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Conserved domains on  [gi|145334259|ref|NP_001078510|]
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cytochrome c oxidase-like protein [Arabidopsis thaliana]

Protein Classification

cytochrome c oxidase subunit VIa family protein( domain architecture ID 10010836)

cytochrome c oxidase subunit VIa (COXVIa) family protein such as yeast cytochrome c oxidase polypeptide VIa (also known as Cox13p and Cox6ap) which is a component of the cytochrome c oxidase, the last enzyme in the mitochondrial electron transport chain which drives oxidative phosphorylation

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN02595 PLN02595
cytochrome c oxidase subunit VI protein
 1-92 8.86e-55

cytochrome c oxidase subunit VI protein


:

Pssm-ID: 178205  Cd Length: 102  Bit Score: 165.00  E-value: 8.86e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145334259   1 MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAVYVLSKGHHHGEDPP------ 74
Cdd:PLN02595   1 MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAVYVLSKGHHHGEDPPaypymh 80

                         90       100
                 ....*....|....*....|..
gi 145334259  75 ----EFPWGPDGLFEVKHNKEH 92
Cdd:PLN02595  81 irnkEFPWGPDGLFEVKHNKEH 102
 
Name Accession Description Interval E-value
PLN02595 PLN02595
cytochrome c oxidase subunit VI protein
 1-92 8.86e-55

cytochrome c oxidase subunit VI protein


Pssm-ID: 178205  Cd Length: 102  Bit Score: 165.00  E-value: 8.86e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145334259   1 MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAVYVLSKGHHHGEDPP------ 74
Cdd:PLN02595   1 MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAVYVLSKGHHHGEDPPaypymh 80

                         90       100
                 ....*....|....*....|..
gi 145334259  75 ----EFPWGPDGLFEVKHNKEH 92
Cdd:PLN02595  81 irnkEFPWGPDGLFEVKHNKEH 102
 
Name Accession Description Interval E-value
PLN02595 PLN02595
cytochrome c oxidase subunit VI protein
 1-92 8.86e-55

cytochrome c oxidase subunit VI protein


Pssm-ID: 178205  Cd Length: 102  Bit Score: 165.00  E-value: 8.86e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145334259   1 MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAVYVLSKGHHHGEDPP------ 74
Cdd:PLN02595   1 MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAVYVLSKGHHHGEDPPaypymh 80

                         90       100
                 ....*....|....*....|..
gi 145334259  75 ----EFPWGPDGLFEVKHNKEH 92
Cdd:PLN02595  81 irnkEFPWGPDGLFEVKHNKEH 102
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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