Transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana]
Protein Classification
lysine-specific demethylase; cupin domain-containing protein( domain architecture ID 10382028)
lysine-specific demethylase is a jumonji C domain-containing (JMJD) family histone demethylase demethylates specific residues of histone, similar to human lysine-specific demethylases 3A and 3B that specifically demethylate 'Lys-9' of histone H3, thereby playing a central role in the histone code| cupin domain-containing protein, part of a functionally diverse superfamily with the active site generally located at the center of a conserved domain forming a beta-barrel fold
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| zf-4CXXC_R1 super family | cl20401 | Zinc-finger domain of monoamine-oxidase A repressor R1; R1 is a transcription factor repressor ... |
149-211 | 1.76e-05 | ||
Zinc-finger domain of monoamine-oxidase A repressor R1; R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type. The actual alignment was detected with superfamily member pfam10497: Pssm-ID: 463117 Cd Length: 99 Bit Score: 44.18 E-value: 1.76e-05
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| JmjC | smart00558 | A domain family that is part of the cupin metalloenzyme superfamily; Probable enzymes, but of ... |
621-689 | 4.29e-04 | ||
A domain family that is part of the cupin metalloenzyme superfamily; Probable enzymes, but of unknown functions, that regulate chromatin reorganisation processes (Clissold and Ponting, in press). : Pssm-ID: 214721 Cd Length: 58 Bit Score: 38.77 E-value: 4.29e-04
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| Name | Accession | Description | Interval | E-value | ||
| zf-4CXXC_R1 | pfam10497 | Zinc-finger domain of monoamine-oxidase A repressor R1; R1 is a transcription factor repressor ... |
149-211 | 1.76e-05 | ||
Zinc-finger domain of monoamine-oxidase A repressor R1; R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type. Pssm-ID: 463117 Cd Length: 99 Bit Score: 44.18 E-value: 1.76e-05
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| JmjC | smart00558 | A domain family that is part of the cupin metalloenzyme superfamily; Probable enzymes, but of ... |
621-689 | 4.29e-04 | ||
A domain family that is part of the cupin metalloenzyme superfamily; Probable enzymes, but of unknown functions, that regulate chromatin reorganisation processes (Clissold and Ponting, in press). Pssm-ID: 214721 Cd Length: 58 Bit Score: 38.77 E-value: 4.29e-04
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| Name | Accession | Description | Interval | E-value | ||
| zf-4CXXC_R1 | pfam10497 | Zinc-finger domain of monoamine-oxidase A repressor R1; R1 is a transcription factor repressor ... |
149-211 | 1.76e-05 | ||
Zinc-finger domain of monoamine-oxidase A repressor R1; R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type. Pssm-ID: 463117 Cd Length: 99 Bit Score: 44.18 E-value: 1.76e-05
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| JmjC | smart00558 | A domain family that is part of the cupin metalloenzyme superfamily; Probable enzymes, but of ... |
621-689 | 4.29e-04 | ||
A domain family that is part of the cupin metalloenzyme superfamily; Probable enzymes, but of unknown functions, that regulate chromatin reorganisation processes (Clissold and Ponting, in press). Pssm-ID: 214721 Cd Length: 58 Bit Score: 38.77 E-value: 4.29e-04
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| Blast search parameters | ||||
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