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Conserved domains on  [gi|130488540|ref|NP_001076272|]
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RCC1-like G exchanging factor-like protein [Danio rerio]

Protein Classification

RCC1-like domain-containing protein( domain architecture ID 20422823)

RCC1 (regulator of chromosome condensation)-like (RLD) domain-containing protein harbors a versatile domain which may perform many different functions, including guanine nucleotide exchange on small GTP-binding proteins, enzyme inhibition or interaction with proteins and lipids

Gene Ontology:  GO:0005085|GO:0007165
PubMed:  18442486

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 100-449 5.26e-47

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


:

Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 165.15  E-value: 5.26e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130488540 100 ACGYGFT--LLASNTkdltkLWGMGLNKDSQLGFQRTQHdksksydyvlEASPVSLPLLnpqeTRVPQVSCGRAHSLVLT 177
Cdd:COG5184    4 AAGGSHScaLKSDGT-----VWCWGDNSYGQLGDGTTTD----------RSTPVRVPGL----SNVVAVAAGGDHTCALK 64

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130488540 178 DSEGVFSMGSNTFGQCGrkiveDEVYSGSHVVHKIEGFdSRVIQVACGQDHSLFLTDRGSVFACGWGADGQTGLGHHNKA 257
Cdd:COG5184   65 ADGTVWCWGNNSYGQLG-----DGTTTDRTTPVKVPGL-TGVVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGDGTTTNR 138

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130488540 258 SCPVPVGGDLAGVTvqQVATYGDCSLAVSTDGQVFGWGNSEYLQLASVTeSTQISSPRllPLKGVGRIRQAACGGTQVAV 337
Cdd:COG5184  139 LTPVQVDAGLSGVV--AIAAGGYHTCALKSDGTVWCWGANSYGQLGDGT-TTDRPTPV--QVGGLSGVVAVAAGGDHSCA 213

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130488540 338 LNEDGDVFVWG---FGILGKGPkLSESAIPERVPATffgrsefnptVKVASIRCGLSHFAAVTDGGELFVWGKNVRGCLG 414
Cdd:COG5184  214 LKSDGTVWCWGsnsSGQLGDGT-TTDRATPVQVAGL----------TGVVAIAAGGSHTCALKSDGTVWCWGDNSYGQLG 282

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 130488540 415 IGKHDDQYFPWRVTVPGHVTDVACGVDHMVALVKS 449
Cdd:COG5184  283 DGTTTDRSTPVKVPGLSGVVAVAAGSSHTCALLTD 317
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
52-108 4.19e-03

Regulator of chromosome condensation (RCC1) repeat;


:

Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 35.19  E-value: 4.19e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 130488540   52 GKVFVWGFSYTGALGIPSFVVpdsgRKKPRKTQLTPycldtEQKISSAACGYGFTLL 108
Cdd:pfam00415   2 GRVYTWGRNDYGQLGLGTTEN----VLVPQKVEGLS-----GNKVVQVACGGDHTVA 49
 
Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 100-449 5.26e-47

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 165.15  E-value: 5.26e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130488540 100 ACGYGFT--LLASNTkdltkLWGMGLNKDSQLGFQRTQHdksksydyvlEASPVSLPLLnpqeTRVPQVSCGRAHSLVLT 177
Cdd:COG5184    4 AAGGSHScaLKSDGT-----VWCWGDNSYGQLGDGTTTD----------RSTPVRVPGL----SNVVAVAAGGDHTCALK 64

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130488540 178 DSEGVFSMGSNTFGQCGrkiveDEVYSGSHVVHKIEGFdSRVIQVACGQDHSLFLTDRGSVFACGWGADGQTGLGHHNKA 257
Cdd:COG5184   65 ADGTVWCWGNNSYGQLG-----DGTTTDRTTPVKVPGL-TGVVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGDGTTTNR 138

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130488540 258 SCPVPVGGDLAGVTvqQVATYGDCSLAVSTDGQVFGWGNSEYLQLASVTeSTQISSPRllPLKGVGRIRQAACGGTQVAV 337
Cdd:COG5184  139 LTPVQVDAGLSGVV--AIAAGGYHTCALKSDGTVWCWGANSYGQLGDGT-TTDRPTPV--QVGGLSGVVAVAAGGDHSCA 213

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130488540 338 LNEDGDVFVWG---FGILGKGPkLSESAIPERVPATffgrsefnptVKVASIRCGLSHFAAVTDGGELFVWGKNVRGCLG 414
Cdd:COG5184  214 LKSDGTVWCWGsnsSGQLGDGT-TTDRATPVQVAGL----------TGVVAIAAGGSHTCALKSDGTVWCWGDNSYGQLG 282

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 130488540 415 IGKHDDQYFPWRVTVPGHVTDVACGVDHMVALVKS 449
Cdd:COG5184  283 DGTTTDRSTPVKVPGLSGVVAVAAGSSHTCALLTD 317
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
400-446 3.51e-09

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 52.52  E-value: 3.51e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 130488540  400 GELFVWGKNVRGCLGIGKHDDQYFPWRVTVPG--HVTDVACGVDHMVAL 446
Cdd:pfam00415   2 GRVYTWGRNDYGQLGLGTTENVLVPQKVEGLSgnKVVQVACGGDHTVAL 50
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
52-108 4.19e-03

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 35.19  E-value: 4.19e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 130488540   52 GKVFVWGFSYTGALGIPSFVVpdsgRKKPRKTQLTPycldtEQKISSAACGYGFTLL 108
Cdd:pfam00415   2 GRVYTWGRNDYGQLGLGTTEN----VLVPQKVEGLS-----GNKVVQVACGGDHTVA 49
 
Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 100-449 5.26e-47

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 165.15  E-value: 5.26e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130488540 100 ACGYGFT--LLASNTkdltkLWGMGLNKDSQLGFQRTQHdksksydyvlEASPVSLPLLnpqeTRVPQVSCGRAHSLVLT 177
Cdd:COG5184    4 AAGGSHScaLKSDGT-----VWCWGDNSYGQLGDGTTTD----------RSTPVRVPGL----SNVVAVAAGGDHTCALK 64

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130488540 178 DSEGVFSMGSNTFGQCGrkiveDEVYSGSHVVHKIEGFdSRVIQVACGQDHSLFLTDRGSVFACGWGADGQTGLGHHNKA 257
Cdd:COG5184   65 ADGTVWCWGNNSYGQLG-----DGTTTDRTTPVKVPGL-TGVVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGDGTTTNR 138

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130488540 258 SCPVPVGGDLAGVTvqQVATYGDCSLAVSTDGQVFGWGNSEYLQLASVTeSTQISSPRllPLKGVGRIRQAACGGTQVAV 337
Cdd:COG5184  139 LTPVQVDAGLSGVV--AIAAGGYHTCALKSDGTVWCWGANSYGQLGDGT-TTDRPTPV--QVGGLSGVVAVAAGGDHSCA 213

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130488540 338 LNEDGDVFVWG---FGILGKGPkLSESAIPERVPATffgrsefnptVKVASIRCGLSHFAAVTDGGELFVWGKNVRGCLG 414
Cdd:COG5184  214 LKSDGTVWCWGsnsSGQLGDGT-TTDRATPVQVAGL----------TGVVAIAAGGSHTCALKSDGTVWCWGDNSYGQLG 282

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 130488540 415 IGKHDDQYFPWRVTVPGHVTDVACGVDHMVALVKS 449
Cdd:COG5184  283 DGTTTDRSTPVKVPGLSGVVAVAAGSSHTCALLTD 317
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 48-424 9.72e-45

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 159.37  E-value: 9.72e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130488540  48 RKPQGKVFVWGFSYTGALGIPSFVvpdsgrkkprkTQLTPYCLDTEQKISSAACGYGFT--LLASNTkdltkLWGMGLNK 125
Cdd:COG5184   13 LKSDGTVWCWGDNSYGQLGDGTTT-----------DRSTPVRVPGLSNVVAVAAGGDHTcaLKADGT-----VWCWGNNS 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130488540 126 DSQLGfqrtqhdkskSYDYVLEASPVSLPLLnpqeTRVPQVSCGRAHSLVLTDSEGVFSMGSNTFGQCGrkiveDEVYSG 205
Cdd:COG5184   77 YGQLG----------DGTTTDRTTPVKVPGL----TGVVAVAAGYYHSCALKSDGTVWCWGDNSSGQLG-----DGTTTN 137

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130488540 206 SHVVHKIEGFDSRVIQVACGQDHSLFLTDRGSVFACGWGADGQTGLGHHNKASCPVPVGGdLAGVTvqQVATYGDCSLAV 285
Cdd:COG5184  138 RLTPVQVDAGLSGVVAIAAGGYHTCALKSDGTVWCWGANSYGQLGDGTTTDRPTPVQVGG-LSGVV--AVAAGGDHSCAL 214

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130488540 286 STDGQVFGWGNSEYLQLASVTESTQiSSPRLLPlkGVGRIRQAACGGTQVAVLNEDGDVFVWG---FGILGKGPKlSESA 362
Cdd:COG5184  215 KSDGTVWCWGSNSSGQLGDGTTTDR-ATPVQVA--GLTGVVAIAAGGSHTCALKSDGTVWCWGdnsYGQLGDGTT-TDRS 290

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 130488540 363 IPERVPatffgrsefnPTVKVASIRCGLSHFAAVTDGGELFVWGKNVRGCLGIGKHDDQYFP 424
Cdd:COG5184  291 TPVKVP----------GLSGVVAVAAGSSHTCALLTDGTVWCWGDNAYGQLGDGTTTDRSTP 342
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 165-446 3.25e-43

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 155.13  E-value: 3.25e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130488540 165 QVSCGRAHSLVLTDSEGVFSMGSNTFGQCGRKIVEDevysgSHVVHKIEGFdSRVIQVACGQDHSLFLTDRGSVFACGWG 244
Cdd:COG5184    2 QVAAGGSHSCALKSDGTVWCWGDNSYGQLGDGTTTD-----RSTPVRVPGL-SNVVAVAAGGDHTCALKADGTVWCWGNN 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130488540 245 ADGQTGLGHHNKASCPVPVGGdLAGVTvqQVATYGDCSLAVSTDGQVFGWGNSEYLQLASVTeSTQISSPRLLPLkGVGR 324
Cdd:COG5184   76 SYGQLGDGTTTDRTTPVKVPG-LTGVV--AVAAGYYHSCALKSDGTVWCWGDNSSGQLGDGT-TTNRLTPVQVDA-GLSG 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130488540 325 IRQAACGGTQVAVLNEDGDVFVWG---FGILGKGpKLSESAIPERVPATffgrsefnptVKVASIRCGLSHFAAVTDGGE 401
Cdd:COG5184  151 VVAIAAGGYHTCALKSDGTVWCWGansYGQLGDG-TTTDRPTPVQVGGL----------SGVVAVAAGGDHSCALKSDGT 219

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 130488540 402 LFVWGKNVRGCLGIGKHDDQYFPWRVTVPGHVTDVACGVDHMVAL 446
Cdd:COG5184  220 VWCWGSNSSGQLGDGTTTDRATPVQVAGLTGVVAIAAGGSHTCAL 264
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 220-446 4.98e-34

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 130.48  E-value: 4.98e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130488540 220 IQVACGQDHSLFLTDRGSVFACGWGADGQTGLGHHNKASCPVPVGGdLAGVTvqQVATYGDCSLAVSTDGQVFGWGNSEY 299
Cdd:COG5184    1 TQVAAGGSHSCALKSDGTVWCWGDNSYGQLGDGTTTDRSTPVRVPG-LSNVV--AVAAGGDHTCALKADGTVWCWGNNSY 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130488540 300 LQLASVTeSTQISSPRLLPlkGVGRIRQAACGGTQVAVLNEDGDVFVWG---FGILGKGPKLSeSAIPERVPATFFGrse 376
Cdd:COG5184   78 GQLGDGT-TTDRTTPVKVP--GLTGVVAVAAGYYHSCALKSDGTVWCWGdnsSGQLGDGTTTN-RLTPVQVDAGLSG--- 150

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130488540 377 fnptvkVASIRCGLSHFAAVTDGGELFVWGKNVRGCLGIGKHDDQYFPWRVTVPGHVTDVACGVDHMVAL 446
Cdd:COG5184  151 ------VVAIAAGGYHTCALKSDGTVWCWGANSYGQLGDGTTTDRPTPVQVGGLSGVVAVAAGGDHSCAL 214
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 52-261 2.44e-17

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 82.72  E-value: 2.44e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130488540  52 GKVFVWGFSYTGALGIPSFVvpdsgrkkprkTQLTPYCLDTEQKISSAACGYGFT--LLASNTkdltkLWGMGLNKDSQL 129
Cdd:COG5184  168 GTVWCWGANSYGQLGDGTTT-----------DRPTPVQVGGLSGVVAVAAGGDHScaLKSDGT-----VWCWGSNSSGQL 231

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 130488540 130 GFQRTQHdksksydyvlEASPVSLPLLnpqeTRVPQVSCGRAHSLVLTDSEGVFSMGSNTFGQCGrkiveDEVYSGSHVV 209
Cdd:COG5184  232 GDGTTTD----------RATPVQVAGL----TGVVAIAAGGSHTCALKSDGTVWCWGDNSYGQLG-----DGTTTDRSTP 292

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 130488540 210 HKIEGFdSRVIQVACGQDHSLFLTDRGSVFACGWGADGQTGLGHHNKASCPV 261
Cdd:COG5184  293 VKVPGL-SGVVAVAAGSSHTCALLTDGTVWCWGDNAYGQLGDGTTTDRSTPV 343
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
400-446 3.51e-09

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 52.52  E-value: 3.51e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 130488540  400 GELFVWGKNVRGCLGIGKHDDQYFPWRVTVPG--HVTDVACGVDHMVAL 446
Cdd:pfam00415   2 GRVYTWGRNDYGQLGLGTTENVLVPQKVEGLSgnKVVQVACGGDHTVAL 50
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
182-232 1.60e-07

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 47.51  E-value: 1.60e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 130488540  182 VFSMGSNTFGQCGRKIVEDEvysgsHVVHKIEGF-DSRVIQVACGQDHSLFL 232
Cdd:pfam00415   4 VYTWGRNDYGQLGLGTTENV-----LVPQKVEGLsGNKVVQVACGGDHTVAL 50
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
219-248 4.62e-07

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 45.88  E-value: 4.62e-07
                          10        20        30
                  ....*....|....*....|....*....|
gi 130488540  219 VIQVACGQDHSLFLTDRGSVFACGWGADGQ 248
Cdd:pfam13540   1 VVSVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
288-338 8.07e-07

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 45.59  E-value: 8.07e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 130488540  288 DGQVFGWGNSEYLQLASVTESTQiSSPRLLPLKGVGRIRQAACGGTQVAVL 338
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENV-LVPQKVEGLSGNKVVQVACGGDHTVAL 50
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
165-192 1.48e-05

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 41.64  E-value: 1.48e-05
                          10        20
                  ....*....|....*....|....*...
gi 130488540  165 QVSCGRAHSLVLTDSEGVFSMGSNTFGQ 192
Cdd:pfam13540   3 SVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
236-285 8.32e-05

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 39.81  E-value: 8.32e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 130488540  236 GSVFACGWGADGQTGLGHHNKASCPVPVGGdLAGVTVQQVATYGDCSLAV 285
Cdd:pfam00415   2 GRVYTWGRNDYGQLGLGTTENVLVPQKVEG-LSGNKVVQVACGGDHTVAL 50
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
383-412 1.06e-04

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 39.33  E-value: 1.06e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 130488540  383 VASIRCGLSHFAAVTDGGELFVWGKNVRGC 412
Cdd:pfam13540   1 VVSVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
52-108 4.19e-03

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 35.19  E-value: 4.19e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 130488540   52 GKVFVWGFSYTGALGIPSFVVpdsgRKKPRKTQLTPycldtEQKISSAACGYGFTLL 108
Cdd:pfam00415   2 GRVYTWGRNDYGQLGLGTTEN----VLVPQKVEGLS-----GNKVVQVACGGDHTVA 49
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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