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Conserved domains on  [gi|145332961|ref|NP_001078346|]
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senescence-associated gene 21 [Arabidopsis thaliana]

Protein Classification

LEA_3 domain-containing protein( domain architecture ID 10505372)

LEA_3 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LEA_3 pfam03242
Late embryogenesis abundant protein; Members of this family are similar to late embryogenesis ...
 2-74 2.16e-26

Late embryogenesis abundant protein; Members of this family are similar to late embryogenesis abundant proteins. Members of the family have been isolated in a number of different screens. However, the molecular function of these proteins remains obscure.


:

Pssm-ID: 460856  Cd Length: 93  Bit Score: 92.41  E-value: 2.16e-26
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 145332961   2 LSSGKRGYAATAAQGSVSSGGRSGAVASAVMKKKGVEESTQKISWVPDPKTGYYRPETGSNEIDAAELRAALL 74
Cdd:pfam03242 21 NAIFRRGYAAAAAAAARGRGAEASGVAGKVAKEGAEEGSSEKSSWVPDPVTGYYRPENHAAEIDPAELRAMLL 93
 
Name Accession Description Interval E-value
LEA_3 pfam03242
Late embryogenesis abundant protein; Members of this family are similar to late embryogenesis ...
 2-74 2.16e-26

Late embryogenesis abundant protein; Members of this family are similar to late embryogenesis abundant proteins. Members of the family have been isolated in a number of different screens. However, the molecular function of these proteins remains obscure.


Pssm-ID: 460856  Cd Length: 93  Bit Score: 92.41  E-value: 2.16e-26
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 145332961   2 LSSGKRGYAATAAQGSVSSGGRSGAVASAVMKKKGVEESTQKISWVPDPKTGYYRPETGSNEIDAAELRAALL 74
Cdd:pfam03242 21 NAIFRRGYAAAAAAAARGRGAEASGVAGKVAKEGAEEGSSEKSSWVPDPVTGYYRPENHAAEIDPAELRAMLL 93
 
Name Accession Description Interval E-value
LEA_3 pfam03242
Late embryogenesis abundant protein; Members of this family are similar to late embryogenesis ...
 2-74 2.16e-26

Late embryogenesis abundant protein; Members of this family are similar to late embryogenesis abundant proteins. Members of the family have been isolated in a number of different screens. However, the molecular function of these proteins remains obscure.


Pssm-ID: 460856  Cd Length: 93  Bit Score: 92.41  E-value: 2.16e-26
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 145332961   2 LSSGKRGYAATAAQGSVSSGGRSGAVASAVMKKKGVEESTQKISWVPDPKTGYYRPETGSNEIDAAELRAALL 74
Cdd:pfam03242 21 NAIFRRGYAAAAAAAARGRGAEASGVAGKVAKEGAEEGSSEKSSWVPDPVTGYYRPENHAAEIDPAELRAMLL 93
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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