRKPKKEGED-LNKVAPGDGPA------------PRSKSPWKSQ 183
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145334689  230 EMvGLNQVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMYPLPALPNKRHARVGGRKMSGSAFNKLLSRLA 309
Cdd:pfam06217 184 DL-GINGIDFDESTMPIPVCSCTGVPQQCYKWGNGGWQSACCTTTLSMYPLPMSPNKRHARIGGRKMSGGAFKKLLERLA 262
                         330       340
                  ....*....|....*....|....*....
gi 145334689  310 AEGhHDLSNPVDLKDHWAKHGTNRYITIK 338
Cdd:pfam06217 263 AEG-YDLSNPIDLKTHWAKHGTNRYITIK 290
 
Name Accession Description Interval E-value
GAGA_bind pfam06217
GAGA binding protein-like family; This family includes gbp a protein from Soybean that binds ...
1-338 2.50e-156

GAGA binding protein-like family; This family includes gbp a protein from Soybean that binds to GAGA element dinucleotide repeat DNA. It seems likely that the this domain mediates DNA binding. This putative domain contains several conserved cysteines and a histidine suggesting this may be a zinc-binding DNA interaction domain.


Pssm-ID: 461854  Cd Length: 290  Bit Score: 439.50  E-value: 2.50e-156
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145334689    1 MDDGGHRENGRHKAAVQG----QHQPSM---KQVMSIIAERDAAIQERN--LAISEKKAAVAERDMAFLQRDTAIAERNN 71
Cdd:pfam06217   1 MDDDGHRENGRHRADQGNwgmyQHQPKGnlgLQLMSSMAERDTALQERNlfLALSEKKAALAERDMAFLQRDAAIAERDN 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145334689   72 AIMERDSALTALQYREnsmvtapaanmsacPPGCQisrgvkhlhhphmhhhhqqhhiPQLTENAYETREMEPNDGLPTSP 151
Cdd:pfam06217  81 AILERDNALAALQMMR--------------PPHHQ----------------------LQLPEPPYPKREMHISDAFEESP 124
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145334689  152 PAgSTLESAKPKRGKRV--NPKAttqtaanKRGPKNQRKVKKESEDdLNKIMFVKTTHdytdedsskhilIGSKSDWKSQ 229
Cdd:pfam06217 125 VP-STEEPAKKRQGGKRpkEPKP-------KKPKKSPRKPKKEGED-LNKVAPGDGPA------------PRSKSPWKSQ 183
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145334689  230 EMvGLNQVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMYPLPALPNKRHARVGGRKMSGSAFNKLLSRLA 309
Cdd:pfam06217 184 DL-GINGIDFDESTMPIPVCSCTGVPQQCYKWGNGGWQSACCTTTLSMYPLPMSPNKRHARIGGRKMSGGAFKKLLERLA 262
                         330       340
                  ....*....|....*....|....*....
gi 145334689  310 AEGhHDLSNPVDLKDHWAKHGTNRYITIK 338
Cdd:pfam06217 263 AEG-YDLSNPIDLKTHWAKHGTNRYITIK 290
 
Name Accession Description Interval E-value
GAGA_bind pfam06217
GAGA binding protein-like family; This family includes gbp a protein from Soybean that binds ...
1-338 2.50e-156

GAGA binding protein-like family; This family includes gbp a protein from Soybean that binds to GAGA element dinucleotide repeat DNA. It seems likely that the this domain mediates DNA binding. This putative domain contains several conserved cysteines and a histidine suggesting this may be a zinc-binding DNA interaction domain.


Pssm-ID: 461854  Cd Length: 290  Bit Score: 439.50  E-value: 2.50e-156
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145334689    1 MDDGGHRENGRHKAAVQG----QHQPSM---KQVMSIIAERDAAIQERN--LAISEKKAAVAERDMAFLQRDTAIAERNN 71
Cdd:pfam06217   1 MDDDGHRENGRHRADQGNwgmyQHQPKGnlgLQLMSSMAERDTALQERNlfLALSEKKAALAERDMAFLQRDAAIAERDN 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145334689   72 AIMERDSALTALQYREnsmvtapaanmsacPPGCQisrgvkhlhhphmhhhhqqhhiPQLTENAYETREMEPNDGLPTSP 151
Cdd:pfam06217  81 AILERDNALAALQMMR--------------PPHHQ----------------------LQLPEPPYPKREMHISDAFEESP 124
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145334689  152 PAgSTLESAKPKRGKRV--NPKAttqtaanKRGPKNQRKVKKESEDdLNKIMFVKTTHdytdedsskhilIGSKSDWKSQ 229
Cdd:pfam06217 125 VP-STEEPAKKRQGGKRpkEPKP-------KKPKKSPRKPKKEGED-LNKVAPGDGPA------------PRSKSPWKSQ 183
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145334689  230 EMvGLNQVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMYPLPALPNKRHARVGGRKMSGSAFNKLLSRLA 309
Cdd:pfam06217 184 DL-GINGIDFDESTMPIPVCSCTGVPQQCYKWGNGGWQSACCTTTLSMYPLPMSPNKRHARIGGRKMSGGAFKKLLERLA 262
                         330       340
                  ....*....|....*....|....*....
gi 145334689  310 AEGhHDLSNPVDLKDHWAKHGTNRYITIK 338
Cdd:pfam06217 263 AEG-YDLSNPIDLKTHWAKHGTNRYITIK 290
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH