|
Name |
Accession |
Description |
Interval |
E-value |
| CENP-F_N |
pfam10481 |
Cenp-F N-terminal domain; Mitosin or centromere-associated protein-F (Cenp-F) is found bound ... |
1-300 |
1.67e-135 |
|
Cenp-F N-terminal domain; Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal par to f the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein.
Pssm-ID: 463106 [Multi-domain] Cd Length: 304 Bit Score: 426.55 E-value: 1.67e-135
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1 MSWALEEWKEGLPSRALQKIQELEGQLEKLKKEKQQRQFQLDSLEAALQKQKQKVEDGKTEGADLKRENQRLMEICEHLE 80
Cdd:pfam10481 1 MSWAVEEWKEGLPTKALQKIQELESQLDKLKKERQQKQFQLESLEAALQKQKQKVENEKNEGSALKRENQSLMESCDNLE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 81 KSRQKLSHELQVKESQVNLQESQLSSCKKQIEKLEQELKRCKSEFERSQQVAQSADVSLNPCSTPQKLFATPLTPS---- 156
Cdd:pfam10481 81 KSRQKISHDLQVKESQVNFLEGQLNSSKKQIEKLEQELKRYKSELERSQQALLAGDVSLQPCSTPQKSFATPLTPSqrhn 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 157 -STYEDLKEKYNKEVEERKRLEEEVKALHAKKVSLPVSQATMNHRDIARHQASSSVFPWQQENTPSRLSSDALKTPLRRD 235
Cdd:pfam10481 161 dSKYEELQEKYNKEVEERKRLEAELKVLQVKKTNQTLPQSTVSHRDIARHQASSSVFPWQQEKTPSRQSSDAQETPLKRG 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 189458891 236 GSAAHFLGE-EVSPNKSSMKTgrGDCSSLPGEPHSAQLLHQAKAQNQDLKSKMTELELRLQGQEKE 300
Cdd:pfam10481 241 FTASHFLWEhEETPSKRSQRS--SSNSSLQSNSSSSQLMDQLKAQNQELRSRVSELELRLQAQEKD 304
|
|
| CENP-F_leu_zip |
pfam10473 |
Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; Cenp-F, a centromeric kinetochore, ... |
2313-2449 |
1.75e-38 |
|
Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance.
Pssm-ID: 463102 [Multi-domain] Cd Length: 140 Bit Score: 141.66 E-value: 1.75e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2313 DEKKHQNILEQLKESKHHADLLKDRVENLEQELILSEKN---MIFQAEKSKAEIQTLKSEIQRMAQNLQDLQLELISTRS 2389
Cdd:pfam10473 1 DEKKQLHVLEKLKESERKADSLKDKVENLERELEMSEENqelAILEAENSKAEVETLKAEIEEMAQNLRDLELDLVTLRS 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2390 ENENLMKELKKEQERVSDLETINSSIENLLKDKEQEKVQMKEEAKITVEMLQTQLKELNE 2449
Cdd:pfam10473 81 EKENLTKELQKKQERVSELESLNSSLENLLEEKEQEKVQMKEESKTAVEMLQTQLKELNE 140
|
|
| CENP-F_leu_zip |
pfam10473 |
Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; Cenp-F, a centromeric kinetochore, ... |
2131-2270 |
2.64e-33 |
|
Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance.
Pssm-ID: 463102 [Multi-domain] Cd Length: 140 Bit Score: 126.64 E-value: 2.64e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2131 DEKKHLSAVAKLKESQRESDSLKDTVETLERELERSEENQELAILDSENLKAEVETLKAQKDEMTKSLRIFELDLVTVRT 2210
Cdd:pfam10473 1 DEKKQLHVLEKLKESERKADSLKDKVENLERELEMSEENQELAILEAENSKAEVETLKAEIEEMAQNLRDLELDLVTLRS 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2211 ERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQMEEDSKSAMLMLQMQLKELRE 2270
Cdd:pfam10473 81 EKENLTKELQKKQERVSELESLNSSLENLLEEKEQEKVQMKEESKTAVEMLQTQLKELNE 140
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1959-2746 |
6.48e-21 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 101.29 E-value: 6.48e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1959 ERNRLREELDNVSKESKALDQMSKKMKEKIEELESHQRESLRHIGAVESEVKDKADLIQtlsfnvgELTKDKAHLQEQLQ 2038
Cdd:TIGR02168 240 ELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEIS-------RLEQQKQILRERLA 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2039 NLQNDSQELSLAIGELEIQIGQLNKEKESLVKESQNFQIKLTESECEKQTISKALEVALKEKGEFAVQLSSAQEEVHQLR 2118
Cdd:TIGR02168 313 NLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLE 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2119 RGIEKLSVRIEadekkhlSAVAKLKESQRESDSLKDTVETlerelerseENQELAILDSENLKAEVETLKAQKDEMTKSL 2198
Cdd:TIGR02168 393 LQIASLNNEIE-------RLEARLERLEDRRERLQQEIEE---------LLKKLEEAELKELQAELEELEEELEELQEEL 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2199 RIFELDLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQarvqmEEDSKSAMLMLQMQLKELREEVAALCND 2278
Cdd:TIGR02168 457 ERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEG-----FSEGVKALLKNQSGLSGILGVLSELISV 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2279 QETLkaqEQSLdqpgEEVhhLKSSIRKLKVHIDADEKKHQNILEQLKESKHHADLLKDRVENLEQELILSEKNMIFQAEK 2358
Cdd:TIGR02168 532 DEGY---EAAI----EAA--LGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLG 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2359 SKAEIQTLKSEIQRMAQNLqdLQLELISTRSENE-NLMKELKKEQERVS-DLETINSSIENLLKDKEQEKVQMKEEAKIt 2436
Cdd:TIGR02168 603 VAKDLVKFDPKLRKALSYL--LGGVLVVDDLDNAlELAKKLRPGYRIVTlDGDLVRPGGVITGGSAKTNSSILERRREI- 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2437 vEMLQTQLKELNETVVSLCNDQEVSKTKEQNLGSQVQTLELEKAQLLQDLGEAKNKYIIFQSSVNALTQEVEAGKQKLEK 2516
Cdd:TIGR02168 680 -EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTE 758
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2517 GEKEIRTLKEQLksqEQLVCKLAQVEGEQQLWQKQKLELRNVTMALEQKVQVLQSENNTLQSTYEALQNSHKSLESELGL 2596
Cdd:TIGR02168 759 LEAEIEELEERL---EEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAA 835
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2597 IKLEKVALVERVSTISGKEAELQRELRDMLQKTTQLSEDYNKEKNRlteevevlreelqntKAAHLKSVNQLEKELQRAQ 2676
Cdd:TIGR02168 836 TERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNE---------------RASLEEALALLRSELEELS 900
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2677 GKIKLMLKSCRQLEGEKEMLQKELSQLEaAQQQRAGSLVDSNVDEVMTENKALKETLEEKVKEADKYLDK 2746
Cdd:TIGR02168 901 EELRELESKRSELRRELEELREKLAQLE-LRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEE 969
|
|
| CENP-F_C_Rb_bdg |
pfam10490 |
Rb-binding domain of kinetochore protein Cenp-F/LEK1; Cenp-F, a centromeric kinetochore, ... |
2850-2896 |
9.38e-21 |
|
Rb-binding domain of kinetochore protein Cenp-F/LEK1; Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway. This domain is at the very C-terminus of the C-terminal coiled-coil, and is one of the key Rb-binding domains.
Pssm-ID: 463111 Cd Length: 47 Bit Score: 87.50 E-value: 9.38e-21
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 189458891 2850 PAEHEQETEFEPEGLPEVVKKGFADIPTGKTSPYILRRTTMATRTSP 2896
Cdd:pfam10490 1 NRAEQDDEEFEPEGLPEVVQKGFADIPSGEVSPYILRRTTLQLRCSP 47
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1935-2680 |
2.04e-20 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 99.75 E-value: 2.04e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1935 LERDTESKQKvIIDLKEELFTV-----ISERNRLREELDNVSKESKALDQMSKKMKEKIEELESHQRESLRHIGAVESEV 2009
Cdd:TIGR02168 205 LERQAEKAER-YKELKAELRELelallVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEI 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2010 KDKADLIQTLSFNVGELTKDKAHLQEQLQNLQNDSQELSLAIGELEIQIGQLNKEKESLVKESQNFQIKLTESECEKQTI 2089
Cdd:TIGR02168 284 EELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEEL 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2090 SKALEVALKEKGEFAVQLSSAQEEVHQLRRGIEKLSVRIEadekkhlSAVAKLKESQRESDSLKDTVETLerelerseeN 2169
Cdd:TIGR02168 364 EAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIE-------RLEARLERLEDRRERLQQEIEEL---------L 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2170 QELAILDSENLKAEVETLKAQKDEMTKSLRIFELDLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKE--QAR 2247
Cdd:TIGR02168 428 KKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEgfSEG 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2248 VQMEEDSKSAMLMLQMQLKELRE---------EVA-------ALCNDQETLKAQEQSLDQ-------------------- 2291
Cdd:TIGR02168 508 VKALLKNQSGLSGILGVLSELISvdegyeaaiEAAlggrlqaVVVENLNAAKKAIAFLKQnelgrvtflpldsikgteiq 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2292 --PGEEVHHLKSSIRKLKVHIDADEKKH----------------QNILEQLKESKHHAdllkdRVENLEQELILSEKNMI 2353
Cdd:TIGR02168 588 gnDREILKNIEGFLGVAKDLVKFDPKLRkalsyllggvlvvddlDNALELAKKLRPGY-----RIVTLDGDLVRPGGVIT 662
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2354 FQAEKS-------KAEIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERVSDLETINSSIENLLKDKEQEK 2426
Cdd:TIGR02168 663 GGSAKTnssilerRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEV 742
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2427 VQMKEEakitVEMLQTQLKELNETVVSLCNDQEVSKTKEQNLGSQVQTLELEKAQLLQDLGEAKNKYIIFQSSVNALTQE 2506
Cdd:TIGR02168 743 EQLEER----IAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEE 818
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2507 VEAGKQKLEKGEKEIRTLKEQLksqeqlvcklaqvEGEQQLWQKQKLELRNVTMALEQkvqvLQSENNTLQSTYEALQNS 2586
Cdd:TIGR02168 819 AANLRERLESLERRIAATERRL-------------EDLEEQIEELSEDIESLAAEIEE----LEELIEELESELEALLNE 881
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2587 HKSLESELGLIKLEKVALVERVSTISGKEAELQRELRDMLQKTTQLSEDYNKEKNRLTEEVEVLREELQNTKAAHLKSVN 2666
Cdd:TIGR02168 882 RASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALEN 961
|
810
....*....|....
gi 189458891 2667 QLEKELQRAQGKIK 2680
Cdd:TIGR02168 962 KIEDDEEEARRRLK 975
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
290-1122 |
1.74e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 87.03 E-value: 1.74e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 290 LELRLQGQEKEMRSQVNKCQDLQLQLEKTKVELIEKERILNKTRDEVVRSTAQYDQAAAKCTTLEQKLKTLTEELschrQ 369
Cdd:TIGR02168 216 KELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL----Y 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 370 NAESAKRSLEQRIKekekelqeelsRQHQSFQALDSEYTQMKTRLTQELQQVKHLhstlQLELEKVTSVKQQLERNLEEI 449
Cdd:TIGR02168 292 ALANEISRLEQQKQ-----------ILRERLANLERQLEELEAQLEELESKLDEL----AEELAELEEKLEELKEELESL 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 450 RLKLSRAEQALQASQVAENELRRSSEEMKKENSLIRSQSEQRTREVCHLEEELGKVKVSLSKSQNFAEEMKAKNTSQEim 529
Cdd:TIGR02168 357 EAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAE-- 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 530 LRDLQEKLNQQENslTLEKLKLALADLERQRNCSQDLLKKREHHIDQLNNKLNKIEKEFETLLSALELKKKECEELKEEK 609
Cdd:TIGR02168 435 LKELQAELEELEE--ELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALL 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 610 NQISFWKIDSEKLINQIESEKEillgkinhLETSLKTqqvspDSNERIRTLEMERENFTVEIKNLqsmldskMVEIKTQK 689
Cdd:TIGR02168 513 KNQSGLSGILGVLSELISVDEG--------YEAAIEA-----ALGGRLQAVVVENLNAAKKAIAF-------LKQNELGR 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 690 QAYLELQQKSESSDQKHQKEIENMCLKANKLTGQVESLECKLQ-----LLSSEVVTKD-QQYQDLRMEYEtlrdllksRG 763
Cdd:TIGR02168 573 VTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRkalsyLLGGVLVVDDlDNALELAKKLR--------PG 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 764 SSLVTNEDNQRSSednqrssednqRGSLAFEqqpavSDSFANVMGRKgsiNSERSDCSVDGGRSPEHIAILQNRVTSLES 843
Cdd:TIGR02168 645 YRIVTLDGDLVRP-----------GGVITGG-----SAKTNSSILER---RREIEELEEKIEELEEKIAELEKALAELRK 705
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 844 SLESQNQMNSDLQMRCEELLQIKGEVEENLSKAEQIHQNfVAETNQCISKLQEDAAVHQNIVAETLATLESK----EKEL 919
Cdd:TIGR02168 706 ELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQ-LEERIAQLSKELTELEAEIEELEERLEEAEEElaeaEAEI 784
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 920 QLLKEKLEAQQTEVQKLNKNNCLLEGTLKELQLLSDTLSSEKKEMNSIISLSKKNIEELTQANEALKEVNEALEQEkmnl 999
Cdd:TIGR02168 785 EELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAE---- 860
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1000 lqkHEKITSCIAEQERSIAELSDQYKQERLQLLQRCEETEAVLEDLRGNYKTAQENNAKLEcmlsECTALCENRKNELEQ 1079
Cdd:TIGR02168 861 ---IEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELE----ELREKLAQLELRLEG 933
|
810 820 830 840
....*....|....*....|....*....|....*....|...
gi 189458891 1080 LKETFAKEQQEFLTKLAFAEEQNRKLMLELEIEQQTVRSEITN 1122
Cdd:TIGR02168 934 LEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKR 976
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2034-2774 |
5.54e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 85.11 E-value: 5.54e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2034 QEQLQNLQNDSQELSLAIGELEIQIGQLNKEKESLVKESQnfqIKLTESECEKQTISKALEVALKEKGEFAVQLSSAQEE 2113
Cdd:TIGR02168 178 ERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKE---LKAELRELELALLVLRLEELREELEELQEELKEAEEE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2114 VHQLRRGIEKLSVRIEADEKKHLSAVAKLKESQRESDSLKDTVETLERELERSEENQELAILDSENLKAEVETLKAQKDE 2193
Cdd:TIGR02168 255 LEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDE 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2194 MTKSLRIFELDLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQMEEdsksamlmlqmQLKELREEVA 2273
Cdd:TIGR02168 335 LAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLEL-----------QIASLNNEIE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2274 ALCNDQETLKAQEQSLDQPGEEVHHLKSSIRKLKVHIDADEKKhqnilEQLKESKHHADLLKDRVENLEQELILSEkNMI 2353
Cdd:TIGR02168 404 RLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELE-----EELEELQEELERLEEALEELREELEEAE-QAL 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2354 FQAEKSKAEIQTLKSEIQRMAQNLQDLQ--------------------LELISTRSENENLMKELKKE---QERVSDLET 2410
Cdd:TIGR02168 478 DAAERELAQLQARLDSLERLQENLEGFSegvkallknqsglsgilgvlSELISVDEGYEAAIEAALGGrlqAVVVENLNA 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2411 INSSIEnLLKDKEQEKVQMKEEAKI---TVEMLQTQLKELNETVVSLCNDQEVSKTKEQNLGSQ-------VQTLelekA 2480
Cdd:TIGR02168 558 AKKAIA-FLKQNELGRVTFLPLDSIkgtEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYllggvlvVDDL----D 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2481 QLLQDLGEAKNKYIIFQ------SSVNALTQEVEAGKQKLEKGEKEIRTLKEQLKSQEQLV----CKLAQVEGEQQLWQK 2550
Cdd:TIGR02168 633 NALELAKKLRPGYRIVTldgdlvRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIaeleKALAELRKELEELEE 712
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2551 QKLELRNVTMALEQKVQVLQSENNTLQSTYEALQNSHKSLESELGLIKLEKVALVERVSTISGKEAE-------LQRELR 2623
Cdd:TIGR02168 713 ELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEaeaeieeLEAQIE 792
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2624 DMLQKTTQLSEDYNKEKNRLTE------EVEVLREELQNTKAAHLKSVNQLEKELQRAQGKIKLMLKSCRQLEGEKEMLQ 2697
Cdd:TIGR02168 793 QLKEELKALREALDELRAELTLlneeaaNLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELE 872
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 189458891 2698 KELSQLEA--AQQQRAGSLVDSNVDEVMTENKalkeTLEEKVKEADKYLDKycsLLISHEELEKAKEILEIEVARLKSR 2774
Cdd:TIGR02168 873 SELEALLNerASLEEALALLRSELEELSEELR----ELESKRSELRRELEE---LREKLAQLELRLEGLEVRIDNLQER 944
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1771-2608 |
1.10e-15 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 84.35 E-value: 1.10e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1771 QNLQLQKDTLNENLRLLPEVEDWDKKVesLLNEIMEADSKLSLQEVQLKMKIATCIQLEKIVKDLRKEKADLSEKLEslp 1850
Cdd:TIGR02169 201 ERLRREREKAERYQALLKEKREYEGYE--LLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLE--- 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1851 cnqEVCLRVER--SEEDLGFNLDMGAnellSKSTKDNATNTEDNYKEKFLDMERELTRIKSEKANIEHHILSVETNLEVV 1928
Cdd:TIGR02169 276 ---ELNKKIKDlgEEEQLRVKEKIGE----LEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1929 QAEKLCLERDTESKQKVIIDLKEELFTVISERNRLREELDNVSKESKALdqmskkmKEKIEELESHQREslrhigavese 2008
Cdd:TIGR02169 349 RKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKL-------KREINELKRELDR----------- 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2009 vkdKADLIQTLSFNVGELTKDKAHLQEQLQNLQNDSQELSLAIGELEIQIGQLNKEKESLvkESQNFQIKLTESECEKQT 2088
Cdd:TIGR02169 411 ---LQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKY--EQELYDLKEEYDRVEKEL 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2089 ISKALEVALKEKgefavQLSSAQEEVHQLRRGIEKLSVRIEAdekkHLSAVAKLKESQRESDSlkdTVETLERELErsee 2168
Cdd:TIGR02169 486 SKLQRELAEAEA-----QARASEERVRGGRAVEEVLKASIQG----VHGTVAQLGSVGERYAT---AIEVAAGNRL---- 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2169 nQELAILDSENLKAEVETLKAQK---------DEMTKSLRI-----------FELDLVTVRTERENLAKQLQEKQSRVSE 2228
Cdd:TIGR02169 550 -NNVVVEDDAVAKEAIELLKRRKagratflplNKMRDERRDlsilsedgvigFAVDLVEFDPKYEPAFKYVFGDTLVVED 628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2229 LDE--------RCSSLRRLLEEKEQARVQMEEDSKSAMLM---LQMQLKELREEVAALCNDQETLKAQEQSLDQpgeEVH 2297
Cdd:TIGR02169 629 IEAarrlmgkyRMVTLEGELFEKSGAMTGGSRAPRGGILFsrsEPAELQRLRERLEGLKRELSSLQSELRRIEN---RLD 705
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2298 HLKSSIRKLKVHIDADEKKHQNILEQLKESKHHADLLKDRVENLEQELilseknmifqaEKSKAEIQTLKSEIQRMAQNL 2377
Cdd:TIGR02169 706 ELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEI-----------ENVKSELKELEARIEELEEDL 774
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2378 QDLQLELIS-----TRSENENLMKELKKEQERVSDLETINSSIENLLKDKEQEKVQMKEEakitVEMLQTQLKELNETVV 2452
Cdd:TIGR02169 775 HKLEEALNDlearlSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKE----IQELQEQRIDLKEQIK 850
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2453 SLCNDQEVSKTKEQNLGSQVQTLELEKAQLLQDLGEAKNKYIIFQSSVNALTQEVEAGKQKLEKGEKEIRTLKEQLKSQE 2532
Cdd:TIGR02169 851 SIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALE 930
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 189458891 2533 QLVCKLAQVEGEQQLWQKQKLELRNVTM---ALEQKVQVLQSENNTLQSTYEALQNSHKSLESELGLIKLEKVALVERV 2608
Cdd:TIGR02169 931 EELSEIEDPKGEDEEIPEEELSLEDVQAelqRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERI 1009
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1883-2592 |
2.01e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 83.57 E-value: 2.01e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1883 KDNATNTEDNYKEKFLDMERELTRIKSEKANIEHHILSVETNLEVVQAEKLCLERDTESKQKVIIDLKEELFTVISERNR 1962
Cdd:TIGR02168 241 LEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEE 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1963 LREELDNVSKESKALDQMSKKMKEKIEELESHQRESLRHIGAVESEVKDKADLIQTLSFNVGELTKDKAHLQEQLQNLQN 2042
Cdd:TIGR02168 321 LEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNN 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2043 DSQELSLAIGELEIQIGQLNKEKESLVKESQNFQIKLTESECEkqTISKALEVALKEKGEFAVQLSSAQEEVHQLRRGIE 2122
Cdd:TIGR02168 401 EIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELE--ELEEELEELQEELERLEEALEELREELEEAEQALD 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2123 KLsvriEADEKKHLSAVAKLKESQRESDSLKDTVETLERELERSEENQ-------------ELAI----------LDSEN 2179
Cdd:TIGR02168 479 AA----ERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILgvlselisvdegyEAAIeaalggrlqaVVVEN 554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2180 LKAEVETLKAQKDEMTKSLRIFELDLVTVRTERENLAKQLQEKQSRVSELDERCSS------------------------ 2235
Cdd:TIGR02168 555 LNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFdpklrkalsyllggvlvvddldna 634
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2236 --LRRLLEEKEQ-------------ARVQMEEDSKSAMLMLQMQLKELREEVAALcndQETLKAQEQSLDQPGEEVHHLK 2300
Cdd:TIGR02168 635 leLAKKLRPGYRivtldgdlvrpggVITGGSAKTNSSILERRREIEELEEKIEEL---EEKIAELEKALAELRKELEELE 711
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2301 SSIRKLKVHIDADEKKHQNILEQLKESKHHADLLKDRVENLEQELILSEKNMIFQAEK----------SKAEIQTLKSEI 2370
Cdd:TIGR02168 712 EELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERleeaeeelaeAEAEIEELEAQI 791
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2371 QRMAQNLQDLQLELISTRSENENLMKELKKEQERVSDLETINSSIENLLKDKEQEKVQMKEE-AKITVEM--LQTQLKEL 2447
Cdd:TIGR02168 792 EQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDiESLAAEIeeLEELIEEL 871
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2448 NETVVSLCNDQEVSKTKEQNLGSQVQTLELEKAQLLQDLGEAKNKYiifqssvNALTQEVEAGKQKLEKGEKEIRTLKEQ 2527
Cdd:TIGR02168 872 ESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRREL-------EELREKLAQLELRLEGLEVRIDNLQER 944
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 189458891 2528 LKSQEQLVCKLAQ-----VEGEQQLWQKQKLELRN-------VTMALEQKVQVLQSENNTLQSTYEALQNSHKSLES 2592
Cdd:TIGR02168 945 LSEEYSLTLEEAEalenkIEDDEEEARRRLKRLENkikelgpVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEE 1021
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1899-2704 |
2.26e-15 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 83.19 E-value: 2.26e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1899 DMERELTRIKSEKANIEHHILSVETNLEVV--QAEKLCLERDTESKQKVIIDLKEELftvisernrlreELDNVSKESKA 1976
Cdd:TIGR02169 167 EFDRKKEKALEELEEVEENIERLDLIIDEKrqQLERLRREREKAERYQALLKEKREY------------EGYELLKEKEA 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1977 LDQMSKKMKEKIEELESHQRESLRHIGAVESEVKDKADLIQTLSFNVGELTKDkahlqEQLQnLQNDSQELSLAIGELEI 2056
Cdd:TIGR02169 235 LERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEE-----EQLR-VKEKIGELEAEIASLER 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2057 QIGQLNKEKESLVKESQNFQIKLTESECEKQTISKALEVALKEKGEFAVQLSSAQEEVHQLRRGIEKLSVRIEADEKKHL 2136
Cdd:TIGR02169 309 SIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELK 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2137 SAVAKLKESQRESDSLKDTVETLERELERSEENQELAILDSENLKAEVETLKAQKDEMTKSLRIFELDLVTVRTERENLA 2216
Cdd:TIGR02169 389 DYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYE 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2217 KQLQEKQSRVSELDERCSSLRRLLEEKE---QARVQMEEDSKSAMLMLQ----------MQLKELREEVAALC------- 2276
Cdd:TIGR02169 469 QELYDLKEEYDRVEKELSKLQRELAEAEaqaRASEERVRGGRAVEEVLKasiqgvhgtvAQLGSVGERYATAIevaagnr 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2277 ------NDQETLKAQEQSLDQ---------PGEEV--HHLKSSIRKLKVHIDAD------EKKHQN----------ILEQ 2323
Cdd:TIGR02169 549 lnnvvvEDDAVAKEAIELLKRrkagratflPLNKMrdERRDLSILSEDGVIGFAvdlvefDPKYEPafkyvfgdtlVVED 628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2324 LKESKHHadLLKDRVENLEQELILSEKNMI--FQAEKSKAEIQT-LKSEIQRMAQNLQDLQLELISTRSENENLMKELKK 2400
Cdd:TIGR02169 629 IEAARRL--MGKYRMVTLEGELFEKSGAMTggSRAPRGGILFSRsEPAELQRLRERLEGLKRELSSLQSELRRIENRLDE 706
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2401 EQERVSDLETINSSIENLLKDKEQEKVQMKEEAkitvEMLQTQLKELNETVvslcndqEVSKTKEQNLGSQVQTLELEKA 2480
Cdd:TIGR02169 707 LSQELSDASRKIGEIEKEIEQLEQEEEKLKERL----EELEEDLSSLEQEI-------ENVKSELKELEARIEELEEDLH 775
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2481 QLLQDLGEAKNKYiifqssvnaLTQEVEAGKQKLEKGEKEIRTLKEQLKSQEQlvcKLAQVEGEQQLWQKQKLElrnvtm 2560
Cdd:TIGR02169 776 KLEEALNDLEARL---------SHSRIPEIQAELSKLEEEVSRIEARLREIEQ---KLNRLTLEKEYLEKEIQE------ 837
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2561 aLEQKVQVLQSENNTLQSTYEALQNSHKSLESELGLIKLEKVALVERVSTISGKEAELQRELRDMLQKTTQLSEDYNKEK 2640
Cdd:TIGR02169 838 -LQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKR 916
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 189458891 2641 NRLteevevlrEELQNTKAAHLKSVNQLEKELQRAQgKIKLMLKSCRQLEGEKEMLQKELSQLE 2704
Cdd:TIGR02169 917 KRL--------SELKAKLEALEEELSEIEDPKGEDE-EIPEEELSLEDVQAELQRVEEEIRALE 971
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1959-2530 |
8.90e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.05 E-value: 8.90e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1959 ERNRLREELDNVSKESKALDQMSKKMKEKIEELESHQRESLRHIGAVESEVKDKADLIQTLSFNVGELTKDKAHLQEQLQ 2038
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2039 NLQNDSQELSLAIGELEIQIGQLNKEKESLVKESQNFQIKLTESECEKQTISKALEVALKEKGEFAVQLSSAQEEVHQLR 2118
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2119 RGIEKLSVRIEADEKKHLSAVAKLKESQRESDSLKDTVETLERELERSEENQELAILDSENLKAEVETLKAQKDEMTKSL 2198
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2199 RIFELDLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQMEEDsksamlmlQMQLKELREEVAALCND 2278
Cdd:COG1196 473 ALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVA--------VLIGVEAAYEAALEAAL 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2279 QETLKAQEQSLDQPGEEVHHLKSSIRKLKVHIDADEKKHQNILEQLKESKHHADLLKDRVENLEQELILSEKNMIFQAEK 2358
Cdd:COG1196 545 AAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLG 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2359 SKAEIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERVSDLETINSSIEnLLKDKEQEKVQMKEEAKITVE 2438
Cdd:COG1196 625 RTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELE-ELAERLAEEELELEEALLAEE 703
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2439 MLQTQLKELNETVVSLCNDQEVSKTKEQNLGSQVQTLELEKAQLLQDLGEaknkyiifqssvnaltqEVEAGKQKLEKGE 2518
Cdd:COG1196 704 EEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEAL-----------------EELPEPPDLEELE 766
|
570
....*....|..
gi 189458891 2519 KEIRTLKEQLKS 2530
Cdd:COG1196 767 RELERLEREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1770-2449 |
9.85e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.79 E-value: 9.85e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1770 IQNLQLQKDTLN-ENLRLLPEVEDWDKKVESLLNEI-------MEADSKLSLQEVQLKMKIATCIQLEKIVKDLRKEKAD 1841
Cdd:TIGR02168 262 LQELEEKLEELRlEVSELEEEIEELQKELYALANEIsrleqqkQILRERLANLERQLEELEAQLEELESKLDELAEELAE 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1842 LSEKLESLPCNQEVCLRVERSEEDLGFNLdmganellsKSTKDNATNTEDNYKEKFLDMERELTRIKSEKANIEHHILSV 1921
Cdd:TIGR02168 342 LEEKLEELKEELESLEAELEELEAELEEL---------ESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERL 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1922 ETNLEVVQAEKLCLERDTESKQKV-----IIDLKEELFTVISERNRLREELDNVSKESKALDQMSKKMKEKIEELESH-- 1994
Cdd:TIGR02168 413 EDRRERLQQEIEELLKKLEEAELKelqaeLEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARld 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1995 ----QRESLRHIGAVESEVKDKADLIQTLSFNVGELTKDK--------AHLQEQLQNL-QNDSQELSLAIGELE------ 2055
Cdd:TIGR02168 493 slerLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDegyeaaieAALGGRLQAVvVENLNAAKKAIAFLKqnelgr 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2056 --------IQIGQLNKEKESLVKESQNFQIKLTESECEKQTISKALEVALKekGEFAVQ-LSSAQEEVHQLRRG------ 2120
Cdd:TIGR02168 573 vtflpldsIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLG--GVLVVDdLDNALELAKKLRPGyrivtl 650
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2121 ----IEKLSVRIEADEKKHLSAVAKlkesQRESDSLKDTVETLERELERSEENQELAILDSENLKAEVETLKAQKDEMTK 2196
Cdd:TIGR02168 651 dgdlVRPGGVITGGSAKTNSSILER----RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSR 726
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2197 SLRIFELDLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQMEEDSKSamlmLQMQLKELREEVAALc 2276
Cdd:TIGR02168 727 QISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEE----LEAQIEQLKEELKAL- 801
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2277 ndQETLKAQEQSLDQPGEEVHHLKSSIRKLKVHIDADEKKHQNILEQLKESKHHADLLKDRVENLEQELILSEKNMIfQA 2356
Cdd:TIGR02168 802 --REALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELE-AL 878
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2357 EKSKAEIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERVS--------DLETINSSIENLLKDKEQEKVQ 2428
Cdd:TIGR02168 879 LNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLElrleglevRIDNLQERLSEEYSLTLEEAEA 958
|
730 740
....*....|....*....|.
gi 189458891 2429 MKEEAKITVEMLQTQLKELNE 2449
Cdd:TIGR02168 959 LENKIEDDEEEARRRLKRLEN 979
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
413-1030 |
1.26e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 77.28 E-value: 1.26e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 413 RLTQELQQVKHLHSTLQLELEKVTSVKQQLERNLEEIRLKLSRAEQALQASQVAENELRRSSEEMKKENSLIRSQSEQRT 492
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 493 REVCHLEEELGKVKVSLSKSQNFAEEMKAKNTSQEIMLRDLQEKLNQQENSLtLEKLKLALADLERQRNCSQDLLKKREh 572
Cdd:COG1196 316 ERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL-LEAEAELAEAEEELEELAEELLEALR- 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 573 hidQLNNKLNKIEKEFETLLSALELKKKECEELKEEKNQIsfwkIDSEKLINQIESEKEILLGKINHLETSLKTQQvspd 652
Cdd:COG1196 394 ---AAAELAAQLEELEEAEEALLERLERLEEELEELEEAL----AELEEEEEEEEEALEEAAEEEAELEEEEEALL---- 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 653 snERIRTLEMERENFTVEIKNLQSMLDSKMVEIKTQKQAYLELQQKSESSDQKHQKEIENMCLKANKLTGQVES-----L 727
Cdd:COG1196 463 --ELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAayeaaL 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 728 ECKLQLLSSEVVTKDQQYQDLRMEYetLRDLLKSRGSSLVTNEDNQRSSEDNQRSSEDNQRGSLAFEQQPAVSDSFANVM 807
Cdd:COG1196 541 EAALAAALQNIVVEDDEVAAAAIEY--LKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVL 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 808 GrkgSINSERSDCSVDGGRSPEHIAILQNRVTSLESSLESQNQMNSDLQMRCEELLQIKGEVEENLSKAEQIhqnfvaet 887
Cdd:COG1196 619 G---DTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAER-------- 687
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 888 nqcisKLQEDAAVHQNIVAETLATLESKEKELQLLKEKLEAQQTEVQKLNKNNCLLEGTLKELQLLSDTLSSEKKEMNSI 967
Cdd:COG1196 688 -----LAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDL 762
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 968 ISLSKKnIEELTQANEALKEVN-------EALEQEKMNLLQKHEKITSCIAEQERSIAELsDQYKQERLQ 1030
Cdd:COG1196 763 EELERE-LERLEREIEALGPVNllaieeyEELEERYDFLSEQREDLEEARETLEEAIEEI-DRETRERFL 830
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1786-2528 |
1.57e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 77.03 E-value: 1.57e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1786 LLPEVEDWDKKVESLLNEIMEADSKLSLQEVQLKMKIATCIQLEKIVKDLRKEKADLSE--------KLESLPCNQEVCl 1857
Cdd:TIGR02169 228 LLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEeeqlrvkeKIGELEAEIASL- 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1858 rvERSEEDLGFNLDMGANELlskstkDNATNTEDNYKEKFLDMERELTRIKSEKANIEHHILSVETNLEVVQAEKLCLER 1937
Cdd:TIGR02169 307 --ERSIAEKERELEDAEERL------AKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDK 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1938 DTESKQKVIIDLKEELFTVISERNRLREELDNVSKESKALDQMSKKMKEKIEELESHQREslrhigaVESEVKDKADLIQ 2017
Cdd:TIGR02169 379 EFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINE-------LEEEKEDKALEIK 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2018 TLSFNVGELTKDKAHLQEQLQNLQNDSQELSLAIGELEIQIGQLNKEKESLVKESQNFQIKLTESECEKQTI-------- 2089
Cdd:TIGR02169 452 KQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVhgtvaqlg 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2090 ------SKALEVALKEKGEFAV--QLSSAQEEVHQLRRgiEKLS------VRIEADEKKHLSAVAK---------LKESQ 2146
Cdd:TIGR02169 532 svgeryATAIEVAAGNRLNNVVveDDAVAKEAIELLKR--RKAGratflpLNKMRDERRDLSILSEdgvigfavdLVEFD 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2147 RESDS-----LKDTVETLERELERSEENQ------------------------ELAILDSENLKAEVETLKAQKDEMTKS 2197
Cdd:TIGR02169 610 PKYEPafkyvFGDTLVVEDIEAARRLMGKyrmvtlegelfeksgamtggsrapRGGILFSRSEPAELQRLRERLEGLKRE 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2198 LRifelDLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQMEEDSKSamlmlqmQLKELREEVAalcN 2277
Cdd:TIGR02169 690 LS----SLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEE-------DLSSLEQEIE---N 755
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2278 DQETLKAQEQSLDQPGEEVHHLKSSIRKLKVHIDadEKKHQNILEQLKESKHHADLLKDRVENLEQELilseknmifqaE 2357
Cdd:TIGR02169 756 VKSELKELEARIEELEEDLHKLEEALNDLEARLS--HSRIPEIQAELSKLEEEVSRIEARLREIEQKL-----------N 822
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2358 KSKAEIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERVSDLE----TINSSIENLLKDKEQEKVQMKE-- 2431
Cdd:TIGR02169 823 RLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEaalrDLESRLGDLKKERDELEAQLREle 902
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2432 ----EAKITVEMLQTQLKELNETVVSLC-NDQEVSKTKEQNLGSQVQTLELEKAQL--------LQDLGEAKNKYIIFQS 2498
Cdd:TIGR02169 903 rkieELEAQIEKKRKRLSELKAKLEALEeELSEIEDPKGEDEEIPEEELSLEDVQAelqrveeeIRALEPVNMLAIQEYE 982
|
810 820 830
....*....|....*....|....*....|
gi 189458891 2499 SVNALTQEVEAGKQKLEKGEKEIRTLKEQL 2528
Cdd:TIGR02169 983 EVLKRLDELKEKRAKLEEERKAILERIEEY 1012
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1836-2418 |
6.98e-13 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 74.69 E-value: 6.98e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1836 RKEKADLSEKLESLPCN-QEVCLRVERSEEdlgfnldmgaNELLSKSTKDNATNTEDNYKEKfldmERELTRIKSEkani 1914
Cdd:PRK02224 198 EKEEKDLHERLNGLESElAELDEEIERYEE----------QREQARETRDEADEVLEEHEER----REELETLEAE---- 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1915 ehhilsvetnLEVVQAEKLCLERDTESKQKVIIDLKEELFTVISERNRLREELDNVSKESKALDQMSKKMKEKIEELESH 1994
Cdd:PRK02224 260 ----------IEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDR 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1995 QRESLRHIGAVESEvkdkadlIQTLSFNVGELTKDKAHLQEQLQNLQNDSQELSLAIGELEIQIGQLNKEKESLVKESQN 2074
Cdd:PRK02224 330 LEECRVAAQAHNEE-------AESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGD 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2075 FQIKLTESECEKQTISKALEVALKEKGEFAVQLSSAQEEVHQLRRgieklsvrieadekkhLSAVAKLKESQREsdslkd 2154
Cdd:PRK02224 403 APVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEA----------------LLEAGKCPECGQP------ 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2155 tVETLERELERSEENQELAILDSE--NLKAEVETLKAqKDEMTKSLRIFELDLVTVRTERENLAKQLQEKQSRVSELDER 2232
Cdd:PRK02224 461 -VEGSPHVETIEEDRERVEELEAEleDLEEEVEEVEE-RLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRER 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2233 CSSLRRLLEEKEQARVQMEEDSKSAMLmlqmQLKELREEVAALCNDQETLKAQEQSLdqpgEEVHHLKSSIRKLKVHIDA 2312
Cdd:PRK02224 539 AEELRERAAELEAEAEEKREAAAEAEE----EAEEAREEVAELNSKLAELKERIESL----ERIRTLLAAIADAEDEIER 610
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2313 DEKKHQNILEQLKESKHHADLLKDRVENLEQELilsEKNMI--FQAEKSKAE--IQTLKSEIQRMAQNLQDLQLELISTR 2388
Cdd:PRK02224 611 LREKREALAELNDERRERLAEKRERKRELEAEF---DEARIeeAREDKERAEeyLEQVEEKLDELREERDDLQAEIGAVE 687
|
570 580 590
....*....|....*....|....*....|....
gi 189458891 2389 SENENLmKELKKE----QERVSDLETINSSIENL 2418
Cdd:PRK02224 688 NELEEL-EELRERrealENRVEALEALYDEAEEL 720
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2023-2625 |
8.44e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.59 E-value: 8.44e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2023 VGELTKDKAHLQEQ------LQNLQNDSQELSLAIGELEIQigQLNKEKESLVKESQNFQIKLTESECEKQTISKALEVA 2096
Cdd:COG1196 195 LGELERQLEPLERQaekaerYRELKEELKELEAELLLLKLR--ELEAELEELEAELEELEAELEELEAELAELEAELEEL 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2097 LKEKGEFAVQLSSAQEEVHQLRRGIEKLSVRIEADEKKHLSAVAKLKESQRESDSLKDTVETLERELERSEENQELAILD 2176
Cdd:COG1196 273 RLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEE 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2177 SENLKAEVETLKAQKDEMTKSLRIFELDLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQMEEDSKS 2256
Cdd:COG1196 353 LEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2257 AMLMLQMQLKELREEVAALCNDQETLKAQEQSLDQPGEEVHHLKSSIRKLKVHIDADEKKHQNILEQLKESKHHADLLKD 2336
Cdd:COG1196 433 LEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKA 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2337 RVENLEQELILSEKNMIFQAEKSKAEIqtlksEIQRMAQNLQDLQLELISTRSENENLMKELKKeqERVSDLEtiNSSIE 2416
Cdd:COG1196 513 ALLLAGLRGLAGAVAVLIGVEAAYEAA-----LEAALAAALQNIVVEDDEVAAAAIEYLKAAKA--GRATFLP--LDKIR 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2417 NLLKDKEQEKVQMKEEAKITVEMLQTQLKELNETVVSLCNDQEVSKTKEQNLGSQVQTLELEKAQLLQDLGEAKNKYIIF 2496
Cdd:COG1196 584 ARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLT 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2497 QSSVNALTQEVEAGKQKLEKGEKEIRTLKEQLKSQEqlvckLAQVEGEQQLWQKQKLELRNVTMALEQKVQVLQSENNTL 2576
Cdd:COG1196 664 GGSRRELLAALLEAEAELEELAERLAEEELELEEAL-----LAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELL 738
|
570 580 590 600
....*....|....*....|....*....|....*....|....*....
gi 189458891 2577 QSTYEAlqnshkslESELGLIKLEKVALVERVSTISGKEAELQRELRDM 2625
Cdd:COG1196 739 EELLEE--------EELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1935-2535 |
2.03e-12 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 73.13 E-value: 2.03e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1935 LERDTESKQKVIIDLKEELFTVISERNRLREELDNVSKESKALDQMSKKMKEKIEELESHQREslrhigaVESEVKDKAD 2014
Cdd:TIGR04523 45 IKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSK-------INSEIKNDKE 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2015 LIQTLSFNVGELTKDKAHLQEQ-------LQNLQNDSQELSLAIGELEIQIGQLNKEKESLVKESQNFQIKLTESECE-- 2085
Cdd:TIGR04523 118 QKNKLEVELNKLEKQKKENKKNidkflteIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKll 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2086 -KQTISKALEVALKEKGEFAVQLSSAQEEVHQLRRGIEKLSVRIEADEKKHLSAVAKLKESQRESDSLKDTVETLERELE 2164
Cdd:TIGR04523 198 kLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELE 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2165 RSEENQELAILDSENLKAEVETLKAQKDEMTKSlrifeldlvTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKE 2244
Cdd:TIGR04523 278 QNNKKIKELEKQLNQLKSEISDLNNQKEQDWNK---------ELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLK 348
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2245 QARVQMEEDSKSamlmLQMQLKELREEVaalcndqETLKAQEQSLDQpgeEVHHLKSSIRKLKVHIDADEKKHQNILEQL 2324
Cdd:TIGR04523 349 KELTNSESENSE----KQRELEEKQNEI-------EKLKKENQSYKQ---EIKNLESQINDLESKIQNQEKLNQQKDEQI 414
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2325 KESKHHADLLKDRVENLEQELILSE-----------------KNMIFQAEKSKAEIQTLKSEIQRMAQNLQDLQLELIST 2387
Cdd:TIGR04523 415 KKLQQEKELLEKEIERLKETIIKNNseikdltnqdsvkeliiKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSK 494
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2388 RSENENLMKELKKEQERVSDLETINSS--------------IENLLKDKEQEKVQMKEEakITVEMLQTQLKELNETVVS 2453
Cdd:TIGR04523 495 EKELKKLNEEKKELEEKVKDLTKKISSlkekieklesekkeKESKISDLEDELNKDDFE--LKKENLEKEIDEKNKEIEE 572
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2454 LCNDQEVSKTKEqnlgSQVQTLELEKAQLLQDLGEAKNKYIIFQSSvnaLTQEVEAGKQKLEKGEKEIRTLKEQLKSQEQ 2533
Cdd:TIGR04523 573 LKQTQKSLKKKQ----EEKQELIDQKEKEKKDLIKEIEEKEKKISS---LEKELEKAKKENEKLSSIIKNIKSKKNKLKQ 645
|
..
gi 189458891 2534 LV 2535
Cdd:TIGR04523 646 EV 647
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1935-2533 |
3.13e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 72.79 E-value: 3.13e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1935 LERDTESKQKVIIDLKEELFTVISERNRLREELDNVSKESKALDqmskKMKEKIEELESHqreslrhigavesevkdkad 2014
Cdd:PRK03918 191 IEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELE----ELKEEIEELEKE-------------------- 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2015 liqtlsfnVGELTKDKAHLQEQLQNLQNDSQELSLAIGELEIQIGQLNkekeslvkesqnfqiKLTESECEKQTISKALE 2094
Cdd:PRK03918 247 --------LESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK---------------ELKEKAEEYIKLSEFYE 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2095 VALKEKGEFAVQLSSAQEEVHQLRRGIEKLsvriEADEKKHLSAVAKLKESQRESDSLKDTVET----LERELERSEENQ 2170
Cdd:PRK03918 304 EYLDELREIEKRLSRLEEEINGIEERIKEL----EEKEERLEELKKKLKELEKRLEELEERHELyeeaKAKKEELERLKK 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2171 ELAILDSENLKAEVETLKAQKDEMTKSLRifeldlvTVRTERENLAKQLQEKQSRVSELDE---RCSSLRRLLEEKEQAR 2247
Cdd:PRK03918 380 RLTGLTPEKLEKELEELEKAKEEIEEEIS-------KITARIGELKKEIKELKKAIEELKKakgKCPVCGRELTEEHRKE 452
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2248 VqMEEDSKsamlmlqmQLKELREEVAALCNDQETLKAQEQSLDQPGEEVHHLKSSIRKLKVHIDADEKKHQNILEQLKES 2327
Cdd:PRK03918 453 L-LEEYTA--------ELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKK 523
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2328 KHHADLLKDRVENLEQELILSEKNMifqaekskAEIQTLKSEIQRMAQNLQDLQLELISTRSENENL-MKELKKEQERVS 2406
Cdd:PRK03918 524 AEEYEKLKEKLIKLKGEIKSLKKEL--------EKLEELKKKLAELEKKLDELEEELAELLKELEELgFESVEELEERLK 595
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2407 DLETI-NSSIEnlLKDKEQEKVQMKEEAKITVEMLQTQLKELNETVVSLcndQEVSKTKEqnlgsqvqtlELEKAQLLQD 2485
Cdd:PRK03918 596 ELEPFyNEYLE--LKDAEKELEREEKELKKLEEELDKAFEELAETEKRL---EELRKELE----------ELEKKYSEEE 660
|
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 189458891 2486 LGEAKNKYIIFQSSVNALTQEVEAGKQKLEKGEKEIRTLKEQLKSQEQ 2533
Cdd:PRK03918 661 YEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREK 708
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2124-2705 |
8.55e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.51 E-value: 8.55e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2124 LSVRIEADEKKHLSAVAKLKESQRESDSLKDTVETLERELERSEENQELAILDSENLKAEVETLKAQKDEMTKSLRIFEL 2203
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2204 DLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQMEEDSKSAMLMLQMQLKELREEVAALCNDQETLK 2283
Cdd:COG1196 296 ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2284 AQEQSLDQpgeevhhlkssirkLKVHIDADEKKHQNILEQLKESKHHADLLKDRVENLEQELILSEKnmifQAEKSKAEI 2363
Cdd:COG1196 376 EAEEELEE--------------LAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEE----ALAELEEEE 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2364 QTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERVSDLETINSSIENLLKDKEQEKVQMKEEAKITVEMLQTQ 2443
Cdd:COG1196 438 EEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLA 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2444 LKELNETVVSLCNDQEVSKTK------EQNLGSQVQTLELEKAQLLQDLGEAKNKYIIFQSSVNALTQEVEAGKQKLEKG 2517
Cdd:COG1196 518 GLRGLAGAVAVLIGVEAAYEAaleaalAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAI 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2518 EKEIRTLKEQLKSQEQLVCKLAQVEGEQQLWQKQKLELRNVTMALEQKVQVLQSENNTLQSTYEALQNSHKSLESELGLI 2597
Cdd:COG1196 598 GAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEA 677
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2598 KLEKVALVERVSTISGKEAELQRELRDMLQKTTQLSEDYNKEKNRLTEEVEVLREELQNTKAAHLksvnQLEKELQRAQG 2677
Cdd:COG1196 678 EAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELL----EEEELLEEEAL 753
|
570 580
....*....|....*....|....*...
gi 189458891 2678 KIKLMLKSCRQLEGEKEMLQKELSQLEA 2705
Cdd:COG1196 754 EELPEPPDLEELERELERLEREIEALGP 781
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2186-2771 |
9.79e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.12 E-value: 9.79e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2186 TLKAQKDEMTKSLRIFELDLVtvRTERENLAKQLQEKQSRVSELDERcssLRRLLEEKEQARVQMEEdsksamlmLQMQL 2265
Cdd:COG1196 217 ELKEELKELEAELLLLKLREL--EAELEELEAELEELEAELEELEAE---LAELEAELEELRLELEE--------LELEL 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2266 KELREEVAALCNDQETLKAQEQSLDqpgEEVHHLKSSIRKLKVHIDADEKKHQNILEQLKESKHHADLLKDRVENLEQEL 2345
Cdd:COG1196 284 EEAQAEEYELLAELARLEQDIARLE---ERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2346 ILSEKnmifQAEKSKAEIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERVSDLETINSSIENLLKDKEQE 2425
Cdd:COG1196 361 AEAEE----ALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEE 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2426 KVQMKEEAKITVEMLQTQLKELNETVVSLCNDQEVSKTKEQNLGSQVQTLELEKAQL-----LQDLGEAKNKYIIFQSSV 2500
Cdd:COG1196 437 EEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLlllleAEADYEGFLEGVKAALLL 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2501 NALTQEVEAGKQKLEKGEKEIRTLKEQLKSQEQ-LVCKLAQVEGEQQLWQKQKLELRNVTMALEQKVQVLQSENNTLQST 2579
Cdd:COG1196 517 AGLRGLAGAVAVLIGVEAAYEAALEAALAAALQnIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGA 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2580 YEALQNSHKS-LESELGLIKLEKVALVERVSTISGKEA--ELQRELRDMLQKTTQLSEDYNKEKNRLTEEVEVLREELQN 2656
Cdd:COG1196 597 IGAAVDLVASdLREADARYYVLGDTLLGRTLVAARLEAalRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLE 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2657 TKAAHLKSVNQLEKELQRAQGKIKLMLKSCRQLEGEKEMLQKELSQLEAAQQQRAGSLVDSNVDEVMTENKALKETLEEK 2736
Cdd:COG1196 677 AEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEEL 756
|
570 580 590
....*....|....*....|....*....|....*
gi 189458891 2737 VKEADkyldkycsllisHEELEKAKEILEIEVARL 2771
Cdd:COG1196 757 PEPPD------------LEELERELERLEREIEAL 779
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
2178-2705 |
2.27e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 70.09 E-value: 2.27e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2178 ENLKAEVETLKAQKDEMTKSLRIFELDLVTVRTERE---NLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQMEEDS 2254
Cdd:PRK03918 224 EKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEkirELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYE 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2255 KsamlmLQMQLKELREEVAALCNDQETLKAQEQSLDQPGEEVHHLKSSIRKLKVHIDADEKKHQnILEQLKESKHHADLL 2334
Cdd:PRK03918 304 E-----YLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHE-LYEEAKAKKEELERL 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2335 KDRVENLEQELIlseKNMIFQAEKSKAEIQTLKSEIQRMAQNLQdlqleliSTRSENENLMKELKKEQER--VSDLETIN 2412
Cdd:PRK03918 378 KKRLTGLTPEKL---EKELEELEKAKEEIEEEISKITARIGELK-------KEIKELKKAIEELKKAKGKcpVCGRELTE 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2413 SSIENLLKDKEQEKVQMKEEAKITVEMLQTQLKELNETVVSLCNDQEVSKTKEqnLGSQVQTLELEKAQLlqDLGEAKNK 2492
Cdd:PRK03918 448 EHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKE--LAEQLKELEEKLKKY--NLEELEKK 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2493 YiifqssvnaltQEVEAGKQKLEKGEKEIRTLKEQLKSQEQLVCKLAQVEGEQQLWQKQKLELRNVTMALEQK-VQVLQS 2571
Cdd:PRK03918 524 A-----------EEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFEsVEELEE 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2572 ENNTLQSTYE---ALQNSHKSLESELGLIKLEKVALVERVSTISGKEAELqRELRDMLQkttQLSEDYNKEKNRLTEEVE 2648
Cdd:PRK03918 593 RLKELEPFYNeylELKDAEKELEREEKELKKLEEELDKAFEELAETEKRL-EELRKELE---ELEKKYSEEEYEELREEY 668
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 189458891 2649 VLREELQNTKAAHLKSVNQLEKELQRAQGKIKLMLKSCRQLEGEKEMLQKELSQLEA 2705
Cdd:PRK03918 669 LELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEE 725
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1925-2272 |
3.98e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 69.33 E-value: 3.98e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1925 LEVVQAEKLCLERDTESKQKVIIDLKEELFTVISERNRLREELDNVSKESKALDQMSKKMKEKIEELESHQRESLRHIGA 2004
Cdd:TIGR02169 676 LQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIEN 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2005 VESEVKDKADLIQTLSFNVGELTKDKAHL-----QEQLQNLQNDSQEL-------SLAIGELEIQIGQLNKEKESLVKES 2072
Cdd:TIGR02169 756 VKSELKELEARIEELEEDLHKLEEALNDLearlsHSRIPEIQAELSKLeeevsriEARLREIEQKLNRLTLEKEYLEKEI 835
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2073 QNFQIKLTESECEKQTISKALEVALKEKGEFAVQLSSAQEEVHQLRRGIEKLsvrieadEKKHLSAVAKLKESQRESDSL 2152
Cdd:TIGR02169 836 QELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDL-------KKERDELEAQLRELERKIEEL 908
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2153 KDTVETLERELERseenqelaildsenLKAEVETLKAQKDEMTKSLRIFELDLVTVRTErENLAKQLQEKQSRVSEL--- 2229
Cdd:TIGR02169 909 EAQIEKKRKRLSE--------------LKAKLEALEEELSEIEDPKGEDEEIPEEELSL-EDVQAELQRVEEEIRALepv 973
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 189458891 2230 -----DERCSSLRRLLEEKEQARVQMEEdsKSAMLMLQMQLKELREEV 2272
Cdd:TIGR02169 974 nmlaiQEYEEVLKRLDELKEKRAKLEEE--RKAILERIEEYEKKKREV 1019
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1883-2625 |
4.53e-11 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 68.99 E-value: 4.53e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1883 KDNATNTEDNYKEKFLDMERELTRI----KSEKANIEHHILSVETNLEVVQAEKLCLERDTESKQKVIIDLKEELFTVIS 1958
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQRRLNESnelhEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVH 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1959 ERNRLREELDNVSKESKA-LDQMSKKM---------------------KEKIEELESHQRESLRHIGAVESEVKDKADli 2016
Cdd:pfam15921 153 ELEAAKCLKEDMLEDSNTqIEQLRKMMlshegvlqeirsilvdfeeasGKKIYEHDSMSTMHFRSLGSAISKILRELD-- 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2017 QTLSFNVGELTKdkahLQEQLQNLQNDSQ-ELSLAIGELEIQIGQLNKEKESlvkESQNFQIKLTESECEKQTISKALEV 2095
Cdd:pfam15921 231 TEISYLKGRIFP----VEDQLEALKSESQnKIELLLQQHQDRIEQLISEHEV---EITGLTEKASSARSQANSIQSQLEI 303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2096 ----ALKEKGEFAVQLSSAQEEVHQLRRGIEKLSV----RIEADEKKHLSAVAKLKESQRESDSLkdtvetlerelerse 2167
Cdd:pfam15921 304 iqeqARNQNSMYMRQLSDLESTVSQLRSELREAKRmyedKIEELEKQLVLANSELTEARTERDQF--------------- 368
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2168 eNQELAILDSENLKAEVETLKAQKD---EMTKSLRIFELDLVTVRTeRENLAKQLQEKQSRVSELDERCSSLRRLLE--- 2241
Cdd:pfam15921 369 -SQESGNLDDQLQKLLADLHKREKElslEKEQNKRLWDRDTGNSIT-IDHLRRELDDRNMEVQRLEALLKAMKSECQgqm 446
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2242 EKEQARVQMEEDSKSAMLMLQMQLKELREEVAALCndqETLKAQEQSLDQPGEEVHHLKSSIRKLKVHIDADEKKHQNIL 2321
Cdd:pfam15921 447 ERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVV---EELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLR 523
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2322 EQLKESKHHADLLKDRVENLEQELILSEKNMIFQAEKSKAeIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKE 2401
Cdd:pfam15921 524 SRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKV-IEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDR 602
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2402 QERVSDLEtinssienLLKDKEQEKVQmKEEAKITvemlqtqlkelnetvvslcnDQEVSKTKEQNLGSQ----VQTLEL 2477
Cdd:pfam15921 603 RLELQEFK--------ILKDKKDAKIR-ELEARVS--------------------DLELEKVKLVNAGSErlraVKDIKQ 653
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2478 EKAQLLQDLGEAKNKyiifqssVNALTQEVEAGKQKLEKGEKEIRT----LKEQLKSQ----EQLVCKLAQVEGEQ---- 2545
Cdd:pfam15921 654 ERDQLLNEVKTSRNE-------LNSLSEDYEVLKRNFRNKSEEMETttnkLKMQLKSAqselEQTRNTLKSMEGSDgham 726
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2546 ---QLWQKQKLELRNVTMALEQKVQVLQSENNTLQSTYEALQNSHKSLESELGLIKLEKVALVERVSTISGKEAELQREL 2622
Cdd:pfam15921 727 kvaMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKV 806
|
...
gi 189458891 2623 RDM 2625
Cdd:pfam15921 807 ANM 809
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
275-1037 |
5.93e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.54 E-value: 5.93e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 275 QAKAQNQDLKSKMTELELRLQGQEKEMRSQVNKCQDLQLQLEKTKVELIEKERILNKTRDEVVRSTAQYDQAAAKCTTLE 354
Cdd:TIGR02168 250 EAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 355 QKLKTLTEELSCHRQNAESAKRSLEQrIKEKEKELQEELSRQHQSFQALDSEYTQMKTRLTQELQQVKHLHSTLQLELEK 434
Cdd:TIGR02168 330 SKLDELAEELAELEEKLEELKEELES-LEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEAR 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 435 VTSVKQQLERNLEEIRLKLSRA-EQALQASQVAENELRRSSEEMKKENSLIRSQSEQRTREVCHLEEELGKVKVSLSKSQ 513
Cdd:TIGR02168 409 LERLEDRRERLQQEIEELLKKLeEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQ 488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 514 NFAEemkakntsqeiMLRDLQEklNQQENSLTLEKLKLALADLERQRNCSQDLLKKREH-----------HIDQL-NNKL 581
Cdd:TIGR02168 489 ARLD-----------SLERLQE--NLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGyeaaieaalggRLQAVvVENL 555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 582 NKIEKEFETL------------LSALELKKKECEELKEEKNQISF--WKIDSEKLINQIESEKEILLGKInHLETSLKT- 646
Cdd:TIGR02168 556 NAAKKAIAFLkqnelgrvtflpLDSIKGTEIQGNDREILKNIEGFlgVAKDLVKFDPKLRKALSYLLGGV-LVVDDLDNa 634
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 647 --QQVSPDSNERIRTLE-------------------------MERENFTVEIKNLQSMLDSKMVEIKTQKQAYLELQQKS 699
Cdd:TIGR02168 635 leLAKKLRPGYRIVTLDgdlvrpggvitggsaktnssilerrREIEELEEKIEELEEKIAELEKALAELRKELEELEEEL 714
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 700 ESSDQKHQ---KEIENMCLKANKLTGQVESLECKLQLLSSEVVTKDQQYQDLRMEYETLRDLLKSRGSSLVTNEdnQRSS 776
Cdd:TIGR02168 715 EQLRKELEelsRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE--AQIE 792
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 777 EDNQRSSEDNQRGSLAFEQQPAVSDSFANVMGRKGSINSERSDCSVDGGRSPEHIAILQNRVTSLESSLESQNQMNSDLQ 856
Cdd:TIGR02168 793 QLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELE 872
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 857 MRCEELLQIKGEVEENLSKAEQIHQNFVAETNQCISKLQEdaavhqnivaetlatlesKEKELQLLKEKLEAQQTEVQKL 936
Cdd:TIGR02168 873 SELEALLNERASLEEALALLRSELEELSEELRELESKRSE------------------LRRELEELREKLAQLELRLEGL 934
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 937 NKNNCLLEGTLKEL-QLLSDTLSSEKKEMNSIISLSKKNIEELTQANEALKEVN-------EALEQEKMNLLQKHEKITS 1008
Cdd:TIGR02168 935 EVRIDNLQERLSEEySLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNlaaieeyEELKERYDFLTAQKEDLTE 1014
|
810 820
....*....|....*....|....*....
gi 189458891 1009 CIAEQERSIAELSDQYKQERLQLLQRCEE 1037
Cdd:TIGR02168 1015 AKETLEEAIEEIDREARERFKDTFDQVNE 1043
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
18-713 |
1.65e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.39 E-value: 1.65e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 18 QKIQELEGQLEKLKKEKQQRQFQLDSLEAALQKQKQKVEDGKTEGADLKRENQRLMEICEHLEKSRQKLSHELQVKESQV 97
Cdd:TIGR02168 295 NEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRL 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 98 NLQESQLSSCKKQIEKLEQELKRCKSEFERSQQVAQSADVSLNPCSTPQKlfatpltpsstyEDLKEKYNKEVEE-RKRL 176
Cdd:TIGR02168 375 EELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIE------------ELLKKLEEAELKElQAEL 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 177 EEEVKALHAKKVSLPVSQATMNHRDIARHQASSSVFPWQQENTPSRLSSDALKTpLRRDGSAAHFLGEEVSPNKSSMKTG 256
Cdd:TIGR02168 443 EELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLER-LQENLEGFSEGVKALLKNQSGLSGI 521
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 257 RGdcsslpgephsaQLLHQAKAQNQDLKSKMTELELRLQGQEKEMRSQVNKCQDLQLQLEKTKVELIE----KERILNKT 332
Cdd:TIGR02168 522 LG------------VLSELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPldsiKGTEIQGN 589
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 333 RDEVVRSTAQYDQAAAKCTTLEQKLKTLTEELSCHRQNAESAKRSLEQRIKEKEKEL---------------QEELSRQH 397
Cdd:TIGR02168 590 DREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRivtldgdlvrpggviTGGSAKTN 669
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 398 QSFQALDSEYTQMKTR----------LTQELQQVKHLHSTLQLELEKVTSVKQQLERNLEEIRLKLSRAEQALQASQVAE 467
Cdd:TIGR02168 670 SSILERRREIEELEEKieeleekiaeLEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERI 749
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 468 NELRRSSEEMKKENSLIRSQSEQRTREVCHLEEELGKVKVSLSKSQNFAEEMKAKNTSQEIMLRDLQEKLNQQENslTLE 547
Cdd:TIGR02168 750 AQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRE--RLE 827
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 548 KLKLALADLERQRNCSQDLLKKREHHIDQLNNKLNKIEKEFETLLSALELKKKECEELKEEKNQISFWKIDSEKLINQIE 627
Cdd:TIGR02168 828 SLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELE 907
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 628 SEKEILLGKINHLETSLKtqqvspDSNERIRTLEMERENFTVEIKNLQSMLdskMVEIKTQKQAYLELQQKSESSDQKHQ 707
Cdd:TIGR02168 908 SKRSELRRELEELREKLA------QLELRLEGLEVRIDNLQERLSEEYSLT---LEEAEALENKIEDDEEEARRRLKRLE 978
|
....*.
gi 189458891 708 KEIENM 713
Cdd:TIGR02168 979 NKIKEL 984
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
2282-2785 |
2.35e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 66.58 E-value: 2.35e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2282 LKAQEQSLDQPGEEVHHLKSSIRKLKVHIDADEKKHQNILEQLKESKHHADLLKDRVENLEQELILSE---KNMIFQAEK 2358
Cdd:TIGR04523 91 LKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNnkyNDLKKQKEE 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2359 SKAEIQTLKSEIQRMAQNLQDLQLELIS---TRSENENLMKELKKEQERVSDLETINSSIENLLKDKEQEKVQMKEEAKI 2435
Cdd:TIGR04523 171 LENELNLLEKEKLNIQKNIDKIKNKLLKlelLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISN 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2436 TVEMLQTQLKELNETVVSLCNDQ-EVSKTKE---------QNLGSQVQTLELEKAQ-----LLQDLGEAKNKYIIFQSSV 2500
Cdd:TIGR04523 251 TQTQLNQLKDEQNKIKKQLSEKQkELEQNNKkikelekqlNQLKSEISDLNNQKEQdwnkeLKSELKNQEKKLEEIQNQI 330
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2501 NALTQEVEAGKQKLEKGEKEIRTLK-EQLKSQEQLVCKLAQVEGEQQLWQKQKLELRNVTM---ALEQKVQVLQSENNTL 2576
Cdd:TIGR04523 331 SQNNKIISQLNEQISQLKKELTNSEsENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESqinDLESKIQNQEKLNQQK 410
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2577 QSTYEALQNSHKSLESELGLIKLEKVALVERVSTISGKEAELQRELRDMLQKTTQ-------LSEDYNKEKNRLTEEVEV 2649
Cdd:TIGR04523 411 DEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESletqlkvLSRSINKIKQNLEQKQKE 490
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2650 LREELQNTKAahLKSVN-QLEKELQRAQGKIKLMLKSCRQLEGEKEMLQKELSQLEAaqqqragslvDSNVDEVMTENKA 2728
Cdd:TIGR04523 491 LKSKEKELKK--LNEEKkELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLED----------ELNKDDFELKKEN 558
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 189458891 2729 LKETLEEKVKEADKYLDKYCSLLISHEELEKAKEILEIEVARLKSRQSRQDLQSSPL 2785
Cdd:TIGR04523 559 LEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSL 615
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
2228-2772 |
2.62e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 66.63 E-value: 2.62e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2228 ELDERCSSLRRLLEEKEQARVQMEEDSKSAMLMLQmQLKELREEVAALCNDQETLKAQEQSLDQPGEEVHHLKSSIRKLK 2307
Cdd:PRK03918 173 EIKRRIERLEKFIKRTENIEELIKEKEKELEEVLR-EINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2308 VHIDADEKKHQNILEQLKESKHHADLLKDRVENLEQ-----ELILSEKNMIFQAEKSKAEIQTLKSEIQRMAQNLQDLQL 2382
Cdd:PRK03918 252 GSKRKLEEKIRELEERIEELKKEIEELEEKVKELKElkekaEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIK 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2383 ELISTRSENENLMKELKKEQERVSDLETINSSIENLLKDKEQEKVQMKEEAKITVEMLQTQLKELNETVVSLCNDQEVSK 2462
Cdd:PRK03918 332 ELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKIT 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2463 TKEQNLGSQVQTL-----ELEKAQLL----------QDLGEAKNKYIIFQSSVNALTQEVEAGKQKLEKGEKEIRTL--- 2524
Cdd:PRK03918 412 ARIGELKKEIKELkkaieELKKAKGKcpvcgrelteEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVlkk 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2525 KEQLKSQEQLVCKLAQVEGEQQLWQKQKLELRNVTM-ALEQKVQVLQSENNTLQSTYEALqnshKSLESELGLIKLEKVA 2603
Cdd:PRK03918 492 ESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYeKLKEKLIKLKGEIKSLKKELEKL----EELKKKLAELEKKLDE 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2604 LVERVSTISGKEAELQRELRDMLQKTTQLSEDYNKEKNRLTEEVEVLREElqntkaahLKSVNQLEKELQRAQGKIKLML 2683
Cdd:PRK03918 568 LEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELERE--------EKELKKLEEELDKAFEELAETE 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2684 KSCRQLEGEKEMLQKELSQLEAAQQQRAGSLVDSNVDEVMTEnkalKETLEEKVKEADKYLDKYCSLLISHEELEKAKEI 2763
Cdd:PRK03918 640 KRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAE----LEELEKRREEIKKTLEKLKEELEEREKAKKELEK 715
|
....*....
gi 189458891 2764 LEIEVARLK 2772
Cdd:PRK03918 716 LEKALERVE 724
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1550-2248 |
2.75e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.62 E-value: 2.75e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1550 VEGLEVLCQVYLQSLKNLE---EKTESQRIMKNKEIEKLEQLLSSERKELSCLRKQYLSEKEQwQQKLTSVTLEMESKLA 1626
Cdd:TIGR02168 297 ISRLEQQKQILRERLANLErqlEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAE-LEELEAELEELESRLE 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1627 EekQQTKTLSLELEVARLQLQELDLSSR-SLLGTDLESVVRCQNDNYDIKESEvyiSETTEKTPKQDTDQTCDKDIQqdl 1705
Cdd:TIGR02168 376 E--LEEQLETLRSKVAQLELQIASLNNEiERLEARLERLEDRRERLQQEIEEL---LKKLEEAELKELQAELEELEE--- 447
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1706 GLETSVTESETTRLTGEGCEEQppktncEAPAEDKTQDCSECISELCSSSNVLVPMD--VLEDQGSIQNLQLQKDTLNEN 1783
Cdd:TIGR02168 448 ELEELQEELERLEEALEELREE------LEEAEQALDAAERELAQLQARLDSLERLQenLEGFSEGVKALLKNQSGLSGI 521
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1784 LRLLPEV----EDWDKKVESLLNEIMEA------DSKLSLQEVQLKMKIATCIQLEKIVKDLRKEKADLSEKLESLPCNQ 1853
Cdd:TIGR02168 522 LGVLSELisvdEGYEAAIEAALGGRLQAvvvenlNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFL 601
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1854 EVCLRVERSEEDLGFNLDMGANELLSKSTKDNATNTEDNYKEKFLDMERELTRIKSE------KANIEHHILSVETNLEV 1927
Cdd:TIGR02168 602 GVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGgvitggSAKTNSSILERRREIEE 681
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1928 VQAEKLCLERDTESKQKVIIDLKEELFTVISERNRLREELDNVSKESKALDQMSKKMKEKIEELESHQRESLRHIGAVES 2007
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA 761
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2008 EVKDKADLIQTLSFNVGELTKDKAHLQEQLQNLQNDSQELSLAIGELEIQIGQLNkekeslvKESQNFQIKLTESECEKQ 2087
Cdd:TIGR02168 762 EIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLN-------EEAANLRERLESLERRIA 834
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2088 TISKALEVALKEKGEFAVQLSSAQEEVHQLRRGIEKLSVRIEADEKKHLSAVAKLKESQRESDSLKDTVetlerelerse 2167
Cdd:TIGR02168 835 ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEEL----------- 903
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2168 enqelaildsENLKAEVETLKAQKDEMTKSLRIFELDLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQAR 2247
Cdd:TIGR02168 904 ----------RELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRR 973
|
.
gi 189458891 2248 V 2248
Cdd:TIGR02168 974 L 974
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1794-2124 |
5.05e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.85 E-value: 5.05e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1794 DKKVESLLNEIMEADSKLSLQEVQLKMKIATCIQLEKIVKDLRKEKADLSEKLESLpcnQEVCLRVERSEEDLGFNLDMG 1873
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISAL---RKDLARLEAEVEQLEERIAQL 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1874 ANELLskstkdnatntedNYKEKFLDMERELTRIKSEKANIEHHILSVETNLEVVQAEKLCLERDTESKQKVIIDLKEEL 1953
Cdd:TIGR02168 753 SKELT-------------ELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEA 819
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1954 FTVISERNRLREELDNVSKESKALDQMSKKMKEKIEELESHQRESLRHIGAVESEVKDKADLIQTLSFNVGELTKDKAHL 2033
Cdd:TIGR02168 820 ANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEEL 899
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2034 QEQLQNLQNDSQELSLAIGELEIQIGQLNKEKESLVKESQNFQIKLTESEcekqtiSKALEVALKEKGEFAVQLSSAQEE 2113
Cdd:TIGR02168 900 SEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEY------SLTLEEAEALENKIEDDEEEARRR 973
|
330
....*....|.
gi 189458891 2114 VHQLRRGIEKL 2124
Cdd:TIGR02168 974 LKRLENKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1592-2341 |
1.39e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 1.39e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1592 ERKELSCLRKQYLSEKEQWQQKLTSVTlEMESKLAEEKQQTKTLSLELEVARLQLQELDLSSRSLLGT---------DLE 1662
Cdd:TIGR02168 223 RELELALLVLRLEELREELEELQEELK-EAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKElyalaneisRLE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1663 SVVRCQNDNydIKESEVYISETTEKTPKQDTDQTCDKDIQQDLGLETSVTESETTRLTGEGCEEQPPKTNCEAPAEDKTQ 1742
Cdd:TIGR02168 302 QQKQILRER--LANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1743 dcseciselcsssnvlvpmDVLEDQGSIQNLQLQKDTLNENL-RLLPEVEDWDKKVESLLNEIMEADSKlsLQEVQLKMK 1821
Cdd:TIGR02168 380 -------------------QLETLRSKVAQLELQIASLNNEIeRLEARLERLEDRRERLQQEIEELLKK--LEEAELKEL 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1822 IATCIQLEKIVKDLRKEKADLSEKLESLpcnqevclrvERSEEDLGFNLDMGANELLSKSTKDNATNTEDNYKEKFLDME 1901
Cdd:TIGR02168 439 QAELEELEEELEELQEELERLEEALEEL----------REELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGV 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1902 RELTRIKSEKANIEHHILSV-------ETNLEVVQAE---KLCLERDTESKQKVIIDLKEELFTV--------------I 1957
Cdd:TIGR02168 509 KALLKNQSGLSGILGVLSELisvdegyEAAIEAALGGrlqAVVVENLNAAKKAIAFLKQNELGRVtflpldsikgteiqG 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1958 SERNRLREELDNVS----------KESKALD----------------QMSKKMKEKiEELESHQRESLRHIGAVESEVKD 2011
Cdd:TIGR02168 589 NDREILKNIEGFLGvakdlvkfdpKLRKALSyllggvlvvddldnalELAKKLRPG-YRIVTLDGDLVRPGGVITGGSAK 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2012 KADLIQTLSFNVGELTKDKAHLQEQLQNLQNDSQELSLAIGELEIQIGQLNKEKESLVKESQNFQIKLTESECEKQTISK 2091
Cdd:TIGR02168 668 TNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE 747
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2092 ALEVALKEKGEFAVQLSSAQEEVHQLRRGIEKLSVRIEADEKKHLSAVAKLKESQRESDSLKDTVETLERELERSEENQE 2171
Cdd:TIGR02168 748 RIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLE 827
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2172 LAILDSENLKAEVETLKAQKDEMTKSLRIFELDLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQME 2251
Cdd:TIGR02168 828 SLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELE 907
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2252 EdsksAMLMLQMQLKELREEVAALCNDQETLKAQEQsldqpgeevhHLKSSIR-KLKVHIDADEKKHQNILEQLKESKHH 2330
Cdd:TIGR02168 908 S----KRSELRRELEELREKLAQLELRLEGLEVRID----------NLQERLSeEYSLTLEEAEALENKIEDDEEEARRR 973
|
810
....*....|.
gi 189458891 2331 ADLLKDRVENL 2341
Cdd:TIGR02168 974 LKRLENKIKEL 984
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
273-1127 |
1.52e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.93 E-value: 1.52e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 273 LHQAKAQNQDLKSKMTELELRLQGQEKEmRSQVNKCQDLQLQLEKTKVELIEKEriLNKTRDEVVRSTAQYDqaaakctT 352
Cdd:TIGR02169 179 LEEVEENIERLDLIIDEKRQQLERLRRE-REKAERYQALLKEKREYEGYELLKE--KEALERQKEAIERQLA-------S 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 353 LEQKLKTLTEELSCHRQNAESAKRSLEQ---RIKEKEKELQEELSRQHQSFQALDSEYTQMKTRLTQELQQVKHLHSTLQ 429
Cdd:TIGR02169 249 LEEELEKLTEEISELEKRLEEIEQLLEElnkKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLE 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 430 LELEKVTSVKQQLERNLEEIRLKLSRAEQALQASQVAENELRRSSEEMKKENSLIRSQSEQRTREVCHLEEELGKVKVSL 509
Cdd:TIGR02169 329 AEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKREL 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 510 SKSQNFAEEMKAKNTSQEIMLRDLQEKLNQQENslTLEKLKLALADLERQRNCSQDLLKKREHHIDQLNNKLNKIEKEfe 589
Cdd:TIGR02169 409 DRLQEELQRLSEELADLNAAIAGIEAKINELEE--EKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKE-- 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 590 tlLSALELKKKECEELKEEKNQISFWKIDSEKLINqieSEKEILLGKINHLetslktQQVSPDSNERIRTLEMERENFTV 669
Cdd:TIGR02169 485 --LSKLQRELAEAEAQARASEERVRGGRAVEEVLK---ASIQGVHGTVAQL------GSVGERYATAIEVAAGNRLNNVV 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 670 ---------EIKNLQSMLDSKMVEIKTQKQAYLELQQKSESSDQ---------KHQKEIENMCLKANKLTGQVESLECKL 731
Cdd:TIGR02169 554 veddavakeAIELLKRRKAGRATFLPLNKMRDERRDLSILSEDGvigfavdlvEFDPKYEPAFKYVFGDTLVVEDIEAAR 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 732 QLLSsevvtkdqQYQDLRMEYETLRD-------LLKSRGSSLVTNEDNQRSSEDNQR-----------SSEDNQRGSLAF 793
Cdd:TIGR02169 634 RLMG--------KYRMVTLEGELFEKsgamtggSRAPRGGILFSRSEPAELQRLRERleglkrelsslQSELRRIENRLD 705
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 794 EQQPAVSDSfanvMGRKGSINSERSDCSVDGGRSPEHIAILQNRVTSLESSLESQNQMNSDLQMRCEELLQIKGEVEENL 873
Cdd:TIGR02169 706 ELSQELSDA----SRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEAL 781
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 874 SKAEQ-IHQNFVAETNQCISKLQEdaaVHQNIVAeTLATLESKEKELQLLKEkleaqqtevqklnknncLLEGTLKELQL 952
Cdd:TIGR02169 782 NDLEArLSHSRIPEIQAELSKLEE---EVSRIEA-RLREIEQKLNRLTLEKE-----------------YLEKEIQELQE 840
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 953 LSDTLSSEKKEMNSIISLSKKNIEELTQANEALKEVNEALEQEKMNLLQKHEKITSCIAEQERSIAELSDQYKQERLQLL 1032
Cdd:TIGR02169 841 QRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLS 920
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1033 QRCEETEAVLEDLRGNYKTAQENNAKLECMLSECT--ALCENRKNELEQLKETFAKEQQEF-LTKLAFAEEQNRKLMLEL 1109
Cdd:TIGR02169 921 ELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDvqAELQRVEEEIRALEPVNMLAIQEYeEVLKRLDELKEKRAKLEE 1000
|
890
....*....|....*...
gi 189458891 1110 EIEQQTVRSEITNTNKHS 1127
Cdd:TIGR02169 1001 ERKAILERIEEYEKKKRE 1018
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
2028-2778 |
5.74e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 62.06 E-value: 5.74e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2028 KDKAHLQEQLQNLQNDSQELSLAIGELEIQIGQLNKEKESLVKESQNFQIKLTESECEKQTIskalevalkekgefavqL 2107
Cdd:pfam15921 103 KQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDM-----------------L 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2108 SSAQEEVHQLRrgieKLSVRIEADEKKHLSAVAKLKESQRESDSLKDTVETLERELERSEENQELAILDSE--NLKAEVE 2185
Cdd:pfam15921 166 EDSNTQIEQLR----KMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRSLGSAISKILRELDTEisYLKGRIF 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2186 TLKAQKdEMTKSLRIFELDLVtVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQMEEDSKSAMLMLQMQL 2265
Cdd:pfam15921 242 PVEDQL-EALKSESQNKIELL-LQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQL 319
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2266 KELREEVAALCND-QETLKAQEQSLDQPGEEVHHLKSSIRKLKVHIDADEKKHQNILEQLKesKHHADLLKDRVE-NLEQ 2343
Cdd:pfam15921 320 SDLESTVSQLRSElREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQ--KLLADLHKREKElSLEK 397
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2344 ElilSEKNMIFQAEKSKAEIQTLKSEIQRMAQNLQDLQLELISTRSENENLM-KELKKEQERVSDLETINSSIENLLKDK 2422
Cdd:pfam15921 398 E---QNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMeRQMAAIQGKNESLEKVSSLTAQLESTK 474
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2423 EQEKVQMKE--EAKITVEMLQTQLKELNETVVSLCNDQEVSKTKEQNLGSQVQtLELEKAQLLQDLGEaknkyiifqsSV 2500
Cdd:pfam15921 475 EMLRKVVEEltAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVD-LKLQELQHLKNEGD----------HL 543
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2501 NALTQEVEAGKQKLEKGEKEIRTLKEQLKSQEQLVCKLAQVEGEQQLWQKQklelrnvtmaLEQKVQVLQSENNTLQSTY 2580
Cdd:pfam15921 544 RNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQ----------LEKEINDRRLELQEFKILK 613
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2581 EALQNSHKSLESELGLIKLEKVALVERVStisgkeaELQRELRDMLQKTTQLSEDYN---KEKNRLTEEVEVLREELQNT 2657
Cdd:pfam15921 614 DKKDAKIRELEARVSDLELEKVKLVNAGS-------ERLRAVKDIKQERDQLLNEVKtsrNELNSLSEDYEVLKRNFRNK 686
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2658 KAAHLKSVNQLEKELQRAQGKIKLMLKSCRQLEGEKEMLQKelsqlEAAQQQRAGSLVDSNVDEVMTENKALKETLEEKV 2737
Cdd:pfam15921 687 SEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMK-----VAMGMQKQITAKRGQIDALQSKIQFLEEAMTNAN 761
|
730 740 750 760
....*....|....*....|....*....|....*....|...
gi 189458891 2738 KEAD--KYLDKYCSLLISHEELEKAKEILEIEVARLKSRQSRQ 2778
Cdd:pfam15921 762 KEKHflKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKE 804
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1795-2446 |
6.70e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 62.00 E-value: 6.70e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1795 KKVESLLNEIMEADSKLSLQEVQLKMKIAT----CIQLEKIVKDLRKEKADLSEKLEslpcnqEVCLRVERSEEdlgfnl 1870
Cdd:PRK03918 168 GEVIKEIKRRIERLEKFIKRTENIEELIKEkekeLEEVLREINEISSELPELREELE------KLEKEVKELEE------ 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1871 dmganellskstkdnatntednYKEKFLDMERELTRIKSEKANIEHHILSVETNLEVVQAEklclERDTESKQKVIIDLK 1950
Cdd:PRK03918 236 ----------------------LKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKE----IEELEEKVKELKELK 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1951 ---EELFTVISERNRLREELDNVSKESKALDQMSKKMKEKIEELESHQREsLRHIGAVESEVKDKADLIQTLSfnvgELT 2027
Cdd:PRK03918 290 ekaEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEER-LEELKKKLKELEKRLEELEERH----ELY 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2028 KDKAHLQEQLQNLQNDSQELSlaIGELEIQIGQLNKEKESLVKESQNFQIKLTESECEKQTISKALEVALKEKGEFAVQL 2107
Cdd:PRK03918 365 EEAKAKKEELERLKKRLTGLT--PEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCG 442
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2108 SSAQEEvHQLRRgIEKLSVRIEADEKKHLSAVAKLKESQRESDSLKDTVETLERELERSEENQELAILDSENLKAEVETL 2187
Cdd:PRK03918 443 RELTEE-HRKEL-LEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEEL 520
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2188 KAQKDEMTKSLRifelDLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQMEEDSKSAMLMLQMQLKE 2267
Cdd:PRK03918 521 EKKAEEYEKLKE----KLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKE 596
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2268 LREevaaLCNDQETLKAQEQSLDQPGEEVHHLKSSIRKLKVHIDADEKKHQNILEQLKESKHHADllKDRVENLEQELIL 2347
Cdd:PRK03918 597 LEP----FYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYS--EEEYEELREEYLE 670
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2348 SEKNMifqaEKSKAEIQTLKSEIQRMAQNLQDLQLEListrsenenlmKELKKEQERVSDLETINSSIENLLKDKEQEKV 2427
Cdd:PRK03918 671 LSREL----AGLRAELEELEKRREEIKKTLEKLKEEL-----------EEREKAKKELEKLEKALERVEELREKVKKYKA 735
|
650
....*....|....*....
gi 189458891 2428 QMKEEAKITVEMLQTQLKE 2446
Cdd:PRK03918 736 LLKERALSKVGEIASEIFE 754
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1914-2519 |
7.20e-09 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 61.84 E-value: 7.20e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1914 IEHHILSVE-----TNLEVVQAEKLCLERDTESKQKVIIDLKEELFTVISERNRLREELDNVSKESKALDQMSKKMKEKI 1988
Cdd:PRK01156 117 IEKNILGISkdvflNSIFVGQGEMDSLISGDPAQRKKILDEILEINSLERNYDKLKDVIDMLRAEISNIDYLEEKLKSSN 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1989 EELESHQREslrhIGAVESEVKDKADLIQTLSFNVGELTKDKAHLQEQLQNLQNDSQElslaIGELEIQIGQLNKEKESL 2068
Cdd:PRK01156 197 LELENIKKQ----IADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDM----KNRYESEIKTAESDLSME 268
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2069 VKESqnfqIKLTESECEKQTISKALEVALKEKGEFAVQLSSAQEEVHQLRRGIEKLSVRIEADEKKhLSAVAKLKESQRE 2148
Cdd:PRK01156 269 LEKN----NYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILSNIDAEINKYHAIIKK-LSVLQKDYNDYIK 343
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2149 SDSLKDTVETLERELERSEENQELAILDSENLKAEVE----TLKAQKDEMTKSLRIFELDLVTVRTERENLAKQLQEKQS 2224
Cdd:PRK01156 344 KKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEeyskNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISS 423
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2225 RVSELDERCSSLRRLLEEKEQARVQME---------------------EDSKSAMLMLQMQLKELREEVAALCNDQETLK 2283
Cdd:PRK01156 424 KVSSLNQRIRALRENLDELSRNMEMLNgqsvcpvcgttlgeeksnhiiNHYNEKKSRLEEKIREIEIEVKDIDEKIVDLK 503
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2284 AQEQSLDqpGEEVHHLKSSIRKLKvHIDADEKKHQNILEQLKESKHHADLLKDRVENLEQElILSEKNMIF---QAEKSK 2360
Cdd:PRK01156 504 KRKEYLE--SEEINKSINEYNKIE-SARADLEDIKIKINELKDKHDKYEEIKNRYKSLKLE-DLDSKRTSWlnaLAVISL 579
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2361 AEIQTLKSEIQRMAQNLQDLQlelistrsenenlmkelKKEQERVSDLETINSSIENLLKDKEQE------KVQMKEEAK 2434
Cdd:PRK01156 580 IDIETNRSRSNEIKKQLNDLE-----------------SRLQEIEIGFPDDKSYIDKSIREIENEannlnnKYNEIQENK 642
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2435 ITVEMLQTQLKELNETVV---SLCNDQEVSKTKEQNLGSQVQTLELEKAQLLQDLGEAKNKYIIFQSSVNALTQEVEAGK 2511
Cdd:PRK01156 643 ILIEKLRGKIDNYKKQIAeidSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDIN 722
|
....*...
gi 189458891 2512 QKLEKGEK 2519
Cdd:PRK01156 723 ETLESMKK 730
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
15-594 |
7.44e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.00 E-value: 7.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 15 RALQKIQELEGQLEKLKKEKQQRQFQLDSLEAALQKQKQKVEDGKTEGADLKRENQRLMEICEHLEKSRQKLSHELQVKE 94
Cdd:TIGR02168 313 NLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLE 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 95 SQVNLQESQLSSCKKQIEKLEQELKRCKSEFERSQQVAQSADVSL--NPCSTPQKLFATPLTPSSTYEDLKEKYNKEVEE 172
Cdd:TIGR02168 393 LQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKElqAELEELEEELEELQEELERLEEALEELREELEE 472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 173 RKRLEEEVKALHAKKVSLPVSQATM------NHRDIARHQASSSVFP------WQQENTPSRLSS--------------- 225
Cdd:TIGR02168 473 AEQALDAAERELAQLQARLDSLERLqenlegFSEGVKALLKNQSGLSgilgvlSELISVDEGYEAaieaalggrlqavvv 552
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 226 -------DALKTPLRRDGSAAHFLGEEVSPNKSSMKTGRGDCSSLPGEPHSAQLLHQAKAQNQDLKSKM-------TELE 291
Cdd:TIGR02168 553 enlnaakKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLlggvlvvDDLD 632
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 292 --LRLQGQEKEMRS-------QVNKCQDLQLQLEKTKVELIEKERILNKTRDEVVRSTAQYDQAAAKCTTLEQKLKTLTE 362
Cdd:TIGR02168 633 naLELAKKLRPGYRivtldgdLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEE 712
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 363 ELSCHRQNAESAKRSLEQRIKEKEKELQEELSRQHQ--SFQALDSEYTQMKTRLTQELQQVKHLHSTLQLELEKVTSVKQ 440
Cdd:TIGR02168 713 ELEQLRKELEELSRQISALRKDLARLEAEVEQLEERiaQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIE 792
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 441 QLERNLEEIRLKLSRAEQALQASQVAENELRRSSEEMKKENSLIRSQSEQRTREVCHLEEELGKVKVSLSKSQNFAEEMK 520
Cdd:TIGR02168 793 QLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELE 872
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 189458891 521 AKNTSQEIMLRDLQEKLNQQENSltLEKLKLALADLERQRNCSQDLLKKREHHIDQLNNKLNKIEKEFETLLSA 594
Cdd:TIGR02168 873 SELEALLNERASLEEALALLRSE--LEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQER 944
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2468-2787 |
7.44e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.88 E-value: 7.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2468 LGSQVQTLEL--EKAQLLQDLGEAKNKYiifqssvnaltqEVEAGKQKLEKGEKEIRTLKEQLKSQEQlvcKLAQVEGEQ 2545
Cdd:COG1196 198 LERQLEPLERqaEKAERYRELKEELKEL------------EAELLLLKLRELEAELEELEAELEELEA---ELEELEAEL 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2546 QLWQKQKLELRNVTMALEQKVQVLQSENNTLQSTYEALQNSHKSLESELGLIKLEKVALVERVSTISGKEAELQRELRDM 2625
Cdd:COG1196 263 AELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEEL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2626 LQKTTQLSEDYNKEKNRLTEEVEVLREELQNTKAAhLKSVNQLEKELQRAQGKIKLMLKSCRQLEGEKEMLQKELSQLEA 2705
Cdd:COG1196 343 EEELEEAEEELEEAEAELAEAEEALLEAEAELAEA-EEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEE 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2706 AQQQRAgslvdSNVDEVMTENKALKETLEEKVKEADKYLDKYCSLLISHEELEKAKEILEIEVARLKSRQSRQDLQSSPL 2785
Cdd:COG1196 422 ELEELE-----EALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLL 496
|
..
gi 189458891 2786 LN 2787
Cdd:COG1196 497 LE 498
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1789-2451 |
1.43e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 60.80 E-value: 1.43e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1789 EVEDWDKKVESLLNEIMEADSKLSLQEVQLKMKIATCIQLEKIVKDLRKEKADLSEKLeslpcnqevcLRVERSEEDLGF 1868
Cdd:TIGR04523 34 EEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKL----------KKNKDKINKLNS 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1869 NLDMGANELLSKSTKDNATNTE-DNYKEKFLDMERELTRIKSEKANIEHHILSVETNLEVVQAEKLCLERDTESKQKVII 1947
Cdd:TIGR04523 104 DLSKINSEIKNDKEQKNKLEVElNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKL 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1948 DLKEELFTVISERNRLREELDNVskesKALDQMSKKMKEKIEELESHQRESLRHIGAVESEVKDKADLIQTLSFNVGELT 2027
Cdd:TIGR04523 184 NIQKNIDKIKNKLLKLELLLSNL----KKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLK 259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2028 KDKAHLQEQLQNLQNDSQELSLAIGELEIQIGQLNKEKESLVKESQNFQIKLTESECEKQTiskalevalKEKGEFAVQL 2107
Cdd:TIGR04523 260 DEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQE---------KKLEEIQNQI 330
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2108 SSAQEEVHQLRRGIEKLSVRIEADEKKHLSAVAKLKESQREsdslkdtVETLERELERSEENQELAILDSENLKAEVETL 2187
Cdd:TIGR04523 331 SQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNE-------IEKLKKENQSYKQEIKNLESQINDLESKIQNQ 403
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2188 KAQKDEMTKSLRIFELDLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQMEEDSKSAMLMLQMQLKE 2267
Cdd:TIGR04523 404 EKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQN 483
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2268 LREEVAALCNDQETLKAQEQSLDQPGEEVHHLKSSIRKLKVHIDADEKKHQNILEQLKESKHHADLLKDRVENLEQELIL 2347
Cdd:TIGR04523 484 LEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEI 563
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2348 SEKNMifQAEKSKAEIQTLKS---EIQRMAQNLQDLQLELISTRSENE----NLMKELKKEQERVSDLETINSSIENLLK 2420
Cdd:TIGR04523 564 DEKNK--EIEELKQTQKSLKKkqeEKQELIDQKEKEKKDLIKEIEEKEkkisSLEKELEKAKKENEKLSSIIKNIKSKKN 641
|
650 660 670
....*....|....*....|....*....|.
gi 189458891 2421 DKEQEKVQMKEEAKITVEMLQTQLKELNETV 2451
Cdd:TIGR04523 642 KLKQEVKQIKETIKEIRNKWPEIIKKIKESK 672
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
281-559 |
1.65e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.72 E-value: 1.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 281 QDLKSKMTELE-----LRLQGQEKEMRSQVNKCQDLQLQLEKTKVELIEKERILNKTRDEVVRSTAQYDQAAAKCTTLEQ 355
Cdd:COG1196 216 RELKEELKELEaelllLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 356 KLKTLTEELSCHRQNAESAKRSLEQrikekEKELQEELSRQHQSFQALDSEYTQMKTRLTQELQQVKHLHSTLQLELEKV 435
Cdd:COG1196 296 ELARLEQDIARLEERRRELEERLEE-----LEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 436 TSVKQQLERNLEEIRLKLSRAEQALQASQVAENELRRSSEEMKKENSLIRSQSEQRTREVCHLEEELGKVKVSLSKSQNF 515
Cdd:COG1196 371 EAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE 450
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 189458891 516 AEEMKAKNTSQEIMLRDLQEKLNQQENSLTLEKLKLALADLERQ 559
Cdd:COG1196 451 EAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL 494
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
22-731 |
1.98e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.46 E-value: 1.98e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 22 ELEGQLEKLKKEKQQRQ------FQLDSLEAALQKQKQKvedgktegaDLKRENQRLMEICEHLEKSRQKLSHELQVKES 95
Cdd:TIGR02168 197 ELERQLKSLERQAEKAErykelkAELRELELALLVLRLE---------ELREELEELQEELKEAEEELEELTAELQELEE 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 96 QVNLQESQLSSCKKQIEKLEQELKRCKSEFERSQQVAQSADVSL-NPCSTPQKLFATPLTPSSTYEDLKEKYNKEVEERK 174
Cdd:TIGR02168 268 KLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLaNLERQLEELEAQLEELESKLDELAEELAELEEKLE 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 175 RLEEEVKALHAK----KVSLPVSQATMNHRDIARHQASSSVFPWQQE-----NTPSRLSSDALKTPLRRDGSAAHFLGEE 245
Cdd:TIGR02168 348 ELKEELESLEAEleelEAELEELESRLEELEEQLETLRSKVAQLELQiaslnNEIERLEARLERLEDRRERLQQEIEELL 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 246 VSPNKSSMKTGRGDCSSLPGEPHSAQL----LHQAKAQNQDLKSKMTELELRLQGQEKEMRSQVNKCQDLQLQLE---KT 318
Cdd:TIGR02168 428 KKLEEAELKELQAELEELEEELEELQEelerLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEgfsEG 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 319 KVELIEKERILNKTRD---EVVRSTAQYDQAAAkcTTLEQKL-KTLTEELSCHRQNAESAKRSLEQR--------IKEKE 386
Cdd:TIGR02168 508 VKALLKNQSGLSGILGvlsELISVDEGYEAAIE--AALGGRLqAVVVENLNAAKKAIAFLKQNELGRvtflpldsIKGTE 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 387 KELQEELSRQHQSFQ---ALDSEYTQMK---------------TRLTQELQQVKHLHS-----TLQLEL----------- 432
Cdd:TIGR02168 586 IQGNDREILKNIEGFlgvAKDLVKFDPKlrkalsyllggvlvvDDLDNALELAKKLRPgyrivTLDGDLvrpggvitggs 665
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 433 EKVTSVKQQLERNLEEIRLKLSRAEQALQASQVAENELRRSSEEMKKENSLIRSQSEQRTREVCHLEEELGKVKvslSKS 512
Cdd:TIGR02168 666 AKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLE---AEV 742
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 513 QNFAEEMkaknTSQEIMLRDLQEKLNQQEnsLTLEKLKLALADLERQRncsqdllKKREHHIDQLNNKLNKIEKEFETLL 592
Cdd:TIGR02168 743 EQLEERI----AQLSKELTELEAEIEELE--ERLEEAEEELAEAEAEI-------EELEAQIEQLKEELKALREALDELR 809
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 593 SALELKKKECEELKEEKNQISFWKIDSEKLINQIESEKEILLGKINHLETSLKTQQVSPD-SNERIRTLEMERENFTVEI 671
Cdd:TIGR02168 810 AELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEeLESELEALLNERASLEEAL 889
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 672 KNLQSMLDSKMVEIKTQKQAYLELQQKSESSdqkhQKEIENMCLKANKLTGQVESLECKL 731
Cdd:TIGR02168 890 ALLRSELEELSEELRELESKRSELRRELEEL----REKLAQLELRLEGLEVRIDNLQERL 945
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1957-2781 |
2.21e-08 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 60.45 E-value: 2.21e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1957 ISERNRLREELDNV---SKESKALDQMSKKMKEKIEELESHQRES--LRHIGAVESEVKDKADLIQTLSFNVGELTKDKA 2031
Cdd:TIGR00606 165 LSEGKALKQKFDEIfsaTRYIKALETLRQVRQTQGQKVQEHQMELkyLKQYKEKACEIRDQITSKEAQLESSREIVKSYE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2032 HLQEQLQNLQNDSQELSLAIGELEIQIGQLNKEKESLVKESQNFQIKLTE----SECEKQTISKALEVALKEKGEFAVQL 2107
Cdd:TIGR00606 245 NELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKvfqgTDEQLNDLYHNHQRTVREKERELVDC 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2108 SSAQEEVHQLRRGIEKLSVRIEADEKKHLSAVAKLKESQRESDSLKDTVETLERELE-RSEENQELAILDSENLKAEVET 2186
Cdd:TIGR00606 325 QRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGfERGPFSERQIKNFHTLVIERQE 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2187 LKA----------QKDEMTKSLRIFELDL------VTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQM 2250
Cdd:TIGR00606 405 DEAktaaqlcadlQSKERLKQEQADEIRDekkglgRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAE 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2251 EEDSKsamLMLQMQLKELREEVAALCNDQETLKAQEQSLDQPGEEVHHLKSSIRKLKVHIDADEKKHQNILeqlKESKHH 2330
Cdd:TIGR00606 485 RELSK---AEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIR---KIKSRH 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2331 ADLLKDRVENLEQELILSEKnmifqaekskaeIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERVSDLE- 2409
Cdd:TIGR00606 559 SDELTSLLGYFPNKKQLEDW------------LHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEd 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2410 ---------TINSSIENLLKDKEQEKVQMKEEAKITVEMLQ--TQLKELNETVVSLCNDQEVSKTKEQNLGSQVQTLELE 2478
Cdd:TIGR00606 627 klfdvcgsqDEESDLERLKEEIEKSSKQRAMLAGATAVYSQfiTQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRL 706
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2479 KAQLLQDLGEAKNKyiiFQSSVNALTQEVEAGKQKLEKGEKEIRTLKEQLKSQEQLVCKLAQVEGEQQlwqkqklELRNV 2558
Cdd:TIGR00606 707 APDKLKSTESELKK---KEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQE-------TLLGT 776
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2559 TMALEQKVQVLQSENNTLQSTYEALQNSHKSLESELGliKLEKVALVERVSTISGKEAELQRELRDMLQKtTQLSEDYNK 2638
Cdd:TIGR00606 777 IMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAA--KLQGSDLDRTVQQVNQEKQEKQHELDTVVSK-IELNRKLIQ 853
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2639 EKNRLTEEVEVLREELQNTKAAHLKSVNQLEKELQRAQGKIKLMLKSCRQLEGEKEMLQKELSQLEAAQQQRAGSLVDSN 2718
Cdd:TIGR00606 854 DQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKE 933
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 189458891 2719 VDEVMTENKA--LKETLEEKV---KEADKYLDKYCSLLISHEELEKAKEILEIEVARLKSRQSRQDLQ 2781
Cdd:TIGR00606 934 TSNKKAQDKVndIKEKVKNIHgymKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMR 1001
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2352-2594 |
2.48e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 59.01 E-value: 2.48e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2352 MIFQAEKSKAEIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERVSDLETINSSIENLLKDKEQEKVQMKE 2431
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2432 EAKITVEMLQTQLKELNETVVSLcndqevsktkeQNLGSQVQTLELEKAqllQDLGEAKNKYIIFQSSVNALTQEVEAGK 2511
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRAL-----------YRLGRQPPLALLLSP---EDFLDAVRRLQYLKYLAPARREQAEELR 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2512 QKLEKGEKEIRTLKEQLKSQEQLvckLAQVEGEQQLWQKQKLELRNVTMALEQKVQVLQSENNTLQSTYEALQNSHKSLE 2591
Cdd:COG4942 157 ADLAELAALRAELEAERAELEAL---LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLE 233
|
...
gi 189458891 2592 SEL 2594
Cdd:COG4942 234 AEA 236
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
403-1007 |
2.77e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 59.65 E-value: 2.77e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 403 LDSEYTQMKTRLTQELQQVKHLHSTLQLELEKVTSVKQQLERNLEEIrlklSRAEQalQASQVAENELRRSSEEMKKENS 482
Cdd:TIGR04523 80 LEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVEL----NKLEK--QKKENKKNIDKFLTEIKKKEKE 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 483 LIRSQSEQRT--REVCHLEEELGKVKVSLSKSQNFAEEMKAKNTSQEIMLRDLQEKlNQQENSLTLEklklaLADLERQR 560
Cdd:TIGR04523 154 LEKLNNKYNDlkKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKK-IQKNKSLESQ-----ISELKKQN 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 561 NCSQDLLKKREHHIDQLNNKLNKIEKEFETLLSALELKKKECEELKEEKNQISFWKIDSEKLINQIESEKEILLGK---- 636
Cdd:TIGR04523 228 NQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQkeqd 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 637 -INHLETSLKTQQVSPD--------SNERIRTLEMERENFTVEIKNLQSMLDSKMVEIKTQKQAYlelqQKSESSDQKHQ 707
Cdd:TIGR04523 308 wNKELKSELKNQEKKLEeiqnqisqNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEI----EKLKKENQSYK 383
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 708 KEIENMCLKANKLTGQVESLECKLQLLSSEVVTKDQQYQDLRMEYETLRDLlKSRGSSLVTNEDNQRSSEDNQRSSEDNQ 787
Cdd:TIGR04523 384 QEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKET-IIKNNSEIKDLTNQDSVKELIIKNLDNT 462
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 788 RGSLafEQQPAVSdsfanvmgrKGSINSERSDcsvdggrspehIAILQNRVTSLESSLESQNQMNSDLQMRCEELLQIKG 867
Cdd:TIGR04523 463 RESL--ETQLKVL---------SRSINKIKQN-----------LEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKIS 520
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 868 EVEENLSKAEqihqNFVAETNQCISKLQEDaavhqnivaetLATLESKEKELQLLKEKLEAQQtEVQKLNKNNCLLEGTL 947
Cdd:TIGR04523 521 SLKEKIEKLE----SEKKEKESKISDLEDE-----------LNKDDFELKKENLEKEIDEKNK-EIEELKQTQKSLKKKQ 584
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 948 KELQLLSDTLSSEKKEMNSIISLSKKNIEELTQANEALKEVNEALEQEKMNLLQKHEKIT 1007
Cdd:TIGR04523 585 EEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLK 644
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
290-569 |
3.05e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.57 E-value: 3.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 290 LELRLQGQEKEMRSQVNKCQDLQLQLEKTKVELIEKERILNKTRDEVVRSTAQYDQAAAKCTTLEQKLKTLTEELSCHRQ 369
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 370 ---NAESAKRSLEQRIKEKEKELQEELSRQHQSFQALDSEYTQMKtRLTQELQQVKHLHSTLQLELEKVTSVKQQLERNL 446
Cdd:COG1196 296 elaRLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELE-ELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 447 EEIRLKLSRAEQALQASQVAENELRRSSEEMKKENSLIRSQSEQRTREVCHLEEELGKVKVSLSKSQNFAEEMKAKNTSQ 526
Cdd:COG1196 375 AEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL 454
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 189458891 527 EIMLRDLQEKLNQQENSLTLEKLKLALADLERQRNCSQDLLKK 569
Cdd:COG1196 455 EEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLL 497
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
270-537 |
4.03e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.18 E-value: 4.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 270 AQLLHQAKAQNQDLKSKMTELELRLQGQEKEMRSQVNKCQDLQLQLEKTKVELIEKERILNKTRDEVVRSTAQYDQAAAK 349
Cdd:COG1196 252 EAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEE 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 350 CTTLEQKLKTLTEELschrQNAESAKRSLEQRIKEKEKELQEELSRQHQSFQALDSEYTQMKTRLTQELQQVKHLHSTLQ 429
Cdd:COG1196 332 LEELEEELEELEEEL----EEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEE 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 430 LElekvtsvkQQLERNLEEIRLKLSRAEQALQASQVAENELRRSSEEMKKENSLIRSQSEQRTREVCHLEEELGKVKVSL 509
Cdd:COG1196 408 AE--------EALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAAL 479
|
250 260
....*....|....*....|....*...
gi 189458891 510 SKSQNFAEEMKAKNTSQEIMLRDLQEKL 537
Cdd:COG1196 480 AELLEELAEAAARLLLLLEAEADYEGFL 507
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
2141-2763 |
4.34e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 58.88 E-value: 4.34e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2141 KLKESQRESDSLKDTVETLERELERSEENQELAILDSENLKAEVETLKAQKDEMTKSLRIFELDLVTVRTERENLAKQLQ 2220
Cdd:TIGR04523 34 EEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIK 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2221 EKQSRVSELDERCSSLRRLLEE--KEQARVQMEEDSKSAML-MLQMQLKELREEVAALCNDQETLKAQEQSLDQPGEEVH 2297
Cdd:TIGR04523 114 NDKEQKNKLEVELNKLEKQKKEnkKNIDKFLTEIKKKEKELeKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIK 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2298 HLKSSIRKLKVHIDADEKKHQNILEQLKESKHHADLLKDRVENLEQELilSEKNMIFQaeKSKAEIQTLKSEIQRMAQNL 2377
Cdd:TIGR04523 194 NKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEI--NEKTTEIS--NTQTQLNQLKDEQNKIKKQL 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2378 QDLQLELISTRSENENLMKELKKEQERVSDLE---------TINSSIENLLKDKEQEKVQMKEEAKI------TVEMLQT 2442
Cdd:TIGR04523 270 SEKQKELEQNNKKIKELEKQLNQLKSEISDLNnqkeqdwnkELKSELKNQEKKLEEIQNQISQNNKIisqlneQISQLKK 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2443 QLKELNETVVSLCNDQEVSKTKEQNLGSQVQTLELEKAQLLQDLGEAKNKYIIFQSSVNALTQEVEAGKQKLEKGEKEIR 2522
Cdd:TIGR04523 350 ELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIE 429
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2523 TLKEQLKSQEQLVCKLAQVEGEQQLWQKqklELRNVTMALEQKVQVLQSENNTLQSTYEALQNSHKSLESELGLIKLEK- 2601
Cdd:TIGR04523 430 RLKETIIKNNSEIKDLTNQDSVKELIIK---NLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKk 506
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2602 ------VALVERVSTISGKEAELQRELRDMLQKTTQLSEDYNKEKNRLTEEVEVLREELQNTKAAHLKSVNqleKELQRA 2675
Cdd:TIGR04523 507 eleekvKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQ---KSLKKK 583
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2676 QGKIKLMLKscrQLEGEKEMLQKELSQLEAAQQQragslVDSNVDEVMTENKALkETLEEKVKEADKYLDKYCSLLisHE 2755
Cdd:TIGR04523 584 QEEKQELID---QKEKEKKDLIKEIEEKEKKISS-----LEKELEKAKKENEKL-SSIIKNIKSKKNKLKQEVKQI--KE 652
|
....*...
gi 189458891 2756 ELEKAKEI 2763
Cdd:TIGR04523 653 TIKEIRNK 660
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2118-2432 |
6.26e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.93 E-value: 6.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2118 RRGIEKLSVRIEADEKKHlSAVAKLKESQRESDSLKDTVEtlerelersEENQELAILDSENLKAE-VETLKAQKDE--- 2193
Cdd:TIGR02169 156 RKIIDEIAGVAEFDRKKE-KALEELEEVEENIERLDLIID---------EKRQQLERLRREREKAErYQALLKEKREyeg 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2194 --MTKSLRIFELDLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQarvQMEEDSKSAMLMLQMQLKELREE 2271
Cdd:TIGR02169 226 yeLLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNK---KIKDLGEEEQLRVKEKIGELEAE 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2272 VAaLCNDQETLKAQEQ-----SLDQPGEEVHHLKSSIRKLKVHIDADEKKHQNILEQLKESKHHADLLKDRVENLEQEL- 2345
Cdd:TIGR02169 303 IA-SLERSIAEKERELedaeeRLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFa 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2346 ILSEKNMIFQAEKSKA---------EIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERVSDLETINSSIE 2416
Cdd:TIGR02169 382 ETRDELKDYREKLEKLkreinelkrELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLA 461
|
330
....*....|....*.
gi 189458891 2417 NLLKDKEQEKVQMKEE 2432
Cdd:TIGR02169 462 ADLSKYEQELYDLKEE 477
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1958-2762 |
8.92e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 58.44 E-value: 8.92e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1958 SERNRLREELdNVSKESKALDQMSKKMKEKIEELESHQRESLRHIGAVESEVKDKADL-----IQTLSFNVGELTKDKAH 2032
Cdd:pfam02463 153 ERRLEIEEEA-AGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKAleyyqLKEKLELEEEYLLYLDY 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2033 LQEQLQNLQNDSQELSLAIGELEIQIGQLNKEKESL------------VKESQNFQIKLTESECEKQTISKALEVALKEK 2100
Cdd:pfam02463 232 LKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLaqvlkenkeeekEKKLQEEELKLLAKEEEELKSELLKLERRKVD 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2101 GEFAVQLSSAQEEVHQ----------LRRGIEKLSVRI----EADEKKHLSAVAKLKESQRESDSLKDTVETLERELERS 2166
Cdd:pfam02463 312 DEEKLKESEKEKKKAEkelkkekeeiEELEKELKELEIkreaEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAK 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2167 EENQELAILDSENLKAEVETLKAQKDEMTKSLRIFELDLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQA 2246
Cdd:pfam02463 392 LKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSE 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2247 RVQMEEDSKSAMLMLQMQLKE--LREEVAALCNDQETLKAQEQSLDQPGEEVHHLKSSIRKLKVHIDADEKKHQNILEQL 2324
Cdd:pfam02463 472 DLLKETQLVKLQEQLELLLSRqkLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIV 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2325 KESKHHADLLKDRVENLEQELILSEKN-MIFQAEKSKAEIQTLKSEIQRMAQNLQDLQLELISTRSEN--ENLMKELKKE 2401
Cdd:pfam02463 552 EVSATADEVEERQKLVRALTELPLGARkLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDkrAKVVEGILKD 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2402 QERVSDLETINSSIENLLKDKEQEKVQMKEEAKITVEMLQTQLKELNETVVSLCNDQEVSKTKEQNLGSQVQTLELEKAQ 2481
Cdd:pfam02463 632 TELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEE 711
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2482 LLQDLGEAKNKYIIFQSSV--------NALTQEVEAGKQKLEKGEKEiRTLKEQLKSQEQLVCKLAQVEGEQQLWQKQKL 2553
Cdd:pfam02463 712 LKKLKLEAEELLADRVQEAqdkineelKLLKQKIDEEEEEEEKSRLK-KEEKEEEKSELSLKEKELAEEREKTEKLKVEE 790
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2554 ELRNVTMALEQKVQVLQSENNTLQSTYEALQNSHKSLESELGLiKLEKVALVERVSTISGKEAELQRELRDMLQKTTQLs 2633
Cdd:pfam02463 791 EKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEE-ELEELALELKEEQKLEKLAEEELERLEEEITKEEL- 868
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2634 edynKEKNRLTEEVEVLREELQNTKAAHLKSVNQLEKELQRAQ---------GKIKLMLKSCRQLEGEKEMLQKELSQLE 2704
Cdd:pfam02463 869 ----LQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQklnlleekeNEIEERIKEEAEILLKYEEEPEELLLEE 944
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*...
gi 189458891 2705 AAQQQRAGSLVDSNVDEVMTENKALKETLEEKVKEADKYLDKYCSLLISHEELEKAKE 2762
Cdd:pfam02463 945 ADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEE 1002
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
2177-2734 |
9.94e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 58.13 E-value: 9.94e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2177 SENLKAEVETLKAQKDEMTKSLRIFELDLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQMEE---- 2252
Cdd:PRK02224 201 EKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREElaee 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2253 --DSKSAMLMLQMQLKELREEVAALCNDQETLKAQEQSLDQPGEEvhhLKSSIRKLKVHIDADEKKHQNILEQLKESKHH 2330
Cdd:PRK02224 281 vrDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEE---LRDRLEECRVAAQAHNEEAESLREDADDLEER 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2331 ADLLKDRVENLEQELILSEKnmifQAEKSKAEIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERVSDLET 2410
Cdd:PRK02224 358 AEELREEAAELESELEEARE----AVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEA 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2411 INSSIENLLKDKEqekvQMKEEAKITVemlQTQLKELNETVVSLCNDQEvsktkeqnlgsQVQTLELEKAQLlqdlgeak 2490
Cdd:PRK02224 434 TLRTARERVEEAE----ALLEAGKCPE---CGQPVEGSPHVETIEEDRE-----------RVEELEAELEDL-------- 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2491 nkyiifQSSVNALTQEVEAGKQkLEKGEKEIRTLKEQLKSQEQLVCKLAQVEGEQQLwqkQKLELRNVTMALEQKVQVLQ 2570
Cdd:PRK02224 488 ------EEEVEEVEERLERAED-LVEAEDRIERLEERREDLEELIAERRETIEEKRE---RAEELRERAAELEAEAEEKR 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2571 SENNTLQSTYEALQNSHKSLESELGLIKLEKVALvERVSTISGKEAELQRELRDMLQKTTQLSEDYNKEKNRLTEEVEVL 2650
Cdd:PRK02224 558 EAAAEAEEEAEEAREEVAELNSKLAELKERIESL-ERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERK 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2651 REELQNTKAAhlkSVNQLEKELQRAQGKIKLMLKSCRQLEGEKEMLQKELSQLEAAQQQRagslvdsnvDEVMTENKALK 2730
Cdd:PRK02224 637 RELEAEFDEA---RIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEEL---------EELRERREALE 704
|
....
gi 189458891 2731 ETLE 2734
Cdd:PRK02224 705 NRVE 708
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2468-2775 |
1.02e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.14 E-value: 1.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2468 LGSQVQTLEL--EKAQLLQDLGEAK---------NKYIIFQSSVNALTQEVEAGKQKLEKGEKEIRTLKEQLksqEQLVC 2536
Cdd:TIGR02168 198 LERQLKSLERqaEKAERYKELKAELrelelallvLRLEELREELEELQEELKEAEEELEELTAELQELEEKL---EELRL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2537 KLAQVEGEQQLWQKQKLELRNVTMALEQKVQVLQSENNTLQSTYEALQNSHKSLESELGLIKLEKVALVERVSTI----- 2611
Cdd:TIGR02168 275 EVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELkeele 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2612 --SGKEAELQRELRDMLQKTTQLSEDYNKEKNRLteevevlreelqntkAAHLKSVNQLEKELQRaqgkiklmlkscrqL 2689
Cdd:TIGR02168 355 slEAELEELEAELEELESRLEELEEQLETLRSKV---------------AQLELQIASLNNEIER--------------L 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2690 EGEKEMLQKELSQLEAAQQQRAGSLVDSNVDEVMTENKALKETLEEKVKEADKYLDKYCSLLISHEELEKAKEILEIEVA 2769
Cdd:TIGR02168 406 EARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELA 485
|
....*.
gi 189458891 2770 RLKSRQ 2775
Cdd:TIGR02168 486 QLQARL 491
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
311-495 |
1.11e-07 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 57.72 E-value: 1.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 311 LQLQLEKTKVELIEKERILNKTRDE--VVRSTAQYDQAAAKCTTLEQKLKTLTEELschrQNAESAKRSLEQRIKEKEKE 388
Cdd:COG3206 180 LEEQLPELRKELEEAEAALEEFRQKngLVDLSEEAKLLLQQLSELESQLAEARAEL----AEAEARLAALRAQLGSGPDA 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 389 LQEELsrQHQSFQALDSEYTQMKTRLTQELQQVKHLHSTLQLELEKVTSVKQQLERNLEEIrlkLSRAEQALQASQVAEN 468
Cdd:COG3206 256 LPELL--QSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRI---LASLEAELEALQAREA 330
|
170 180 190
....*....|....*....|....*....|
gi 189458891 469 ELRRSSEEMKKE-NSLIRSQSEQR--TREV 495
Cdd:COG3206 331 SLQAQLAQLEARlAELPELEAELRrlEREV 360
|
|
| Macoilin |
pfam09726 |
Macoilin family; The Macoilin proteins has an N-terminal portion that is composed of 5 ... |
353-584 |
1.84e-07 |
|
Macoilin family; The Macoilin proteins has an N-terminal portion that is composed of 5 trasnmembrane helices, followed by a C-terminal coiled-coil region. Macoilin is a highly conserved protein present in eukaryotes. Macoilin appears to be found in the ER and be involved in the function of neurons.
Pssm-ID: 462859 [Multi-domain] Cd Length: 670 Bit Score: 56.78 E-value: 1.84e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 353 LEQKLKTLTEELSCHRQNaesaKRSLEQRIKEKEKELQEELSrqhqSFQALDSEYTQMKTRL-------TQELQQVKHLH 425
Cdd:pfam09726 400 LEQDIKKLKAELQASRQT----EQELRSQISSLTSLERSLKS----ELGQLRQENDLLQTKLhnavsakQKDKQTVQQLE 471
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 426 STLQLELEKVTSVKQQLErnlEEIRLKLSRAEQALQASQVAENELRRSSEEMKKENSLIRSQSEQRTREVCHLEEELGKV 505
Cdd:pfam09726 472 KRLKAEQEARASAEKQLA---EEKKRKKEEEATAARAVALAAASRGECTESLKQRKRELESEIKKLTHDIKLKEEQIREL 548
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 506 KVslsKSQNFAEEMKAKNTSQEIM--LRDLQEKLNQQENSLTLE-KLKL----ALADLERQRNCSQDLLKKREHHIDQLN 578
Cdd:pfam09726 549 EI---KVQELRKYKESEKDTEVLMsaLSAMQDKNQHLENSLSAEtRIKLdlfsALGDAKRQLEIAQGQIYQKDQEIKDLK 625
|
....*.
gi 189458891 579 NKLNKI 584
Cdd:pfam09726 626 QKIAEV 631
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
546-1307 |
4.54e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.83 E-value: 4.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 546 LEKLKLALADLERQRNCSQDLLKK----REHHIDQLNNKLNKIEKEFETLLSALELKKKECEELKEEKNQisfwkidSEK 621
Cdd:TIGR02168 195 LNELERQLKSLERQAEKAERYKELkaelRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQE-------LEE 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 622 LINQIESEKEILLGKINHLETSLKtqqvspDSNERIRTLEMERENFTVEIKNLQSMLDSKMVEIKTQKQAYLELQQKSES 701
Cdd:TIGR02168 268 KLEELRLEVSELEEEIEELQKELY------ALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 702 SdqkhQKEIENMCLKANKLTGQVESLECKLQLLSSEVVTKDQQYQDLRMEYETLRDLLKSRGSSLVTNEDNQRSSEDNQR 781
Cdd:TIGR02168 342 L----EEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRE 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 782 SSEDNQRGSLAFEQQPAVSDSFANVMGRKGSIN---SERSDCSVDGGRSPEHIAILQNRVTSLESSLESQNQMNSDLQMR 858
Cdd:TIGR02168 418 RLQQEIEELLKKLEEAELKELQAELEELEEELEelqEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERL 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 859 CEELLQIKGEVEENLSKAEQIHQ---------NFVAETNQCISK-LQEDAavhQNIVAEtlaTLESKEKELQLLKEK--- 925
Cdd:TIGR02168 498 QENLEGFSEGVKALLKNQSGLSGilgvlseliSVDEGYEAAIEAaLGGRL---QAVVVE---NLNAAKKAIAFLKQNelg 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 926 ----LEAQQTEVQKLNKNNCL----LEGTLKELQLLSDTLSSEKKEMNSIISLSKKnIEELTQANEALKEVNEA-----L 992
Cdd:TIGR02168 572 rvtfLPLDSIKGTEIQGNDREilknIEGFLGVAKDLVKFDPKLRKALSYLLGGVLV-VDDLDNALELAKKLRPGyrivtL 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 993 EQEKMN----LLQKHEKITSCIAEQERSIAELSdqykQERLQLLQRCEETEAVLEDLRGNYKTAQENNAKLECMLSECTA 1068
Cdd:TIGR02168 651 DGDLVRpggvITGGSAKTNSSILERRREIEELE----EKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSR 726
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1069 LCENRKNELEQLKETFAKEQQEFltklafaeEQNRKLMLELEIEQQTVRSEITNTNKHSMSATDGLRQECLTLNEEQNEQ 1148
Cdd:TIGR02168 727 QISALRKDLARLEAEVEQLEERI--------AQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEEL 798
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1149 QNEVSNLTHENEQLMELTQTKHDSYLAVEPVENSVKATEDEIGKSSSQyqmdIDTKDISLDSYKAQLVHLEALVRILEVQ 1228
Cdd:TIGR02168 799 KALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQ----IEELSEDIESLAAEIEELEELIEELESE 874
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 189458891 1229 LDQSEEENKKLHLELQTIREELETKSSQdpqsqartglkdCDTAEEKYVSMLQELSASQNENAHLQCSLQTAVNKLNEL 1307
Cdd:TIGR02168 875 LEALLNERASLEEALALLRSELEELSEE------------LRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNL 941
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
893-1189 |
6.65e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.33 E-value: 6.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 893 KLQEDAAVHQNIVAetLATLESKEKELQLLKEKLEAQQTEVQKLNKNNCLLEGTLKELQLLSDTLSSEKKEMNSIISLSK 972
Cdd:COG1196 217 ELKEELKELEAELL--LLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 973 KNIEELTQANEALKEVNEALEQEKMNLLQKHEKITSCIAEQERSIAELsdqyKQERLQLLQRCEETEAVLEDLRGNYKTA 1052
Cdd:COG1196 295 AELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEEL----EEELEEAEEELEEAEAELAEAEEALLEA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1053 QENNAKLEcmlsecTALCENRKNELEQLKETFAKEQQEFLTKLAFAEEQNRKLMLELEIEQQTVRSEITNTNKHSMSATD 1132
Cdd:COG1196 371 EAELAEAE------EELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEAL 444
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 189458891 1133 G-LRQECLTLNEEQNEQQNEVSNLTHENEQLMELTQTKHDSYLAVEPVENSVKATEDE 1189
Cdd:COG1196 445 EeAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEAD 502
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1888-2481 |
9.52e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.15 E-value: 9.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1888 NTEDNYKEKFLDMERELTRIKSEKANIEHHILSVETNLEVVQAEKLcleRDTESKQKVIIDLK--------EELFTVISE 1959
Cdd:PTZ00121 1250 NNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEA---KKAEEKKKADEAKKkaeeakkaDEAKKKAEE 1326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1960 RNRLREELDNVSKESKALDQMSKKMKEKIEELESHQRESLRHIGAVESEVKDKADLIqtlsfnvgeltKDKAHLQEQLQN 2039
Cdd:PTZ00121 1327 AKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAA-----------KKKAEEKKKADE 1395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2040 LQNDSQElslaigeleiqigqlNKEKESLVKESQNFQIKLTESECEKQTISKALEvaLKEKGEFAVQLSSAQEEVHQLRR 2119
Cdd:PTZ00121 1396 AKKKAEE---------------DKKKADELKKAAAAKKKADEAKKKAEEKKKADE--AKKKAEEAKKADEAKKKAEEAKK 1458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2120 GIEklsVRIEADEKKHLSAVAKLKESQRESDSLKDTVETLERELERSEENQELAILDSENLKAEV-----ETLKAQK--- 2191
Cdd:PTZ00121 1459 AEE---AKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEakkadEAKKAEEakk 1535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2192 -DEMTKSLRIFELDLVTvRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQMEEDSKSAMLMLQMQLKELRE 2270
Cdd:PTZ00121 1536 aDEAKKAEEKKKADELK-KAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKK 1614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2271 EVAALCNDQETLKAQE------QSLDQPGEEV---HHLKSSIRKLKVHIDADEKKHQNILEQLKESKHHADLLKDRVENL 2341
Cdd:PTZ00121 1615 AEEAKIKAEELKKAEEekkkveQLKKKEAEEKkkaEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEAL 1694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2342 EQEliLSEKNMIFQAEKSKAEiQTLKSEIQRMAQNLQDLQLELISTRSENENL-MKELKKEQ-----------ERVSDLE 2409
Cdd:PTZ00121 1695 KKE--AEEAKKAEELKKKEAE-EKKKAEELKKAEEENKIKAEEAKKEAEEDKKkAEEAKKDEeekkkiahlkkEEEKKAE 1771
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2410 TINSSIENLLK---DKEQEKVQMKEEAKI-----TVEMLQTQLKElNETVVSLCNDQEVSKTKEQNLGSQVQTLELEKAQ 2481
Cdd:PTZ00121 1772 EIRKEKEAVIEeelDEEDEKRRMEVDKKIkdifdNFANIIEGGKE-GNLVINDSKEMEDSAIKEVADSKNMQLEEADAFE 1850
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
2357-2776 |
2.14e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.53 E-value: 2.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2357 EKSKAEIQTLKSEIQRMAQNLQDLqlelISTRSENENLMKELKKEQERVsdLETINSsIENLLKDKEqEKVQMKEEAKIT 2436
Cdd:PRK03918 161 ENAYKNLGEVIKEIKRRIERLEKF----IKRTENIEELIKEKEKELEEV--LREINE-ISSELPELR-EELEKLEKEVKE 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2437 VEMLQTQLKELNETVVSLCNDQEVSKTKEQNLGSQVQTLEL------EKAQLLQDLGEAKNKYIIFQSSVNALTQEVEAG 2510
Cdd:PRK03918 233 LEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKeieeleEKVKELKELKEKAEEYIKLSEFYEEYLDELREI 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2511 KQKLEKGEKEIRTLKEQLKSQEQLVCKLAQVEGEQQLWQKQKLELRNVTMALEqKVQVLQSENNTLQSTYEALqnSHKSL 2590
Cdd:PRK03918 313 EKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYE-EAKAKKEELERLKKRLTGL--TPEKL 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2591 ESELGLIKLEKVALVERVSTISGKEAELQRELRDMLQKTTQLSEDYNKEKnrlTEEVEVLREELQNTKAAHLKSVNQLEK 2670
Cdd:PRK03918 390 EKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCP---VCGRELTEEHRKELLEEYTAELKRIEK 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2671 ELQRAQGKIKLMLKSCRQLEGEKEMLQKELSQLEAAQQQRA--GSLVDSNVDEVMTENKALkETLEEKVKEADKYLDKYC 2748
Cdd:PRK03918 467 ELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKEleEKLKKYNLEELEKKAEEY-EKLKEKLIKLKGEIKSLK 545
|
410 420
....*....|....*....|....*...
gi 189458891 2749 SLLISHEELEKAKEILEIEVARLKSRQS 2776
Cdd:PRK03918 546 KELEKLEELKKKLAELEKKLDELEEELA 573
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2087-2572 |
2.86e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.61 E-value: 2.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2087 QTISKALEVALKEKGEFAVQLSSAQEEvhqlRRGIEKLSVRIEADEKKHLSAVAKLKESQRESDSLKDTVETLERELERS 2166
Cdd:PTZ00121 1287 EEKKKADEAKKAEEKKKADEAKKKAEE----AKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAA 1362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2167 EENQELAILDSENLKAEVETLKAQKDEMTKSlrifeldlvtvrterENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQA 2246
Cdd:PTZ00121 1363 EEKAEAAEKKKEEAKKKADAAKKKAEEKKKA---------------DEAKKKAEEDKKKADELKKAAAAKKKADEAKKKA 1427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2247 rvqmEEDSKSAMLMLQMQLKELREEVAAlcNDQETLKAQEqsLDQPGEEVHHLKSSIRKLKVHIDADEKKhqnilEQLKE 2326
Cdd:PTZ00121 1428 ----EEKKKADEAKKKAEEAKKADEAKK--KAEEAKKAEE--AKKKAEEAKKADEAKKKAEEAKKADEAK-----KKAEE 1494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2327 SKHHADLLKDRVENLEQELILSEKNMIFQAEKSKAEIQTLKSEIQRMAQNLQDLQlELisTRSENENLMKELKKEQERVS 2406
Cdd:PTZ00121 1495 AKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAD-EL--KKAEELKKAEEKKKAEEAKK 1571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2407 DLETINSSIENLLKDKEQEKVQMKEEAKITVEMLQTQLKELNETVVSLCNDQEVSKTKE-QNLGSQVQTLELEKAQLLQD 2485
Cdd:PTZ00121 1572 AEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEeKKKVEQLKKKEAEEKKKAEE 1651
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2486 LGEAKNKYIIFQSSVNALTQEVEAGKQKLEKGEKEIRTLKEQLKSQEQLVCKLAQVEGEQQLWQKQKLELRNVTMALEQK 2565
Cdd:PTZ00121 1652 LKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIK 1731
|
....*..
gi 189458891 2566 VQVLQSE 2572
Cdd:PTZ00121 1732 AEEAKKE 1738
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
878-1331 |
3.04e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 53.20 E-value: 3.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 878 QIHQNFVAETNQCISKLQEDAavhQNIVAETLATLESKEkelQLLKEKLEAQQTEVQKLNKNNCLLEGTLKELQ-LLSDT 956
Cdd:pfam15921 123 QMERDAMADIRRRESQSQEDL---RNQLQNTVHELEAAK---CLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRsILVDF 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 957 LSSEKKEMNSIISLSKKNIEELTQA-NEALKEVN-----------------EALEQEKMN----LLQKHE-KITSCIAEQ 1013
Cdd:pfam15921 197 EEASGKKIYEHDSMSTMHFRSLGSAiSKILRELDteisylkgrifpvedqlEALKSESQNkielLLQQHQdRIEQLISEH 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1014 ERSIAELSDQYKQERLQLLQRCEETEAVLEDlrgnyktAQENNAKLECMLSECTALCENRKNELEQLKETFAKEQQEFLT 1093
Cdd:pfam15921 277 EVEITGLTEKASSARSQANSIQSQLEIIQEQ-------ARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEK 349
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1094 KLAFAEEQnrklMLELEIEQQTVRSEITNTNKHSMSATDGLRQECLTLNEEQNEQQNEVSNLTHENEQLMELTQTKHDSY 1173
Cdd:pfam15921 350 QLVLANSE----LTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRN 425
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1174 LAVEPVENSVKATEDEIGKSSSQYQMDIDTKDISLDSYKAQLVHLEALVRIL----------EVQLDQSEEENKKLHLEL 1243
Cdd:pfam15921 426 MEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLrkvveeltakKMTLESSERTVSDLTASL 505
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1244 QTIREELETKSSQDPQSQARTGLKdcdtaeekyvsmLQELSASQNENAHLQ-----CS---------------LQTAVNK 1303
Cdd:pfam15921 506 QEKERAIEATNAEITKLRSRVDLK------------LQELQHLKNEGDHLRnvqteCEalklqmaekdkvieiLRQQIEN 573
|
490 500 510
....*....|....*....|....*....|..
gi 189458891 1304 LNEL----GKMCDVLRVEKLQLESELNDSRTE 1331
Cdd:pfam15921 574 MTQLvgqhGRTAGAMQVEKAQLEKEINDRRLE 605
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
860-1128 |
3.17e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.02 E-value: 3.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 860 EELLQIKGEVEENLSKAEQIHQNfVAETNQCISKLQEDAAVHQNIVAETLATLESKEKELQLLKEKLEAQQTEVQKLNKn 939
Cdd:COG1196 246 AELEELEAELEELEAELAELEAE-LEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEE- 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 940 ncllegtlkELQLLSDTLSSEKKEMNSIISLSKKNIEELTQANEALKEVNEALEQEKMNLLQKHEKITSCIAEQERSIAE 1019
Cdd:COG1196 324 ---------ELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1020 LSDQyKQERLQLLQRCEETEAVLEDLRGNYKTAQENNAKLEcmlsectALCENRKNELEQLKETFAKEQQEFLTKLAFAE 1099
Cdd:COG1196 395 AAEL-AAQLEELEEAEEALLERLERLEEELEELEEALAELE-------EEEEEEEEALEEAAEEEAELEEEEEALLELLA 466
|
250 260
....*....|....*....|....*....
gi 189458891 1100 EQNRKLMLELEIEQQTVRSEITNTNKHSM 1128
Cdd:COG1196 467 ELLEEAALLEAALAELLEELAEAAARLLL 495
|
|
| CENP-F_leu_zip |
pfam10473 |
Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; Cenp-F, a centromeric kinetochore, ... |
1894-1993 |
3.30e-06 |
|
Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance.
Pssm-ID: 463102 [Multi-domain] Cd Length: 140 Bit Score: 49.22 E-value: 3.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1894 KEKFLDMERELTRIKSEKANIEHHILSVETNLEVVQAEKLCLERDTESKQKVIIDLKEELFTVISERNRLREELDNVSKE 1973
Cdd:pfam10473 2 EKKQLHVLEKLKESERKADSLKDKVENLERELEMSEENQELAILEAENSKAEVETLKAEIEEMAQNLRDLELDLVTLRSE 81
|
90 100
....*....|....*....|
gi 189458891 1974 SKALDQMSKKMKEKIEELES 1993
Cdd:pfam10473 82 KENLTKELQKKQERVSELES 101
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
273-494 |
3.50e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.07 E-value: 3.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 273 LHQAKAQNQDLKSKMTELELRLQGQEKEMRSQVNKCQDLQLQLEKTKVELIEKERILNKTRDEVVRSTAQYDQAAAKCTT 352
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 353 LEQKLKTLTEELSchRQNAESAKRSLEQRIKEKEKELQEELS-RQHQSFQALDSEYTQMKTRLTQELQQVKHLHSTLQLE 431
Cdd:COG4942 95 LRAELEAQKEELA--ELLRALYRLGRQPPLALLLSPEDFLDAvRRLQYLKYLAPARREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 189458891 432 LEKVTSVKQQLERNLEEIRLKLSRAEQALQASQVAENELRRSSEEMKKENSLIRSQSEQRTRE 494
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
2106-2581 |
5.02e-06 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 52.44 E-value: 5.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2106 QLSSAQEEVHQLRrgIEKLSVRIEADEKKHLSAVAKLKESQRESDSLKDTVETLERELERSEENQELAILDSENLKAEVE 2185
Cdd:pfam05557 10 RLSQLQNEKKQME--LEHKRARIELEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAELNRLKKKYLEA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2186 TLKAQKDEMTKSLRIFEL------DLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQMEEDSKSaML 2259
Cdd:pfam05557 88 LNKKLNEKESQLADAREVisclknELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNLEKQQSS-LA 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2260 MLQMQLKELREEVAALCNDQETLKAQEQSLdqpgEEVHHLKSSIRKLKVHIdadekkhqnilEQLKESKHHADLLKDRVE 2339
Cdd:pfam05557 167 EAEQRIKELEFEIQSQEQDSEIVKNSKSEL----ARIPELEKELERLREHN-----------KHLNENIENKLLLKEEVE 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2340 NLEQELilseknmiFQAEKSKAEIQTLKSEIQRMAQNL-------QDLQLELIS---TRSENENLMKELKKEQERVSDLE 2409
Cdd:pfam05557 232 DLKRKL--------EREEKYREEAATLELEKEKLEQELqswvklaQDTGLNLRSpedLSRRIEQLQQREIVLKEENSSLT 303
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2410 TINSSIENLLKDKEQEKVQMK---EEAKITVEMLQTQLKELNETVVSLCNDQEVSKT------KEQNLGSQVQTLELEKA 2480
Cdd:pfam05557 304 SSARQLEKARRELEQELAQYLkkiEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRAilesydKELTMSNYSPQLLERIE 383
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2481 QLLQDLGEAKNKYIIFQSSVNALTQEVEAGKQKLEKGEKEIRTLKEQLKSQEQLVCKlaqvEGEQQLWQK-QKLELRNVT 2559
Cdd:pfam05557 384 EAEDMTQKMQAHNEEMEAQLSVAEEELGGYKQQAQTLERELQALRQQESLADPSYSK----EEVDSLRRKlETLELERQR 459
|
490 500
....*....|....*....|..
gi 189458891 2560 MALEQKVQVLQSENNTLQSTYE 2581
Cdd:pfam05557 460 LREQKNELEMELERRCLQGDYD 481
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
18-561 |
5.13e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.25 E-value: 5.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 18 QKIQELEGQLEKLKKEKQQRQFQLDSLEAALQKQKQKVEDGKTEGADLKRENQRLMEICEHLEKSRQKLSHELQVKESQV 97
Cdd:COG1196 253 AELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEEL 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 98 NLQESQLSSCKKQIEKLEQELKRCKSEFERSQQVAQSAdvslnpcstpqklfatpltpSSTYEDLKEKYNKEVEERKRLE 177
Cdd:COG1196 333 EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEA--------------------EAELAEAEEELEELAEELLEAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 178 EEVKALHAKKVSLPVSQATMNHRDIARHQASSSVfpwQQENTPSRLSSDALKTPLRRDGSAAHFLGEEVSPNKSSMKTGR 257
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLERLEEELEEL---EEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELL 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 258 GdcsslpgephSAQLLHQAKAQNQDLKSKMTELELRLQGQEKEMRSQVNKCQDLQLQLEKTKVELIEKERILNKTRDEVV 337
Cdd:COG1196 470 E----------EAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAA 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 338 RSTA----------QYDQAAAKCTTL--EQKLKTLTEELSCHRQNAESAKRSLEQRIKEKEKELQEELSRQHQSFQALDS 405
Cdd:COG1196 540 LEAAlaaalqnivvEDDEVAAAAIEYlkAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLG 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 406 EYTQMKTRLTQELQQVKHLHSTLQLELEKVTSVKQQLERNLEEIRLKLSRAEQALQA--SQVAENELRRSSEEMKKENSL 483
Cdd:COG1196 620 DTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEaeAELEELAERLAEEELELEEAL 699
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 189458891 484 IRSQSEQRTREVCHLEEELGKVKVSLSKSQNFAEEMKAKNTSQEIMLRDLQEKLNQQENSLTLEKLKLALADLERQRN 561
Cdd:COG1196 700 LAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIE 777
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2470-2706 |
5.18e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.69 E-value: 5.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2470 SQVQTLELEKAQLLQDLGEAKNKYIIFQSSVNALTQEVEAGKQKLEKGEKEIRTLKEQLKSQEQlvcKLAQVEGEQQLWQ 2549
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEA---ELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2550 KQKLELRNvtmALEQKVQVLQSENNtlQSTYEALQNSHKSLESELGLIKLEKV--ALVERVSTISGKEAELQRELRDMLQ 2627
Cdd:COG4942 97 AELEAQKE---ELAELLRALYRLGR--QPPLALLLSPEDFLDAVRRLQYLKYLapARREQAEELRADLAELAALRAELEA 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 189458891 2628 KTTQLSEDYNKEKNRLTEEvevlreelQNTKAAHLKSVNQLEKELQRAQGKIKLMLKSCRQLEGEKEMLQKELSQLEAA 2706
Cdd:COG4942 172 ERAELEALLAELEEERAAL--------EALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2284-2492 |
8.08e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.92 E-value: 8.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2284 AQEQSLDQPGEEVHHLKSSIRKLKVHIDADEKKHQNILEQLKESKHHADLLKDRVENLEQELILSEKNM---IFQAEKSK 2360
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELaelEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2361 AEIQTLKSEIQRM------------------AQNLQDLQLELISTRSENENLMKELKKEQERVSDLETINSSIENLLKDK 2422
Cdd:COG4942 97 AELEAQKEELAELlralyrlgrqpplalllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2423 EQEKVQMKEEAKItvemLQTQLKELNETVVSLCNDQEVSKTKEQNLGSQVQTLELEKAQLLQDLGEAKNK 2492
Cdd:COG4942 177 EALLAELEEERAA----LEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
28-591 |
8.38e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.07 E-value: 8.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 28 EKLKKEKQQRQFQldslEAALQKQKQKVEDGKTEgADLKRENQRLMEICEHLEKSRQKLSHELQVKESQVNLQESQLSSC 107
Cdd:PTZ00121 1281 DELKKAEEKKKAD----EAKKAEEKKKADEAKKK-AEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAA 1355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 108 KKQIEKLEQELKRCKSEFERSQQVAQSADVSLNPCSTPQKLFATPLTPSSTYEDLKEK---YNKEVEERKRLEEEVKALH 184
Cdd:PTZ00121 1356 ADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAaaaKKKADEAKKKAEEKKKADE 1435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 185 AKKVSLPVSQAtmnhrDIARHQASSSvfpwQQENTPSRLSSDALKTPLRRDGSAAHFLGEEVSPNKSSMKTGRGDCSSLP 264
Cdd:PTZ00121 1436 AKKKAEEAKKA-----DEAKKKAEEA----KKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAA 1506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 265 GEPHSAQLLHQAKAQNQDLKSKMTEL-----ELRlQGQEKEMRSQVNKCQDLQLQLEKTKVELIEKERilnKTRDEVVRS 339
Cdd:PTZ00121 1507 EAKKKADEAKKAEEAKKADEAKKAEEakkadEAK-KAEEKKKADELKKAEELKKAEEKKKAEEAKKAE---EDKNMALRK 1582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 340 TAQYDQAAAKctTLEQKLKTLTEElscHRQNAESAKRSLEQRIKEKEKELQEELSRQHQsfqaldseytQMKTRLTQELQ 419
Cdd:PTZ00121 1583 AEEAKKAEEA--RIEEVMKLYEEE---KKMKAEEAKKAEEAKIKAEELKKAEEEKKKVE----------QLKKKEAEEKK 1647
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 420 QVKHLHStlqlELEKVTSVKQQLERNLEEIRLKLSRAEQALQASQVAENELRRSSEEMKKENSLIRSQSEQ-RTREVCHL 498
Cdd:PTZ00121 1648 KAEELKK----AEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEkKKAEELKK 1723
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 499 EEELGKVKVSLSKSQNFAEEMKAKNTSQEimlrdlQEKLNQQENSLTLEKLKLALADLERQRNCSQDLLKKREHHIDQLN 578
Cdd:PTZ00121 1724 AEEENKIKAEEAKKEAEEDKKKAEEAKKD------EEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVD 1797
|
570
....*....|...
gi 189458891 579 NKLNKIEKEFETL 591
Cdd:PTZ00121 1798 KKIKDIFDNFANI 1810
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1883-2383 |
8.44e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 51.66 E-value: 8.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1883 KDNATNTEDNYKEKFLDMERELTRIKSE----KANIEHHILSVETNLEVVQAE--KLCLERDTESK---------QKVII 1947
Cdd:pfam15921 305 QEQARNQNSMYMRQLSDLESTVSQLRSElreaKRMYEDKIEELEKQLVLANSEltEARTERDQFSQesgnlddqlQKLLA 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1948 DL--KEELFTVISERNR---------------LREELDNVSKESKALDQMSKKMKEKIEELESHQ-------RESLRHIG 2003
Cdd:pfam15921 385 DLhkREKELSLEKEQNKrlwdrdtgnsitidhLRRELDDRNMEVQRLEALLKAMKSECQGQMERQmaaiqgkNESLEKVS 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2004 AVESEVKDKADLIQTLsfnVGELTKDKAHLQEQ---LQNLQNDSQELSLAIGELEIQIGQLNKEKESLVKESQNFQ---- 2076
Cdd:pfam15921 465 SLTAQLESTKEMLRKV---VEELTAKKMTLESSertVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKnegd 541
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2077 -IKLTESECEkqtiskALEVALKEKGEFAVQLSSAQEEVHQLRRGIEKLSVRIEADEKKHLSAVAKLKESQRESDSLKDT 2155
Cdd:pfam15921 542 hLRNVQTECE------ALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDK 615
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2156 VETLERELERSEENQELAILD-----SENLKAeVETLKAQKDEMTKSLRIFELDLVTVRTERE----NLAKQLQEKQSRV 2226
Cdd:pfam15921 616 KDAKIRELEARVSDLELEKVKlvnagSERLRA-VKDIKQERDQLLNEVKTSRNELNSLSEDYEvlkrNFRNKSEEMETTT 694
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2227 SELDERCSSLRRLLEEKEQARVQMEEDSKSAM---LMLQMQLKELREEVAALcndQETLKAQEQSLDQPGEEVHHLKSSI 2303
Cdd:pfam15921 695 NKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMkvaMGMQKQITAKRGQIDAL---QSKIQFLEEAMTNANKEKHFLKEEK 771
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2304 RKLKVHIDADEKKHQNILEQLKESKHHADLLKDRVENLEQELilseknmifqaEKSKAEIQTLKSEIQRMAQNLQDLQLE 2383
Cdd:pfam15921 772 NKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVAL-----------DKASLQFAECQDIIQRQEQESVRLKLQ 840
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2178-2799 |
8.96e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 51.68 E-value: 8.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2178 ENLKAEVETLKAQKDEMTKSLRIFELDLVTVRTERENLAKQLQEKQS---RVSELDERCSSLRRLLEEK--EQARVQMEE 2252
Cdd:PTZ00121 1234 EAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKAdelKKAEEKKKADEAKKAEEKKkaDEAKKKAEE 1313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2253 DSKSAMLMLQMQLKELREEvAALCNDQETLKAQEQSLDQPGEEVHHLKSSIRKLKVH--IDADEKKHQNILEQLKESKHH 2330
Cdd:PTZ00121 1314 AKKADEAKKKAEEAKKKAD-AAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAekKKEEAKKKADAAKKKAEEKKK 1392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2331 ADLLKDRVENLEQElilSEKNMIFQAEKSKAEIQTLKSEIQRMAQNLQdlqlelisTRSENENLMKELKKEQERVSDLET 2410
Cdd:PTZ00121 1393 ADEAKKKAEEDKKK---ADELKKAAAAKKKADEAKKKAEEKKKADEAK--------KKAEEAKKADEAKKKAEEAKKAEE 1461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2411 INSSIENLLKDKEQEKvqmKEEAKITVEMLQTQLKELNETVVSLCNDQEVSKTKEQNLGSQvqtlELEKAQLLQDLGEAK 2490
Cdd:PTZ00121 1462 AKKKAEEAKKADEAKK---KAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAE----EAKKADEAKKAEEAK 1534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2491 nkyiifqssvnaltQEVEAGKQKLEKGEKEIRTLKEQLKSQEQLVCKLAQVEGEQQLWQKQKLE-LRNVTMALEQKVQVL 2569
Cdd:PTZ00121 1535 --------------KADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEeAKKAEEARIEEVMKL 1600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2570 QSEnntlqstyEALQNSHKSLESELGLIKLEKVALVERVSTisgKEAELQRELRDMLQKTTQLSEDynKEKNRLTEEVEV 2649
Cdd:PTZ00121 1601 YEE--------EKKMKAEEAKKAEEAKIKAEELKKAEEEKK---KVEQLKKKEAEEKKKAEELKKA--EEENKIKAAEEA 1667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2650 LREELQNTKAAHLKSVNQLEKELQRAQGKIKLMLKSCRQLEGEKEMLQKELSQLEAAQQQRAGSLVDSNVDEVMTENKAL 2729
Cdd:PTZ00121 1668 KKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAE 1747
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2730 KETLEEKVKEADKYLDKycsllishEELEKAKEILEIEVARLKSRQSRQDLQSSPLLNSSIPGPSPNTSV 2799
Cdd:PTZ00121 1748 EAKKDEEEKKKIAHLKK--------EEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFAN 1809
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
2318-2532 |
1.06e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 51.45 E-value: 1.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2318 QNILEQLKESKHHADLLKDRVENLEQELilsekNMIFQAEKSKAEIQTLKSEIQRMAQNLQDLQLELI--------STRS 2389
Cdd:PRK11281 42 QAQLDALNKQKLLEAEDKLVQQDLEQTL-----ALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEalkddndeETRE 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2390 ENENL-MKELKKEQERVS--------DLETINSSIENLLKDKEQEKVQMKEEAKITVEmLQTQLKELNETVVSLCNDQEV 2460
Cdd:PRK11281 117 TLSTLsLRQLESRLAQTLdqlqnaqnDLAEYNSQLVSLQTQPERAQAALYANSQRLQQ-IRNLLKGGKVGGKALRPSQRV 195
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 189458891 2461 SKTKEQ---NLGSQVQTLELEKAQLLQDLGEAKNKYIIFQSSV----NALTQEVEAGKqKLEKGEKeirTLKEQLKSQE 2532
Cdd:PRK11281 196 LLQAEQallNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRlehqLQLLQEAINSK-RLTLSEK---TVQEAQSQDE 270
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1929-2138 |
1.09e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.53 E-value: 1.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1929 QAEKLCLERDTESKQKVIIDLKEELFTVISERNRLREELDNVSKESKALDQMSKKMKEKIEELESHQRESLRHIGAVESE 2008
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEE 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2009 VKDKADLIQTLSF-----------NVGELTKDKAHLQEQLQNLQNDSQELSLAIGELEIQIGQLNKEKESLVKESQNFQI 2077
Cdd:COG4942 106 LAELLRALYRLGRqpplalllspeDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEE 185
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 189458891 2078 KLTESECEKQTISKALEVALKEKGEFAVQLSSAQEEVHQLRRGIEKLSVRIEADEKKHLSA 2138
Cdd:COG4942 186 ERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1564-2416 |
1.52e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 50.74 E-value: 1.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1564 LKNLEEKTESQRIMKNKEIEKLEQLLSSERKELSCLRKQYLSEKEQWQQKLTSVTLEMESKLAEEKQQTKTLSLELEVAR 1643
Cdd:pfam02463 175 LKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1644 LQLQELDLSSRSLLGTDLESVVRCQNDNYDIKESEVYISETTEKTPKQDT---DQTCDKDIQQDLGLETSVTESETTRLT 1720
Cdd:pfam02463 255 SSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKlerRKVDDEEKLKESEKEKKKAEKELKKEK 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1721 GEGCEEQPPKTNCEAPAEDKTQDCSECISELCSSSNVLvPMDVLEDQGSIQNLQLQKDTLNENLRLLPEVEDWDKKVESL 1800
Cdd:pfam02463 335 EEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLE-EELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLEL 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1801 LNeiMEADSKLSLQEVQLKMKIATCIQLEKIVKDLRKEKADLSEKLESLPCNQEVCLRVERSEEDLGFNLDMGANELLSK 1880
Cdd:pfam02463 414 AR--QLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLS 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1881 STKDNATNTEDNYKEKFLDMERELTRIKSEKANIEHHILSVETNLEVVQAEKLCLERDTESKQKVIIDLKEELFTVISER 1960
Cdd:pfam02463 492 RQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALT 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1961 NRLREELDNVSKESKALDQMSKKMKEKIEELESHQRESLRHIGAVE-----------SEVKDKADLIQTLSFNVGELTKD 2029
Cdd:pfam02463 572 ELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEddkrakvvegiLKDTELTKLKESAKAKESGLRKG 651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2030 KAHLQEQLQNLQNDSQELSLAIGELEIQIGQLNKEKESLVKESQNFQIKLTESECEKQTISKALEVALKEKGEFAVQLSS 2109
Cdd:pfam02463 652 VSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQ 731
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2110 AQEEVHQLRRGIEKLSVRIEADEKKHLSAVAKLKESQRESDSLKDTVETLERELERSEENQELAIL-DSENLKAEVETLK 2188
Cdd:pfam02463 732 DKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKaQEEELRALEEELK 811
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2189 AQKDEMTKSLRIFELDLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQMEEDSKSAMLMLQMQLKEL 2268
Cdd:pfam02463 812 EEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESK 891
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2269 REEVAALCNDQETLKAQEQSLDQPGEEVHHLKSSIRKLKVHIDADEKKH--QNILEQLKESKHHADLLKDRVENLEQELI 2346
Cdd:pfam02463 892 EEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELllEEADEKEKEENNKEEEEERNKRLLLAKEE 971
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 189458891 2347 LSEKN--MIFQAEKSKAEIQTLKSEIQRMAQNLQDLQLELISTrsENENLMKELKKEQERVSDLETINSSIE 2416
Cdd:pfam02463 972 LGKVNlmAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEE--TCQRLKEFLELFVSINKGWNKVFFYLE 1041
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
885-1060 |
1.74e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.76 E-value: 1.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 885 AETNQCISKLQEDAAVHQNIVAETLATLESKEKELQLLKEKLEAQQTEVQKLNKNNCLLEGTLKELQLLSDTLSSEKKEM 964
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 965 NSIIS------------------LSKKNIEELTQANEALKEVNEALEQEKMNLLQKHEKITSCIAEQERSIAELS---DQ 1023
Cdd:COG4942 103 KEELAellralyrlgrqpplallLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEallAE 182
|
170 180 190
....*....|....*....|....*....|....*..
gi 189458891 1024 YKQERLQLLQRCEETEAVLEDLRGNYKTAQENNAKLE 1060
Cdd:COG4942 183 LEEERAALEALKAERQKLLARLEKELAELAAELAELQ 219
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
368-1125 |
1.79e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 50.74 E-value: 1.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 368 RQNAESAKRSLEQRIKEKEKELQEELSRQHQSFQALD-SEYTQMKTRLTQELQQVKHLHSTLQLELEKVTSVKQQLER-- 444
Cdd:pfam02463 262 KEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELkSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEEle 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 445 ----NLEEIRLKLSRAEQALQASQVAENELRRSSEEMKKENSlIRSQSEQRTREVCHLEEELGKVKVSLSKSQNFAEEMK 520
Cdd:pfam02463 342 kelkELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLES-ERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDL 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 521 AKNTSQEIMLRDLQEKLNQQENSLTLEKLKLALADLERQRNCSQDLLKKREHHIDQLNNKLNKIEKEFETLLSALELKKK 600
Cdd:pfam02463 421 LKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQ 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 601 ECEELKEEKNQISFWKIDSEKLINQIESEKEILLGKINHLETSLKTQQVSPDSNERIRTLEMERENFTVEIKNLQSMLDS 680
Cdd:pfam02463 501 KESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKL 580
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 681 KMVEIKTQKQAYLELQQKSESSDQKHQKEIENMC----LKANKLTGQVESLECKLQLLSSEVVTKDQQYQDLRMEYETLR 756
Cdd:pfam02463 581 RLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEadedDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAE 660
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 757 DLLKSRGSSLVTNEDNQRSSEDNQRSSEDNQRGSLAFEQQPAVSDSFANVMGRKGSINSERSDCSVDggRSPEHIAILQN 836
Cdd:pfam02463 661 KSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRV--QEAQDKINEEL 738
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 837 RVTSLESSLESQNQMNSDLQMRCEELLQIKGEVEENLSKAEQIHQNFVAETNQCISKLQEDAAVHQNIVAETLATLESKE 916
Cdd:pfam02463 739 KLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLE 818
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 917 KELQLLKEKLEAQQTEVQKLNKNnclLEGTLKELQLLSDTLSSEKKEMNSIISLSKKNIEELTQANEALKEVNEALEQEK 996
Cdd:pfam02463 819 EEQLLIEQEEKIKEEELEELALE---LKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKE 895
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 997 MNLLQKHEKITSCIAEQERSIAELSDQYKQERLQLLQRCEETEaVLEDLRGNYKTAQENNAKLEcmlsECTALCENRKNE 1076
Cdd:pfam02463 896 KEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPE-ELLLEEADEKEKEENNKEEE----EERNKRLLLAKE 970
|
730 740 750 760
....*....|....*....|....*....|....*....|....*....
gi 189458891 1077 LEQLKETFAKEQQEFLTKLAFAEEQNRKLMLELEIEQQTVRSEITNTNK 1125
Cdd:pfam02463 971 ELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRL 1019
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
2362-2633 |
2.03e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 50.40 E-value: 2.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2362 EIQTLKSE--IQRMAQNLQDLQLELISTRSEN---ENLMKELKKEQERVSDL--------------ETINSSIENLLKDK 2422
Cdd:COG3206 86 QIEILKSRpvLERVVDKLNLDEDPLGEEASREaaiERLRKNLTVEPVKGSNVieisytspdpelaaAVANALAEAYLEQN 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2423 EQEKvqmKEEAKITVEMLQTQLKELNETVVSLcnDQEVSKTKEQN----LGSQVQTLELEKAQLLQDLGEAKNKYIIFQS 2498
Cdd:COG3206 166 LELR---REEARKALEFLEEQLPELRKELEEA--EAALEEFRQKNglvdLSEEAKLLLQQLSELESQLAEARAELAEAEA 240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2499 SVNALTQEVEAGKQKLE--KGEKEIRTLKEQLKSQEqlvcklAQVEGEQQLWQKQKLELRnvtmALEQKVQVLQSE-NNT 2575
Cdd:COG3206 241 RLAALRAQLGSGPDALPelLQSPVIQQLRAQLAELE------AELAELSARYTPNHPDVI----ALRAQIAALRAQlQQE 310
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 189458891 2576 LQSTYEALQNSHKSLESELGLIKLEKVALVERVSTISGKEAE---LQREL-------RDMLQKTTQLS 2633
Cdd:COG3206 311 AQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAElrrLEREVevarelyESLLQRLEEAR 378
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1769-2249 |
2.21e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.45 E-value: 2.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1769 SIQNLQLQKDTLNENLRLLPEVEDWDKKVESL----------LNEIMEADSKLSLQEVQLKMKIATCIQLEKIVKDLRKE 1838
Cdd:PRK03918 267 RIEELKKEIEELEEKVKELKELKEKAEEYIKLsefyeeyldeLREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKK 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1839 KADLSEKLESLPCNQEVCLRVERSEEDLgfnldMGANELLSKSTKDNATNTEDNYKEKFLDMERELTRIKSEKANIEHHI 1918
Cdd:PRK03918 347 LKELEKRLEELEERHELYEEAKAKKEEL-----ERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEI 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1919 LSVETNLEVVQAEK----LCLERDTESKQKVII--------DLKEELFTVISERNRLREELDNVSKESKALDQMSK--KM 1984
Cdd:PRK03918 422 KELKKAIEELKKAKgkcpVCGRELTEEHRKELLeeytaelkRIEKELKEIEEKERKLRKELRELEKVLKKESELIKlkEL 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1985 KEKIEELEshqrESLRHIGAveSEVKDKADLIQTLSFNVGELTKDKAHLQEQLQNLqndsQELSLAIGELEIQIGQLNKE 2064
Cdd:PRK03918 502 AEQLKELE----EKLKKYNL--EELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKL----EELKKKLAELEKKLDELEEE 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2065 KESLVKESQNFQIkltESECEKQTISKALEVALKEkgefAVQLSSAQEEVHQLRRGIEKLSVRIEADEKKHLSAVAKLKE 2144
Cdd:PRK03918 572 LAELLKELEELGF---ESVEELEERLKELEPFYNE----YLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEE 644
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2145 SQRESDSLK---DTVETLERELERSEENQELAildseNLKAEVETLKAQKDEMTKSLRIFELDLVTVRTERENLaKQLQE 2221
Cdd:PRK03918 645 LRKELEELEkkySEEEYEELREEYLELSRELA-----GLRAELEELEKRREEIKKTLEKLKEELEEREKAKKEL-EKLEK 718
|
490 500
....*....|....*....|....*...
gi 189458891 2222 KQSRVSELDERCSSLRRLLEEKEQARVQ 2249
Cdd:PRK03918 719 ALERVEELREKVKKYKALLKERALSKVG 746
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
2077-2771 |
2.69e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 49.97 E-value: 2.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2077 IKLTESECEKQTISKA-----LEVALKEKGEFAVQLSSAQEEVHQLRRGIEKLS-VRIEADE--KKHLSAVAKLKESQRE 2148
Cdd:TIGR00618 123 AKKSETEEVIHDLLKLdyktfTRVVLLPQGEFAQFLKAKSKEKKELLMNLFPLDqYTQLALMefAKKKSLHGKAELLTLR 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2149 SDSLKDTVETLERELERSEENQELAILDSENLKAEVETLKA---QKDEMTKSLRIFELDLVTVRTERENLAKQLQEKQSR 2225
Cdd:TIGR00618 203 SQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAyltQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEET 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2226 VSELDERCSSLRRLLEEKEQARVQMEEDSKSAMLMLQMQLKE-LREEVAALCNDQETLKAQEQSLDQPGEEVHHLKSSIR 2304
Cdd:TIGR00618 283 QERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAkLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHE 362
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2305 KLKVHIDADEKKH---QNILEQLKESKHHADLLKDRVENLEQELILSEKNMIFQAEKSKAEIQTLKSEIQRMAQNLQDLQ 2381
Cdd:TIGR00618 363 VATSIREISCQQHtltQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAEL 442
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2382 LELISTRSENENLMKE--LKKEQERVSDLETINSSIENLLK---DKEQEKVQMKEEAKITVEMLQTQLKELNETVVSLCN 2456
Cdd:TIGR00618 443 CAAAITCTAQCEKLEKihLQESAQSLKEREQQLQTKEQIHLqetRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDN 522
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2457 DQEVSKTKEQ------NLGSQVQTLELEKAQLLQDLGEAKNKYIIFQSSVNALTQEVEAGKQKLEKGEKEIRTLKEQLKS 2530
Cdd:TIGR00618 523 PGPLTRRMQRgeqtyaQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEK 602
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2531 QEQLVCKLAQVEGEQQLWQKQKLELRNVTMALEQKVQVLQSENNTLQSTYEAL----QNSHKSLESELGLIKLEKVALVE 2606
Cdd:TIGR00618 603 LSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLtqerVREHALSIRVLPKELLASRQLAL 682
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2607 RVSTISGKEAELQRELRDMLQKTTQLSEDYNKEKNRLTEEVEVLREELQNTKAAHLKSVNQLEKELQRaQGKIKLMLKSC 2686
Cdd:TIGR00618 683 QKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMH-QARTVLKARTE 761
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2687 RQLEGEKEMLQKELSQLEAAQQQRAGSLVDSNVDEVMTENKALKETLEEKVKEADKYLDKYCSLLIshEELEKAKEILEI 2766
Cdd:TIGR00618 762 AHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLV--QEEEQFLSRLEE 839
|
....*
gi 189458891 2767 EVARL 2771
Cdd:TIGR00618 840 KSATL 844
|
|
| Filament |
pfam00038 |
Intermediate filament protein; |
2182-2432 |
3.54e-05 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 48.76 E-value: 3.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2182 AEVETLKAQKDEMTKSLRIFELDLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQmeedsksamlmL 2261
Cdd:pfam00038 54 KEIEDLRRQLDTLTVERARLQLELDNLRLAAEDFRQKYEDELNLRTSAENDLVGLRKDLDEATLARVD-----------L 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2262 QMQLKELREEVAALCNDQEtlkaqeqsldqpgEEVHHLKSSIRKLKVHIDADEKKHQNILEQLKESK-HHADLLKDRVEN 2340
Cdd:pfam00038 123 EAKIESLKEELAFLKKNHE-------------EEVRELQAQVSDTQVNVEMDAARKLDLTSALAEIRaQYEEIAAKNREE 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2341 LEQELILSEKNMIFQAEKSKAEIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERVS-DLETINSSIENLl 2419
Cdd:pfam00038 190 AEEWYQSKLEELQQAAARNGDALRSAKEEITELRRTIQSLEIELQSLKKQKASLERQLAETEERYElQLADYQELISEL- 268
|
250
....*....|...
gi 189458891 2420 kdkEQEKVQMKEE 2432
Cdd:pfam00038 269 ---EAELQETRQE 278
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
2035-2592 |
3.64e-05 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 49.44 E-value: 3.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2035 EQLQNLQNDSQELSLAIgelEIQIGQLNKEKESLVKESQNFQIK--LTESECEKQTISKALEVALKEKGEFAVQLSSAQE 2112
Cdd:pfam10174 130 KELFLLRKTLEEMELRI---ETQKQTLGARDESIKKLLEMLQSKglPKKSGEEDWERTRRIAEAEMQLGHLEVLLDQKEK 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2113 EVHQLRRGIE-KLSVRIEADEKKHLSAVAKLKESQ-----RESDSLKDTVETLERELERSEENQELAILDSENLKAEVET 2186
Cdd:pfam10174 207 ENIHLREELHrRNQLQPDPAKTKALQTVIEMKDTKissleRNIRDLEDEVQMLKTNGLLHTEDREEEIKQMEVYKSHSKF 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2187 LKAQKDEMTKSLRIFELDLVTVRTERENLAKQ--------------LQEKQSRVSELDERCSSLRRLLEEKEQArvqMEE 2252
Cdd:pfam10174 287 MKNKIDQLKQELSKKESELLALQTKLETLTNQnsdckqhievlkesLTAKEQRAAILQTEVDALRLRLEEKESF---LNK 363
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2253 DSKsamlmlqmQLKELREEVAALCNdqetlkaqeqsldqpgeEVHHLKSSIRKLKVHIDADEKKHQNILEQLKESKHHAD 2332
Cdd:pfam10174 364 KTK--------QLQDLTEEKSTLAG-----------------EIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQLA 418
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2333 LLKDRVENLEQ------------ELILSEKNMIFQA--EKSKAEIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKEL 2398
Cdd:pfam10174 419 GLKERVKSLQTdssntdtalttlEEALSEKERIIERlkEQREREDRERLEELESLKKENKDLKEKVSALQPELTEKESSL 498
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2399 KKEQERVSDLETINSSIENLLKDKEQEKVQMKEEA-KITVEMLQTQLKELNETVVSLCND------QEVSKTKEQNLGSQ 2471
Cdd:pfam10174 499 IDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECsKLENQLKKAHNAEEAVRTNPEINDrirlleQEVARYKEESGKAQ 578
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2472 VqtlELEKaqLLQDLGEAKNKYIIFQSSVNALTQEVEAGKQKLEKGEKEIRTLKEQLKSQEQLVCKLAQVEGEQQLWQKQ 2551
Cdd:pfam10174 579 A---EVER--LLGILREVENEKNDKDKKIAELESLTLRQMKEQNKKVANIKHGQQEMKKKGAQLLEEARRREDNLADNSQ 653
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 189458891 2552 KLELRNVTMALEQKVQVLQSENNTLQSTYEALQNSHKSLES 2592
Cdd:pfam10174 654 QLQLEELMGALEKTRQELDATKARLSSTQQSLAEKDGHLTN 694
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2016-2246 |
3.67e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 3.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2016 IQTLSFNVGELTKDKAHLQEQLQNLQNDSQELSLAIGELEIQIGQLNKEKESLVKESQNFQIKLTEsecEKQTISKALEV 2095
Cdd:COG4942 36 IAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEA---QKEELAELLRA 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2096 ALKEKGEFAVQLSSAQEEVHQLRRGIEKLSVRIEADEKKhlsaVAKLKESQRESDSLKDTVETLERELERSEENQElail 2175
Cdd:COG4942 113 LYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQ----AEELRADLAELAALRAELEAERAELEALLAELE---- 184
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 189458891 2176 dseNLKAEVETLKAQKDEMTKSLRifeldlvtvrTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQA 2246
Cdd:COG4942 185 ---EERAALEALKAERQKLLARLE----------KELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
530-1249 |
3.75e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 49.73 E-value: 3.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 530 LRDLQEKLNQQENSLTLEK---------LKLALADLERQRNCSQDLLKKREHHIDQLNNKLNKIEKEFEtllSALELKKK 600
Cdd:pfam15921 87 VKDLQRRLNESNELHEKQKfylrqsvidLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELE---AAKCLKED 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 601 ECEELKEEKNQISFWKIDSEKLINQIES---EKEILLGKINHLETSLKT---QQVSPDSNERIRTLEMERENFTVEIKNL 674
Cdd:pfam15921 164 MLEDSNTQIEQLRKMMLSHEGVLQEIRSilvDFEEASGKKIYEHDSMSTmhfRSLGSAISKILRELDTEISYLKGRIFPV 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 675 QSMLDSKMVEikTQKQAYLELQQKSESSDQ---KHQKEIENMCLKANKLTGQVESLECKLQLLSSEVVTKDQQYQDLRME 751
Cdd:pfam15921 244 EDQLEALKSE--SQNKIELLLQQHQDRIEQlisEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSD 321
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 752 YETLRDLLKSRgsslvtnednqrsSEDNQRSSEDNQRgslAFEQQPAVSDSfanvmgRKGSINSERSDCSVDGGRSPEHI 831
Cdd:pfam15921 322 LESTVSQLRSE-------------LREAKRMYEDKIE---ELEKQLVLANS------ELTEARTERDQFSQESGNLDDQL 379
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 832 AILQNRVTSLESSLESQNQMNSDLQMR----CEELLQIKGEVEENLSKAEQIHQNFVAETNQCISKLQEDAAVHQ----- 902
Cdd:pfam15921 380 QKLLADLHKREKELSLEKEQNKRLWDRdtgnSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQgknes 459
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 903 -NIVAETLATLESKEKELQLLKEKLEAQQTEVQKLNKNNCLLEGTLKELQLLSDTLSSEKKEMNSIISLSKKNIEELTQA 981
Cdd:pfam15921 460 lEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNE 539
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 982 NEALKEVNEALEQEKMNLLQKhEKITSCIAEQERSIAELSDQYKQERLQLLQRCEETEAVLEDLRgnyktaqennakLEc 1061
Cdd:pfam15921 540 GDHLRNVQTECEALKLQMAEK-DKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRR------------LE- 605
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1062 mLSECTALCENRKNELEQLKetfAKEQQEFLTKLAFAEEQNRKLMLELEIEQQtvRSEITNTNKHSMSATDGLRQECLTL 1141
Cdd:pfam15921 606 -LQEFKILKDKKDAKIRELE---ARVSDLELEKVKLVNAGSERLRAVKDIKQE--RDQLLNEVKTSRNELNSLSEDYEVL 679
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1142 NEEQNEQQNEVSNLTHENEQLMELTQTKhdsylaVEPVENSVKATEDEIG---KSSSQYQMDIDTKDISLDSYKAQLVHL 1218
Cdd:pfam15921 680 KRNFRNKSEEMETTTNKLKMQLKSAQSE------LEQTRNTLKSMEGSDGhamKVAMGMQKQITAKRGQIDALQSKIQFL 753
|
730 740 750
....*....|....*....|....*....|.
gi 189458891 1219 EALVRILEVQLDQSEEENKKLHLELQTIREE 1249
Cdd:pfam15921 754 EEAMTNANKEKHFLKEEKNKLSQELSTVATE 784
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2174-2777 |
3.91e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 3.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2174 ILDSENLKAEVETLKAQKDEmtksLRIFELDLVTVRTERENL------AKQLQEKQSRVSELDERCSSLRRLLEEKEQAR 2247
Cdd:COG4913 217 MLEEPDTFEAADALVEHFDD----LERAHEALEDAREQIELLepirelAERYAAARERLAELEYLRAALRLWFAQRRLEL 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2248 VQMEEDSksamlmLQMQLKELREEVAALCNDQETLKAQEQSL-----DQPGEEVHHLKSSIRKLKvhidadekkhqnilE 2322
Cdd:COG4913 293 LEAELEE------LRAELARLEAELERLEARLDALREELDELeaqirGNGGDRLEQLEREIERLE--------------R 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2323 QLKESKHHADLLKDRVENLEQELILSEKNMIFQAEKSKAEIQTLKSEIQRMAQNLQDLQLEListrsenENLMKELKKEQ 2402
Cdd:COG4913 353 ELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAAL-------RDLRRELRELE 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2403 ERVSDLETINSSI----ENLLKDKEQEKVQMKEEAKITVEMLQTQLKELN-ETVVslcndqevsktkEQNLGSQVQTLEL 2477
Cdd:COG4913 426 AEIASLERRKSNIparlLALRDALAEALGLDEAELPFVGELIEVRPEEERwRGAI------------ERVLGGFALTLLV 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2478 EKAQLLQ--------DLGEAKNKYIIFQSSVNALTQEVEAGK--QKLEKGEKEIRT-LKEQLKSQEQLVCklaqVEGEQq 2546
Cdd:COG4913 494 PPEHYAAalrwvnrlHLRGRLVYERVRTGLPDPERPRLDPDSlaGKLDFKPHPFRAwLEAELGRRFDYVC----VDSPE- 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2547 lwqkqklELRNVTMALEQKVQV--------------LQSENNTLQSTYEALqnshKSLESELGLIKLEKVALVERVSTIS 2612
Cdd:COG4913 569 -------ELRRHPRAITRAGQVkgngtrhekddrrrIRSRYVLGFDNRAKL----AALEAELAELEEELAEAEERLEALE 637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2613 GKEAELQrELRDMLQKTTQLSEDynkeknrlteevevlreelqntkaahLKSVNQLEKELQRAQGKIKLMLKSC---RQL 2689
Cdd:COG4913 638 AELDALQ-ERREALQRLAEYSWD--------------------------EIDVASAEREIAELEAELERLDASSddlAAL 690
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2690 EGEKEMLQKELSQLE---AAQQQRAGSLvDSNVDEVMTENKALKETLEEKVKEADK----YLDKYCSLLISHEELEKAKE 2762
Cdd:COG4913 691 EEQLEELEAELEELEeelDELKGEIGRL-EKELEQAEEELDELQDRLEAAEDLARLelraLLEERFAAALGDAVERELRE 769
|
650
....*....|....*
gi 189458891 2763 ILEIEVARLKSRQSR 2777
Cdd:COG4913 770 NLEERIDALRARLNR 784
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
1905-2478 |
4.44e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 49.31 E-value: 4.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1905 TRIKSEKANIEHHILSVETNLEVVQAEKLCLERDTESKQKVIIDLKEEL---FTVISERNRLREELDNVSKESKALDQMS 1981
Cdd:COG5022 829 EKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVelaERQLQELKIDVKSISSLKLVNLELESEI 908
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1982 KKMKEKIEELESHQRESLRHIGAVESEVKDKADLIQTLSFNVGELtKDKAHLQEQLQNLQNDSQELSLAIGELEIQIGQL 2061
Cdd:COG5022 909 IELKKSLSSDLIENLEFKTELIARLKKLLNNIDLEEGPSIEYVKL-PELNKLHEVESKLKETSEEYEDLLKKSTILVREG 987
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2062 NKEKEslvkESQNFQikltesecekqtiskalevalKEKGEFAVQLSSAQEEVHQLRRgIEKLSVRIEADEKKHLSAVAK 2141
Cdd:COG5022 988 NKANS----ELKNFK---------------------KELAELSKQYGALQESTKQLKE-LPVEVAELQSASKIISSESTE 1041
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2142 LKeSQRESDSLKDTVETLERELERSEENQELAILDSENLKAEVETLKAQKDEMT----KSLRIFELDLVTVRTERENLAK 2217
Cdd:COG5022 1042 LS-ILKPLQKLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLKtinvKDLEVTNRNLVKPANVLQFIVA 1120
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2218 QlqekQSRVSELDERCSSLRRLLEEKEqarvQMEEDSKSAMLMLQMQLKELREE----VAALCNDQETLKAQEQSLDQPG 2293
Cdd:COG5022 1121 Q----MIKLNLLQEISKFLSQLVNTLE----PVFQKLSVLQLELDGLFWEANLEalpsPPPFAALSEKRLYQSALYDEKS 1192
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2294 EEVHhlkSSIRKLKVHIDADEKKHQNILEQLKESKHHADLLKDRVENLE--QELILSEKNMIFQAEKSKAEIQTLKSEIQ 2371
Cdd:COG5022 1193 KLSS---SEVNDLKNELIALFSKIFSGWPRGDKLKKLISEGWVPTEYSTslKGFNNLNKKFDTPASMSNEKLLSLLNSID 1269
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2372 RMAQnLQDLQLELIST-----------RSENENLMKELKKEQERVSDLETINSSIENLLKDKEQEKVQMK-EEAKITVEM 2439
Cdd:COG5022 1270 NLLS-SYKLEEEVLPAtinsllqyinvGLFNALRTKASSLRWKSATEVNYNSEELDDWCREFEISDVDEElEELIQAVKV 1348
|
570 580 590
....*....|....*....|....*....|....*....
gi 189458891 2440 LQTQLKELNETVVSLCNDQEVSKTKEQNLGSQVQTLELE 2478
Cdd:COG5022 1349 LQLLKDDLNKLDELLDACYSLNPAEIQNLKSRYDPADKE 1387
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
2338-2627 |
4.46e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 48.86 E-value: 4.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2338 VENLEQELILSEKNMIfqaekSKAEIQTLKSEIQrmaqnLQDLQLELISTRsenenlmkeLKKEQERVSDLETINSSIEN 2417
Cdd:PHA02562 156 VEDLLDISVLSEMDKL-----NKDKIRELNQQIQ-----TLDMKIDHIQQQ---------IKTYNKNIEEQRKKNGENIA 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2418 LLKDKEQEKVQMKEEAKITVEMLQTQLKELNETVVSLCNDQEVSKTKEQNLGSQVQTLELEkAQLLQDLGEAKnkyiifq 2497
Cdd:PHA02562 217 RKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKV-IKMYEKGGVCP------- 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2498 ssvnALTQEVEAGKQKLEKGEKEIRTLKEQLKSQEQLVCKLAQVEGEQQLWQKQKLELRNVTMALEQKVQVLQSENNTLQ 2577
Cdd:PHA02562 289 ----TCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVK 364
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 189458891 2578 STYEALQNSHKSLESELGLIKLEKVALVERVSTISgKEAELQRELRDMLQ 2627
Cdd:PHA02562 365 AAIEELQAEFVDNAEELAKLQDELDKIVKTKSELV-KEKYHRGIVTDLLK 413
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
430-1285 |
4.84e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.20 E-value: 4.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 430 LELEKVTSVKQQLERNLEEIRLKLSRaeqalqasqVAENELRRSSEEMKKENSLIRSQSEQRTREVCHLEEELGKVKVSL 509
Cdd:pfam02463 176 KKLIEETENLAELIIDLEELKLQELK---------LKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 510 SKSQNFAEEMKAKNTSQEIMLRDLQEKLNQQENSLTLEKLKLALADLERQRNCSQDLLKKREHHIDQLNNKLNKIEKEFE 589
Cdd:pfam02463 247 RDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKA 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 590 tllsalelkkkeCEELKEE-------KNQISFWKIDSEKLINQIESEKEILLGKINHLETSLKTQQvspDSNERIRTLEM 662
Cdd:pfam02463 327 ------------EKELKKEkeeieelEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKK---LESERLSSAAK 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 663 ERENFTVEIKNLQSMLDSKMVEIKTQKQAYLELQQKSESSDQKHQKEIENMCLKANKLTGQVESLECKLQLLSSEV--VT 740
Cdd:pfam02463 392 LKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELkkSE 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 741 KDQQYQDLRMEYETLRDLLK-SRGSSLVTNEDNQRSSEDNQRSSEDNQRGSLAFEQQPAVSDSFANVMGRKGSINSERSD 819
Cdd:pfam02463 472 DLLKETQLVKLQEQLELLLSrQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIV 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 820 CSVDGGRSPEHIAILQNRVTSLESSLESQNQMNSDLQMRceellqikgeveenlskAEQIHQNFVAETNQCISKLQEDAA 899
Cdd:pfam02463 552 EVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLP-----------------LKSIAVLEIDPILNLAQLDKATLE 614
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 900 VHQNIVAETLATLESKEKELQLLKEKLEAQQTEVQKLNknncllegTLKELQLLSDTLSSEKKEMNSIISLSKKNIEELT 979
Cdd:pfam02463 615 ADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGV--------SLEEGLAEKSEVKASLSELTKELLEIQELQEKAE 686
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 980 QANEALKEVNEALEQEKMNLLQKHEKITSCIAEQERSIAELS-DQYKQERLQLLQRCEETEAVLEDLrgnyKTAQENNAK 1058
Cdd:pfam02463 687 SELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQeAQDKINEELKLLKQKIDEEEEEEE----KSRLKKEEK 762
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1059 LECMLSECTALCENRKNELEQLKETFAKEQQEFLTKLAFAEEQNRKLMLELEIEQQTVRSEITNTNKHSMSATDGLRQEC 1138
Cdd:pfam02463 763 EEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALEL 842
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1139 LTLNEEQNEQQNEVSNL---THENEQLMELTQTKHDSYLAVEPVENSVKATEDEIGKSSSQYQMDIDTKDISLDSYKAQL 1215
Cdd:pfam02463 843 KEEQKLEKLAEEELERLeeeITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEER 922
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1216 VHLEALVRI----------LEVQLDQSEEENKKLHLELQTIREELETKSSQDPQSQARTGLKDCDTAEEKYVSMLQELSA 1285
Cdd:pfam02463 923 IKEEAEILLkyeeepeellLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEE 1002
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
273-503 |
6.43e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.76 E-value: 6.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 273 LHQAKAQNQDLKSKMTELElRLQGQEKEMRSQVNKCQDLQLQLEKTKVELIEKERILNktRDEVVRSTAQYDQAAAKCTT 352
Cdd:COG4913 237 LERAHEALEDAREQIELLE-PIRELAERYAAARERLAELEYLRAALRLWFAQRRLELL--EAELEELRAELARLEAELER 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 353 LEQKLKTLTEEL-SCHRQNAES---AKRSLEQRIkekekelqeelsrqhqsfQALDSEYTQMKTRLTQELQQVKHLHSTL 428
Cdd:COG4913 314 LEARLDALREELdELEAQIRGNggdRLEQLEREI------------------ERLERELEERERRRARLEALLAALGLPL 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 429 QLELEKVTSVKQQLERNLEEIRLKLSRAEQALQASQVAENELRRSSEEMKKE-NSLIRSQS-----EQRTREvcHLEEEL 502
Cdd:COG4913 376 PASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEiASLERRKSniparLLALRD--ALAEAL 453
|
.
gi 189458891 503 G 503
Cdd:COG4913 454 G 454
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2198-2401 |
7.23e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.76 E-value: 7.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2198 LRIFELDLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQarvqmEEDSKSAmlmlQMQLKELREEVAALCN 2277
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWD-----EIDVASA----EREIAELEAELERLDA 682
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2278 DQETLKAQEQSLDQPGEEVHHLKSSIRKLKVHIDADEKKHQNILEQLKESKHHADLLKDRVEnLEQELILSEKnmiFQAE 2357
Cdd:COG4913 683 SSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLAR-LELRALLEER---FAAA 758
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 189458891 2358 KSKAEIQTLKSEIQrmaQNLQDLQLELISTRSENENLMKELKKE 2401
Cdd:COG4913 759 LGDAVERELRENLE---ERIDALRARLNRAEEELERAMRAFNRE 799
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
441-1132 |
7.66e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 48.68 E-value: 7.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 441 QLERNLEEIRLKLSRAEQALQASQVAENELRRSSEEMKKENSLIRSQSEQRTREVCHLEEELG------KVKVSLSKSQN 514
Cdd:pfam12128 231 QAIAGIMKIRPEFTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRtlddqwKEKRDELNGEL 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 515 FAEEMKAKNTSQEIMLRDLQEKLNQQENsltLEKLKlalADLERQRNCSQDLlKKREHHIDQLNNKLNKIEKEFETLLSA 594
Cdd:pfam12128 311 SAADAAVAKDRSELEALEDQHGAFLDAD---IETAA---ADQEQLPSWQSEL-ENLEERLKALTGKHQDVTAKYNRRRSK 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 595 LELKKKECeelkeeknqISFWKIDSEKLINQIESEKEILLGKINHLETSLKTQQvspdsNERIRTLEMERENFTVEIKNL 674
Cdd:pfam12128 384 IKEQNNRD---------IAGIKDKLAKIREARDRQLAVAEDDLQALESELREQL-----EAGKLEFNEEEYRLKSRLGEL 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 675 QSMLDSKMV--EIKTQKQAYLELQQKSESSDQKHQKEIENMCLKANKLTGQVESLECKLQLLSsevvtkdQQYQDLRMEY 752
Cdd:pfam12128 450 KLRLNQATAtpELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQAS-------RRLEERQSAL 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 753 ETLRDLLKSRGSSLVTNEDNQ----RSSEDNQRSSEDNQRGSLAFEQQPAVSDSFANVMGRKGSINSersdcsVDGGRSP 828
Cdd:pfam12128 523 DELELQLFPQAGTLLHFLRKEapdwEQSIGKVISPELLHRTDLDPEVWDGSVGGELNLYGVKLDLKR------IDVPEWA 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 829 EHIAILQNRVTSLESSLESQNQMNSDLQmrcEELLQIKGEVEE---NLSKAEQIHQN-------FVAETNQCISKLQEDA 898
Cdd:pfam12128 597 ASEEELRERLDKAEEALQSAREKQAAAE---EQLVQANGELEKasrEETFARTALKNarldlrrLFDEKQSEKDKKNKAL 673
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 899 AVHQNIVAETLATLESKEKELQL-LKEKLEAQQTE-----VQKLNKNNCLLEGTLKELQLLSDTLSSEKKEMNSIISLSK 972
Cdd:pfam12128 674 AERKDSANERLNSLEAQLKQLDKkHQAWLEEQKEQkrearTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALE 753
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 973 KNIEELTQANEALKEVNEALEQEKMNLLQKHEKITSCIAEQERSIAELSDQYKQERLQLLQRCEETEAVLEDLRGNYKTA 1052
Cdd:pfam12128 754 TWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWYQETWLQRRPRLATQLSNIERAISELQQQLARL 833
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1053 QEN--------------NAKLECMLSECTALCENRKNELEQLKE--TFAKEQQEFLTKLAFAEEQNRKLMLELEIEQQTV 1116
Cdd:pfam12128 834 IADtklrraklemerkaSEKQQVRLSENLRGLRCEMSKLATLKEdaNSEQAQGSIGERLAQLEDLKLKRDYLSESVKKYV 913
|
730
....*....|....*.
gi 189458891 1117 RSEITNTNKHSMSATD 1132
Cdd:pfam12128 914 EHFKNVIADHSGSGLA 929
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
910-1120 |
8.51e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 8.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 910 ATLESKEKELQLLKEKLEAQQTEVQKLNKNNCLLEGTLKELQLLSDTLSSEKKEMNSIISLSKKNIEELTQANEALKEVN 989
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 990 EALEQEKMNLLQKHEK----------ITSCIAEQERSIAELSDQYKQERLQLLQRCEETEAVLEDLRgnyKTAQENNAKL 1059
Cdd:COG4942 100 EAQKEELAELLRALYRlgrqpplallLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALR---AELEAERAEL 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 189458891 1060 ECMLSEctalCENRKNELEQLKetfaKEQQEFLTKLAFAEEQNRKLMLELEIEQQTVRSEI 1120
Cdd:COG4942 177 EALLAE----LEEERAALEALK----AERQKLLARLEKELAELAAELAELQQEAEELEALI 229
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1958-2489 |
9.97e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.21 E-value: 9.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1958 SERNRLREELDNVSKESKALDQMSKK---MKEKIEELESHQRESLRHIGAVESEVKDKADLIQTLSFNVGELTKDKAHLQ 2034
Cdd:PTZ00121 1298 AEEKKKADEAKKKAEEAKKADEAKKKaeeAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAK 1377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2035 EQLQNLQNDSQELslaigeleiqigqlnKEKESLVKESQNFQIKLTESECEKQTISKALEvaLKEKGEFAVQLSSAQEEV 2114
Cdd:PTZ00121 1378 KKADAAKKKAEEK---------------KKADEAKKKAEEDKKKADELKKAAAAKKKADE--AKKKAEEKKKADEAKKKA 1440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2115 HQLRRGIEklsVRIEADEKKHLSAVAKLKESQRESDSLKDTVEtlerelerseenqelaildsENLKAEVETLKAQKDEM 2194
Cdd:PTZ00121 1441 EEAKKADE---AKKKAEEAKKAEEAKKKAEEAKKADEAKKKAE--------------------EAKKADEAKKKAEEAKK 1497
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2195 TKSlrifELDLVTVRTERENLAKQLQEK----QSRVSELDERCSSLRRLLEEKEQARVQMEEDSKSAMLMLQMQLKELRE 2270
Cdd:PTZ00121 1498 KAD----EAKKAAEAKKKADEAKKAEEAkkadEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAE 1573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2271 E--VAALCNDQETLKAQEQSLdqpgEEVHHLKSSIRKLKVHIDADEKKHQNILEQLKESKHHADLLKDRVENLEQELILS 2348
Cdd:PTZ00121 1574 EdkNMALRKAEEAKKAEEARI----EEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKA 1649
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2349 EknmifQAEKSKAEIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERVSDLETINSSIENLLKDKEQEKvQ 2428
Cdd:PTZ00121 1650 E-----ELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELK-K 1723
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 189458891 2429 MKEEAKITVEMLQTQLKELNETVVSLCNDQEvsktkEQNLGSQVQTLELEKAQLLQDLGEA 2489
Cdd:PTZ00121 1724 AEEENKIKAEEAKKEAEEDKKKAEEAKKDEE-----EKKKIAHLKKEEEKKAEEIRKEKEA 1779
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2057-2295 |
1.16e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 1.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2057 QIGQLNKEKESLVKESQNFQIKLTESECEKQTISKALEvalkekgEFAVQLSSAQEEVHQLRRGIEKLSVRIEADEKkhl 2136
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLA-------ALERRIAALARRIRALEQELAALEAELAELEK--- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2137 savaKLKESQRESDSLKDTVETLERELERSEENQELAIL----DSENLKAEVETLKAQKDEMTKSLRIFELDLVTVRTER 2212
Cdd:COG4942 91 ----EIAELRAELEAQKEELAELLRALYRLGRQPPLALLlspeDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALR 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2213 ENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQmeedsksamlmLQMQLKELREEVAALCNDQETLKAQEQSLDQP 2292
Cdd:COG4942 167 AELEAERAELEALLAELEEERAALEALKAERQKLLAR-----------LEKELAELAAELAELQQEAEELEALIARLEAE 235
|
...
gi 189458891 2293 GEE 2295
Cdd:COG4942 236 AAA 238
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
2034-2375 |
1.26e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 48.03 E-value: 1.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2034 QEQLQNLQNDSQELSLAIGELEIQIgQLNKEKESLVKESQNFQIKLT--ESECEKQTI-----SKALEVALKEKGEFAVQ 2106
Cdd:PRK04863 306 QYRLVEMARELAELNEAESDLEQDY-QAASDHLNLVQTALRQQEKIEryQADLEELEErleeqNEVVEEADEQQEENEAR 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2107 LSSAQEEVHQLRRGIEKLSVRIEADEKKHLS---AVAKLKESQRESDslkdtvetlerelerseenqeLAILDSENLKAE 2183
Cdd:PRK04863 385 AEAAEEEVDELKSQLADYQQALDVQQTRAIQyqqAVQALERAKQLCG---------------------LPDLTADNAEDW 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2184 VETLKAQKDEMTKSL--------------RIFELDLVTVR-----TERE-----------------NLAKQLQEKQSRVS 2227
Cdd:PRK04863 444 LEEFQAKEQEATEELlsleqklsvaqaahSQFEQAYQLVRkiageVSRSeawdvarellrrlreqrHLAEQLQQLRMRLS 523
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2228 ELDERCS---SLRRLLEEKEQARVQMEEDsksamlmlQMQLKELREEVAALcndQETLKAQEQSLDQPGEEVHH----LK 2300
Cdd:PRK04863 524 ELEQRLRqqqRAERLLAEFCKRLGKNLDD--------EDELEQLQEELEAR---LESLSESVSEARERRMALRQqleqLQ 592
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 189458891 2301 SSIRKLKVHIDAdEKKHQNILEQLKESKHHADLLKDRVENLEQELILSEKNMIFQAEKSKAEIQTLKSEIQRMAQ 2375
Cdd:PRK04863 593 ARIQRLAARAPA-WLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDEEIERLSQ 666
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
829-1101 |
1.28e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.01 E-value: 1.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 829 EHIAILQNRVTSLESSLESQNQMNSDLQMRCEELLQIKGEVEENLSKAEQIhqnfvaetnqcISKLQEDAAVHQNIVAET 908
Cdd:COG1196 253 AELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQD-----------IARLEERRRELEERLEEL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 909 LATLESKEKELQLLKEKLEAQQTEVQKLnknncllegtLKELQLLSDTLSSEKKEMNSIISLSKKNIEELTQANEALKEV 988
Cdd:COG1196 322 EEELAELEEELEELEEELEELEEELEEA----------EEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 989 NEALEQEKMNLLQKHEKITSCIAEQERSIAELSDQyKQERLQLLQRCEETEAVLEDLRGNYKTAQENNAKLECMLSECTA 1068
Cdd:COG1196 392 LRAAAELAAQLEELEEAEEALLERLERLEEELEEL-EEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLE 470
|
250 260 270
....*....|....*....|....*....|...
gi 189458891 1069 LCENRKNELEQLKETFAKEQQEFLTKLAFAEEQ 1101
Cdd:COG1196 471 EAALLEAALAELLEELAEAAARLLLLLEAEADY 503
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
2223-2788 |
1.63e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 47.59 E-value: 1.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2223 QSRVSELDERCSSLRRLLEEKEQARVQMEEDSKSAMLMLQmQLKELREEVAALCNDQETLKAQEQSLDQPGEEVHHLKSS 2302
Cdd:PRK01156 179 RAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLK-EIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2303 IRKlkvhIDADEKKHQNILEQLKESKHHADLLKDRVENLEQELILSEKNMIFQAEKSKAEIQTLKSEIQRMAQNLQDLQl 2382
Cdd:PRK01156 258 IKT----AESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILSNIDAEINKYHAIIKKLS- 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2383 ELISTRSENENLMKELKKEQERVSDLETINSSIENLLKDKEQEKVQMKEEAKitvemlqtqlkelnetvvslcNDQEVSK 2462
Cdd:PRK01156 333 VLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSK---------------------NIERMSA 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2463 TKEQNLGSQVQTLELEKAQLlqdlGEAKNKYIIFQSSVNALTQEVEAGKQKLEKGEKEIRTLKEQLKSQeqlVCklaqve 2542
Cdd:PRK01156 392 FISEILKIQEIDPDAIKKEL----NEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCP---VC------ 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2543 geqqlwqkqklelrNVTMALEQKVQVLQSENNTLQSTYEALQNshksLESELGLIKLEKVALVERVSTISGKEA-ELQRE 2621
Cdd:PRK01156 459 --------------GTTLGEEKSNHIINHYNEKKSRLEEKIRE----IEIEVKDIDEKIVDLKKRKEYLESEEInKSINE 520
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2622 LRDMLQKTTQLSEDYNKEkNRLTEEVEVLREELQNTKAAHLKSVNQLEKELQRAQGKIKLMlkSCRQLEGEKEMLQKELS 2701
Cdd:PRK01156 521 YNKIESARADLEDIKIKI-NELKDKHDKYEEIKNRYKSLKLEDLDSKRTSWLNALAVISLI--DIETNRSRSNEIKKQLN 597
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2702 QLEAAQQQragslVDSNVDEVMTENKALKETLEEKVKEADKYLDKYCSLLISHEELEKAKEILEIEVARLKSRQSRQDLQ 2781
Cdd:PRK01156 598 DLESRLQE-----IEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEI 672
|
....*..
gi 189458891 2782 SSPLLNS 2788
Cdd:PRK01156 673 TSRINDI 679
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
1869-2767 |
1.70e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 47.74 E-value: 1.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1869 NLDMGANELLSKSTKDNATNTEDnyKEKFLDMERELTRIKSEKANIEHHilSVETNLEVVQAEK-LCLERDTESKQKVII 1947
Cdd:TIGR01612 672 DIDALYNELSSIVKENAIDNTED--KAKLDDLKSKIDKEYDKIQNMETA--TVELHLSNIENKKnELLDIIVEIKKHIHG 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1948 DLKEELFTVISE-RNRLREELDNVSKESKALDQMSKkMKEKIEELESHQRESLRHIGAVESEVKDKAD----LIQTLSFN 2022
Cdd:TIGR01612 748 EINKDLNKILEDfKNKEKELSNKINDYAKEKDELNK-YKSKISEIKNHYNDQINIDNIKDEDAKQNYDkskeYIKTISIK 826
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2023 VGELTKdkahLQEQLQNLQNDsqelslAIGELEIQIGQLNKEKESLVKESQNFQikltesecekqtiskalEVALKEKGE 2102
Cdd:TIGR01612 827 EDEIFK----IINEMKFMKDD------FLNKVDKFINFENNCKEKIDSEHEQFA-----------------ELTNKIKAE 879
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2103 FA-VQLSSAQEEVHQLRRGIEKLSVRIEaDEKKHLSAVAKLKESQRESDSLKDTVET--LERELERSEENQELAILDSEN 2179
Cdd:TIGR01612 880 ISdDKLNDYEKKFNDSKSLINEINKSIE-EEYQNINTLKKVDEYIKICENTKESIEKfhNKQNILKEILNKNIDTIKESN 958
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2180 LkaeVEtlKAQKDEmtkslriFELDLVTVRTERENLAKQ--LQEKQSRVSELDERCSSLRRLLEEkeqarvqmeedSKSA 2257
Cdd:TIGR01612 959 L---IE--KSYKDK-------FDNTLIDKINELDKAFKDasLNDYEAKNNELIKYFNDLKANLGK-----------NKEN 1015
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2258 MLMLQMQLKElreevaALCNDQETlKAQEQSLDQPGEEVHhLKSSIRKLKVHIDAD-----EKKHQNILEQLKESKHHAD 2332
Cdd:TIGR01612 1016 MLYHQFDEKE------KATNDIEQ-KIEDANKNIPNIEIA-IHTSIYNIIDEIEKEigkniELLNKEILEEAEINITNFN 1087
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2333 LLKDRVENLEQELILSEKNMifqaeKSKAEIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKE---QERVSDLE 2409
Cdd:TIGR01612 1088 EIKEKLKHYNFDDFGKEENI-----KYADEINKIKDDIKNLDQKIDHHIKALEEIKKKSENYIDEIKAQindLEDVADKA 1162
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2410 TINSSIENLlkDKEQEKVQMKEEAKitvemlqtqlKELNETVVSLCNdqEVSktkeqnlgsqvqtlELEKAQllQDLGEA 2489
Cdd:TIGR01612 1163 ISNDDPEEI--EKKIENIVTKIDKK----------KNIYDEIKKLLN--EIA--------------EIEKDK--TSLEEV 1212
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2490 KNKYIIFQSSVNALTqeveagkqkLEKGEKEIRTLKEQLKSQEQLVCKLAQVEGEQQLWQKQKlelrNVTMALEQKVQVL 2569
Cdd:TIGR01612 1213 KGINLSYGKNLGKLF---------LEKIDEEKKKSEHMIKAMEAYIEDLDEIKEKSPEIENEM----GIEMDIKAEMETF 1279
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2570 QSENNTLQSTYEALQNSHKSLESelglIKLEKVALVE---RVSTISGKEAELQRELRDMLQKTTQLSEDYNKEKNRLTEE 2646
Cdd:TIGR01612 1280 NISHDDDKDHHIISKKHDENISD----IREKSLKIIEdfsEESDINDIKKELQKNLLDAQKHNSDINLYLNEIANIYNIL 1355
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2647 VEVLREELQNTKAAHLKSVNQLEKELQRAQGKIKLMLKSCrqlegekemlqKELSQLEAAQQQRAGSLVDSNVDEVMTEN 2726
Cdd:TIGR01612 1356 KLNKIKKIIDEVKEYTKEIEENNKNIKDELDKSEKLIKKI-----------KDDINLEECKSKIESTLDDKDIDECIKKI 1424
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|
gi 189458891 2727 KALKETL--EEK-----VKEADKYlDKYCSLLISHEEL--EKAKEILEIE 2767
Cdd:TIGR01612 1425 KELKNHIlsEESnidtyFKNADEN-NENVLLLFKNIEMadNKSQHILKIK 1473
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
2343-2765 |
1.71e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 47.41 E-value: 1.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2343 QELILSEKNMIFQAEKSKAEIQ-TLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERVSDLETINSSIENLLKD 2421
Cdd:pfam05483 193 EKMILAFEELRVQAENARLEMHfKLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQ 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2422 KEQEKVQMKEEAKITVEMLQTQLKELNETVVSLCNDQEVSKTKEQNLGSQVQT---LELEKAQLLQDLGEAKNKYII--- 2495
Cdd:pfam05483 273 LEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTicqLTEEKEAQMEELNKAKAAHSFvvt 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2496 -FQSSVNALTQEVEAGKQKLEKGEK----------------------------EIRTLKEQLKSQEQLVCKLAQVEGEQQ 2546
Cdd:pfam05483 353 eFEATTCSLEELLRTEQQRLEKNEDqlkiitmelqkksseleemtkfknnkevELEELKKILAEDEKLLDEKKQFEKIAE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2547 LWQKQKLELRNVTMALEQKVQVLQSENNTLQSTYEALQNSHKSLESELGLIKLEKVALVERVSTISGKEAELQRELRDML 2626
Cdd:pfam05483 433 ELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMT 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2627 QKTTQLSEDYNKEKNRlTEEVEVLREELQNTKAAHLKSVNQLEKELQRAQGKIKLML----KSCRQLEGEKEMLQKELSQ 2702
Cdd:pfam05483 513 LELKKHQEDIINCKKQ-EERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLdkseENARSIEYEVLKKEKQMKI 591
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 189458891 2703 LEAAQQQRAGSLVDSN--VDEVMTENKALKETLEEKVKEADKYLDKYCSLLIsheELEKAKEILE 2765
Cdd:pfam05483 592 LENKCNNLKKQIENKNknIEELHQENKALKKKGSAENKQLNAYEIKVNKLEL---ELASAKQKFE 653
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
405-1293 |
2.00e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 47.35 E-value: 2.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 405 SEYTQMKTRLTQELQQVKHLHSTLQLELEKVTSVKQQLERNLEEIRLKLSRAEQALQASQVAENELRRSSEEMKK----- 479
Cdd:TIGR00606 182 TRYIKALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEiehnl 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 480 ------ENSLIRSQSEQRTREVCHLEEELGKVKVSLSKSQ---NFAEEMKAKNTSQEIMLRDLQ---EKLNQQENSLTLE 547
Cdd:TIGR00606 262 skimklDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEqlnDLYHNHQRTVREKERELVDCQrelEKLNKERRLLNQE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 548 KLKLALA------------------DLERQRNCSQDLLKKREHHID---QLNNKLN-KIEKEFETLLSALELKKKECEEL 605
Cdd:TIGR00606 342 KTELLVEqgrlqlqadrhqehirarDSLIQSLATRLELDGFERGPFserQIKNFHTlVIERQEDEAKTAAQLCADLQSKE 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 606 KEEKNQISFWKIDSEKLINQIESEKEILLGKINHLETSLKTQQVSPDSNERIRTLEMERENFTVEIKNLQsmldsKMVEI 685
Cdd:TIGR00606 422 RLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAE-----KNSLT 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 686 KTQKQAYLELQQKSESSDQKHQKEIENMCLKANKLTGQVESLecklqLLSSEVVTKDQQYQDLRMEYET----------- 754
Cdd:TIGR00606 497 ETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQME-----MLTKDKMDKDEQIRKIKSRHSDeltsllgyfpn 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 755 ---LRDLLKSRGSSLVTNEDNQRSSEDNQRSSEDNQRG-----SLAFEQQPAVSDSFANVMGRKgSINSERSDCSVDGGR 826
Cdd:TIGR00606 572 kkqLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHinnelESKEEQLSSYEDKLFDVCGSQ-DEESDLERLKEEIEK 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 827 SPEHIAILQNRVTSLESSLESQNQMNSDLQMRCEELLQIKGEVEENLSKAEQIHQNF---VAETNQCISKLQEDAAVHQN 903
Cdd:TIGR00606 651 SSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLApdkLKSTESELKKKEKRRDEMLG 730
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 904 IVAETLATLESKEKELQLLKEKLEAQQTEVQK----LNKNNCLLEGTLKELQLLSDTLS-----------SEKKEMNSII 968
Cdd:TIGR00606 731 LAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRlkndIEEQETLLGTIMPEEESAKVCLTdvtimerfqmeLKDVERKIAQ 810
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 969 SLSKKNIEELTQANEALKEVNEALEQEKMNLLQKHEKITSCIAEQERSIAEL---SDQYKQERLQLLQRCEETEAVLEDL 1045
Cdd:TIGR00606 811 QAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLkskTNELKSEKLQIGTNLQRRQQFEEQL 890
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1046 RGNYKTAQennaklecmlsECTALCENRKNELEQLKETFAKEQQEFLTKLAFAEEQNRKLMLELeieqQTVRSEITNTNK 1125
Cdd:TIGR00606 891 VELSTEVQ-----------SLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKV----NDIKEKVKNIHG 955
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1126 HSMSATDGLRQECLTLNEEQNEQQNEVSNLTHENEQLMEltQTKHDSYLAVEPVENSvkatedEIGKSSSQYQMDIDTKD 1205
Cdd:TIGR00606 956 YMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQE--KINEDMRLMRQDIDTQ------KIQERWLQDNLTLRKRE 1027
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1206 ISLDSYKAQLVhlEALVRILEVQLDQSEEENKKLHLELQTIREE-------LETKSSQDPQSQARTGLKDCDTAEEKYVS 1278
Cdd:TIGR00606 1028 NELKEVEEELK--QHLKEMGQMQVLQMKQEHQKLEENIDLIKRNhvlalgrQKGYEKEIKHFKKELREPQFRDAEEKYRE 1105
|
970
....*....|....*
gi 189458891 1279 MLQELSASQNENAHL 1293
Cdd:TIGR00606 1106 MMIVMRTTELVNKDL 1120
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
20-674 |
2.00e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.24 E-value: 2.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 20 IQELEGQLEKLKKEKQQ-----------RQFQLDSLEAALQKQKQKVEDGKTEGADLKRENQRLMEICEHLEKSRQKLSH 88
Cdd:COG1196 195 LGELERQLEPLERQAEKaeryrelkeelKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 89 ELQVKESQVNLQESQLSSCKKQIEKLEQELKRCKSEFERSQQVAQSADVSLnpcstpqklfatpltpsstyEDLKEKYNK 168
Cdd:COG1196 275 ELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEEL--------------------AELEEELEE 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 169 EVEERKRLEEEVKALHAKKVSLpvsQATMNHRDIARHQASSSVFPWQQEntpsrlssdalktplrrdgsaahflgeevsp 248
Cdd:COG1196 335 LEEELEELEEELEEAEEELEEA---EAELAEAEEALLEAEAELAEAEEE------------------------------- 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 249 nkssmktgrgdcsslpgephsaqlLHQAKAQNQDLKSKMTELELRLQGQEKEMRSQVNKCQDLQLQLEKTKVELIEKERI 328
Cdd:COG1196 381 ------------------------LEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEE 436
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 329 LNKTRDEVVRSTAQYDQAAAKCTTLEQKLKTLTEELSCHRQNAESAKRSLEQRIKEKEKELQEELSRQHQSFQALDSEYT 408
Cdd:COG1196 437 EEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLL 516
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 409 QMKTRLTQELQQVkhlhstLQLELEKVTSVKQQLERNLEEIRLKLSRAEQALQASQVAENELRRS---SEEMKKENSLIR 485
Cdd:COG1196 517 AGLRGLAGAVAVL------IGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATflpLDKIRARAALAA 590
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 486 SQSEQRTREVCHLEEELGKVKVSLSKSQNFAEEMKAKNTSQEIMLRDLQEKLNQQENSLTLEK--LKLALADLERQRNCS 563
Cdd:COG1196 591 ALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGegGSAGGSLTGGSRREL 670
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 564 QDLLKKREHHIDQLNNKLNKIEKEFETLLSALELKKKECEELKEEKNQisfWKIDSEKLINQIESEKEILLGKIN-HLET 642
Cdd:COG1196 671 LAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLE---EELEEEALEEQLEAEREELLEELLeEEEL 747
|
650 660 670
....*....|....*....|....*....|..
gi 189458891 643 SLKTQQVSPDSNERIRTLEMERENFTVEIKNL 674
Cdd:COG1196 748 LEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1958-2157 |
2.15e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 2.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1958 SERNRLREELDNVSKESKALDQMSKKMKEKIEELESHQRESLRHIGAVESEVKDKADLIQTLSFNVGELTKDKAHLQEQL 2037
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2038 QNLQND---------------------SQELSLAIGELEIQIGQLNKEKESLVKESQNFQIKLTESECEKQTISKALEVA 2096
Cdd:COG4942 100 EAQKEElaellralyrlgrqpplalllSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 189458891 2097 LKEKGEFAVQLSSAQEEVhqlrrgiEKLSVRIEADEKKHLSAVAKLKESQRESDSLKDTVE 2157
Cdd:COG4942 180 LAELEEERAALEALKAER-------QKLLARLEKELAELAAELAELQQEAEELEALIARLE 233
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
475-1084 |
2.21e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.94 E-value: 2.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 475 EEMKKENSLIRSQSEQRTREVCHLEEELGKVKVSLSKSQNFAEEMKAKNTSQEIMLRDLQEKLNQQENSLTLEKLKLAL- 553
Cdd:TIGR04523 36 KQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNd 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 554 ----ADLERQRNCSQDLLKKREHHIDQLNNKLNKIEKEFETLLSALELKKKECEELKEEKNQISFWKIDSEKLINQIESE 629
Cdd:TIGR04523 116 keqkNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNK 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 630 KEILLGKINHLETSlktqqvspdsNERIRTLEMERENFTVEIKNLQSMLDSKMVEIKTQKQAYLELQQKSE---SSDQKH 706
Cdd:TIGR04523 196 LLKLELLLSNLKKK----------IQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNqlkDEQNKI 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 707 QKEIENMCLKANKLTGQVESLECKLQLLSSEVVT-KDQQYQDLRMEyetLRDLLKSRGSSLvTNEDNQRSSEDNQRSSED 785
Cdd:TIGR04523 266 KKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDlNNQKEQDWNKE---LKSELKNQEKKL-EEIQNQISQNNKIISQLN 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 786 NQRGSLAFEQQPAVSD--SFANVMGRKgsiNSERSDCSVDGGRSPEHIAILQNRVTSLESSLESQNQMNSDLQMRCEELL 863
Cdd:TIGR04523 342 EQISQLKKELTNSESEnsEKQRELEEK---QNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQ 418
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 864 QIKgeveENLSKAEQIHQNFVAETNQCISKLQEDAAVHQNIVAETLATLESKEKELQLL--------------KEKLEAQ 929
Cdd:TIGR04523 419 QEK----ELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLsrsinkikqnleqkQKELKSK 494
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 930 QTEVQKLNKNNCLLEGTLKEL-----QLLS--DTLSSEKKEMNSIISLSKKNIEELTQANEALKEVNEALEQEKmNLLQK 1002
Cdd:TIGR04523 495 EKELKKLNEEKKELEEKVKDLtkkisSLKEkiEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNK-EIEEL 573
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1003 HEKITSCIAEQERsIAELSDQYKQERLQLLQRCEETEAVLEDLRGNYKTAQENNAKLECMLSECTALCENRKNELEQLKE 1082
Cdd:TIGR04523 574 KQTQKSLKKKQEE-KQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKE 652
|
..
gi 189458891 1083 TF 1084
Cdd:TIGR04523 653 TI 654
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
424-1126 |
2.28e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 47.02 E-value: 2.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 424 LHSTLQLELEKVTSVKQQLERNLEEIRLKLSRAEQALQASQVAENELR--------RSSEEMKKENSLIRSQSEqrTREV 495
Cdd:pfam05483 79 LYSKLYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQfenekvslKLEEEIQENKDLIKENNA--TRHL 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 496 CHLEEELGKVKVSLSKSQNFAEEMKAK-----NTSQEIMLRDLQEKLNQQENSLTLEKLKLaladlerqrncsQDLLKKR 570
Cdd:pfam05483 157 CNLLKETCARSAEKTKKYEYEREETRQvymdlNNNIEKMILAFEELRVQAENARLEMHFKL------------KEDHEKI 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 571 EHHIDQLNNKLNKIEKEFETLLsalelkkKECEELKEEKNQISFWKIDSEKLINQIESEKEI-------LLGKINHLETS 643
Cdd:pfam05483 225 QHLEEEYKKEINDKEKQVSLLL-------IQITEKENKMKDLTFLLEESRDKANQLEEKTKLqdenlkeLIEKKDHLTKE 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 644 LKTQQVS-PDSNERIRTLEMERENFTVEIKNLQSMLDSKMVEIKTQKQAYLELQQKSESSDQKHQKEIENMCLKANKLTG 722
Cdd:pfam05483 298 LEDIKMSlQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNED 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 723 QVESLECKLQLLSSEVVTKDQQYQDLRMEYETLRDLLKSRGSSLVTNEDNQRSSEDNQRSSEDnqrgslafeqqpavsds 802
Cdd:pfam05483 378 QLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQE----------------- 440
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 803 fanVMGRKGSINSERSDCSVDGGRSPEHIAILQNRVTSLESSLESQNQMNSDLQMRCEELLQIKGEVEENLSKAEQIHQN 882
Cdd:pfam05483 441 ---LIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKK 517
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 883 FVAETNQCisKLQEDAAVHQnivAETLATLESK-EKELQLLKEKLEAQQTEVQ----KLNKNNCLLEGTLKELQLLSDTL 957
Cdd:pfam05483 518 HQEDIINC--KKQEERMLKQ---IENLEEKEMNlRDELESVREEFIQKGDEVKckldKSEENARSIEYEVLKKEKQMKIL 592
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 958 SSEKKEMNSIISLSKKNIEELTQANEALKEVNEALEQEKMNLLQKHEKITSCIAEQERSIAELSDQYKQE-------RLQ 1030
Cdd:pfam05483 593 ENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEiedkkisEEK 672
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1031 LLQRCEETEAVLEDLrgnYKTAQENNAKLECMLSECTALCENRKNELEQLKETFAKEQQEFLTKlafaEEQNRKLMLELE 1110
Cdd:pfam05483 673 LLEEVEKAKAIADEA---VKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNK----EQEQSSAKAALE 745
|
730
....*....|....*.
gi 189458891 1111 IEQQTVRSEITNTNKH 1126
Cdd:pfam05483 746 IELSNIKAELLSLKKQ 761
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1925-2449 |
2.28e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.68 E-value: 2.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1925 LEVVQAEKLCLERDTESKQKVIIDLKEELFTVISERNRLREELDNVSKESKALDQMSKKMKEKIEELEsHQRESLRHIGA 2004
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELR-EELEKLEKLLQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2005 VESEVKDKADLIQTLSFNVGELTKDKAHLQEqLQNLQNDSQELSLAIGELEIQIGQLnkekeslvkesqnFQIKLTESEC 2084
Cdd:COG4717 127 LLPLYQELEALEAELAELPERLEELEERLEE-LRELEEELEELEAELAELQEELEEL-------------LEQLSLATEE 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2085 EKQTISKALEVALKEKGEFAVQLSSAQEEVHQLRRGIEKLSVRIEADEKKH--------LSAVAKLKESQRESDSLKDTV 2156
Cdd:COG4717 193 ELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEErlkearllLLIAAALLALLGLGGSLLSLI 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2157 ETLERELERSEenqELAILDSENLKAEVETLKAQKDEMTKSLRIFELDLVTVRTERENLAKQLQEKQSRVSELDERCSSL 2236
Cdd:COG4717 273 LTIAGVLFLVL---GLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEEL 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2237 RRLLEEKEQARVQMEEDSKSAML--MLQMQLKELREEVAALCNDQETLKAQEQSLDQPGEEVHHLKSSIRKLKVHIDADE 2314
Cdd:COG4717 350 QELLREAEELEEELQLEELEQEIaaLLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEE 429
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2315 kkhqnILEQLKESKHHADLLKDRVENLEQELIlSEKNMIFQAEKSKaEIQTLKSEIQRMAQNLQDLQLELISTRSENENL 2394
Cdd:COG4717 430 -----LEEELEELEEELEELEEELEELREELA-ELEAELEQLEEDG-ELAELLQELEELKAELRELAEEWAALKLALELL 502
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 189458891 2395 MKELKK-EQERVSDLETINSSIENLLKDKEQEKVQMKEEAKITVEMLQTQLKELNE 2449
Cdd:COG4717 503 EEAREEyREERLPPVLERASEYFSRLTDGRYRLIRIDEDLSLKVDTEDGRTRPVEE 558
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
2266-2775 |
2.41e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.94 E-value: 2.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2266 KELREEVAALCNDQETLKAQEQSLDQPGEEVHHLKSSIRKLKVHIDADEKKHQNILEQLKESKHHADLLKDRVENLEQEL 2345
Cdd:TIGR04523 47 NELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVEL 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2346 ILSEKnmifQAEKSKAEIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERVSDLETINSSIENLLKDKEQE 2425
Cdd:TIGR04523 127 NKLEK----QKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELL 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2426 KVQMKEEAKITVEmLQTQLKELNETVVSLCNDQEVSKTKEQNLGSQVQTLELEKAQLLQDLGEAKNKyiifqssVNALTQ 2505
Cdd:TIGR04523 203 LSNLKKKIQKNKS-LESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQ-------LSEKQK 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2506 EVEAGKQKLEKGEKEIRTLKEQLKSQEQlvcklaqvEGEQQLWQKQKLELRNVtmalEQKVQVLQSENNTLQSTYEALQN 2585
Cdd:TIGR04523 275 ELEQNNKKIKELEKQLNQLKSEISDLNN--------QKEQDWNKELKSELKNQ----EKKLEEIQNQISQNNKIISQLNE 342
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2586 SHKSLESELGLIKLEKVALVERVSTISGKEAELQRELRDMLQKTTQLSEDYNKEKNRLTEEVEVLREELQNTKAAHlKSV 2665
Cdd:TIGR04523 343 QISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQ-QEK 421
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2666 NQLEKELQRAQGKIKLMLKSCRQLEGEKEMLQKELSQLEAAQQQragslVDSNVDEVMTENKALKETLEEKVKEADKYLD 2745
Cdd:TIGR04523 422 ELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRES-----LETQLKVLSRSINKIKQNLEQKQKELKSKEK 496
|
490 500 510
....*....|....*....|....*....|
gi 189458891 2746 KYCSLLISHEELEKAKEILEIEVARLKSRQ 2775
Cdd:TIGR04523 497 ELKKLNEEKKELEEKVKDLTKKISSLKEKI 526
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
2500-2719 |
2.52e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.55 E-value: 2.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2500 VNALTQE--VEAGKQKLEKGEKEIRTLKEQLKSQEQlvcKLAQVEGEQQLWQKQK--LELRNVTMALEQKVQVLQSENNT 2575
Cdd:COG3206 154 ANALAEAylEQNLELRREEARKALEFLEEQLPELRK---ELEEAEAALEEFRQKNglVDLSEEAKLLLQQLSELESQLAE 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2576 LQSTYEALQNSHKSLESELGLIKLEKVALVE--RVSTISGKEAELQRELRDMLQKTT-------QLSEDYNKEKNRLTEE 2646
Cdd:COG3206 231 ARAELAEAEARLAALRAQLGSGPDALPELLQspVIQQLRAQLAELEAELAELSARYTpnhpdviALRAQIAALRAQLQQE 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2647 VEVLREELQNTKAAHLKSVNQLEKELQRAQGKIKLM---------LKscRQLEGEKEMLQKELSQLEAAQQQRAGSLVDS 2717
Cdd:COG3206 311 AQRILASLEAELEALQAREASLQAQLAQLEARLAELpeleaelrrLE--REVEVARELYESLLQRLEEARLAEALTVGNV 388
|
..
gi 189458891 2718 NV 2719
Cdd:COG3206 389 RV 390
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
2264-2710 |
2.64e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.68 E-value: 2.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2264 QLKELREEVAALCNDQETLKAQEQSLDQPGEEVHHLKSSIRKLKVHIDADEKKHQN--ILEQLKESKHHADLLKDRVENL 2341
Cdd:COG4717 72 ELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLlpLYQELEALEAELAELPERLEEL 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2342 EQElILSEKNMIFQAEKSKAEIQTLKSEIQR--------MAQNLQDLQLELISTRSENENLMKELKKEQERVSDLETINS 2413
Cdd:COG4717 152 EER-LEELRELEEELEELEAELAELQEELEElleqlslaTEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELE 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2414 SIENLLKDKEQEKVQMKEEAKI----TVEMLQTQLKELNETVVS------------------LCNDQEVSKTKEQNLGSQ 2471
Cdd:COG4717 231 QLENELEAAALEERLKEARLLLliaaALLALLGLGGSLLSLILTiagvlflvlgllallfllLAREKASLGKEAEELQAL 310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2472 VQTLELEKAQLLQDLGEAKNKYIIFQSSVNALTQEVEAGKQKLEKGEKEIRTLK-EQLKSQEQLVCKLAQVEGEQQLWQK 2550
Cdd:COG4717 311 PALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQlEELEQEIAALLAEAGVEDEEELRAA 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2551 qklelrnvtmaLEQKVQvlqsenntlqstYEALQNSHKSLESELGLIKLEKVALVERVSTisgkeaelqRELRDMLQKTT 2630
Cdd:COG4717 391 -----------LEQAEE------------YQELKEELEELEEQLEELLGELEELLEALDE---------EELEEELEELE 438
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2631 QLSEDYNKEKNRLTEEVEVLREELQNTKAAHlkSVNQLEKELQRAQGKIKLMLKSCRQLEGEKEMLQKELSQLEAAQQQR 2710
Cdd:COG4717 439 EELEELEEELEELREELAELEAELEQLEEDG--ELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREERLPP 516
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
867-1197 |
2.91e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.60 E-value: 2.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 867 GEVEENLSKAEQIhqnfVAETNQCISKLQEDAavhqnivaetlatlESKEKELQLLKEKLEAQQTEvqKLNKnnclLEGT 946
Cdd:TIGR02169 180 EEVEENIERLDLI----IDEKRQQLERLRRER--------------EKAERYQALLKEKREYEGYE--LLKE----KEAL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 947 LKELQLLSDTLSSEKKEMNSIISLSKKNIEELTQANEALKEVNE---ALEQEKMNLLQKH-EKITSCIAEQERSIAELSD 1022
Cdd:TIGR02169 236 ERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKkikDLGEEEQLRVKEKiGELEAEIASLERSIAEKER 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1023 QYKQ---ERLQLLQRCEETEAVLEDLRGNYKTAQENNAKLECMLSECTALCENRKNELEQLKETFA------KEQQEFLT 1093
Cdd:TIGR02169 316 ELEDaeeRLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAetrdelKDYREKLE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1094 KLAFAEEQNRKLMLELEIEQQTVRSEITNTNkhsmSATDGLRQECLTLNEEQNEQQNEVSNLTHENEQLMELTQTKHDSY 1173
Cdd:TIGR02169 396 KLKREINELKRELDRLQEELQRLSEELADLN----AAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQEL 471
|
330 340
....*....|....*....|....
gi 189458891 1174 LAvepVENSVKATEDEIGKSSSQY 1197
Cdd:TIGR02169 472 YD---LKEEYDRVEKELSKLQREL 492
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
2210-2405 |
3.16e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.98 E-value: 3.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2210 TERENLAKQLQEKQSRVSELDERcssLRRLLEEKEQARVQMEEdsksamlmLQMQLKELREEVAALcndQETLKAQEQSL 2289
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAE---LDALQAELEELNEEYNE--------LQAELEALQAEIDKL---QAEIAEAEAEI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2290 DQPGEEvhhLKSSIRKLKVHIDADekkhqNILEQLKESKHHADLLkDRVENLEQ------ELILSEKNMIFQAEKSKAEI 2363
Cdd:COG3883 82 EERREE---LGERARALYRSGGSV-----SYLDVLLGSESFSDFL-DRLSALSKiadadaDLLEELKADKAELEAKKAEL 152
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 189458891 2364 QTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERV 2405
Cdd:COG3883 153 EAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAA 194
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
2295-2776 |
3.21e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.55 E-value: 3.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2295 EVHHLKSSIRKLKVHIDADEKKHQNILEQLKESKHHADLLKDRVENLEQEL------ILSEKNMIfqaEKSKAEIQTLKS 2368
Cdd:TIGR04523 34 EEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIkdlndkLKKNKDKI---NKLNSDLSKINS 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2369 EIQRMAQNLQDLQLELISTRSENENLMKELKKEQERVSDLETINSSIENLLKDKEQEKVQMKEEAKITVEMLQTQLKELN 2448
Cdd:TIGR04523 111 EIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNID 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2449 ETVVSLcndqevskTKEQNLGSQVQTLELEKAQLLQDLGEAKNKYIIFQSSVNALTQEVEAGKQKLEKGEKEIRTLK-EQ 2527
Cdd:TIGR04523 191 KIKNKL--------LKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKdEQ 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2528 LKSQEQLVCKLAQVEGeqqlwQKQKLElrnvtmALEQKVQVLQSENNTLQStyEALQNSHKSLESELGLIKLEKVALVER 2607
Cdd:TIGR04523 263 NKIKKQLSEKQKELEQ-----NNKKIK------ELEKQLNQLKSEISDLNN--QKEQDWNKELKSELKNQEKKLEEIQNQ 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2608 VSTISGKEAELQRELRDmLQKTTQLSEDYNKEKNRLTEEVEVLREELQNTKAAHLKSVNQLEKELQRAQGKIKLMLKSCR 2687
Cdd:TIGR04523 330 ISQNNKIISQLNEQISQ-LKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQ 408
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2688 QLEGEKEMLQKELSQLEaAQQQRAGSLVDSNVDEV--MTENKALKETLEEKVKEADKYLDKYCSLLisHEELEKAKEILE 2765
Cdd:TIGR04523 409 QKDEQIKKLQQEKELLE-KEIERLKETIIKNNSEIkdLTNQDSVKELIIKNLDNTRESLETQLKVL--SRSINKIKQNLE 485
|
490
....*....|.
gi 189458891 2766 IEVARLKSRQS 2776
Cdd:TIGR04523 486 QKQKELKSKEK 496
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
2199-2434 |
3.52e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 46.43 E-value: 3.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2199 RIFEL-DLVTVRTERENLAKQLQEKQSRVSELDERCSS----------LRRLLEEKEQARVQMEEDSKSAMLMLQMQLKE 2267
Cdd:PLN02939 151 RLQALeDLEKILTEKEALQGKINILEMRLSETDARIKLaaqekihveiLEEQLEKLRNELLIRGATEGLCVHSLSKELDV 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2268 LREEVAALCNDQETLKAQEQSLDQPGEEVHHL-------KSSIRKLKVH-IDADEkkhqnilEQLKESKHHADLLKDRVE 2339
Cdd:PLN02939 231 LKEENMLLKDDIQFLKAELIEVAETEERVFKLekersllDASLRELESKfIVAQE-------DVSKLSPLQYDCWWEKVE 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2340 NLeQELILSEKNMIFQAEKSKAEIQTLKSEIQRMAQNLQDLQLELIStrSENENLMKE---LKKEQERVSDLEtINSSI- 2415
Cdd:PLN02939 304 NL-QDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFS--SYKVELLQQklkLLEERLQASDHE-IHSYIq 379
|
250 260
....*....|....*....|.
gi 189458891 2416 --ENLLKDKEQEKVQMKEEAK 2434
Cdd:PLN02939 380 lyQESIKEFQDTLSKLKEESK 400
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
2322-2735 |
3.63e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 46.27 E-value: 3.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2322 EQLKESKHHADLLKDRVENLEQELILSEKNMIFQAEKSKAeIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKE 2401
Cdd:pfam05557 66 EAEEALREQAELNRLKKKYLEALNKKLNEKESQLADAREV-ISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLL 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2402 QERVSDLETINSSIE---NLLKDKEQekvqmkeeakitvemlqtQLKELNETVVSLCNDQEVSKTKEQNLGSqVQTLELE 2478
Cdd:pfam05557 145 KAKASEAEQLRQNLEkqqSSLAEAEQ------------------RIKELEFEIQSQEQDSEIVKNSKSELAR-IPELEKE 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2479 KAQLLqdlgEAKNKYIIFQSSVNALTQEVEAGKQKLEKGEKeirtLKEQLKSQEqlvCKLAQVEGEQQLWQK----QKLE 2554
Cdd:pfam05557 206 LERLR----EHNKHLNENIENKLLLKEEVEDLKRKLEREEK----YREEAATLE---LEKEKLEQELQSWVKlaqdTGLN 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2555 LRnVTMALEQKVQVLQSENNTLQSTYEALQNSHKSLESELGLIKLEKVALVERVSTISgKEAELQRELRDMLQKTT---- 2630
Cdd:pfam05557 275 LR-SPEDLSRRIEQLQQREIVLKEENSSLTSSARQLEKARRELEQELAQYLKKIEDLN-KKLKRHKALVRRLQRRVlllt 352
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2631 -------QLSEDYNKEKN------RLTEEVEVLREELQNTKAAHLKSVNQLEKeLQRAQGKIKLMlksCRQLEGEKEMLQ 2697
Cdd:pfam05557 353 kerdgyrAILESYDKELTmsnyspQLLERIEEAEDMTQKMQAHNEEMEAQLSV-AEEELGGYKQQ---AQTLERELQALR 428
|
410 420 430
....*....|....*....|....*....|....*...
gi 189458891 2698 KELSQLEAAQQQRAGSLVDSNVDEVMTENKALKETLEE 2735
Cdd:pfam05557 429 QQESLADPSYSKEEVDSLRRKLETLELERQRLREQKNE 466
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2106-2275 |
3.74e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 3.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2106 QLSSAQEEVHQLRRGIEKLSVRIEADEKK--HLSAVAKLKESQRESDSLKDTVEtlerelersEENQELAILDSEN---- 2179
Cdd:COG4913 618 ELAELEEELAEAEERLEALEAELDALQERreALQRLAEYSWDEIDVASAEREIA---------ELEAELERLDASSddla 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2180 -LKAEVETLKAQKDEMTKSLRIFELDLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQMEEDSKSAM 2258
Cdd:COG4913 689 aLEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELR 768
|
170
....*....|....*..
gi 189458891 2259 LMLQMQLKELREEVAAL 2275
Cdd:COG4913 769 ENLEERIDALRARLNRA 785
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
2206-2473 |
3.86e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 46.27 E-value: 3.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2206 VTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARvQMEEDSKSAMLMLQMQLKELREEVAALCNDQETLKAQ 2285
Cdd:pfam17380 284 VSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKAR-QAEMDRQAAIYAEQERMAMERERELERIRQEERKREL 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2286 EQSLDqpgEEVHHLKSSIRKLKVHIDADEKKHQNILEQLKESKHHADLLKDRVENLEQELILSEKNMIFQAEKSKAEIQT 2365
Cdd:pfam17380 363 ERIRQ---EEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRR 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2366 LKS----EIQRMAQNLQDLQLELISTRSENENLMK---ELKKEQERVSDLETINSSI-ENLLKDKEQEKVQMKEEAKITV 2437
Cdd:pfam17380 440 LEEerarEMERVRLEEQERQQQVERLRQQEEERKRkklELEKEKRDRKRAEEQRRKIlEKELEERKQAMIEEERKRKLLE 519
|
250 260 270
....*....|....*....|....*....|....*.
gi 189458891 2438 EMLQTQLKELNETVVSLCNDQEVSKTKEQNLGSQVQ 2473
Cdd:pfam17380 520 KEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQ 555
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1899-2624 |
4.64e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 46.19 E-value: 4.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1899 DMERELTRIKSEKANIEHHILSvetNLEVVQAEKLCLERdTESKQKVIIDLKEELftvISERNRLREELDNVSKESKALD 1978
Cdd:TIGR00606 367 DSLIQSLATRLELDGFERGPFS---ERQIKNFHTLVIER-QEDEAKTAAQLCADL---QSKERLKQEQADEIRDEKKGLG 439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1979 QMSKKMKEKIEELESHQRESLRHIGAVESEVKDKADLIQTLSFNVGELTKDKAH-----LQEQLQNLQNDSQELSLAIGE 2053
Cdd:TIGR00606 440 RTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNsltetLKKEVKSLQNEKADLDRKLRK 519
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2054 LEIQIGQLNKEKESLVKESQNFQIKLTESECEKQTISKALEVALKEKGEFAVQlSSAQEEVHQLRRGIEKLSVRIeADEK 2133
Cdd:TIGR00606 520 LDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNK-KQLEDWLHSKSKEINQTRDRL-AKLN 597
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2134 KHLSAVAKLKESQRESDSLKDTVETLERELERSEENQELAILDSENLKAEVETLKAQKDEMTKSLRIFELDLVTVRTERE 2213
Cdd:TIGR00606 598 KELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQ 677
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2214 NLA----------KQLQE----KQSRVSELDERCSSLRRLLEEKEQARVQM---EEDSKSAMLMLQMQLKELREEVAALC 2276
Cdd:TIGR00606 678 SCCpvcqrvfqteAELQEfisdLQSKLRLAPDKLKSTESELKKKEKRRDEMlglAPGRQSIIDLKEKEIPELRNKLQKVN 757
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2277 NDQETLKAQEQSLDQPGEEVHHLKSSIRKLKVhidaDEKKHQNILEQLKESKHHADLLKDRVENLEQELILSEKNMIFQA 2356
Cdd:TIGR00606 758 RDIQRLKNDIEEQETLLGTIMPEEESAKVCLT----DVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQE 833
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2357 EKSK-----AEIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERVSDLETINSSIENLLKDKEQEKVQMKE 2431
Cdd:TIGR00606 834 KQHEldtvvSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSP 913
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2432 EAkitvEMLQTQLKELNETVVSLCNDQEVSKTKEQNLGSQVQTLELEKAQLLQDLGEAKNKYII-FQSSVNALTQEVEAG 2510
Cdd:TIGR00606 914 LE----TFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKqKETELNTVNAQLEEC 989
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2511 KQKLEKGEKEIRTLKEQLKSQEQlvcklaqvegeQQLWQKQKLELRNVTMAL-EQKVQVLQSENNTLQSTYEALQNSHKS 2589
Cdd:TIGR00606 990 EKHQEKINEDMRLMRQDIDTQKI-----------QERWLQDNLTLRKRENELkEVEEELKQHLKEMGQMQVLQMKQEHQK 1058
|
730 740 750
....*....|....*....|....*....|....*
gi 189458891 2590 LESELGLIKLEKVALVERVSTISGKEAELQRELRD 2624
Cdd:TIGR00606 1059 LEENIDLIKRNHVLALGRQKGYEKEIKHFKKELRE 1093
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
2212-2429 |
5.46e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.78 E-value: 5.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2212 RENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQMEEDSKSAML-----MLQMQLKELREEVAALCNDQETLKAQ- 2285
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLseeakLLLQQLSELESQLAEARAELAEAEARl 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2286 ---EQSLDQPGEEVHHLKSS--IRKLKVHIDADEKKHQNILEQLKESkhHADL--LKDRVENLEQELilseknmifqAEK 2358
Cdd:COG3206 243 aalRAQLGSGPDALPELLQSpvIQQLRAQLAELEAELAELSARYTPN--HPDViaLRAQIAALRAQL----------QQE 310
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 189458891 2359 SKAEIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERVSDLETINSSIENLLKDKEQEKVQM 2429
Cdd:COG3206 311 AQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEARLAE 381
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
2170-2309 |
5.90e-04 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 45.04 E-value: 5.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2170 QELAILDSENLKAEVETLKAQKDEMTKSLRIFELDLvTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQ 2249
Cdd:COG1566 71 QVLARLDPTDLQAALAQAEAQLAAAEAQLARLEAEL-GAEAEIAAAEAQLAAAQAQLDLAQRELERYQALYKKGAVSQQE 149
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 189458891 2250 MEEdSKSAMLMLQMQLKELREEVAALCND---QETLKAQEQSLDQPGEEVHHLKSSIRKLKVH 2309
Cdd:COG1566 150 LDE-ARAALDAAQAQLEAAQAQLAQAQAGlreEEELAAAQAQVAQAEAALAQAELNLARTTIR 211
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
566-1248 |
6.22e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.40 E-value: 6.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 566 LLKKREHHIDQLNNKLNKIEKEFETllsalelkkkeceeLKEEKNQISFWKIDSEKLINQIESEKEILLGKINHLETSLK 645
Cdd:TIGR04523 27 IANKQDTEEKQLEKKLKTIKNELKN--------------KEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLK 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 646 TqqvspdSNERIRTLEMERENFTVEIKNLQSMLDSKMVEI---KTQKQAYLELQQKSESSDQKHQKEIENMCLKANKLTG 722
Cdd:TIGR04523 93 K------NKDKINKLNSDLSKINSEIKNDKEQKNKLEVELnklEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKK 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 723 QVESLECKLQLLSSEVVTKDQQYQDLRMEYETLRDLL--------KSRGSSLVTNEDNQRSSEDNQRSSEDNQRGSLAFE 794
Cdd:TIGR04523 167 QKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLsnlkkkiqKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTT 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 795 QQPAVSDSFANVMGRKGSINSERSDCSVDGGRSPEHIAILQNRVTSLESSLESQNQmnsdlQMRCEELLQIKGEVEENLS 874
Cdd:TIGR04523 247 EISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNN-----QKEQDWNKELKSELKNQEK 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 875 KAEQIhQNFVAETNQCISKLQEDaavhqniVAETLATLESKEKELQLLKEKLEAQQTEVQKLNKNNcllEGTLKELQlls 954
Cdd:TIGR04523 322 KLEEI-QNQISQNNKIISQLNEQ-------ISQLKKELTNSESENSEKQRELEEKQNEIEKLKKEN---QSYKQEIK--- 387
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 955 dTLSSEKKEMNSIISLSKKNIEELTQANEALKEVNEALEQEKMNLLQKHEKITSCIAEQERSIAELSDQYKqerlQLLQR 1034
Cdd:TIGR04523 388 -NLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIK----NLDNT 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1035 CEETEAVLEDLRGNYKTAQENNAKLECMLSECTALCENRKNELEQLKEtfakEQQEFLTKLAFAEEQNRKLMLE-LEIEQ 1113
Cdd:TIGR04523 463 RESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEE----KVKDLTKKISSLKEKIEKLESEkKEKES 538
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1114 QTVRSEITNTNKHSMSATDGLRQECLTLNEEQNEQQNEVSNLTHENEQLMELTQTKhdsylavepvensvKATEDEIGKS 1193
Cdd:TIGR04523 539 KISDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQK--------------EKEKKDLIKE 604
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*
gi 189458891 1194 SSQYQMDIDTKDISLDSYKAQLVHLEALVRILEVQLDQSEEENKKLHLELQTIRE 1248
Cdd:TIGR04523 605 IEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRN 659
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1926-2772 |
8.23e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 45.17 E-value: 8.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1926 EVVQAEKLCLERDTESKQKVIIDLKE---ELFTVISERNRLRE------ELDNVSKESKA-LDQMSKKMKEKIEELESHQ 1995
Cdd:pfam01576 5 EEMQAKEEELQKVKERQQKAESELKElekKHQQLCEEKNALQEqlqaetELCAEAEEMRArLAARKQELEEILHELESRL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1996 RESLRHIGAVESEVKDKADLIQTLSFNVGELTKDKAHLQEQLQNLQNDSQELSLAIGELEIQIGQLNKEKESLVKESQNF 2075
Cdd:pfam01576 85 EEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERISEF 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2076 QIKLTESECEKQTISKalevaLKEKGEFAvqlssaqeevhqlrrgIEKLSVRIEADEKKHLSAVAKLKESQRESDSLKDT 2155
Cdd:pfam01576 165 TSNLAEEEEKAKSLSK-----LKNKHEAM----------------ISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQ 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2156 VetlerelerseenqelaildsENLKAEVETLKAQKDEMTKSLRIFELDLVTVRTERENLAKQLQEKQSRVSELDERCSS 2235
Cdd:pfam01576 224 I---------------------AELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLES 282
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2236 LRRLLEEKEQARVQMEEdsksamlmlqmQLKELREEvaaLCNDQETLKAQEQSLDQPGEEVHHLKSSI----RKLKVHID 2311
Cdd:pfam01576 283 ERAARNKAEKQRRDLGE-----------ELEALKTE---LEDTLDTTAAQQELRSKREQEVTELKKALeeetRSHEAQLQ 348
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2312 ADEKKHQNILEQLKESKHHADLLKDRVENLEQELILSEKNMIFQAEKSKAEIQTLKSEIQRMAQNLQDLQLELISTRSEN 2391
Cdd:pfam01576 349 EMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQR 428
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2392 ENLMKELKKEQERVSDLETINSSIENLLKDKEQEKVQMKEEAKITVEMLQ----------TQLKELNETVVSLCNDQEVS 2461
Cdd:pfam01576 429 AELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQeetrqklnlsTRLRQLEDERNSLQEQLEEE 508
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2462 KTKEQNLGSQVQTLEL----------EKAQLLQDLGEAKNKYiifQSSVNALTQEVEAGKQKLEKGEKEIRTLKEQLK-- 2529
Cdd:pfam01576 509 EEAKRNVERQLSTLQAqlsdmkkkleEDAGTLEALEEGKKRL---QRELEALTQQLEEKAAAYDKLEKTKNRLQQELDdl 585
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2530 -----SQEQLVCKLaqvEGEQQLWQKQKLELRNVTMALEQKVQVLQSENN-------TLQSTYEALQNSHKSLESELGLI 2597
Cdd:pfam01576 586 lvdldHQRQLVSNL---EKKQKKFDQMLAEEKAISARYAEERDRAEAEAReketralSLARALEEALEAKEELERTNKQL 662
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2598 KLEKVALVERVSTISGKEAELQRELRDMLQKTTQLSEDYNKEKNRLTEEVEVLREELQNTKAAHLKSVNQLEKELQRAQG 2677
Cdd:pfam01576 663 RAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEVNMQALKAQFERDLQARDEQGEE 742
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2678 KIKLMLKSCRQLEGEKEMLQKELSQLEAAQQQRAGSLVDSNV---------DEVMTENKALKETLEEKVKEADKYLDKYC 2748
Cdd:pfam01576 743 KRRQLVKQVRELEAELEDERKQRAQAVAAKKKLELDLKELEAqidaankgrEEAVKQLKKLQAQMKDLQRELEEARASRD 822
|
890 900
....*....|....*....|....
gi 189458891 2749 SLLISHEELEKAKEILEIEVARLK 2772
Cdd:pfam01576 823 EILAQSKESEKKLKNLEAELLQLQ 846
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
627-1364 |
8.49e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.05 E-value: 8.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 627 ESEKEILLGKINHLETSLKTQQVSPDSNERIR---TLEMERENFTVEIKNLQ-SMLDSKMVEIKTQKQAYLELQQKSESS 702
Cdd:TIGR02168 224 ELELALLVLRLEELREELEELQEELKEAEEELeelTAELQELEEKLEELRLEvSELEEEIEELQKELYALANEISRLEQQ 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 703 DQKHQKEIENMCLKANKLTGQVESLECKLQLLSSEVVTKDQQYQDLRMEYETLRDLLKsrgsslvtnednqrssEDNQRS 782
Cdd:TIGR02168 304 KQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELE----------------ELEAEL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 783 SEDNQRGSLAFEQQPAVSDSFANVMGRKGSINSERSDCSVDGGRSPEHIAILQNRVTSLESSLESQNQmnSDLQMRCEEL 862
Cdd:TIGR02168 368 EELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAEL--KELQAELEEL 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 863 LQIKGEVEENLSKAEQIHQNFVAETNQCISKLQEdaavhqniVAETLATLESKEKELQLLKEKLEAQQTEVQKLNKNNCL 942
Cdd:TIGR02168 446 EEELEELQEELERLEEALEELREELEEAEQALDA--------AERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSG 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 943 LEGTLkelQLLSDTLSSEKK-----------EMNSIISlskKNIEELTQANEALKEVNE--------------ALEQEKM 997
Cdd:TIGR02168 518 LSGIL---GVLSELISVDEGyeaaieaalggRLQAVVV---ENLNAAKKAIAFLKQNELgrvtflpldsikgtEIQGNDR 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 998 NLLQKHEKITSCIAEQERSIAELSDQYkQERLQLLQRCEETEAVLEDLRgnYKTAQENNAKLECML-----------SEC 1066
Cdd:TIGR02168 592 EILKNIEGFLGVAKDLVKFDPKLRKAL-SYLLGGVLVVDDLDNALELAK--KLRPGYRIVTLDGDLvrpggvitggsAKT 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1067 TALCENRKNELEQLKEtfakeqqefltKLAFAEEQNRklmlELEIEQQTVRSEITNTNKhsmsATDGLRQECLTLNEEQN 1146
Cdd:TIGR02168 669 NSSILERRREIEELEE-----------KIEELEEKIA----ELEKALAELRKELEELEE----ELEQLRKELEELSRQIS 729
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1147 EQQNEVSNLTHENEQLMELTQTKHdsyLAVEPVENSVKATEDEIGKSSSQyqmdidtkdisLDSYKAQLVHLEALVRILE 1226
Cdd:TIGR02168 730 ALRKDLARLEAEVEQLEERIAQLS---KELTELEAEIEELEERLEEAEEE-----------LAEAEAEIEELEAQIEQLK 795
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1227 VQLDQSEEENKKLHLELQTIREELETKSSQDPQSQARtgLKDCDTAEEKYVSMLQELSASQNENAHLQCSLQTAVNKLNE 1306
Cdd:TIGR02168 796 EELKALREALDELRAELTLLNEEAANLRERLESLERR--IAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELES 873
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*...
gi 189458891 1307 lgkMCDVLRVEKLQLESELNDSRTEcitaTSQMTAEVEKLVSEMKMLNHESALSQNEL 1364
Cdd:TIGR02168 874 ---ELEALLNERASLEEALALLRSE----LEELSEELRELESKRSELRRELEELREKL 924
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
19-629 |
8.56e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.11 E-value: 8.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 19 KIQELEGQLEKLKKEKQQRqfqldsLEAALQKQKQKVED----------GKTEGADLKREN----QRLMEICEHLEKSRQ 84
Cdd:pfam15921 239 RIFPVEDQLEALKSESQNK------IELLLQQHQDRIEQliseheveitGLTEKASSARSQansiQSQLEIIQEQARNQN 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 85 KL-SHELQVKESQVNLQESQLSSCKK----QIEKLEQELKRCKSEF-ERSQQVAQSADVSLNPCSTPQKLFAT------- 151
Cdd:pfam15921 313 SMyMRQLSDLESTVSQLRSELREAKRmyedKIEELEKQLVLANSELtEARTERDQFSQESGNLDDQLQKLLADlhkreke 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 152 --------------PLTPSSTYEDLKEKYNKEVEERKRLEEEVKALHAKkvslpvSQATMNHRDIARHQASSSVfpwqqe 217
Cdd:pfam15921 393 lslekeqnkrlwdrDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSE------CQGQMERQMAAIQGKNESL------ 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 218 ntpSRLSSdaLKTPLRRDGSAAHFLGEEVSPNKSSMKTGRGDCSSLPGEPHSAQllHQAKAQNQDLKSKMTELELRLQgQ 297
Cdd:pfam15921 461 ---EKVSS--LTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKE--RAIEATNAEITKLRSRVDLKLQ-E 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 298 EKEMRSQVNKCQDLQLQLEKTKVELIEKERILNKTRDEVVRSTAQYDQAAAKCTTLEQKLKTLTEELSCHRQNAESAKRS 377
Cdd:pfam15921 533 LQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKIL 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 378 LEQRikekekelqeelsrqhqsfqalDSEYTQMKTRLTQ-ELQQVKHLHSTLQlELEKVTSVKQQLERNLEEIRLKLSRA 456
Cdd:pfam15921 613 KDKK----------------------DAKIRELEARVSDlELEKVKLVNAGSE-RLRAVKDIKQERDQLLNEVKTSRNEL 669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 457 EQALQASQVAENELRRSSEEMKKENSLIRSQSEQRTREVCHLEEELGKVKVSLSKSQNFAEEMKAKNTSQEIMLRDLQEK 536
Cdd:pfam15921 670 NSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSK 749
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 537 LNQQENSLTleklklalaDLERQRNCSQDLLKKREHHIDQLNNKLNKIEKEFETLLSALELKKKECEELKEEKNQISFWK 616
Cdd:pfam15921 750 IQFLEEAMT---------NANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQF 820
|
650
....*....|...
gi 189458891 617 IDSEKLINQIESE 629
Cdd:pfam15921 821 AECQDIIQRQEQE 833
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
2133-2628 |
9.11e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.76 E-value: 9.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2133 KKHLSAVAKLKESQRESDSLKDTVETLERELERSEENQElailDSENLKAEVETLKAQKDEMTKSLRIFELDLvtvrtER 2212
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEE----ELEELEAELEELREELEKLEKLLQLLPLYQ-----EL 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2213 ENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVqmeedsksamlmlqmQLKELREEVAALCndQETLKAQEQSLDQP 2292
Cdd:COG4717 135 EALEAELAELPERLEELEERLEELRELEEELEELEA---------------ELAELQEELEELL--EQLSLATEEELQDL 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2293 GEEVHHLKSSIRKLKVHIDADEKKHQNILEQLKEskhhadlLKDRVENLEQELILSEKNMIFQAEKSKAEIQTLKSEIQR 2372
Cdd:COG4717 198 AEELEELQQRLAELEEELEEAQEELEELEEELEQ-------LENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLS 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2373 MAQNLQDLQLELISTRSENENLMKELKKEQERVSDLETINSSIENLlkdKEQEKVQMKEEAKITVEMLQTQLKELNETVV 2452
Cdd:COG4717 271 LILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEEL---EEEELEELLAALGLPPDLSPEELLELLDRIE 347
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2453 SLcnDQEVSKTKEQNLGSQVQTLELEKAQLLQDLGeaknkyiifQSSVNALTQEVEAgKQKLEKGEKEIRTLKEQLKSQE 2532
Cdd:COG4717 348 EL--QELLREAEELEEELQLEELEQEIAALLAEAG---------VEDEEELRAALEQ-AEEYQELKEELEELEEQLEELL 415
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2533 QLVCKLAQVEGEQQLwqKQKLElrnvtmALEQKVQVLQSENNTLQSTYEALQNSHKSLESElgliklekvalvERVSTIS 2612
Cdd:COG4717 416 GELEELLEALDEEEL--EEELE------ELEEELEELEEELEELREELAELEAELEQLEED------------GELAELL 475
|
490
....*....|....*.
gi 189458891 2613 GKEAELQRELRDMLQK 2628
Cdd:COG4717 476 QELEELKAELRELAEE 491
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
4-772 |
9.15e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.96 E-value: 9.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 4 ALEEWKEGLPSRALQKIQELEGQLEKLKKEKQQRQFQLDSLEAALQKQKQKVEDGKTEGADLKRENQrlmeicEHLEKSR 83
Cdd:pfam02463 317 KESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLES------ERLSSAA 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 84 QKLSHELQVKESQVNLQESQLSSCKKQIEKLEQELKRCKSEFERSQQVAQSADVSLNPCSTPQKLFATPLTPSSTYEDLK 163
Cdd:pfam02463 391 KLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKS 470
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 164 EKYNKEVEERKRLEEEVKALHAKKVSLPVSQATMNHRDIARHQASSSVFPWQQENTPSRLSSDALKTPLRRDGSAAHFLG 243
Cdd:pfam02463 471 EDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVI 550
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 244 EEVSPNKSSMKTGRGDCSSLPGEPHSAQLLHQAKAQNQDLKSKMTELELRLQGQEKEMRSQVNKCQDLQLQLEKTKVELI 323
Cdd:pfam02463 551 VEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILK 630
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 324 EKERILNKTRDEVVRSTAQYDQAAAKCTTLEQKLKTLTEELschrqnAESAKRSLEQRIKEKEKELQEELSRQHQSFQAL 403
Cdd:pfam02463 631 DTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSEL------TKELLEIQELQEKAESELAKEEILRRQLEIKKK 704
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 404 DSEYTQMKTRLTQELQQVKHLHSTLQLELEKVTSVKQQLERNLEEIRLKLSRAEQALQASQVAENELRRSSEEMKKENSL 483
Cdd:pfam02463 705 EQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTE 784
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 484 IRSQSEQRTREVCHLEEELgkvkvslsksqnfaEEMKAKNTSQEIMLRDLQEKLNQQENSLTLEKLKLALADLERQRNCS 563
Cdd:pfam02463 785 KLKVEEEKEEKLKAQEEEL--------------RALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEK 850
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 564 QDLLKKREHHIDQLNNKLNKIEKEFETLLSALELKKKECEELKEEKNQISFWKIDSEKLINQIESEKEILLGKINHLETS 643
Cdd:pfam02463 851 LAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEIL 930
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 644 LKTQQVSPD-SNERIRTLEMERENFTVEIKNLQSMLDSKMVEIKTQKQAYLELQQKSESSDQKHQKEIEnmcLKANKLTG 722
Cdd:pfam02463 931 LKYEEEPEElLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKER---LEEEKKKL 1007
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|
gi 189458891 723 QVESLECKLQLLSSEVVTKDQQYQDLRMEYEtlRDLLKSRGSSLVTNEDN 772
Cdd:pfam02463 1008 IRAIIEETCQRLKEFLELFVSINKGWNKVFF--YLELGGSAELRLEDPDD 1055
|
|
| CagA_N |
pfam18971 |
CagA protein; The Helicobacter pylori type IV secretion effector CagA is a major bacterial ... |
2006-2452 |
9.29e-04 |
|
CagA protein; The Helicobacter pylori type IV secretion effector CagA is a major bacterial virulence determinant and critical for gastric carcinogenesis. X-ray crystallographic analysis of the N-terminal CagA fragment (residues 1-876) revealed that the region has a structure comprised of three discrete domains. Domain I constitutes a mobile CagA N terminus, while Domain II tethers CagA to the plasma membrane by interacting with membrane phosphatidylserine. Domain III interacts intramolecularly with the intrinsically disordered C-terminal region, and this interaction potentiates the pathogenic scaffold/hub function of CagA.
Pssm-ID: 408741 [Multi-domain] Cd Length: 876 Bit Score: 45.15 E-value: 9.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2006 ESEVKDKADLIQTLSFNVGEL----TKDKAHLQEQLQNLQNDSQELSLAIGELEIQ-IGQLNKEKESLVKESQNFQIKLT 2080
Cdd:pfam18971 395 QEEIRNKVDFMEFLAQNNTKLdnlsEKEKEKFQNEIEDFQKDSKAYLDALGNDRIAfVSKKDTKHSALITEFNNGDLSYT 474
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2081 ESECEKQTiSKALEV--------ALKEKGEFAVQLSS---------------AQEEVHQLRRGIEKLSV---------RI 2128
Cdd:pfam18971 475 LKDYGKKA-DKALDReknvtlqgSLKHDGVMFVDYSNfkytnasknpnkgvgATNGVSHLEAGFNKVAVfnlpdlnnlAI 553
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2129 EADEKKHLSAVAKLKE-SQRESDSLKDTVETLERELERSEENQELAILDSENLKAEVETLKAQKDeMTKSLRifeldlvt 2207
Cdd:pfam18971 554 TSFVRRNLENKLTAKGlSLQEANKLIKDFLSSNKELAGKALNFNKAVAEAKSTGNYDEVKKAQKD-LEKSLR-------- 624
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2208 vrtERENLAKQLQEKQsrvseldERCSSLRRLLEEKEQARVQMEEdsksamlMLQMQLKELREEVAALCNDQETLKAQEQ 2287
Cdd:pfam18971 625 ---KREHLEKEVEKKL-------ESKSGNKNKMEAKAQANSQKDE-------IFALINKEANRDARAIAYTQNLKGIKRE 687
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2288 ---SLDQPGEEVHHLKSSIRKLKVHIDADEKKHQNILEQLKESKHHADLLKD---RVENLEQEliLSEknmiFQAEKSK- 2360
Cdd:pfam18971 688 lsdKLEKISKDLKDFSKSFDEFKNGKNKDFSKAEETLKALKGSVKDLGINPEwisKVENLNAA--LNE----FKNGKNKd 761
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2361 -AEIQTLKSEIQRMAQNLqdLQLELISTRSENENLMKELKKEQERVSDLETINSSIENLLKDKEQEKVQMKEEAKI--TV 2437
Cdd:pfam18971 762 fSKVTQAKSDLENSVKDV--IINQKVTDKVDNLNQAVSVAKAMGDFSRVEQVLADLKNFSKEQLAQQAQKNEDFNTgkNS 839
|
490
....*....|....*
gi 189458891 2438 EMLQTQLKELNETVV 2452
Cdd:pfam18971 840 ELYQSVKNSVNKTLV 854
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
1761-2781 |
9.62e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 45.04 E-value: 9.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1761 MDVLEDQGSIQNLQLQKDTLNENLRLLPEvedwdKKVESLLNEIMEADSKLSLQEVQLKMKIATCI--QLEKIVKDLRKE 1838
Cdd:TIGR01612 689 IDNTEDKAKLDDLKSKIDKEYDKIQNMET-----ATVELHLSNIENKKNELLDIIVEIKKHIHGEInkDLNKILEDFKNK 763
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1839 KADLSEKLE--SLPCNQEVCLRVERSEEDLGFNLDMGANELLSKSTKDNATNTEDnYKEKFLDMERELTRIKSEKANIEH 1916
Cdd:TIGR01612 764 EKELSNKINdyAKEKDELNKYKSKISEIKNHYNDQINIDNIKDEDAKQNYDKSKE-YIKTISIKEDEIFKIINEMKFMKD 842
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1917 HILS---VETNLEVVQAEKLCLERD--TESKQKVIIDLKEELF-----------TVISERNR-LREELDNVS--KESKAL 1977
Cdd:TIGR01612 843 DFLNkvdKFINFENNCKEKIDSEHEqfAELTNKIKAEISDDKLndyekkfndskSLINEINKsIEEEYQNINtlKKVDEY 922
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1978 DQMSKKMKEKIEELESHQR----------ESLRHIGAVESEVKDKADliQTLSFNVGELtkDKAHLQEQLQNLQNDSQEL 2047
Cdd:TIGR01612 923 IKICENTKESIEKFHNKQNilkeilnkniDTIKESNLIEKSYKDKFD--NTLIDKINEL--DKAFKDASLNDYEAKNNEL 998
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2048 slaigeleiqIGQLNKEKESLVKESQN-FQIKLTESECEKQTISKALEVALKEKG--EFAVQLS--SAQEEVHQL-RRGI 2121
Cdd:TIGR01612 999 ----------IKYFNDLKANLGKNKENmLYHQFDEKEKATNDIEQKIEDANKNIPniEIAIHTSiyNIIDEIEKEiGKNI 1068
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2122 EKLSVRIEADEKKHLSAVAKLKESQR-----------------ESDSLKDTVETLERELERSEENQELAILDSEN----L 2180
Cdd:TIGR01612 1069 ELLNKEILEEAEINITNFNEIKEKLKhynfddfgkeenikyadEINKIKDDIKNLDQKIDHHIKALEEIKKKSENyideI 1148
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2181 KAEVETL-----KAQKDEMTKSLRIFELDLVTVRTERENLAKQLQEKQSRVSELDERCSSLRR--------------LLE 2241
Cdd:TIGR01612 1149 KAQINDLedvadKAISNDDPEEIEKKIENIVTKIDKKKNIYDEIKKLLNEIAEIEKDKTSLEEvkginlsygknlgkLFL 1228
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2242 EKEQARVQMEEDSKSAMLMLQMQLKELREEVAALCND---QETLKAQEQSLD--QPGEEVHHLKSS--------IRKLKV 2308
Cdd:TIGR01612 1229 EKIDEEKKKSEHMIKAMEAYIEDLDEIKEKSPEIENEmgiEMDIKAEMETFNisHDDDKDHHIISKkhdenisdIREKSL 1308
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2309 HIDADEKKHQNILEQLKESKHHadLLKDRVENLEQELILSE-KNM--IFQAEKSKAEIQTLKSEIQRMAQNLQDLQLELi 2385
Cdd:TIGR01612 1309 KIIEDFSEESDINDIKKELQKN--LLDAQKHNSDINLYLNEiANIynILKLNKIKKIIDEVKEYTKEIEENNKNIKDEL- 1385
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2386 strSENENLMKELKKEqervSDLETINSSIENLLKDKE-QEKVQMKEEAKITVEMLQTQL-------KELNETVVSLCND 2457
Cdd:TIGR01612 1386 ---DKSEKLIKKIKDD----INLEECKSKIESTLDDKDiDECIKKIKELKNHILSEESNIdtyfknaDENNENVLLLFKN 1458
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2458 QEVSKTKEQN-LGSQVQTLELEKAQLLQDLGEAKNKYIIFQSSVNALTQEVEAGKQKLEKGEKEIRTLKEQLkSQEQLVC 2536
Cdd:TIGR01612 1459 IEMADNKSQHiLKIKKDNATNDHDFNINELKEHIDKSKGCKDEADKNAKAIEKNKELFEQYKKDVTELLNKY-SALAIKN 1537
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2537 KLAQVEGEQQLWQKQKLELRNVTM----ALEQKVQVLQSENNTLQstyEALQNSHKSLESELGlIKLEkvalVERVSTIS 2612
Cdd:TIGR01612 1538 KFAKTKKDSEIIIKEIKDAHKKFIleaeKSEQKIKEIKKEKFRIE---DDAAKNDKSNKAAID-IQLS----LENFENKF 1609
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2613 GKEAELQRELRDMLQKTtqlsEDYNKEKNRLTEevevlreelqNTKAAHLKSVNQLEKELQRaqgkiklMLKSCRQLEGE 2692
Cdd:TIGR01612 1610 LKISDIKKKINDCLKET----ESIEKKISSFSI----------DSQDTELKENGDNLNSLQE-------FLESLKDQKKN 1668
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2693 KEMLQKELSQLEaaqqqragSLVDSNVDEVMTENKALKETLEEKVKEADKyldkycsllISHEELEKAKEILEIEVARLK 2772
Cdd:TIGR01612 1669 IEDKKKELDELD--------SEIEKIEIDVDQHKKNYEIGIIEKIKEIAI---------ANKEEIESIKELIEPTIENLI 1731
|
....*....
gi 189458891 2773 SRQSRQDLQ 2781
Cdd:TIGR01612 1732 SSFNTNDLE 1740
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1957-2129 |
1.01e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1957 ISERNRLREELDNVSKESKALDQMSKKMKEKIEELESHQ--RESLRHIGAVESEVKDKADLIQTLSFNVGELtkdkAHLQ 2034
Cdd:COG4913 616 EAELAELEEELAEAEERLEALEAELDALQERREALQRLAeySWDEIDVASAEREIAELEAELERLDASSDDL----AALE 691
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2035 EQLQNLQNDSQELSLAIGELEIQIGQLNKEKESLVKESQNFQIKLTE-SECEKQTISKALEVALKEKGEFAVQ---LSSA 2110
Cdd:COG4913 692 EQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAaEDLARLELRALLEERFAAALGDAVErelRENL 771
|
170
....*....|....*....
gi 189458891 2111 QEEVHQLRRGIEKLSVRIE 2129
Cdd:COG4913 772 EERIDALRARLNRAEEELE 790
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
2110-2782 |
1.07e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.96 E-value: 1.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2110 AQEEVHQLRRGIEKLSVRIEADEKKHLSAVAKLKESQRESDSLKDTVETLERE--LERSEENQELAILDSENLKAEVETL 2187
Cdd:pfam02463 174 ALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLlyLDYLKLNEERIDLLQELLRDEQEEI 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2188 KAQKDEMTKSlrifeldlvtvrterenlakqlQEKQSRVSELDERCSSLRRLLEEKEQARVQMEEDSKSAMLMLQMQLKE 2267
Cdd:pfam02463 254 ESSKQEIEKE----------------------EEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVD 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2268 LREEVAALCNDQETLKAQEQSLDQPGEEVHH-LKSSIRKLKVHIDADEKKHQNILEQLKESKHHADLLKDRVENLEQELI 2346
Cdd:pfam02463 312 DEEKLKESEKEKKKAEKELKKEKEEIEELEKeLKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAK 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2347 LSEKNMIFQAEKSKA--EIQTLKSEIQRMAQNLQDLQL-ELISTRSENENLMKELKKEQERVSDLETINSSIENLLKDKE 2423
Cdd:pfam02463 392 LKEEELELKSEEEKEaqLLLELARQLEDLLKEEKKEELeILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSE 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2424 QEKVQMKEEAKITVEMLQTQLKELNETVVSLCNDQEVSKTKEQNLGSQVQTLELEKAQLLQDLGEAKNKY-------IIF 2496
Cdd:pfam02463 472 DLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYkvaistaVIV 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2497 QSSVNALTQEVEAGKQKLEKGEKEIRTLKEQLKSQEQLVCKLAQVEGEQQLWQKQKLELRNVTMALEQKVQVLQSENNTL 2576
Cdd:pfam02463 552 EVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKD 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2577 QSTYEALQNSHKSLESELGLIKLEKVALVERVSTISGKEAELQRELRDMLQKTTQLSEDYNKEKNRLTEEVEVLREELQN 2656
Cdd:pfam02463 632 TELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEE 711
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2657 TKAAHLKSVNQLEKELQRAQGKIKLMLKSCRQLEGEKEMLQKELSQLEAAQQQRAGSLVDSNVDEVMTENKALKETLEEK 2736
Cdd:pfam02463 712 LKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEE 791
|
650 660 670 680
....*....|....*....|....*....|....*....|....*.
gi 189458891 2737 VKEADKYLDkycsllishEELEKAKEILEIEVARLKSRQSRQDLQS 2782
Cdd:pfam02463 792 KEEKLKAQE---------EELRALEEELKEEAELLEEEQLLIEQEE 828
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
2288-2401 |
1.27e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 44.69 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2288 SLDQPGEEVHHLKSSIRKLKVHIDADEKkhqnilEQLKESKHHADLLKDRVENLEQEliLSEKNMIFQAEKSK-AEIQTL 2366
Cdd:COG0542 405 EIDSKPEELDELERRLEQLEIEKEALKK------EQDEASFERLAELRDELAELEEE--LEALKARWEAEKELiEEIQEL 476
|
90 100 110
....*....|....*....|....*....|....*
gi 189458891 2367 KSEIQRMAQNLQDLQLELISTRSENENLMKELKKE 2401
Cdd:COG0542 477 KEELEQRYGKIPELEKELAELEEELAELAPLLREE 511
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1899-2643 |
1.28e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 44.40 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1899 DMERELTRIKSEKANIEHHILSVETNLEVVQAEKLCLER---DTESKQKVIIDLKEELFTVISERNRLREEL-DNVSKES 1974
Cdd:pfam01576 360 ELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQakqDSEHKRKKLEGQLQELQARLSESERQRAELaEKLSKLQ 439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1975 KALDQMSKKMkekiEELESHQRESLRHIGAVESEVKDKADLIQ-------TLSFNVGELTKDKAHLQEQLQNLQNDSQEL 2047
Cdd:pfam01576 440 SELESVSSLL----NEAEGKNIKLSKDVSSLESQLQDTQELLQeetrqklNLSTRLRQLEDERNSLQEQLEEEEEAKRNV 515
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2048 SLAIGELEIQIGQLNKE--------------KESLVKESQNFQIKLTESECEKQTISKALEVALKEKGEFAVQLSSAQEE 2113
Cdd:pfam01576 516 ERQLSTLQAQLSDMKKKleedagtlealeegKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQL 595
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2114 VHQLRRGIEKLSVRIEadEKKHLSAVAKLKESQRESDSLKDTVETLERELERSEENQELAILDSEN--LKAEVETLKAQK 2191
Cdd:pfam01576 596 VSNLEKKQKKFDQMLA--EEKAISARYAEERDRAEAEAREKETRALSLARALEEALEAKEELERTNkqLRAEMEDLVSSK 673
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2192 D-------EMTKSLRIFELDLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQMEEDSKSAmlmLQMQ 2264
Cdd:pfam01576 674 DdvgknvhELERSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEVNMQALKAQFERDLQARDEQGEEKRRQ---LVKQ 750
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2265 LKELREEVaalcNDQETLKAQEQSLDQpgeevhHLKSSIRKLKVHIDADEKKHQNILEQLKESKHHadlLKDRVENLEqE 2344
Cdd:pfam01576 751 VRELEAEL----EDERKQRAQAVAAKK------KLELDLKELEAQIDAANKGREEAVKQLKKLQAQ---MKDLQRELE-E 816
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2345 LILSEKNMIFQAEKSKAEIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERVSDLETINSSIENLLKDKEQ 2424
Cdd:pfam01576 817 ARASRDEILAQSKESEKKLKNLEAELLQLQEDLAASERARRQAQQERDELADEIASGASGKSALQDEKRRLEARIAQLEE 896
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2425 EKvqmkEEAKITVEMLQTQLKELNETVVSLCNDQEVSKTKEQNLGSQVQTLELEKAQLLQDLGE----AKNKYiifQSSV 2500
Cdd:pfam01576 897 EL----EEEQSNTELLNDRLRKSTLQVEQLTTELAAERSTSQKSESARQQLERQNKELKAKLQEmegtVKSKF---KSSI 969
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2501 NALTQEVEAGKQKLEKGEKE-IRTLKEQLKSQEQLVCKLAQVEGEQQLWQKQKLELRNVTMALEQ-KVQVLQSEnntlqs 2578
Cdd:pfam01576 970 AALEAKIAQLEEQLEQESRErQAANKLVRRTEKKLKEVLLQVEDERRHADQYKDQAEKGNSRMKQlKRQLEEAE------ 1043
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 189458891 2579 tyealqnshksleselgliklekvalvERVSTISGKEAELQRELRDMLQKTTQLSEDYNKEKNRL 2643
Cdd:pfam01576 1044 ---------------------------EEASRANAARRKLQRELDDATESNESMNREVSTLKSKL 1081
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2104-2350 |
1.51e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 1.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2104 AVQLSSAQEEVHQLRRGIEKLSVRIEADEKKHLSAVAKLKESQRESDSLKDTVETLERELErsEENQELAILDSENLKAE 2183
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELA--ALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2184 vETLKAQKDEMTKSLRifeldlVTVRTERENLAKQLQeKQSRVSELDERCSSLRRLLEEKEQARVQMEEDSKSamlmLQM 2263
Cdd:COG4942 97 -AELEAQKEELAELLR------ALYRLGRQPPLALLL-SPEDFLDAVRRLQYLKYLAPARREQAEELRADLAE----LAA 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2264 QLKELREEVAALCNDQETLKAQEQSLDQpgeevhhLKSSIRKLKVHIDADEKKHQNILEQLKESkhhADLLKDRVENLEQ 2343
Cdd:COG4942 165 LRAELEAERAELEALLAELEEERAALEA-------LKAERQKLLARLEKELAELAAELAELQQE---AEELEALIARLEA 234
|
....*..
gi 189458891 2344 ELILSEK 2350
Cdd:COG4942 235 EAAAAAE 241
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
2087-2525 |
1.52e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.99 E-value: 1.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2087 QTISKALEVALKEKGEFAVQLSSAQEEVHQLRRGIEKLSVRIEADEKKHLSAVAKLKESQRESDSLKDTVETLERELERS 2166
Cdd:COG4717 49 ERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLL 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2167 EENQELaildsENLKAEVETLKAQKDEMTKSLRifelDLVTVRTERENLAKQLQEKQSRVSELDERCS-----SLRRLLE 2241
Cdd:COG4717 129 PLYQEL-----EALEAELAELPERLEELEERLE----ELRELEEELEELEAELAELQEELEELLEQLSlateeELQDLAE 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2242 EKEQARVQMEEdSKSAMLMLQMQLKELREEVAALCNDQETLKAQEQ---------------SLDQPGEEVHHLKSSIRKL 2306
Cdd:COG4717 200 ELEELQQRLAE-LEEELEEAQEELEELEEELEQLENELEAAALEERlkearlllliaaallALLGLGGSLLSLILTIAGV 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2307 -----------KVHIDADEKKHQNILEQLKESKHHADLLKDRVENLEQELILSEKNMIFQAEKSKAEIQTLKSEIQRMAQ 2375
Cdd:COG4717 279 lflvlgllallFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEE 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2376 nlQDLQLELISTRSENENLMKELKkeqerVSDLETINSSIENLlkdkeQEKVQMKEEAKITVEMLQTQLKELNETVVSLc 2455
Cdd:COG4717 359 --LEEELQLEELEQEIAALLAEAG-----VEDEEELRAALEQA-----EEYQELKEELEELEEQLEELLGELEELLEAL- 425
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 189458891 2456 nDQEVSKTKEQNLGSQVQTLELEKAQLLQDLGEAKN--KYIIFQSSVNALTQEVEAGKQKLEKGEKEIRTLK 2525
Cdd:COG4717 426 -DEEELEEELEELEEELEELEEELEELREELAELEAelEQLEEDGELAELLQELEELKAELRELAEEWAALK 496
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
303-514 |
1.52e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 1.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 303 SQVNKCQDLQLQLEKTKVELIEKERILNKTR-------DEVVRSTAQYDQAAAKCTTLEQKLKTLTEELSCHRQNAESAK 375
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKkeekallKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 376 RSLEQRIKEKEKELQEELSRQHQSFQAL-----DSEYTQMKTRLTQEL-QQVKHLHSTLQLELEKVTSVKQQLERNLEEI 449
Cdd:COG4942 97 AELEAQKEELAELLRALYRLGRQPPLALllspeDFLDAVRRLQYLKYLaPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 189458891 450 RLKLSRAEQALQASQVAENELRRSSEEMKKENSLIRSQSEQRTREVCHLEEELGKVKVSLSKSQN 514
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1922-2111 |
1.58e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.67 E-value: 1.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1922 ETNLEVVQAEKLCLERDTESKQKVIIDLKEELFTVISERNRLREELDNVSKESKAL----DQMSKKMKEKIEELESHQRE 1997
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLqaeiAEAEAEIEERREELGERARA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1998 S----------------------LRHIGAVESEVKDKADLIQTLSFNVGELTKDKAHLQEQLQNLQNDSQELSLAIGELE 2055
Cdd:COG3883 95 LyrsggsvsyldvllgsesfsdfLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELE 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 189458891 2056 IQIGQLNKEKESLVKESQNFQIKLTESECEKQTISKALEVALKEKGEFAVQLSSAQ 2111
Cdd:COG3883 175 AQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAA 230
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2178-2409 |
1.65e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 1.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2178 ENLKAEVETLKAQKDEMTKSLRIFELDLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQmeedsksa 2257
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE-------- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2258 mlmLQMQLKELREEVAALcndqetLKAQEQSLDQP-------GEEVHHLKSSIRKLKVHIDADekkhQNILEQLKESkhh 2330
Cdd:COG4942 95 ---LRAELEAQKEELAEL------LRALYRLGRQPplalllsPEDFLDAVRRLQYLKYLAPAR----REQAEELRAD--- 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 189458891 2331 adllKDRVENLEQELILSEKNMIFQAEKSKAEIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERVSDLE 2409
Cdd:COG4942 159 ----LAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLE 233
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
2362-2643 |
1.86e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 43.89 E-value: 1.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2362 EIQtLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERVSDLETInssIENLlkdkeqekvqmkeeAKITVEmLQ 2441
Cdd:PRK10929 25 EKQ-ITQELEQAKAAKTPAQAEIVEALQSALNWLEERKGSLERAKQYQQV---IDNF--------------PKLSAE-LR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2442 TQLKELNETVVSLCNDQEVSKTKEQNLgsQVQTLELEKAQLLQdlgEAKNKYIIFQSSVNALTQEVEAGKQKLEKGEKEI 2521
Cdd:PRK10929 86 QQLNNERDEPRSVPPNMSTDALEQEIL--QVSSQLLEKSRQAQ---QEQDRAREISDSLSQLPQQQTEARRQLNEIERRL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2522 RTLKEQLKSQEQLVCKLAQVEGEQQLWQKQKLELRNVTMALEQKVQVLQSEnnTLQSTYEALQNSHKSLESELGLIKLEK 2601
Cdd:PRK10929 161 QTLGTPNTPLAQAQLTALQAESAALKALVDELELAQLSANNRQELARLRSE--LAKKRSQQLDAYLQALRNQLNSQRQRE 238
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 189458891 2602 VAL-VERVSTISGKEAELQRELRDMLQKTTQLSEDYNKEKNRL 2643
Cdd:PRK10929 239 AERaLESTELLAEQSGDLPKSIVAQFKINRELSQALNQQAQRM 281
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
2512-2715 |
2.01e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.60 E-value: 2.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2512 QKLEKGEKEIRTLKEQLKSQEQLVCKLAQVEGEQQLWQKQKLELRNVTMALEQKVQVLQsenntlqstyeaLQNSHKSLE 2591
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLP------------LYQELEALE 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2592 SELGLIKLEKVALVERVSTIsgkeAELQRELRDMLQKTTQLSEDYNKEKNRLTEEVEVLREELQNTKAAHLKSVNQLEKE 2671
Cdd:COG4717 139 AELAELPERLEELEERLEEL----RELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEE 214
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 189458891 2672 LQRAQGKIKLMLKSCRQLEGEKEMLQKELSQLEAAQQQRAGSLV 2715
Cdd:COG4717 215 LEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAAL 258
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
861-1065 |
2.16e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.28 E-value: 2.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 861 ELLQIKGEVEENLSKAEQIhQNFVAETNQCISKLQEDAAVHQNIVAETLATLESKEKELQLLKEKLEAQQTEVQKLNKN- 939
Cdd:COG3883 17 QIQAKQKELSELQAELEAA-QAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARAl 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 940 ----------NCLLEGT-----LKELQLLSDTLSSEKKEMNSIislsKKNIEELTQANEALKEVNEALEQEKMNLLQKHE 1004
Cdd:COG3883 96 yrsggsvsylDVLLGSEsfsdfLDRLSALSKIADADADLLEEL----KADKAELEAKKAELEAKLAELEALKAELEAAKA 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 189458891 1005 KITSCIAEQERSIAELSDQYKQERLQLLQRCEETEAVLEDLRGNYKTAQENNAKLECMLSE 1065
Cdd:COG3883 172 ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAA 232
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
2355-2774 |
2.26e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.60 E-value: 2.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2355 QAEKSKAEIQTLKSEIQRMAQNLQDLQLELISTRSENENLmKELKKEQERVSDLETINSSIENLLKDKEQEKVQMKE--E 2432
Cdd:COG4717 82 EAEEKEEEYAELQEELEELEEELEELEAELEELREELEKL-EKLLQLLPLYQELEALEAELAELPERLEELEERLEElrE 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2433 AKITVEMLQTQLKELNETVVSLCNDQEVSKTKE-QNLGSQVQTLELEKAQLLQDLGEAKNKyiifqssVNALTQEVEAGK 2511
Cdd:COG4717 161 LEEELEELEAELAELQEELEELLEQLSLATEEElQDLAEELEELQQRLAELEEELEEAQEE-------LEELEEELEQLE 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2512 QKLEKGEKEirtlkEQLKSQEQLVCKLAQV---EGEQQLWQKQKLELRNVTMALEQKVQVLQSENNTLQSTYEALQNSHK 2588
Cdd:COG4717 234 NELEAAALE-----ERLKEARLLLLIAAALlalLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQ 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2589 SLESELGLIKLEKVALVERVSTISGKEAELQRELRDMLQKTTQLSEDYNKEKNRLtEEVEVLREELQNTKAAHLKSVNQL 2668
Cdd:COG4717 309 ALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEEL-QLEELEQEIAALLAEAGVEDEEEL 387
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2669 EKELQRAQgkiklmlkSCRQLEGEKEMLQkelSQLEAAQQQRAGSLVDSNVDEVMTENKALKETLEEKVKEADKYLDKYC 2748
Cdd:COG4717 388 RAALEQAE--------EYQELKEELEELE---EQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELA 456
|
410 420
....*....|....*....|....*...
gi 189458891 2749 SLLISHEELEKAKEI--LEIEVARLKSR 2774
Cdd:COG4717 457 ELEAELEQLEEDGELaeLLQELEELKAE 484
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
2298-2555 |
2.52e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 43.38 E-value: 2.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2298 HLKSSIRKL----KVHIDadEKKHQNILEQLKESKHHADLLKDRVENLEQeliLSEKNMIFQAEKSKAEIQTLKSEIQRM 2373
Cdd:PRK05771 17 YKDEVLEALhelgVVHIE--DLKEELSNERLRKLRSLLTKLSEALDKLRS---YLPKLNPLREEKKKVSVKSLEELIKDV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2374 AQNLQDLQ---LELISTRSENENLMKELKKEQERVSDLETINSSIENLLKdkeqekvqmKEEAKITVEMLQTQLKELNET 2450
Cdd:PRK05771 92 EEELEKIEkeiKELEEEISELENEIKELEQEIERLEPWGNFDLDLSLLLG---------FKYVSVFVGTVPEDKLEELKL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2451 VVSLCNDQEVSKTKEQN----LGSQVQTLELEKaqLLQDLGEAKNKYiifqSSVNALTQEVEAGKQKLEKGEKEIRTLKE 2526
Cdd:PRK05771 163 ESDVENVEYISTDKGYVyvvvVVLKELSDEVEE--ELKKLGFERLEL----EEEGTPSELIREIKEELEEIEKERESLLE 236
|
250 260
....*....|....*....|....*....
gi 189458891 2527 QLKSQEQLVCKLAQVEGEQQLWQKQKLEL 2555
Cdd:PRK05771 237 ELKELAKKYLEELLALYEYLEIELERAEA 265
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
2221-2338 |
3.16e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 43.15 E-value: 3.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2221 EKQSRVSELDERCSSLRRLLEEKEQARvqMEEDSKSamlmlQMQLKELREEVAALCNDQETLKAQEQSLDQPGEEVHHLK 2300
Cdd:COG0542 405 EIDSKPEELDELERRLEQLEIEKEALK--KEQDEAS-----FERLAELRDELAELEEELEALKARWEAEKELIEEIQELK 477
|
90 100 110
....*....|....*....|....*....|....*...
gi 189458891 2301 SSIRKLKVHIDADEKKHQNILEQLKEskhHADLLKDRV 2338
Cdd:COG0542 478 EELEQRYGKIPELEKELAELEEELAE---LAPLLREEV 512
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1952-2131 |
3.35e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.83 E-value: 3.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1952 ELFTVISERNRLREELDNVSKESKALDQMSKKMKEKIEELESHQRESLRHIGAVESEVKDKADLIQTLSFNVGELTKDKa 2031
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNK- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2032 hlqeQLQNLQNDSQELSLAIGELEIQIGQLNKEKESLVKESQNFQIKLTESECEKQTISKALEVALKEkgefavqlssAQ 2111
Cdd:COG1579 90 ----EYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAE----------LE 155
|
170 180
....*....|....*....|
gi 189458891 2112 EEVHQLRRGIEKLSVRIEAD 2131
Cdd:COG1579 156 AELEELEAEREELAAKIPPE 175
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
2355-2586 |
3.38e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.51 E-value: 3.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2355 QAEKSKAEIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERVSDLEtinssienllkdKEQEKVQmkeeak 2434
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQ------------AEIAEAE------ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2435 itvEMLQTQLKELNETVVSLCNDQEVSKTKEQNLGSQVQTLELEKAQLLQDLGEAKNKYIifqSSVNALTQEVEAGKQKL 2514
Cdd:COG3883 79 ---AEIEERREELGERARALYRSGGSVSYLDVLLGSESFSDFLDRLSALSKIADADADLL---EELKADKAELEAKKAEL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2515 EKGEKEIRTLKEQLKS--------QEQLVCKLAQVEGEQQLWQKQKLELRNVTMALEQKVQVLQSENNTLQSTYEALQNS 2586
Cdd:COG3883 153 EAKLAELEALKAELEAakaeleaqQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAA 232
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
280-760 |
3.38e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.09 E-value: 3.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 280 NQDLKSKMTELELRLQGQEKEMRSQVNKCQDLQLQLEKTKVELIEKERILNKTRDEVVRSTAQYDQAAAKCTTLEQKLKT 359
Cdd:TIGR04523 213 NKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQ 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 360 LTEELSchrqnaeSAKRSLEQRIKEKEKELQEELSRQHQSFQALDSEYTQMKTRLTQELQQVKHLHSTLQLELEKVTSVK 439
Cdd:TIGR04523 293 LKSEIS-------DLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQREL 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 440 QQLERNLEEIRLKLSRAEQALQASQVAENELRRSSEEMKKENSLIRSQSEQRTREVCHLEEELGKVKVSLSKSQNFAEEM 519
Cdd:TIGR04523 366 EEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDL 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 520 KAKNTSQEIMLRDLQEKLNQQENSLtlEKLKLALADLERQRNCSQDLLKKREHHIDQLNNKLNKIEKEFETLlsalelkk 599
Cdd:TIGR04523 446 TNQDSVKELIIKNLDNTRESLETQL--KVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDL-------- 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 600 keceelkeeKNQISFWKIDSEKL---INQIESEKEILLGKINHLETSLKTQQVSPDSNERIRTLEmerenftvEIKNLQS 676
Cdd:TIGR04523 516 ---------TKKISSLKEKIEKLeseKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEIE--------ELKQTQK 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 677 MLDSKmveiktQKQAYLELQQKsESSDQKHQKEIENMCLKANKLTGQVESLECKLQLLSSEVVTKDQQYQDLRMEYETLR 756
Cdd:TIGR04523 579 SLKKK------QEEKQELIDQK-EKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIK 651
|
....
gi 189458891 757 DLLK 760
Cdd:TIGR04523 652 ETIK 655
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1901-2071 |
3.52e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 3.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1901 ERELTRIKSEKANIEHHILSVETNLEVVQAEKLCLER---------DTESKQKVIIDLKEELftvisernrlrEELDNVS 1971
Cdd:COG4913 616 EAELAELEEELAEAEERLEALEAELDALQERREALQRlaeyswdeiDVASAEREIAELEAEL-----------ERLDASS 684
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1972 KESKALDQMSKKMKEKIEELESHQRESLRHIGAVESEVKDKADLIQTLSFNVGELTKDK-----AHLQEQLQNLQNDSQE 2046
Cdd:COG4913 685 DDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLArlelrALLEERFAAALGDAVE 764
|
170 180
....*....|....*....|....*
gi 189458891 2047 LSLAiGELEIQIGQLNKEKESLVKE 2071
Cdd:COG4913 765 RELR-ENLEERIDALRARLNRAEEE 788
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2137-2418 |
3.74e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 3.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2137 SAVAKLKESQRESDSLKDTVETlerelerseenqelaildsenLKAEVETLKAQKDEMTKSLRIFElDLVTVRTERENLA 2216
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAE---------------------AEERLEALEAELDALQERREALQ-RLAEYSWDEIDVA 664
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2217 ---KQLQEKQSRVSELDERCSSLRRLLEEKEQARVQMEEdsksamlmLQMQLKELREEVAALCNDQETLKAQEQSLdqpg 2293
Cdd:COG4913 665 saeREIAELEAELERLDASSDDLAALEEQLEELEAELEE--------LEEELDELKGEIGRLEKELEQAEEELDEL---- 732
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2294 EEVHHLKSSIRKLKVHIDADEKKHQNILEQLkESKHHADL------LKDRVENLEQEL--ILSEKNMIFQAEKSKAEIqT 2365
Cdd:COG4913 733 QDRLEAAEDLARLELRALLEERFAAALGDAV-ERELRENLeeridaLRARLNRAEEELerAMRAFNREWPAETADLDA-D 810
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 189458891 2366 LKS--EIQRMAQNLQDLQL--------ELISTRSENE--NLMKELKKEQERVSD-LETINSSIENL 2418
Cdd:COG4913 811 LESlpEYLALLDRLEEDGLpeyeerfkELLNENSIEFvaDLLSKLRRAIREIKErIDPLNDSLKRI 876
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
829-1323 |
3.82e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.13 E-value: 3.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 829 EHIAILQNRVTSLESSLESQNQMNSDLQMRCEELLQIKGEVEENLSKAEQIHQnfVAETNQCISKLQEDAAVHQNIVAET 908
Cdd:PRK03918 238 EEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKE--KAEEYIKLSEFYEEYLDELREIEKR 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 909 LATLESKEKELQLLKEKLEAQQTEVQKLNKNNCLLEGTLKELQLLSDTLSSEKKEMNSIISLSKK----NIEELTQANEA 984
Cdd:PRK03918 316 LSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRltglTPEKLEKELEE 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 985 LKEVNEALEQEKMNLLQKHEKITSCIAEQERSIAELS----------------------DQYKQERLQLLQRCEETEAVL 1042
Cdd:PRK03918 396 LEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKkakgkcpvcgrelteehrkellEEYTAELKRIEKELKEIEEKE 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1043 EDLRGNYKtaqennaKLECMLSECTALCENRK--NELEQLKETFAKEQQEFLTKLAFAEEQNRKLMLELEIEQQTVRSEI 1120
Cdd:PRK03918 476 RKLRKELR-------ELEKVLKKESELIKLKElaEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKEL 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1121 TNTNkhsmsatdGLRQECLTLNEEQNEQQNEVSNLTHENEQLmeltqtkhdSYLAVEPVENSVKATEDeigksssqyqmd 1200
Cdd:PRK03918 549 EKLE--------ELKKKLAELEKKLDELEEELAELLKELEEL---------GFESVEELEERLKELEP------------ 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1201 IDTKDISLDSYKAQLVHLEALVRILEVQLDQSEEENKKLHLELQTIREELEtkssqdpQSQARTGLKDCDTAEEKYVSML 1280
Cdd:PRK03918 600 FYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELE-------ELEKKYSEEEYEELREEYLELS 672
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 189458891 1281 QELSASQNENAHLQCSLQTAVNKLNELGKMCDVLRVEKLQLES 1323
Cdd:PRK03918 673 RELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEK 715
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1932-2584 |
3.88e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.85 E-value: 3.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1932 KLCLERDTESKQKVIIDLKEELFTVISErnrLREELDNVSKESKALDQMSKKMKEKIEELESHQRESLRHIGAVESEVKD 2011
Cdd:pfam01576 333 KKALEEETRSHEAQLQEMRQKHTQALEE---LTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKK 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2012 KADLIQTLSFNVGELTKDKAHLQEQLQNLQNDSQELSLAIGELEIQIGQLNKEKESLVKESQNFQIKLTESECEKQTISK 2091
Cdd:pfam01576 410 LEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLST 489
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2092 alevalkekgefavQLSSAQEEVHQLRRGIEKLSVRIEADEKKHLSAVAKLKESQRESDSLKDTVETLERELERSEENQE 2171
Cdd:pfam01576 490 --------------RLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELE 555
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2172 LAILDSENLKAEVETLKAQKDEMTKslrifELDLVTVRTERE-NLAKQLQEKQSRVSEL--DERCSSLRRlLEEKEQARV 2248
Cdd:pfam01576 556 ALTQQLEEKAAAYDKLEKTKNRLQQ-----ELDDLLVDLDHQrQLVSNLEKKQKKFDQMlaEEKAISARY-AEERDRAEA 629
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2249 QMEEDSKSAmLMLQMQLKELREEVAALCNDQETLKAQEQSL----DQPGEEVHHLKSSIRKLKvhidadekkhqnilEQL 2324
Cdd:pfam01576 630 EAREKETRA-LSLARALEEALEAKEELERTNKQLRAEMEDLvsskDDVGKNVHELERSKRALE--------------QQV 694
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2325 KESKHHADLLKDRVENLEQELILSEKNMifQAEKSKAEIQTLKSEIQ------RMAQNLQDLQLELISTRSENENLMKEL 2398
Cdd:pfam01576 695 EEMKTQLEELEDELQATEDAKLRLEVNM--QALKAQFERDLQARDEQgeekrrQLVKQVRELEAELEDERKQRAQAVAAK 772
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2399 KKEQERVSDLEtinSSIENLLKDKEQEKVQMKEeakitvemLQTQLKELNETV--VSLCNDQEVSKTKEQNlgSQVQTLE 2476
Cdd:pfam01576 773 KKLELDLKELE---AQIDAANKGREEAVKQLKK--------LQAQMKDLQRELeeARASRDEILAQSKESE--KKLKNLE 839
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2477 LEKAQLLQDLGEAKNKYIIFQSSVNALTQEVEAGKQKLEKGEKEIRTLKEQLKSQEQlvcklaQVEGEQQLWQKQKLELR 2556
Cdd:pfam01576 840 AELLQLQEDLAASERARRQAQQERDELADEIASGASGKSALQDEKRRLEARIAQLEE------ELEEEQSNTELLNDRLR 913
|
650 660
....*....|....*....|....*...
gi 189458891 2557 NVTMALEQKVQVLQSENNTLQSTYEALQ 2584
Cdd:pfam01576 914 KSTLQVEQLTTELAAERSTSQKSESARQ 941
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
4-514 |
4.14e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 4.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 4 ALEEWKEGLPS-RALQKIQELEGQLEKLKKEKQQRQFQLDSLEAALQKQKQKVE---------DGKTEgADLKRENQRLM 73
Cdd:COG4913 273 ELEYLRAALRLwFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDeleaqirgnGGDRL-EQLEREIERLE 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 74 EICEHLEKSRQKLSHELQVKESQVNLQESQLsscKKQIEKLEQELKRCKSEFERSQQVAQSADVSLnpcstpqklfatpl 153
Cdd:COG4913 352 RELEERERRRARLEALLAALGLPLPASAEEF---AALRAEAAALLEALEEELEALEEALAEAEAAL-------------- 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 154 tpsstyEDLKEkynkeveERKRLEEEVKALHAKKVSLPVSQATMnhRDIARHQASSS------------VFP----WQQ- 216
Cdd:COG4913 415 ------RDLRR-------ELRELEAEIASLERRKSNIPARLLAL--RDALAEALGLDeaelpfvgelieVRPeeerWRGa 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 217 -ENT----------PSRLSSDALK----TPLRRdgsaaHFLGEEVSPNKSSMKTGRGDCSSLPGE----PHSAQ-LLHQA 276
Cdd:COG4913 480 iERVlggfaltllvPPEHYAAALRwvnrLHLRG-----RLVYERVRTGLPDPERPRLDPDSLAGKldfkPHPFRaWLEAE 554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 277 KAQNQDLKSKMTELELR-------LQGQ--------EKEMRSQVNkcQDLQLQLE-KTKVELIEKEriLNKTRDEVVRST 340
Cdd:COG4913 555 LGRRFDYVCVDSPEELRrhpraitRAGQvkgngtrhEKDDRRRIR--SRYVLGFDnRAKLAALEAE--LAELEEELAEAE 630
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 341 AQYDQAAAKCTTLEQKLKTLT--EELSCHRQNAESAKRSLEQRikekekelqeelSRQHQSFQALDSEYTQmktrLTQEL 418
Cdd:COG4913 631 ERLEALEAELDALQERREALQrlAEYSWDEIDVASAEREIAEL------------EAELERLDASSDDLAA----LEEQL 694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 419 QQVKHLHSTLQLELEKVTSVKQQLERNLEEIRLKLSRAEQALQ-ASQVAENELRRSSEEMKKEnsLIRSQSEQRTREvcH 497
Cdd:COG4913 695 EELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEaAEDLARLELRALLEERFAA--ALGDAVERELRE--N 770
|
570
....*....|....*..
gi 189458891 498 LEEELGKVKVSLSKSQN 514
Cdd:COG4913 771 LEERIDALRARLNRAEE 787
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
34-823 |
4.40e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.82 E-value: 4.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 34 KQQRQFQLDSLEAALQKQKQKVEDGKTEGADLKRENQRLMEICEHLEKSRQklSHELQVKESQVNLQESQLSSCKKQIEK 113
Cdd:PTZ00121 1085 EDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARK--AEDARKAEEARKAEDAKRVEIARKAED 1162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 114 LEQELKRCKSEFERSQQVAQSADVSLNPCSTPQKLFATPLTPSSTYEDLKEkynkeVEERKRLEEEVKALHAKKVSLPVS 193
Cdd:PTZ00121 1163 ARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERK-----AEEARKAEDAKKAEAVKKAEEAKK 1237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 194 QATMNHRDIARHQASSSVFPWQQENTPSRLSSDALKTPLRRDGSAAHFLGEEVSPNKSSMKTGRGDCSSLPGEPHSAQLL 273
Cdd:PTZ00121 1238 DAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKA 1317
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 274 HQAKAQNQDLKSKMTELELRLQGQEK--EMRSQVNKCQDLQLQLEKTKVELIEKERILNKTRDEVVRSTAQYDQAAAKCT 351
Cdd:PTZ00121 1318 DEAKKKAEEAKKKADAAKKKAEEAKKaaEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAK 1397
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 352 TLEQKLKTLTEEL---SCHRQNAESAKRSLEQRIKEKEKELQEELSRQHQSFQ--ALDSEYTQMKTRLTQELQQVKHLHS 426
Cdd:PTZ00121 1398 KKAEEDKKKADELkkaAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKkkAEEAKKAEEAKKKAEEAKKADEAKK 1477
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 427 TLQlELEKVTSVKQQLE---RNLEEIRLKLS---RAEQALQASQVAENELRRSSEEMKKENSLIRSQSEQRTREVCHLEE 500
Cdd:PTZ00121 1478 KAE-EAKKADEAKKKAEeakKKADEAKKAAEakkKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEE 1556
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 501 ELGKVKVSLSKSQNFAEEMKAKNTSQEIMLRDLQEKLNQQENSLTLEKLKLALADL--ERQRNCSQDLLKKREHHIDQLN 578
Cdd:PTZ00121 1557 LKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAkkAEEAKIKAEELKKAEEEKKKVE 1636
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 579 NKLNKIEKEFETLLSALELKKKECEELKEEKNQISFWKIDSEKLINQIESEKEILLGKINHLETSLKTQQVSPDSNERIR 658
Cdd:PTZ00121 1637 QLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKK 1716
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 659 TLEmerenftvEIKNLQSMLDSKMVEIKTQKQaylELQQKSESSDQKHQKEIENMCLKANKLTGQVESLECKLQLLSSEV 738
Cdd:PTZ00121 1717 KAE--------ELKKAEEENKIKAEEAKKEAE---EDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEEL 1785
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 739 VTKDQQYqdlRMEYETLRDLLKSRGSSLVTNEDNQRSSEDNQRSSEDNQRGSLAFEQ--QPAVSDSFANVMGRKGSINSE 816
Cdd:PTZ00121 1786 DEEDEKR---RMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKnmQLEEADAFEKHKFNKNNENGE 1862
|
....*..
gi 189458891 817 RSDCSVD 823
Cdd:PTZ00121 1863 DGNKEAD 1869
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
907-1331 |
4.41e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.72 E-value: 4.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 907 ETLATLESKEKELQLLKEKLEAQQ-TEVQKLNKNNCLL---EGTLKELqllsDTLSSEKKEMNSIISLSKKNIEELTQAN 982
Cdd:PRK02224 206 ERLNGLESELAELDEEIERYEEQReQARETRDEADEVLeehEERREEL----ETLEAEIEDLRETIAETEREREELAEEV 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 983 EALKEVNEALEQEKMNLLQK-------HEKITSCIAEQERSIAELSDQYKQERLQLLQRCEETEAVLE---DLRGNYKTA 1052
Cdd:PRK02224 282 RDLRERLEELEEERDDLLAEaglddadAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREdadDLEERAEEL 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1053 QENNAKLECMLSECTALCENRKNELEQLKE---------TFAKEQ----QEFLTKLAFAEEQNRKLMLELEIEQQTVRSE 1119
Cdd:PRK02224 362 REEAAELESELEEAREAVEDRREEIEELEEeieelrerfGDAPVDlgnaEDFLEELREERDELREREAELEATLRTARER 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1120 ItntNKHSMSATDGLRQECltlnEEQNEQQNEVSNLTHENEQLMELTQTKHDSYLAVEPVEN------SVKATEDEIGKS 1193
Cdd:PRK02224 442 V---EEAEALLEAGKCPEC----GQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEErleraeDLVEAEDRIERL 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1194 SSQYQMD---IDTKDISLDSYKAQLVHLEALVRILEVQLDQSEEENKKLHLELQTIREELETKSSQdpqsqaRTGLKDCD 1270
Cdd:PRK02224 515 EERREDLeelIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSK------LAELKERI 588
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 189458891 1271 TAEEKYVSMLQELSASQNENAHLQCSLQTAVNKLNELGKMCDVLRVEKLQLESELNDSRTE 1331
Cdd:PRK02224 589 ESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIE 649
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1888-2743 |
4.46e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 42.73 E-value: 4.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1888 NTEDNYKEKFLDMERELTRIKSEKANIEHH---ILSVETNLEVVQAEKLCLERD----TESKQKVIIDLKEELFTVISER 1960
Cdd:TIGR00606 231 AQLESSREIVKSYENELDPLKNRLKEIEHNlskIMKLDNEIKALKSRKKQMEKDnselELKMEKVFQGTDEQLNDLYHNH 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1961 NR----LREELDNVSKESKALDQMSKKMKEKIEELESHQRESLRHIGAVESEVKDKADLIQTLSFNVG-ELTKDKAHLQE 2035
Cdd:TIGR00606 311 QRtvreKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLElDGFERGPFSER 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2036 QLQNLqndsqeLSLAIGELEIQIGQLNKEKESLVKESQNFQIKLTESECEKQTISKALEVALKEKGEFAVQLSSAQEEVH 2115
Cdd:TIGR00606 391 QIKNF------HTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQ 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2116 QLRRGIEKLsVRIEADEKKHLSAVAKLKESQRESDSLKDTV----ETLERELERSEENQELAILDSENlKAEVETLKAQK 2191
Cdd:TIGR00606 465 QLEGSSDRI-LELDQELRKAERELSKAEKNSLTETLKKEVKslqnEKADLDRKLRKLDQEMEQLNHHT-TTRTQMEMLTK 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2192 DEMTKSLRIFELD---------LVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQM--EEDSKSAMLM 2260
Cdd:TIGR00606 543 DKMDKDEQIRKIKsrhsdeltsLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHInnELESKEEQLS 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2261 --------------LQMQLKELREEVAALCNDQETLKAQEQSLDQPGEEVHHLKSSIRKLkvhIDADEKKHQNILEQLKE 2326
Cdd:TIGR00606 623 syedklfdvcgsqdEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPV---CQRVFQTEAELQEFISD 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2327 SKHHADLLKDRVENLEQELILSEKN---MIFQAEKSKAEIQTLKSEIQRMAQNLQDLQLE---LISTRSENENLMKELKK 2400
Cdd:TIGR00606 700 LQSKLRLAPDKLKSTESELKKKEKRrdeMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDiqrLKNDIEEQETLLGTIMP 779
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2401 EQERVSDLETINSSIENL-LKDKEQEKVQMKEEAKITVEMLQTQLKELNETVvslcNDQEVSKTKEQNLGSQVQTLELEK 2479
Cdd:TIGR00606 780 EEESAKVCLTDVTIMERFqMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEK----QEKQHELDTVVSKIELNRKLIQDQ 855
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2480 AQLLQDLGEAKNKYIIFQSSVNALTQEVEAGKQKLEKGEKEIRTLKEQLKSQEQLVCKLAQVEGEQQLWQKQKLELRNVT 2559
Cdd:TIGR00606 856 QEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETS 935
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2560 MALEQ-KVQVLQSENNTLQSTYEALQNS-HKSLESELGLIKLEKVALVERVSTISGKEAELQRELRDMLQKTTQLSEDYN 2637
Cdd:TIGR00606 936 NKKAQdKVNDIKEKVKNIHGYMKDIENKiQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQER 1015
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2638 KEKNRLTEEVEVLR-EELQNTKAAHLKSVNQLE-----KELQRAQGKIKLMLKSCRQLEGEKEMLQKELSQLEAAQQQRA 2711
Cdd:TIGR00606 1016 WLQDNLTLRKRENElKEVEEELKQHLKEMGQMQvlqmkQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQ 1095
|
890 900 910
....*....|....*....|....*....|..
gi 189458891 2712 GSLVDSNVDEVMTENKalkeTLEEKVKEADKY 2743
Cdd:TIGR00606 1096 FRDAEEKYREMMIVMR----TTELVNKDLDIY 1123
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
10-711 |
5.23e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 42.65 E-value: 5.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 10 EGLPSRALQKIQELEGQLEKLKKEKQQRQFQLDSLEAALQKQKQKVEDGKTEGAD-LKRENQRLMEICEHLEKSRQKLSH 88
Cdd:TIGR00618 179 TQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREaLQQTQQSHAYLTQKREAQEEQLKK 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 89 ELQVKESQVNLQE--SQLSSCKKQIEKLEQELKRCK--SEFERSQQVAQSADVSLNPCSTPQKLFATPLTPSSTYedlkE 164
Cdd:TIGR00618 259 QQLLKQLRARIEElrAQEAVLEETQERINRARKAAPlaAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAH----V 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 165 KYNKEVEERKRLEEEVKALHAKKVSLPVSQATMNHRDIARHQASSSVFPWQQENTPSR---LSSDALKTPLRRDGSAAHF 241
Cdd:TIGR00618 335 KQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTqklQSLCKELDILQREQATIDT 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 242 LGEEVSPNKSSMKTGRGDCSslPGEPHSAQLLHQAKAQNQDLKSKMTELElRLQGQEKEMRSQVNKCQDLQLQLEKTKVE 321
Cdd:TIGR00618 415 RTSAFRDLQGQLAHAKKQQE--LQQRYAELCAAAITCTAQCEKLEKIHLQ-ESAQSLKEREQQLQTKEQIHLQETRKKAV 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 322 LIEKERILNKTRDEVVRSTAQYDQAAAKCTTLEQKLKTLTEELSCHRQNAESAK--RSLEQRIKEKEKELQEELSRQHQS 399
Cdd:TIGR00618 492 VLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEdvYHQLTSERKQRASLKEQMQEIQQS 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 400 FQALDSEYTQMKTRLTQELQQVKHLHSTLQLELEKVTSVKQQLERNLEEIRLKLSRAEQALQASQVAENELRRSSEEMKK 479
Cdd:TIGR00618 572 FSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHAL 651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 480 ENSLIRSQSEQRTREVCHLEEELGKVKVSLSKsqnFAEEMKAKNTSQEIMLRDLQEKLNQQEnsltlEKLKLALADLERQ 559
Cdd:TIGR00618 652 QLTLTQERVREHALSIRVLPKELLASRQLALQ---KMQSEKEQLTYWKEMLAQCQTLLRELE-----THIEEYDREFNEI 723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 560 RNCSQDLLKKREHHIDQLNNKLNKIEKEFETLLSALELKKKECEELKEEKNQISfwkIDSEKLINQIESEKEILLGKINH 639
Cdd:TIGR00618 724 ENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTG---AELSHLAAEIQFFNRLREEDTHL 800
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 189458891 640 LETSLKTQQVSPDSNERIRTLEMERenFTVEIKNLQSMLDSKMVEIKTQKQAYLELQQKSESSDQKHQKEIE 711
Cdd:TIGR00618 801 LKTLEAEIGQEIPSDEDILNLQCET--LVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAK 870
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1940-2462 |
5.47e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.44 E-value: 5.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1940 ESKQKVIIDLKEELFTVISERNRLREELDNVSKESKALDQMSKKMKE--KIEELESHQRESLRHIGAVE--SEVKDKADL 2015
Cdd:PTZ00121 1435 EAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEakKADEAKKKAEEAKKKADEAKkaAEAKKKADE 1514
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2016 IQTL--SFNVGELTK-DKAHLQEQLQNLQNDSQELSLAIGElEIQIGQLNKEKESLVKESQNFQIKLTESE----CEKQT 2088
Cdd:PTZ00121 1515 AKKAeeAKKADEAKKaEEAKKADEAKKAEEKKKADELKKAE-ELKKAEEKKKAEEAKKAEEDKNMALRKAEeakkAEEAR 1593
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2089 ISKALEVALKEKGEFAVQLSSAQEE---VHQLRRGiEKLSVRIEADEKKHLSAVAKLKESQRESDSLKDTVETLERELER 2165
Cdd:PTZ00121 1594 IEEVMKLYEEEKKMKAEEAKKAEEAkikAEELKKA-EEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEE 1672
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2166 SEENQELAILDSENLKAEVETLKAQKDEMTKSLRIFELDLVTVRtERENLAKQLQEKQSRVSELDERCSSLRRlleEKEQ 2245
Cdd:PTZ00121 1673 DKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKK-KAEELKKAEEENKIKAEEAKKEAEEDKK---KAEE 1748
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2246 ARVQMEEDSKSAMLMLQMQLKELREEVAALCNDQETLKAQEQSLDQPGEevhhlkssiRKLKVHIDADEkkhqNILEQLK 2325
Cdd:PTZ00121 1749 AKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVD---------KKIKDIFDNFA----NIIEGGK 1815
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2326 ESKHHADLLKDRVENLEQELILSEKNMIFQAEKSKAEIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERV 2405
Cdd:PTZ00121 1816 EGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDK 1895
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 189458891 2406 SDLETINSSIENLLKDKEQEKVQMKEEAKITVEMLQTQLKELNETVVSLCNDQEVSK 2462
Cdd:PTZ00121 1896 DDIEREIPNNNMAGKNNDIIDDKLDKDEYIKRDAEETREEIIKISKKDMCINDFSSK 1952
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
1946-2144 |
5.93e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 42.22 E-value: 5.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1946 IIDLKEELFT-----VISERNRLREELDNV----SKESKALDQMSKKMKEKIEELESHQRESLrhiGAVESEVKDKADLI 2016
Cdd:PRK05771 33 IEDLKEELSNerlrkLRSLLTKLSEALDKLrsylPKLNPLREEKKKVSVKSLEELIKDVEEEL---EKIEKEIKELEEEI 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2017 QTLSfnvGELTKDKAHLqEQLQNLQNDSQELSLAIGE--LEIQIGQLNKEKESLVK--ESQNFQIKLTESE--------C 2084
Cdd:PRK05771 110 SELE---NEIKELEQEI-ERLEPWGNFDLDLSLLLGFkyVSVFVGTVPEDKLEELKleSDVENVEYISTDKgyvyvvvvV 185
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 189458891 2085 EKQTISKALEVALK---------EKGEFAVQLSSAQEEVHQLRRGIEKLSVRIEADEKKHLSAVAKLKE 2144
Cdd:PRK05771 186 LKELSDEVEEELKKlgferleleEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYE 254
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2106-2303 |
6.52e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 6.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2106 QLSSAQEEVHQLRRGIEKL-----------SVRIEADEKKHLSAVAKLKESQRESDSLKDTVETLERELERSEENQELAI 2174
Cdd:COG4913 236 DLERAHEALEDAREQIELLepirelaeryaAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2175 LDSENLKAEVETLKAQKDEmTKSLRIFELdlvtvRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQMEEDS 2254
Cdd:COG4913 316 ARLDALREELDELEAQIRG-NGGDRLEQL-----EREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEA 389
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 189458891 2255 KSAMLMLQMQLKELREEVAALCNDQETLKAQEQSLDQPGEEVHHLKSSI 2303
Cdd:COG4913 390 AALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNI 438
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
424-712 |
6.71e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.93 E-value: 6.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 424 LHSTLQLELEKVTSVKQQLERNLEEIRLKLSRAEQALQasqvaenelrrsseEMKKENSLIRSQSEQRTrevchLEEELG 503
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALE--------------EFRQKNGLVDLSEEAKL-----LLQQLS 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 504 KVKVSLSKSQNFAEEMKAKNTSQEIMLRDLQEKLNQQENSLTLEKLKLALADLERQRncsQDLLKK-REHH--IDQLNNK 580
Cdd:COG3206 223 ELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAEL---AELSARyTPNHpdVIALRAQ 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 581 LNKIEKEFETLLsalelkkkeceelkeeknqisfwkidsEKLINQIESEKEILLGKINHLETSLKTQQvspdsnERIRTL 660
Cdd:COG3206 300 IAALRAQLQQEA---------------------------QRILASLEAELEALQAREASLQAQLAQLE------ARLAEL 346
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 189458891 661 EMERenftVEIKNLQSmldskmvEIKTQKQAYLELQQKSESSDQKHQKEIEN 712
Cdd:COG3206 347 PELE----AELRRLER-------EVEVARELYESLLQRLEEARLAEALTVGN 387
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
2180-2736 |
6.72e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 42.04 E-value: 6.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2180 LKAEVETLKAQKDEMTKSlriFELDLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQMEEDSKSAML 2259
Cdd:pfam05557 7 SKARLSQLQNEKKQMELE---HKRARIELEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAELNRLKKK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2260 MLQMQLKELREEVAALCNDQETLKAQEQsldqpgeEVHHLKSSIRKLKVHIDADEKKHQNILEQLKESKHHADLLKDRVE 2339
Cdd:pfam05557 84 YLEALNKKLNEKESQLADAREVISCLKN-------ELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQ 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2340 NLE---QELILSEKNM------IFQAEKSKAEIQTLKSEIQRMAQNLQDLQ-----LELISTRSENENLMKE-------- 2397
Cdd:pfam05557 157 NLEkqqSSLAEAEQRIkelefeIQSQEQDSEIVKNSKSELARIPELEKELErlrehNKHLNENIENKLLLKEevedlkrk 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2398 ---LKKEQERVSDLETINSSIENLLKdkEQEKVQMKEEAKI-TVEMLQTQLKELNETVVSLCNDQEVSKTKEQNLGSQVQ 2473
Cdd:pfam05557 237 lerEEKYREEAATLELEKEKLEQELQ--SWVKLAQDTGLNLrSPEDLSRRIEQLQQREIVLKEENSSLTSSARQLEKARR 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2474 TLELEKAQLLQDLGEAKNKYII-------FQSSVNALTQEVEAGKQKLEKGEKEirtlkeqLKSQEQLVCKLAQVEGEQQ 2546
Cdd:pfam05557 315 ELEQELAQYLKKIEDLNKKLKRhkalvrrLQRRVLLLTKERDGYRAILESYDKE-------LTMSNYSPQLLERIEEAED 387
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2547 LWQKQKLELRNVTMALEQkvqvlqsenntLQSTYEALQNSHKSLESELGLIKlEKVALVERVSTISGKEaELQRELRDML 2626
Cdd:pfam05557 388 MTQKMQAHNEEMEAQLSV-----------AEEELGGYKQQAQTLERELQALR-QQESLADPSYSKEEVD-SLRRKLETLE 454
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2627 QKTTQLSEDYNKEKNRLTEEVEVLREELQNTKAAHLKSVNQLEKELQRAQgkiklmlkscrqlegEKEMLQKELSQLEAA 2706
Cdd:pfam05557 455 LERQRLREQKNELEMELERRCLQGDYDPKKTKVLHLSMNPAAEAYQQRKN---------------QLEKLQAEIERLKRL 519
|
570 580 590
....*....|....*....|....*....|
gi 189458891 2707 QQQRAGSLVDSNVDEVMTENKALKETLEEK 2736
Cdd:pfam05557 520 LKKLEDDLEQVLRLPETTSTMNFKEVLDLR 549
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
909-1090 |
7.35e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 7.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 909 LATLESKEKELQLLKEKLEAQQTEVQKLNKnnclLEGTLKELQLLSDTLSSEKKEMNSIISLsKKNIEELTQANEALKEV 988
Cdd:COG4717 70 LKELKELEEELKEAEEKEEEYAELQEELEE----LEEELEELEAELEELREELEKLEKLLQL-LPLYQELEALEAELAEL 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 989 NEALEQekmnLLQKHEKITSCIAEQERSIAELSDQYKQERLQLLQRCEETEAVLEDLRGNYKTAQENNAKLECMLSECTA 1068
Cdd:COG4717 145 PERLEE----LEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQE 220
|
170 180
....*....|....*....|..
gi 189458891 1069 LCENRKNELEQLKETFAKEQQE 1090
Cdd:COG4717 221 ELEELEEELEQLENELEAAALE 242
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
1891-2450 |
7.58e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 42.35 E-value: 7.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1891 DNYKEKFLDMERELTRIKSEKANIE-----------HHILSVETNLEV--VQAEKLCLERDTeSKQKVIIDLKEELFTVI 1957
Cdd:TIGR01612 1253 DEIKEKSPEIENEMGIEMDIKAEMEtfnishdddkdHHIISKKHDENIsdIREKSLKIIEDF-SEESDINDIKKELQKNL 1331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1958 SERNRLREELDNVSKESKALDQMSK--KMKEKIEELESHQRESLRHIGAVESEVKDKADLIQTLSFNVG--------ELT 2027
Cdd:TIGR01612 1332 LDAQKHNSDINLYLNEIANIYNILKlnKIKKIIDEVKEYTKEIEENNKNIKDELDKSEKLIKKIKDDINleeckskiEST 1411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2028 KDKAHLQEQLQNLQNDSQELSLAIGELEIQIGQLNKEKESLVKESQNFQIKLTESE----CEKQTISKALEVALKEKGEF 2103
Cdd:TIGR01612 1412 LDDKDIDECIKKIKELKNHILSEESNIDTYFKNADENNENVLLLFKNIEMADNKSQhilkIKKDNATNDHDFNINELKEH 1491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2104 AVQLSSAQEEVHQLRRGIEKLSVRIEADEKK------HLSAVA---KLKESQRESDSLKDTVETLERELERSEENQELAI 2174
Cdd:TIGR01612 1492 IDKSKGCKDEADKNAKAIEKNKELFEQYKKDvtellnKYSALAiknKFAKTKKDSEIIIKEIKDAHKKFILEAEKSEQKI 1571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2175 LDSENLKAEVETLKAQKDEMTKSLrifeldlVTVRTERENLakqlQEKQSRVSELDERCSSLRRLLEEKEQARVQMEEDS 2254
Cdd:TIGR01612 1572 KEIKKEKFRIEDDAAKNDKSNKAA-------IDIQLSLENF----ENKFLKISDIKKKINDCLKETESIEKKISSFSIDS 1640
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2255 KsamlmlQMQLKELREEVAALCNDQETLKAQEQSLDQPGEEVHHLKSSIRKLKVHIDADEKKHQ-NILEQLKESkhhADL 2333
Cdd:TIGR01612 1641 Q------DTELKENGDNLNSLQEFLESLKDQKKNIEDKKKELDELDSEIEKIEIDVDQHKKNYEiGIIEKIKEI---AIA 1711
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2334 LKDRVENLEQELILSEKNMIFQAEKSKAEIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERVSDLETINS 2413
Cdd:TIGR01612 1712 NKEEIESIKELIEPTIENLISSFNTNDLEGIDPNEKLEEYNTEIGDIYEEFIELYNIIAGCLETVSKEPITYDEIKNTRI 1791
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 189458891 2414 SIEN-LLKDKEQEK--------VQMKEEAKItVEMLQTQLKELNET 2450
Cdd:TIGR01612 1792 NAQNeFLKIIEIEKksksylddIEAKEFDRI-INHFKKKLDHVNDK 1836
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
825-1055 |
7.69e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.93 E-value: 7.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 825 GRSPEHIAILQNRVTS--LESSLESQNQMNSDLQMRCEELLQikgEVEENLSKAEQIHQNFVAETNqcISKLQEDAavhq 902
Cdd:COG3206 144 SPDPELAAAVANALAEayLEQNLELRREEARKALEFLEEQLP---ELRKELEEAEAALEEFRQKNG--LVDLSEEA---- 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 903 NIVAETLATLESKEKELQLLKEKLEAQQTEVQKLNKNNCLLEGTLKE---LQLLSDTLSSEKKEMNSIISLSKKNIEELT 979
Cdd:COG3206 215 KLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQspvIQQLRAQLAELEAELAELSARYTPNHPDVI 294
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 189458891 980 QANEALKEVNEALEQEKMNLLQKHEKITSCIAEQERSIAELSDQYKQERLQLLQrceeTEAVLEDLRGNYKTAQEN 1055
Cdd:COG3206 295 ALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPE----LEAELRRLEREVEVAREL 366
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1951-2545 |
7.91e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.88 E-value: 7.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 1951 EELFTVISERNRLREELdNVSKESKALDQMSKKMKEKIEELESHQRESLRHIGAVESEVKDKADLIQTLSFNVGELTKDK 2030
Cdd:TIGR00618 310 QRIHTELQSKMRSRAKL-LMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQK 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2031 AHLQEQLQNLQNDSQELSLAIGELEIQIGQLNKEKESLVKESQNFQIKLTESECEKQTISKALEVALKEKGEfAVQLSSA 2110
Cdd:TIGR00618 389 TTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIH-LQESAQS 467
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2111 QEEVHQLRRGIEKLSVRIEADEKKHLSAVAKLKESQRESDSLKDTVETLERELERSEENQEL---AILDSENLKAEVETL 2187
Cdd:TIGR00618 468 LKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRmqrGEQTYAQLETSEEDV 547
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2188 KAQKDEMTKSLRIFELDLVTVRTERENLAKQLQEKQSRVSELDERCSSLRRLLEEKEQARVQMEEDSKSAMLMLQMQLkE 2267
Cdd:TIGR00618 548 YHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQ-D 626
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2268 LREEVAALCNDQETLKAQEQSLDQPGEEVHHLKSSIRKLKVHIDADEKKHQNILEqLKESKHHADLLKDRVENLEQ--EL 2345
Cdd:TIGR00618 627 LQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLA-LQKMQSEKEQLTYWKEMLAQcqTL 705
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2346 ILSEKNMIFQAEKSKAEIQ-TLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKEQERVSDLETInssiENLLKDKEQ 2424
Cdd:TIGR00618 706 LRELETHIEEYDREFNEIEnASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTA----ALQTGAELS 781
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2425 EKVQMKEEAKITVEMLQTQLKELNETVvslcndqevsktkEQNLGSQVQTLELEKAQLLQDLgeaknkyiifqssvnalt 2504
Cdd:TIGR00618 782 HLAAEIQFFNRLREEDTHLLKTLEAEI-------------GQEIPSDEDILNLQCETLVQEE------------------ 830
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 189458891 2505 qevEAGKQKLEKGEKEIRTLKEQLKSQEQLVCKLAQVEGEQ 2545
Cdd:TIGR00618 831 ---EQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQ 868
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
2209-2433 |
8.32e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.87 E-value: 8.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2209 RTEREN----LAKQLQEKQSRVSELDERCSSLRRLL------------EEKEQARVQMEEdSKSAMLMLQ---MQLKELR 2269
Cdd:PRK04863 846 RVELERaladHESQEQQQRSQLEQAKEGLSALNRLLprlnlladetlaDRVEEIREQLDE-AEEAKRFVQqhgNALAQLE 924
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2270 EEVAALCNDQETLKAQEQSLDQPGEEVHHLKSSIRKLKvhiDADEKKH----QNILEQLKESKHHADLLKDRVENLEQEL 2345
Cdd:PRK04863 925 PIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALT---EVVQRRAhfsyEDAAEMLAKNSDLNEKLRQRLEQAEQER 1001
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2346 -ILSEKNMIFQAEKSKAE--IQTLKSEIQRMAQNLQDLQLEL------------ISTRSENENLMKELKKEQERVSDLET 2410
Cdd:PRK04863 1002 tRAREQLRQAQAQLAQYNqvLASLKSSYDAKRQMLQELKQELqdlgvpadsgaeERARARRDELHARLSANRSRRNQLEK 1081
|
250 260 270
....*....|....*....|....*....|
gi 189458891 2411 INSSIE-------NLLKDKEQEKVQMKEEA 2433
Cdd:PRK04863 1082 QLTFCEaemdnltKKLRKLERDYHEMREQV 1111
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
2279-2587 |
8.72e-03 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 41.38 E-value: 8.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2279 QETLKAQEQSLDQPGEEVHHLKSSIRKLKVHIDADEKKHQNILEQLKESKHH----ADLLKDRVENLEQELI----LSEK 2350
Cdd:pfam06160 92 EELLDDIEEDIKQILEELDELLESEEKNREEVEELKDKYRELRKTLLANRFSygpaIDELEKQLAEIEEEFSqfeeLTES 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2351 NMIFQA----EKSKAEIQTLKSEIQRMAQNLQDLQLELISTRSENENLMKELKKE---------QERVSDLETINSSIEN 2417
Cdd:pfam06160 172 GDYLEArevlEKLEEETDALEELMEDIPPLYEELKTELPDQLEELKEGYREMEEEgyalehlnvDKEIQQLEEQLEENLA 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2418 LLKDKEQEKVQMKeeakitVEMLQTQLKELNETVVSLCNDQEVSKTKEQNLGSQVQTLELEKAQLLQDLGEAKNKYII-- 2495
Cdd:pfam06160 252 LLENLELDEAEEA------LEEIEERIDQLYDLLEKEVDAKKYVEKNLPEIEDYLEHAEEQNKELKEELERVQQSYTLne 325
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2496 --------FQSSVNALTQEVEAGKQKLEKGEKEIRTLKEQLKSQEQlvcKLAQVEGEQQLWQKQKLELRNVTMALEQKVQ 2567
Cdd:pfam06160 326 nelervrgLEKQLEELEKRYDEIVERLEEKEVAYSELQEELEEILE---QLEEIEEEQEEFKESLQSLRKDELEAREKLD 402
|
330 340
....*....|....*....|
gi 189458891 2568 VLQSEnntLQSTYEALQNSH 2587
Cdd:pfam06160 403 EFKLE---LREIKRLVEKSN 419
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
2220-2776 |
9.54e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 41.73 E-value: 9.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2220 QEKQSRVSELDERCSSLRRLLEEKEQARVQMEEDSKSamlmlQMQLKELREEVAALCNDQETLKAQEQSLDQpgeEVHHL 2299
Cdd:pfam10174 181 WERTRRIAEAEMQLGHLEVLLDQKEKENIHLREELHR-----RNQLQPDPAKTKALQTVIEMKDTKISSLER---NIRDL 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2300 KSSIRKLKVHIDADEKKHQNILEQLKESKHHADLLKDRVENLEQELilSEKNMIFQAEKSKAEiqTLKSEIQRMAQNLQD 2379
Cdd:pfam10174 253 EDEVQMLKTNGLLHTEDREEEIKQMEVYKSHSKFMKNKIDQLKQEL--SKKESELLALQTKLE--TLTNQNSDCKQHIEV 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2380 LQLELISTRSENENLMKELKKEQERVSDLETINSSIENLLKDKEQEKVQMKEEAKITVEMLQTQLKELNETVVSLCNDQE 2459
Cdd:pfam10174 329 LKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQKKIENLQE 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2460 VSKTKEQNLGS---QVQTLELEKAqllqdlgeaknkyiifqSSVNALTQEVEAgkqkLEKGEKEIRTLKEQLKSQEQLvc 2536
Cdd:pfam10174 409 QLRDKDKQLAGlkeRVKSLQTDSS-----------------NTDTALTTLEEA----LSEKERIIERLKEQREREDRE-- 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2537 KLAQVEGEQQlwqkqklELRNvtmaLEQKVQVLQSENNTLQSTYEALQNSHKSLESelgliklekvALVERVSTISGKEA 2616
Cdd:pfam10174 466 RLEELESLKK-------ENKD----LKEKVSALQPELTEKESSLIDLKEHASSLAS----------SGLKKDSKLKSLEI 524
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2617 ELQRELRDMLQKTTQLSEDYNKEKNrlteevevlreelQNTKAAHLKSVNQLEKELQR-------AQGKIKLMLKSCRQL 2689
Cdd:pfam10174 525 AVEQKKEECSKLENQLKKAHNAEEA-------------VRTNPEINDRIRLLEQEVARykeesgkAQAEVERLLGILREV 591
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 2690 EGEKEMLQKELSQLE--AAQQQRAGSLVDSNVDEVMTENKALK-ETLEEKVKEADKYLDKYCSLLISH--EELEKAKEIL 2764
Cdd:pfam10174 592 ENEKNDKDKKIAELEslTLRQMKEQNKKVANIKHGQQEMKKKGaQLLEEARRREDNLADNSQQLQLEElmGALEKTRQEL 671
|
570
....*....|..
gi 189458891 2765 EIEVARLKSRQS 2776
Cdd:pfam10174 672 DATKARLSSTQQ 683
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
16-183 |
9.67e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.59 E-value: 9.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 16 ALQKIQELEGQLEKLKKEKQQRQFQLDSLEAALQKQKQKVEDGKTEGADLKRENQRLMEICEHLEKSRQKLSHELQVKES 95
Cdd:TIGR02169 838 LQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRK 917
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189458891 96 QVNLQESQLSSCKKQIEKLEQELKRCKSEFERSQQVAQSADVSLNPCSTPQKLFATPLTPSSTYEDLKEKYNKEVEERKR 175
Cdd:TIGR02169 918 RLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAK 997
|
....*...
gi 189458891 176 LEEEVKAL 183
Cdd:TIGR02169 998 LEEERKAI 1005
|
|
| |
