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Conserved domains on  [gi|124486765|ref|NP_001074790|]
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sister chromatid cohesion protein PDS5 homolog A [Mus musculus]

Protein Classification

sister chromatid cohesion protein PDS5( domain architecture ID 15331138)

sister chromatid cohesion protein PDS5 is essential for the establishment and maintenance of sister chromatid cohesion at centromere proximal and distal regions during S phase; also required for chromosomal condensation.

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PDS5 pfam20168
Sister chromatid cohesion protein PDS5 protein; This entry represents the Sister chromatid ...
38-1108 0e+00

Sister chromatid cohesion protein PDS5 protein; This entry represents the Sister chromatid cohesion protein PDS5. The large PDS5 molecule is exclusively alpha helical, composed of a large number of HEAT-like repeats and helical extensions/additions that deviate from the HEAT repeat pattern.


:

Pssm-ID: 466319 [Multi-domain]  Cd Length: 1051  Bit Score: 1108.04  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765    38 DEMIKRLKMVVKTFMDMDQDSEDEKQqYLPLALHLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTShDKLKDIFL 117
Cdd:pfam20168    1 DELLKRLKALHEELSDLDQEDVDLKS-LDPVAKDLVSPKLLKHKDKGVRALVACCLADILRLYAPDAPYTD-DQLKDIFK 78
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765   118 FITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFRTLFSVINNSHNTKVQMHMLDLMSSIIMEG 197
Cdd:pfam20168   79 LFISQLRGLADPDSPYFSQYFYLLESLAEVKSIVLILDLPDADDLITELFRTFFDLVSRPHSKKVENFMLDILSELIDES 158
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765   198 DGVTQELLDSILINLIPAHKNLNKQSFDLAKVLLKRTVQTIEACIANFFNQVLVLGRSSVSDLSEHVFDLIQELFAIDPQ 277
Cdd:pfam20168  159 DSLPQEVLDLILAQFLRKKKKENPPAFRLAVDVCNACADKLQRYVCQYFSEILLEGDESDLELLKKAHDLILELWRIAPS 238
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765   278 LLLSVMPQLEFKLKSNDGEERLAVVRLLAKLFGSKD-SDLATQNRPLWQCFLGRFNDIHVPVRLESVKFASHCLMNHPDL 356
Cdd:pfam20168  239 LLLNVIPQLEEELKADDVDIRLLATETLGRMFSEPGgSDLAKQYPSLWKAWLGRFNDKSVAVRIAWVEAAKQILLNHPDL 318
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765   357 AKDLTEYLKVRSHDPEEAIRHDVIVTIITAAKRDLALVNDQ-LLGFVRERTLDKRWRVRKEAMMGLAQLYKKYCLHGEAG 435
Cdd:pfam20168  319 RSEILEALKDRLLDPDEKVRLAAVKAIGDLDYETLLHVVSEkLLKTLAERLRDKKPSVRKEALKTLAKLYNVAYGEIEEG 398
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765   436 -KEAAEKVSWIKDKLLHIYYQNSIDDKLLVEKIFAQYLVPHNLETEERMKCLYYLYASLDPNAVKALNEMWKCQNMLRSH 514
Cdd:pfam20168  399 dEEAIEKFGWIPNKILHLYYINDPEIRALVERVLFEYLLPALLDDEERVKRLLTLLSHLDEKAKKAFNAILKRQSRLQKA 478
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765   515 VRELLDLHKQ------PTSEANCSAMFGKLMTIAKNLPDPGKAQDFVKKFNQVlgDDEKLRSQLELLISPTCSCKQADVC 588
Cdd:pfam20168  479 LRKFLDLCEKyngvidDEEEEIKKKLEKIIQWLSASFPDPSKAEEDLQKFAKL--NDKRLYKLLRTCIDPDSDYKTIEKA 556
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765   589 VREIARKLanpKQPTNPFLEMVKFLLERIAPVHIDSEAISALVKLMNKSIEGTADDEEEGVspdsairsglELLKVLSFT 668
Cdd:pfam20168  557 RKELLKRL---GDSKSSLLETLKLLLYRSSPLIVNKSSIPALLKLLRSSESGNSELANESS----------ELLKQISKV 623
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765   669 HPTSFHSAEtyESLLQCLRMEDDKVAEAAIQIFRNTGHKIETDLPQIRStLIPILHQKAKRGTPHQAKQAVHCIHAIF-S 747
Cdd:pfam20168  624 FPAVFKGHV--KELVKLLKDEDPDVVEDALQALAKVGKKFPEELPTDSK-FIERLKRFALEGTPRQAKYAVRILAALAgD 700
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765   748 NKEVQLAQIFEPLSRSLNADVPEqLITPLVSLGHISMLAPDQFaSPMKSVVANFIVKDLLMNDRSTGE--KNGKLWSPDE 825
Cdd:pfam20168  701 EKESVFKDLVEKLLKPLNLASPN-LLTHLASLGQIALYAPDVF-EDHSEEITSFIVKDLLLKNRTDEEddDDDDEWVDDE 778
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765   826 EVSPEVLAKVQAIKLLVRWLLGMKN--NQSKSANSTLRLLSAMLVSEGDLTEQKRISKSDMSRLRLAAGSAIMKLAQEPC 903
Cdd:pfam20168  779 ELDEECKAKILALKLLVNRLLGLADdeEAEEVAKPVLKLLFAILDNEGELVEDKTTSPAEKSRLRLAAALSLLKLAREPR 858
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765   904 YHEIITPEQFQLCALVINDECYQVRQIFAQKLHKALVKLLLPLEYMAIFALCAKDPVKERRAHARQCLLKNISIRREyik 983
Cdd:pfam20168  859 YDKLITPEDFNLLALLVQDPCYEVRERFLKKLHKYLKKNRLPPRFLAIFFLAAHEPEKELKEQVKTWIRSRARRRRK--- 935
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765   984 qnpmatEKLLSLLPEYVVPYMIHLLAHDPDFTRSQDVDQLRDIKECLWFMLEVLMTkNENNSHAFMkkMAENIKLTRDAQ 1063
Cdd:pfam20168  936 ------AKLKTLLPEYSLPRLIHLLAHHPDFSSDDNEEDLKDFAKYLEFYLDLVAT-EENISLLYY--LAQRIKQVRDAV 1006
                         1050      1060      1070      1080
                   ....*....|....*....|....*....|....*....|....*...
gi 124486765  1064 SPDESktnEKLYTVCDVALCVINSKSALCN---ADSPKDPVLPMKFFT 1108
Cdd:pfam20168 1007 DPDSS---ENLYVLSDLAQLIIKRLAKQKGwslQTYPGKVKLPSDLFK 1051
 
Name Accession Description Interval E-value
PDS5 pfam20168
Sister chromatid cohesion protein PDS5 protein; This entry represents the Sister chromatid ...
38-1108 0e+00

Sister chromatid cohesion protein PDS5 protein; This entry represents the Sister chromatid cohesion protein PDS5. The large PDS5 molecule is exclusively alpha helical, composed of a large number of HEAT-like repeats and helical extensions/additions that deviate from the HEAT repeat pattern.


Pssm-ID: 466319 [Multi-domain]  Cd Length: 1051  Bit Score: 1108.04  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765    38 DEMIKRLKMVVKTFMDMDQDSEDEKQqYLPLALHLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTShDKLKDIFL 117
Cdd:pfam20168    1 DELLKRLKALHEELSDLDQEDVDLKS-LDPVAKDLVSPKLLKHKDKGVRALVACCLADILRLYAPDAPYTD-DQLKDIFK 78
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765   118 FITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFRTLFSVINNSHNTKVQMHMLDLMSSIIMEG 197
Cdd:pfam20168   79 LFISQLRGLADPDSPYFSQYFYLLESLAEVKSIVLILDLPDADDLITELFRTFFDLVSRPHSKKVENFMLDILSELIDES 158
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765   198 DGVTQELLDSILINLIPAHKNLNKQSFDLAKVLLKRTVQTIEACIANFFNQVLVLGRSSVSDLSEHVFDLIQELFAIDPQ 277
Cdd:pfam20168  159 DSLPQEVLDLILAQFLRKKKKENPPAFRLAVDVCNACADKLQRYVCQYFSEILLEGDESDLELLKKAHDLILELWRIAPS 238
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765   278 LLLSVMPQLEFKLKSNDGEERLAVVRLLAKLFGSKD-SDLATQNRPLWQCFLGRFNDIHVPVRLESVKFASHCLMNHPDL 356
Cdd:pfam20168  239 LLLNVIPQLEEELKADDVDIRLLATETLGRMFSEPGgSDLAKQYPSLWKAWLGRFNDKSVAVRIAWVEAAKQILLNHPDL 318
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765   357 AKDLTEYLKVRSHDPEEAIRHDVIVTIITAAKRDLALVNDQ-LLGFVRERTLDKRWRVRKEAMMGLAQLYKKYCLHGEAG 435
Cdd:pfam20168  319 RSEILEALKDRLLDPDEKVRLAAVKAIGDLDYETLLHVVSEkLLKTLAERLRDKKPSVRKEALKTLAKLYNVAYGEIEEG 398
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765   436 -KEAAEKVSWIKDKLLHIYYQNSIDDKLLVEKIFAQYLVPHNLETEERMKCLYYLYASLDPNAVKALNEMWKCQNMLRSH 514
Cdd:pfam20168  399 dEEAIEKFGWIPNKILHLYYINDPEIRALVERVLFEYLLPALLDDEERVKRLLTLLSHLDEKAKKAFNAILKRQSRLQKA 478
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765   515 VRELLDLHKQ------PTSEANCSAMFGKLMTIAKNLPDPGKAQDFVKKFNQVlgDDEKLRSQLELLISPTCSCKQADVC 588
Cdd:pfam20168  479 LRKFLDLCEKyngvidDEEEEIKKKLEKIIQWLSASFPDPSKAEEDLQKFAKL--NDKRLYKLLRTCIDPDSDYKTIEKA 556
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765   589 VREIARKLanpKQPTNPFLEMVKFLLERIAPVHIDSEAISALVKLMNKSIEGTADDEEEGVspdsairsglELLKVLSFT 668
Cdd:pfam20168  557 RKELLKRL---GDSKSSLLETLKLLLYRSSPLIVNKSSIPALLKLLRSSESGNSELANESS----------ELLKQISKV 623
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765   669 HPTSFHSAEtyESLLQCLRMEDDKVAEAAIQIFRNTGHKIETDLPQIRStLIPILHQKAKRGTPHQAKQAVHCIHAIF-S 747
Cdd:pfam20168  624 FPAVFKGHV--KELVKLLKDEDPDVVEDALQALAKVGKKFPEELPTDSK-FIERLKRFALEGTPRQAKYAVRILAALAgD 700
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765   748 NKEVQLAQIFEPLSRSLNADVPEqLITPLVSLGHISMLAPDQFaSPMKSVVANFIVKDLLMNDRSTGE--KNGKLWSPDE 825
Cdd:pfam20168  701 EKESVFKDLVEKLLKPLNLASPN-LLTHLASLGQIALYAPDVF-EDHSEEITSFIVKDLLLKNRTDEEddDDDDEWVDDE 778
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765   826 EVSPEVLAKVQAIKLLVRWLLGMKN--NQSKSANSTLRLLSAMLVSEGDLTEQKRISKSDMSRLRLAAGSAIMKLAQEPC 903
Cdd:pfam20168  779 ELDEECKAKILALKLLVNRLLGLADdeEAEEVAKPVLKLLFAILDNEGELVEDKTTSPAEKSRLRLAAALSLLKLAREPR 858
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765   904 YHEIITPEQFQLCALVINDECYQVRQIFAQKLHKALVKLLLPLEYMAIFALCAKDPVKERRAHARQCLLKNISIRREyik 983
Cdd:pfam20168  859 YDKLITPEDFNLLALLVQDPCYEVRERFLKKLHKYLKKNRLPPRFLAIFFLAAHEPEKELKEQVKTWIRSRARRRRK--- 935
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765   984 qnpmatEKLLSLLPEYVVPYMIHLLAHDPDFTRSQDVDQLRDIKECLWFMLEVLMTkNENNSHAFMkkMAENIKLTRDAQ 1063
Cdd:pfam20168  936 ------AKLKTLLPEYSLPRLIHLLAHHPDFSSDDNEEDLKDFAKYLEFYLDLVAT-EENISLLYY--LAQRIKQVRDAV 1006
                         1050      1060      1070      1080
                   ....*....|....*....|....*....|....*....|....*...
gi 124486765  1064 SPDESktnEKLYTVCDVALCVINSKSALCN---ADSPKDPVLPMKFFT 1108
Cdd:pfam20168 1007 DPDSS---ENLYVLSDLAQLIIKRLAKQKGwslQTYPGKVKLPSDLFK 1051
PDS5 cd19953
Sister chromatid cohesion protein PDS5; Pds5 plays a crucial role in sister chromatid cohesion. ...
40-670 0e+00

Sister chromatid cohesion protein PDS5; Pds5 plays a crucial role in sister chromatid cohesion. Together with WapI and Scc3, it is involved in the release of the cohesin complex from chromosomes during S phase. The core of the cohesin complex consists of a coiled-coiled heterodimer of Smc1 and Smc30, together with Scc1 (also called kleisin). Pds5 interacts with Scc1 via a conserved patch on the surface of its heat repeats. Pds5 also promotes the acetylation of Smc3 that protects cohesin from releasing activity in G2 phase.


Pssm-ID: 410996 [Multi-domain]  Cd Length: 630  Bit Score: 684.64  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765   40 MIKRLKMVVKTFMDMDQDSEDeKQQYLPLALHLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTShDKLKDIFLFI 119
Cdd:cd19953     1 LLKRLKALHEELSELDQDEVD-LESLEPVAKELVSPKLLKHKDKGVRALVACCLADILRLYAPDAPYTD-DQLKDIFKLF 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765  120 TRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFRTLFSVINNSHNTKVQMHMLDLMSSIIMEGDG 199
Cdd:cd19953    79 ISQLKGLLDPDSPYFSQYFYLLESLAEVKSIVLLLDLPDADELILELFKTFFDLVRDDHPKNVENLMLDILVELIDESES 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765  200 VTQELLDSILINLIPAHKNLNKQSFDLAKVLLKRTVQTIEACIANFFNQVLVLG-----RSSVSDLSEHVFDLIQELFAI 274
Cdd:cd19953   159 VPQEVLDIILAQFLKKNKSENPPAYRLAVEVCERCSDKLQRYVTQFFSEVLVDAsteedSEEDSEELEKAHELIYELWRI 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765  275 DPQLLLSVMPQLEFKLKSNDGEERLAVVRLLAKLFGSKDSD-LATQNRPLWQCFLGRFNDIHVPVRLESVKFASHCLMNH 353
Cdd:cd19953   239 APELLLSVIPQLEEELKADDVDVRLLATKLLGKMFAEKGSAgFAQTYPSLWKEFLGRFNDKSPEVRLAWVESAKHILLNH 318
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765  354 PDLAKDLTEYLKVRSHDPEEAIRHDVIVTIITAAKRDLAL-VNDQLLGFVRERTLDKRWRVRKEAMMGLAQLYKKYCLHG 432
Cdd:cd19953   319 PDLAEDILEALKKRLLDPDEKVRLAAVKAICDLAYEDLLHkVPEELLSTLAERLRDKKASVRKEALQGLARLYKVAYGEI 398
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765  433 EAGKEAA-EKVSWIKDKLLHIYYQNSIDDKLLVEKIFAQYLVPHNLETEERMKCLYYLYASLDPNAVKALNEMWKCQNML 511
Cdd:cd19953   399 EEGDETAiKQFGWIPSKILHLYYINDPEINLLVERVLFEYLLPLSLDDEERVKRLLLLFSSLDDKAKKAFFAILKRQQRL 478
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765  512 RSHVRELLDLHKQP------TSEANCSAMFGKLMTIAKNLPDPGKAQDFVKKFNQVlgDDEKLRSQLELLISPTCSCKQA 585
Cdd:cd19953   479 RKELQKYLDLCEKYnggvieDEEEVEKKLEKLIKWLSASFPDPLKAEEDLQKFAKL--NDRRIYKLLKTCLDPETDYKTV 556
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765  586 DVCVREIARKLANPKqpTNPFLEMVKFLLERIAPVHIDSEAISALVKLMNKSiegtaddeeEGVSPDSAIRSGLELLKVL 665
Cdd:cd19953   557 RKARKELLKRLGDPS--KASLLETLKILLYRSSPLIFNKSNVPALLKILKSS---------DGSDNEKLASAALELLLEI 625

                  ....*
gi 124486765  666 SFTHP 670
Cdd:cd19953   626 SKVFP 630
 
Name Accession Description Interval E-value
PDS5 pfam20168
Sister chromatid cohesion protein PDS5 protein; This entry represents the Sister chromatid ...
38-1108 0e+00

Sister chromatid cohesion protein PDS5 protein; This entry represents the Sister chromatid cohesion protein PDS5. The large PDS5 molecule is exclusively alpha helical, composed of a large number of HEAT-like repeats and helical extensions/additions that deviate from the HEAT repeat pattern.


Pssm-ID: 466319 [Multi-domain]  Cd Length: 1051  Bit Score: 1108.04  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765    38 DEMIKRLKMVVKTFMDMDQDSEDEKQqYLPLALHLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTShDKLKDIFL 117
Cdd:pfam20168    1 DELLKRLKALHEELSDLDQEDVDLKS-LDPVAKDLVSPKLLKHKDKGVRALVACCLADILRLYAPDAPYTD-DQLKDIFK 78
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765   118 FITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFRTLFSVINNSHNTKVQMHMLDLMSSIIMEG 197
Cdd:pfam20168   79 LFISQLRGLADPDSPYFSQYFYLLESLAEVKSIVLILDLPDADDLITELFRTFFDLVSRPHSKKVENFMLDILSELIDES 158
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765   198 DGVTQELLDSILINLIPAHKNLNKQSFDLAKVLLKRTVQTIEACIANFFNQVLVLGRSSVSDLSEHVFDLIQELFAIDPQ 277
Cdd:pfam20168  159 DSLPQEVLDLILAQFLRKKKKENPPAFRLAVDVCNACADKLQRYVCQYFSEILLEGDESDLELLKKAHDLILELWRIAPS 238
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765   278 LLLSVMPQLEFKLKSNDGEERLAVVRLLAKLFGSKD-SDLATQNRPLWQCFLGRFNDIHVPVRLESVKFASHCLMNHPDL 356
Cdd:pfam20168  239 LLLNVIPQLEEELKADDVDIRLLATETLGRMFSEPGgSDLAKQYPSLWKAWLGRFNDKSVAVRIAWVEAAKQILLNHPDL 318
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765   357 AKDLTEYLKVRSHDPEEAIRHDVIVTIITAAKRDLALVNDQ-LLGFVRERTLDKRWRVRKEAMMGLAQLYKKYCLHGEAG 435
Cdd:pfam20168  319 RSEILEALKDRLLDPDEKVRLAAVKAIGDLDYETLLHVVSEkLLKTLAERLRDKKPSVRKEALKTLAKLYNVAYGEIEEG 398
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765   436 -KEAAEKVSWIKDKLLHIYYQNSIDDKLLVEKIFAQYLVPHNLETEERMKCLYYLYASLDPNAVKALNEMWKCQNMLRSH 514
Cdd:pfam20168  399 dEEAIEKFGWIPNKILHLYYINDPEIRALVERVLFEYLLPALLDDEERVKRLLTLLSHLDEKAKKAFNAILKRQSRLQKA 478
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765   515 VRELLDLHKQ------PTSEANCSAMFGKLMTIAKNLPDPGKAQDFVKKFNQVlgDDEKLRSQLELLISPTCSCKQADVC 588
Cdd:pfam20168  479 LRKFLDLCEKyngvidDEEEEIKKKLEKIIQWLSASFPDPSKAEEDLQKFAKL--NDKRLYKLLRTCIDPDSDYKTIEKA 556
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765   589 VREIARKLanpKQPTNPFLEMVKFLLERIAPVHIDSEAISALVKLMNKSIEGTADDEEEGVspdsairsglELLKVLSFT 668
Cdd:pfam20168  557 RKELLKRL---GDSKSSLLETLKLLLYRSSPLIVNKSSIPALLKLLRSSESGNSELANESS----------ELLKQISKV 623
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765   669 HPTSFHSAEtyESLLQCLRMEDDKVAEAAIQIFRNTGHKIETDLPQIRStLIPILHQKAKRGTPHQAKQAVHCIHAIF-S 747
Cdd:pfam20168  624 FPAVFKGHV--KELVKLLKDEDPDVVEDALQALAKVGKKFPEELPTDSK-FIERLKRFALEGTPRQAKYAVRILAALAgD 700
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765   748 NKEVQLAQIFEPLSRSLNADVPEqLITPLVSLGHISMLAPDQFaSPMKSVVANFIVKDLLMNDRSTGE--KNGKLWSPDE 825
Cdd:pfam20168  701 EKESVFKDLVEKLLKPLNLASPN-LLTHLASLGQIALYAPDVF-EDHSEEITSFIVKDLLLKNRTDEEddDDDDEWVDDE 778
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765   826 EVSPEVLAKVQAIKLLVRWLLGMKN--NQSKSANSTLRLLSAMLVSEGDLTEQKRISKSDMSRLRLAAGSAIMKLAQEPC 903
Cdd:pfam20168  779 ELDEECKAKILALKLLVNRLLGLADdeEAEEVAKPVLKLLFAILDNEGELVEDKTTSPAEKSRLRLAAALSLLKLAREPR 858
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765   904 YHEIITPEQFQLCALVINDECYQVRQIFAQKLHKALVKLLLPLEYMAIFALCAKDPVKERRAHARQCLLKNISIRREyik 983
Cdd:pfam20168  859 YDKLITPEDFNLLALLVQDPCYEVRERFLKKLHKYLKKNRLPPRFLAIFFLAAHEPEKELKEQVKTWIRSRARRRRK--- 935
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765   984 qnpmatEKLLSLLPEYVVPYMIHLLAHDPDFTRSQDVDQLRDIKECLWFMLEVLMTkNENNSHAFMkkMAENIKLTRDAQ 1063
Cdd:pfam20168  936 ------AKLKTLLPEYSLPRLIHLLAHHPDFSSDDNEEDLKDFAKYLEFYLDLVAT-EENISLLYY--LAQRIKQVRDAV 1006
                         1050      1060      1070      1080
                   ....*....|....*....|....*....|....*....|....*...
gi 124486765  1064 SPDESktnEKLYTVCDVALCVINSKSALCN---ADSPKDPVLPMKFFT 1108
Cdd:pfam20168 1007 DPDSS---ENLYVLSDLAQLIIKRLAKQKGwslQTYPGKVKLPSDLFK 1051
PDS5 cd19953
Sister chromatid cohesion protein PDS5; Pds5 plays a crucial role in sister chromatid cohesion. ...
40-670 0e+00

Sister chromatid cohesion protein PDS5; Pds5 plays a crucial role in sister chromatid cohesion. Together with WapI and Scc3, it is involved in the release of the cohesin complex from chromosomes during S phase. The core of the cohesin complex consists of a coiled-coiled heterodimer of Smc1 and Smc30, together with Scc1 (also called kleisin). Pds5 interacts with Scc1 via a conserved patch on the surface of its heat repeats. Pds5 also promotes the acetylation of Smc3 that protects cohesin from releasing activity in G2 phase.


Pssm-ID: 410996 [Multi-domain]  Cd Length: 630  Bit Score: 684.64  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765   40 MIKRLKMVVKTFMDMDQDSEDeKQQYLPLALHLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTShDKLKDIFLFI 119
Cdd:cd19953     1 LLKRLKALHEELSELDQDEVD-LESLEPVAKELVSPKLLKHKDKGVRALVACCLADILRLYAPDAPYTD-DQLKDIFKLF 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765  120 TRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFRTLFSVINNSHNTKVQMHMLDLMSSIIMEGDG 199
Cdd:cd19953    79 ISQLKGLLDPDSPYFSQYFYLLESLAEVKSIVLLLDLPDADELILELFKTFFDLVRDDHPKNVENLMLDILVELIDESES 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765  200 VTQELLDSILINLIPAHKNLNKQSFDLAKVLLKRTVQTIEACIANFFNQVLVLG-----RSSVSDLSEHVFDLIQELFAI 274
Cdd:cd19953   159 VPQEVLDIILAQFLKKNKSENPPAYRLAVEVCERCSDKLQRYVTQFFSEVLVDAsteedSEEDSEELEKAHELIYELWRI 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765  275 DPQLLLSVMPQLEFKLKSNDGEERLAVVRLLAKLFGSKDSD-LATQNRPLWQCFLGRFNDIHVPVRLESVKFASHCLMNH 353
Cdd:cd19953   239 APELLLSVIPQLEEELKADDVDVRLLATKLLGKMFAEKGSAgFAQTYPSLWKEFLGRFNDKSPEVRLAWVESAKHILLNH 318
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765  354 PDLAKDLTEYLKVRSHDPEEAIRHDVIVTIITAAKRDLAL-VNDQLLGFVRERTLDKRWRVRKEAMMGLAQLYKKYCLHG 432
Cdd:cd19953   319 PDLAEDILEALKKRLLDPDEKVRLAAVKAICDLAYEDLLHkVPEELLSTLAERLRDKKASVRKEALQGLARLYKVAYGEI 398
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765  433 EAGKEAA-EKVSWIKDKLLHIYYQNSIDDKLLVEKIFAQYLVPHNLETEERMKCLYYLYASLDPNAVKALNEMWKCQNML 511
Cdd:cd19953   399 EEGDETAiKQFGWIPSKILHLYYINDPEINLLVERVLFEYLLPLSLDDEERVKRLLLLFSSLDDKAKKAFFAILKRQQRL 478
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765  512 RSHVRELLDLHKQP------TSEANCSAMFGKLMTIAKNLPDPGKAQDFVKKFNQVlgDDEKLRSQLELLISPTCSCKQA 585
Cdd:cd19953   479 RKELQKYLDLCEKYnggvieDEEEVEKKLEKLIKWLSASFPDPLKAEEDLQKFAKL--NDRRIYKLLKTCLDPETDYKTV 556
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124486765  586 DVCVREIARKLANPKqpTNPFLEMVKFLLERIAPVHIDSEAISALVKLMNKSiegtaddeeEGVSPDSAIRSGLELLKVL 665
Cdd:cd19953   557 RKARKELLKRLGDPS--KASLLETLKILLYRSSPLIFNKSNVPALLKILKSS---------DGSDNEKLASAALELLLEI 625

                  ....*
gi 124486765  666 SFTHP 670
Cdd:cd19953   626 SKVFP 630
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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