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Conserved domains on  [gi|134085844|ref|NP_001076930|]
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transmembrane protein 115 [Bos taurus]

Protein Classification

rhomboid family protein( domain architecture ID 10554071)

rhomboid family protein similar to Homo sapiens transmembrane protein 115 that may play a role in retrograde transport of proteins from the Golgi to the endoplasmic reticulum

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1751 pfam08551
Eukaryotic integral membrane protein (DUF1751); This domain is found in eukaryotic integral ...
 49-151 5.34e-37

Eukaryotic integral membrane protein (DUF1751); This domain is found in eukaryotic integral membrane proteins. Swiss:Q12239, a Saccharomyces cerervisiae protein, has been shown to localize COP II vesicles.


:

Pssm-ID: 369945  Cd Length: 99  Bit Score: 128.52  E-value: 5.34e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134085844   49 PGYLFPpnfWIWTLATHGLMEQHVWDVAISLATVVVAGRLLEPLWGALELLIFFSVVNVSVGLLGAFAYLLTYMASFNLV 128
Cdd:pfam08551   1 PGYTFP---YPWTLLTSGFVEQNVWGVLVSLLTLLLGGKYLERLWGSRELLKFILVVNVITNLLVFLYYLLLYMITGSER 77

                          90       100
                  ....*....|....*....|...
gi 134085844  129 YLFtVRIHGALGFLGGVLVALKQ 151
Cdd:pfam08551  78 YLF-VPIHGNYGILAGFLVAFKQ 99
 
Name Accession Description Interval E-value
DUF1751 pfam08551
Eukaryotic integral membrane protein (DUF1751); This domain is found in eukaryotic integral ...
 49-151 5.34e-37

Eukaryotic integral membrane protein (DUF1751); This domain is found in eukaryotic integral membrane proteins. Swiss:Q12239, a Saccharomyces cerervisiae protein, has been shown to localize COP II vesicles.


Pssm-ID: 369945  Cd Length: 99  Bit Score: 128.52  E-value: 5.34e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134085844   49 PGYLFPpnfWIWTLATHGLMEQHVWDVAISLATVVVAGRLLEPLWGALELLIFFSVVNVSVGLLGAFAYLLTYMASFNLV 128
Cdd:pfam08551   1 PGYTFP---YPWTLLTSGFVEQNVWGVLVSLLTLLLGGKYLERLWGSRELLKFILVVNVITNLLVFLYYLLLYMITGSER 77

                          90       100
                  ....*....|....*....|...
gi 134085844  129 YLFtVRIHGALGFLGGVLVALKQ 151
Cdd:pfam08551  78 YLF-VPIHGNYGILAGFLVAFKQ 99
 
Name Accession Description Interval E-value
DUF1751 pfam08551
Eukaryotic integral membrane protein (DUF1751); This domain is found in eukaryotic integral ...
 49-151 5.34e-37

Eukaryotic integral membrane protein (DUF1751); This domain is found in eukaryotic integral membrane proteins. Swiss:Q12239, a Saccharomyces cerervisiae protein, has been shown to localize COP II vesicles.


Pssm-ID: 369945  Cd Length: 99  Bit Score: 128.52  E-value: 5.34e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 134085844   49 PGYLFPpnfWIWTLATHGLMEQHVWDVAISLATVVVAGRLLEPLWGALELLIFFSVVNVSVGLLGAFAYLLTYMASFNLV 128
Cdd:pfam08551   1 PGYTFP---YPWTLLTSGFVEQNVWGVLVSLLTLLLGGKYLERLWGSRELLKFILVVNVITNLLVFLYYLLLYMITGSER 77

                          90       100
                  ....*....|....*....|...
gi 134085844  129 YLFtVRIHGALGFLGGVLVALKQ 151
Cdd:pfam08551  78 YLF-VPIHGNYGILAGFLVAFKQ 99
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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