|
Name |
Accession |
Description |
Interval |
E-value |
| GOLGA2L5 |
pfam15070 |
Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein ... |
369-893 |
0e+00 |
|
Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein family remains unknown. This family of proteins is thought to be found in the Golgi apparatus of eukaryotes.
Pssm-ID: 464485 [Multi-domain] Cd Length: 521 Bit Score: 712.22 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 369 QLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPP--AGP 446
Cdd:pfam15070 1 QLMESLKQLQTERDQYAENLKEEGAVWQQKMQQLSEQVRTLREEKERSVSQVQELETSLAELKNQAAVPPAEEEQppAGP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 447 SEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRA 526
Cdd:pfam15070 81 SEEEQRLQEEAEQLQKELEALAGQLQAQVQDNEQLSRLNQEQEQRLLELERAAERWGEQAEDRKQILEDMQSDRATISRA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 527 LSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSH 606
Cdd:pfam15070 161 LSQNRELKEQLAELQNGFVKLTNENMELTSALQSEQHVKKELAKKLGQLQEELGELKETLELKSQEAQSLQEQRDQYLAH 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 607 LQQYAAAYQqhlaayeQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAELARQELQEAQERLKATSQENQQLQAQLSL 686
Cdd:pfam15070 241 LQQYVAAYQ-------QLASEKEELHKQYLLQTQLMDRLQHEEVQGKVAAEMARQELQETQERLEALTQQNQQLQAQLSL 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 687 LVLPGE-GDVDQEEEDEEVPQSSLAIPEDLDSREAMVAFFNAAIARAEEEQARLRVQLKEQKARCRSLSHLAAPVQSKLE 765
Cdd:pfam15070 314 LANPGEgDGLESEEEEEEAPRPSLSIPEDFESREAMVAFFNSALAQAEEERAELRRQLKEQKRRCRRLAQQAAPAQEEPE 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 766 KEAVVPRNVDDSASEESNQALHVAMEKLQSRFLEVMQEKVELKERVEELEHCCIQLSGETDTIGEYIALYQNQRAVLKAR 845
Cdd:pfam15070 394 HEAHAPGTGGDSVPVEVHQALQVAMEKLQSRFTELMQEKADLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAILKQR 473
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 1676318910 846 HLEKEEYISRLAQDKEEMKVKLLELQELVLRLVNERNEWQGKFLAVSQ 893
Cdd:pfam15070 474 HREKEEYISRLAQDKEEMKVKLLELQELVLRLVGERNEWYGKYLAAAQ 521
|
|
| GM130_C |
pfam19046 |
GM130 C-terminal binding motif; This entry represents the C-terminal motif from the GM130 ... |
938-983 |
8.68e-27 |
|
GM130 C-terminal binding motif; This entry represents the C-terminal motif from the GM130 protein that is bound by the GRASP65 PDZ domain pfam04495.
Pssm-ID: 465957 Cd Length: 46 Bit Score: 103.23 E-value: 8.68e-27
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 1676318910 938 APHENPTAQQIMQLLREIQNPRERPGLGSNPCIPFFYRADENDEVK 983
Cdd:pfam19046 1 SPPENPTAQQIMQLLPEIQNPQEHPGLGSNPCIPFFYRADENDEVK 46
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
253-883 |
6.50e-20 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 95.77 E-value: 6.50e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 253 VGELERTLSTVSTQQKQADRYnKDLTKERDALKLELYKNSKsnEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEm 332
Cdd:COG1196 195 LGELERQLEPLERQAEKAERY-RELKEELKELEAELLLLKL--RELEAELEELEAELEELEAELEELEAELAELEAELE- 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 333 selllqqfssqssaaggnEQLQHAMEERAQLETHVSQLMESLKQLqverdqyaENLKGESAMWQQRVQQMAEQVHTLKEE 412
Cdd:COG1196 271 ------------------ELRLELEELELELEEAQAEEYELLAEL--------ARLEQDIARLEERRRELEERLEELEEE 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 413 KEHRERQVQELETSLAALRSQMEEPPPPEPpagpsEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRL 492
Cdd:COG1196 325 LAELEEELEELEEELEELEEELEEAEEELE-----EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELA 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 493 LELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKL 572
Cdd:COG1196 400 AQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAAL 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 573 GELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQG 652
Cdd:COG1196 480 AELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVA 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 653 KMAAELARQELQEAQERLKATSQENQQLQAQLSLLVLPGEGDVDQEEEDEEVPQSSLAIPEDLDSREAMVAFFNAAIARA 732
Cdd:COG1196 560 AAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRA 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 733 EEEQARLRVQLkeqkarcrslshLAAPVQSKLEKEAVVPRNVDDSASEESNQALHVAMEKLQSRFLEVMQEKVELKERVE 812
Cdd:COG1196 640 VTLAGRLREVT------------LEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEER 707
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1676318910 813 ELEHCCIQLSGETDTIGEYIALYQNQRAVLKARHLEKEEYISRLAQDKEEMKVKLLELQELVLRLVNERNE 883
Cdd:COG1196 708 ELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
142-676 |
3.35e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 80.49 E-value: 3.35e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 142 ELENRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLDQLEKEKKDYQQkLAKEQGSLREQLQVHIQTIGILVSEKAEL 221
Cdd:TIGR02168 299 RLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEE-LKEELESLEAELEELEAELEELESRLEEL 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 222 QTALAHTQQAARQKAGESEDLASRLQSSRQRV----GELERTLSTVSTQQKQADRYNKDLTKER-DALKLELYKNSKSNE 296
Cdd:TIGR02168 378 EEQLETLRSKVAQLELQIASLNNEIERLEARLerleDRRERLQQEIEELLKKLEEAELKELQAElEELEEELEELQEELE 457
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 297 DLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFS-----------SQSSAAGGNEQLQHAMEERAQLET 365
Cdd:TIGR02168 458 RLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEgfsegvkallkNQSGLSGILGVLSELISVDEGYEA 537
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 366 HVS-------------------QLMESLKQ----------LQVERDQYAENLKGESAMWQQRVQQMAEQVHT-------- 408
Cdd:TIGR02168 538 AIEaalggrlqavvvenlnaakKAIAFLKQnelgrvtflpLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKfdpklrka 617
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 409 -------------------LKEEKEHRERQV---------------QELETSLAALRSQMEEPPPPEPPAGPSEAEEQLQ 454
Cdd:TIGR02168 618 lsyllggvlvvddldnaleLAKKLRPGYRIVtldgdlvrpggvitgGSAKTNSSILERRREIEELEEKIEELEEKIAELE 697
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 455 GEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNR--- 531
Cdd:TIGR02168 698 KALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEeel 777
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 532 -ELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQY 610
Cdd:TIGR02168 778 aEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESL 857
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1676318910 611 AAAY-----------QQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEvQGKMAAELARQELQEAQERLKATSQE 676
Cdd:TIGR02168 858 AAEIeeleelieeleSELEALLNERASLEEALALLRSELEELSEELRELE-SKRSELRRELEELREKLAQLELRLEG 933
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
162-676 |
9.70e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 79.21 E-value: 9.70e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 162 KQLSSTIEELKQQNQDTLDQLEKEKKDYQQkLAKEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESED 241
Cdd:COG1196 242 EELEAELEELEAELEELEAELAELEAELEE-LRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEE 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 242 LASRLQSSRQRVGELERTLSTVSTQQKQADrynkdltKERDALKLELyknsksnEDLRQQNSELEEKLRVLVAEKAAAQl 321
Cdd:COG1196 321 LEEELAELEEELEELEEELEELEEELEEAE-------EELEEAEAEL-------AEAEEALLEAEAELAEAEEELEELA- 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 322 gVEELQKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGEsamwQQRVQQ 401
Cdd:COG1196 386 -EELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL----EEEEEA 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 402 MAEQVHTLKEEKEHRERQVQELETSLAALRS------QMEEPPPPEPPAGPSEAEEQLQGEVEQLHKELERLTGQLRAQV 475
Cdd:COG1196 461 LLELLAELLEEAALLEAALAELLEELAEAAArlllllEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAAL 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 476 QDNESLSHLNREQEgRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRE-------LKEQLAELQNGFVRLT 548
Cdd:COG1196 541 EAALAAALQNIVVE-DDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAigaavdlVASDLREADARYYVLG 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 549 NENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEK 628
Cdd:COG1196 620 DTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEAL 699
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 1676318910 629 EAIHKQLLLQTQLMDQLQHEEVQGKMAAELARQELQEAQERLKATSQE 676
Cdd:COG1196 700 LAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEEL 747
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
253-883 |
1.48e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 78.56 E-value: 1.48e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 253 VGELERTLSTVSTQQKQADRYnKDLTKERDALKLELYKNS-----KSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQ 327
Cdd:TIGR02168 195 LNELERQLKSLERQAEKAERY-KELKAELRELELALLVLRleelrEELEELQEELKEAEEELEELTAELQELEEKLEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 328 KK---LEMSELLLQQ--FSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLkgesAMWQQRVQQM 402
Cdd:TIGR02168 274 LEvseLEEEIEELQKelYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEEL----AELEEKLEEL 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 403 AEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEppAGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESL- 481
Cdd:TIGR02168 350 KEELESLEAELEELEAELEELESRLEELEEQLETLRSKV--AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELl 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 482 ----SHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSA 557
Cdd:TIGR02168 428 kkleEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEG 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 558 LQSEQHVKKELARKLGELQER--------------LGELKETVELKSQEAQglqeqrDQCLSHLQQYAAAYQQHLAAYEQ 623
Cdd:TIGR02168 508 VKALLKNQSGLSGILGVLSELisvdegyeaaieaaLGGRLQAVVVENLNAA------KKAIAFLKQNELGRVTFLPLDSI 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 624 LTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAELARQ----------ELQEAQERLK---------------------- 671
Cdd:TIGR02168 582 KGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSyllggvlvvdDLDNALELAKklrpgyrivtldgdlvrpggvi 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 672 --ATSQENQQLQAQLSLLVLPGEGDVDQEEEDEEVPQSSLAIPEDLDSREAMVAFFNAAIARAEEEQARLRVQLKEQKAR 749
Cdd:TIGR02168 662 tgGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAE 741
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 750 CRSLSHLAAPVQSKLEkEAVVPRNVDDSASEESNQALHVA---MEKLQSRFLEVMQEKVELKERVEELEHCCIQLSGETD 826
Cdd:TIGR02168 742 VEQLEERIAQLSKELT-ELEAEIEELEERLEEAEEELAEAeaeIEELEAQIEQLKEELKALREALDELRAELTLLNEEAA 820
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1676318910 827 TIGEYIALYQNQRA-------VLKARHLEKEEYISRLAQDKEEMKVKLLELQELVLRLVNERNE 883
Cdd:TIGR02168 821 NLRERLESLERRIAaterrleDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERAS 884
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
296-594 |
9.54e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.86 E-value: 9.54e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 296 EDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAggNEQLQHAMEERAQLETHVSQLMESLK 375
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISAL--RKDLARLEAEVEQLEERIAQLSKELT 757
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 376 QLQVERDQYAENLKGESAMWQQRVQQMAEqvhtLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAgpSEAEEQLQG 455
Cdd:TIGR02168 758 ELEAEIEELEERLEEAEEELAEAEAEIEE----LEAQIEQLKEELKALREALDELRAELTLLNEEAANL--RERLESLER 831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 456 EVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQ----AEERKQILESMQSDRTTISRALSQNR 531
Cdd:TIGR02168 832 RIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNEraslEEALALLRSELEELSEELRELESKRS 911
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1676318910 532 ELKEQLAELQNgfvRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQ 594
Cdd:TIGR02168 912 ELRRELEELRE---KLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEAR 971
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
142-872 |
4.59e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.47 E-value: 4.59e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 142 ELENRYQELAVALDssyvtNKQLSSTIEELKQQNqDTLDQLEKEKKDYQQKLAKEQgslrEQLQVHIQTIGILVSEKAEL 221
Cdd:TIGR02168 210 EKAERYKELKAELR-----ELELALLVLRLEELR-EELEELQEELKEAEEELEELT----AELQELEEKLEELRLEVSEL 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 222 QTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQ 301
Cdd:TIGR02168 280 EEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 302 NSELEEKLRVLVAEKAAAQLGVEELQKKLemSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVER 381
Cdd:TIGR02168 360 LEELEAELEELESRLEELEEQLETLRSKV--AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKE 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 382 DQYA-ENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPA-GPSEAEEQLQGEVEQ 459
Cdd:TIGR02168 438 LQAElEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLeGFSEGVKALLKNQSG 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 460 LHKELERLTGQLRAQ-------------------VQDNES----LSHLNREQEGRLLELEREAQRWSEQAEERKQILESM 516
Cdd:TIGR02168 518 LSGILGVLSELISVDegyeaaieaalggrlqavvVENLNAakkaIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNI 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 517 QSDRTTISRALSQNRELKEQLAELQNGFV------------RLTNENMEI--------------TSALQSEQHVKKELAR 570
Cdd:TIGR02168 598 EGFLGVAKDLVKFDPKLRKALSYLLGGVLvvddldnalelaKKLRPGYRIvtldgdlvrpggviTGGSAKTNSSILERRR 677
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 571 KLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEV 650
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELT 757
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 651 QGKMAAELARQELQEAQERLKATSQENQQLQAQLSLLVlpgegdvdqeeedeevpqsslaipEDLDSREAMVAFFNAAIA 730
Cdd:TIGR02168 758 ELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK------------------------EELKALREALDELRAELT 813
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 731 RAEEEQARLRVQLKEQKARCRSLSHLAAPVQSKLEKEavvprNVDDSASEESNQALHVAMEKLQSRFLEVMQEKVELKER 810
Cdd:TIGR02168 814 LLNEEAANLRERLESLERRIAATERRLEDLEEQIEEL-----SEDIESLAAEIEELEELIEELESELEALLNERASLEEA 888
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1676318910 811 VEELEHCCIQLSGETDTIGEyialyqnQRAVLKARHLEKEEYISRLAQDKEEMKVKLLELQE 872
Cdd:TIGR02168 889 LALLRSELEELSEELRELES-------KRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
230-613 |
5.66e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 70.10 E-value: 5.66e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 230 QAARQKAGESEDLASRLQSsrqRVGELERTLSTVSTQQKQADRYNKDLTKERDalkLELYKNSKSNEDLRQQNSELEEKL 309
Cdd:TIGR02169 173 EKALEELEEVEENIERLDL---IIDEKRQQLERLRREREKAERYQALLKEKRE---YEGYELLKEKEALERQKEAIERQL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 310 RVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLQ--------HAMEERAQ-----LETHVSQLMESLKQ 376
Cdd:TIGR02169 247 ASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRvkekigelEAEIASLErsiaeKERELEDAEERLAK 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 377 LQVERDQY---AENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPppeppagpsEAEEQL 453
Cdd:TIGR02169 327 LEAEIDKLlaeIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYR---------EKLEKL 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 454 QGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQnreL 533
Cdd:TIGR02169 398 KREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYD---L 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 534 KEQLAELQNgfvrltnenmEITSAlqseqhvKKELARKLGELQ---ERLGELKETVELKSQEAQGLQEQRDQCLSHLQQY 610
Cdd:TIGR02169 475 KEEYDRVEK----------ELSKL-------QRELAEAEAQARaseERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERY 537
|
...
gi 1676318910 611 AAA 613
Cdd:TIGR02169 538 ATA 540
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
109-670 |
7.84e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.58 E-value: 7.84e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 109 TESLRQLSQQLNGLVSESTSYINGEGLTSSNMKELENRYQELAVALDssyvtnkQLSSTIEELKQQNQDTLDQLEKEKKD 188
Cdd:COG1196 280 ELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELA-------ELEEELEELEEELEELEEELEEAEEE 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 189 YQQKLAKEQGSLREQLQvhiqtigiLVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQK 268
Cdd:COG1196 353 LEEAEAELAEAEEALLE--------AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELE 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 269 QADRYNKDLTKERDALKLELyknsksnedlrqqnSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAG 348
Cdd:COG1196 425 ELEEALAELEEEEEEEEEAL--------------EEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAA 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 349 GNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLA 428
Cdd:COG1196 491 ARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAK 570
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 429 ALRSQMEEPPPPEPPAGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLshlnrEQEGRLLELEREAQRWSEQAEE 508
Cdd:COG1196 571 AGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLL-----GRTLVAARLEAALRRAVTLAGR 645
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 509 RKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVEL 588
Cdd:COG1196 646 LREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEA 725
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 589 KSQEAQGLQEQRDQclsHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLqheevqGK--MAAElarQELQEA 666
Cdd:COG1196 726 LEEQLEAEREELLE---ELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL------GPvnLLAI---EEYEEL 793
|
....
gi 1676318910 667 QERL 670
Cdd:COG1196 794 EERY 797
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
136-467 |
5.26e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.00 E-value: 5.26e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 136 TSSNMKELENRYQELAVALDssyvtnkQLSSTIEELKQQNQDTLDQLEKEKKDYQQKlAKEQGSLREQLQVHIQTIGILV 215
Cdd:TIGR02168 675 RRREIEELEEKIEELEEKIA-------ELEKALAELRKELEELEEELEQLRKELEEL-SRQISALRKDLARLEAEVEQLE 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 216 SEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSN 295
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERL 826
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 296 EDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSsqssaaggnEQLQHAMEERAQLETHVSQLMESLK 375
Cdd:TIGR02168 827 ESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELE---------SELEALLNERASLEEALALLRSELE 897
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 376 QLQVERDQYAENLKGEsamwQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAAlRSQMEEPPPPEPPAGPSEAEEQLQG 455
Cdd:TIGR02168 898 ELSEELRELESKRSEL----RRELEELREKLAQLELRLEGLEVRIDNLQERLSE-EYSLTLEEAEALENKIEDDEEEARR 972
|
330
....*....|..
gi 1676318910 456 EVEQLHKELERL 467
Cdd:TIGR02168 973 RLKRLENKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
379-670 |
1.89e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.08 E-value: 1.89e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 379 VERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAgpSEAEEQLQGEVE 458
Cdd:TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARL--EAEVEQLEERIA 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 459 QLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQla 538
Cdd:TIGR02168 751 QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLES-- 828
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 539 eLQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRdqclshlqqyaaayQQHL 618
Cdd:TIGR02168 829 -LERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEAL--------------ALLR 893
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1676318910 619 AAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAELARQELQEAQERL 670
Cdd:TIGR02168 894 SELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
160-515 |
5.57e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.54 E-value: 5.57e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 160 TNKQLSSTIEELKQQnQDTLDQLEKEKKDY--QQKLAKEQGSLREQLQvHIQtIGILVSEKAELQTALAHTQQAARQKAG 237
Cdd:TIGR02168 177 TERKLERTRENLDRL-EDILNELERQLKSLerQAEKAERYKELKAELR-ELE-LALLVLRLEELREELEELQEELKEAEE 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 238 ESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKA 317
Cdd:TIGR02168 254 ELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLD 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 318 AAQLGVEELQKKLEmselllqqfssqssaaggneQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQ 397
Cdd:TIGR02168 334 ELAEELAELEEKLE--------------------ELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLEL 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 398 RVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGPSE---AEEQLQGEVEQLHKELERLTGQLRAQ 474
Cdd:TIGR02168 394 QIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEEleeELEELQEELERLEEALEELREELEEA 473
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 1676318910 475 VQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILES 515
Cdd:TIGR02168 474 EQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKN 514
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
238-587 |
1.35e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.38 E-value: 1.35e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 238 ESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKA 317
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELT 757
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 318 AAQLGVEELQKKLEMSELLLQQFSSQSSAAggNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYA---ENLKGESAM 394
Cdd:TIGR02168 758 ELEAEIEELEERLEEAEEELAEAEAEIEEL--EAQIEQLKEELKALREALDELRAELTLLNEEAANLRerlESLERRIAA 835
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 395 WQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEE-----PPPPEPPAGPSEAEEQLQGEVEQLHKELERLTG 469
Cdd:TIGR02168 836 TERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAllnerASLEEALALLRSELEELSEELRELESKRSELRR 915
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 470 QLRAQvqdNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTisralsQNRELKEQLAELQNGFVRLTN 549
Cdd:TIGR02168 916 ELEEL---REKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIED------DEEEARRRLKRLENKIKELGP 986
|
330 340 350
....*....|....*....|....*....|....*...
gi 1676318910 550 ENMEITSALQSEQHVKKELARKLGELQERLGELKETVE 587
Cdd:TIGR02168 987 VNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIE 1024
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
142-671 |
5.68e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 60.13 E-value: 5.68e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 142 ELENRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLDQLEKEKKDYQQKLAKEQGSLREQLQVHIQTIGILvsekAEL 221
Cdd:pfam15921 114 DLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVL----QEI 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 222 QTALAHTQQAARQKAGESEDLAS-RLQSSRQRVGELERTLSTvstqqkqadrynkdltkERDALKLELYKNSKSNEDLRq 300
Cdd:pfam15921 190 RSILVDFEEASGKKIYEHDSMSTmHFRSLGSAISKILRELDT-----------------EISYLKGRIFPVEDQLEALK- 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 301 qnSELEEKLRVLVAEKaaaQLGVEEL--QKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEeraQLETHVSQLMESLKQLQ 378
Cdd:pfam15921 252 --SESQNKIELLLQQH---QDRIEQLisEHEVEITGLTEKASSARSQANSIQSQLEIIQE---QARNQNSMYMRQLSDLE 323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 379 VERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMeepppPEPPAGPSEAEEQLQGEVE 458
Cdd:pfam15921 324 STVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQL-----QKLLADLHKREKELSLEKE 398
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 459 QLHKELERLTGqlraqvqDNESLSHLNREQEGRLLELER-EAQRWSEQAEERKQILESM---QSDRTTISRALSQNRELK 534
Cdd:pfam15921 399 QNKRLWDRDTG-------NSITIDHLRRELDDRNMEVQRlEALLKAMKSECQGQMERQMaaiQGKNESLEKVSSLTAQLE 471
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 535 EQLAELQNGFVRLTNENMEITSALQSEQHVK---KELARKLGELQERLGELKETVELKSQEAQGLQEQRDQcLSHLQQYA 611
Cdd:pfam15921 472 STKEMLRKVVEELTAKKMTLESSERTVSDLTaslQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDH-LRNVQTEC 550
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1676318910 612 AAYQQHLAayeqltsEKEAIHKQLLLQTQLMDQL--QHEEVQGKMAAELARQELQEAQERLK 671
Cdd:pfam15921 551 EALKLQMA-------EKDKVIEILRQQIENMTQLvgQHGRTAGAMQVEKAQLEKEINDRRLE 605
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
200-479 |
7.86e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.69 E-value: 7.86e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 200 LREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTK 279
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 280 ERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKL-----EMSELLLQQFSSQSSAAGGNEQLQ 354
Cdd:TIGR02168 762 EIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELtllneEAANLRERLESLERRIAATERRLE 841
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 355 HAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGesamWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQM 434
Cdd:TIGR02168 842 DLEEQIEELSEDIESLAAEIEELEELIEELESELEA----LLNERASLEEALALLRSELEELSEELRELESKRSELRREL 917
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 1676318910 435 EEPPppeppagpsEAEEQLQGEVEQLHKELERLTGQLRAQVQDNE 479
Cdd:TIGR02168 918 EELR---------EKLAQLELRLEGLEVRIDNLQERLSEEYSLTL 953
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
296-646 |
8.87e-09 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 59.59 E-value: 8.87e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 296 EDLRQQNSELEEKLrvlvaekAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLK 375
Cdd:PRK04863 789 EQLRAEREELAERY-------ATLSFDVQKLQRLHQAFSRFIGSHLAVAFEADPEAELRQLNRRRVELERALADHESQEQ 861
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 376 QLQVERDQYAENLKGESAM-----------WQQRVQQMAEQVHTLKEEKEHRERQ---VQELETSLAALRSqmeeppppe 441
Cdd:PRK04863 862 QQRSQLEQAKEGLSALNRLlprlnlladetLADRVEEIREQLDEAEEAKRFVQQHgnaLAQLEPIVSVLQS--------- 932
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 442 ppagPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQrwseqaEERKQILESMQSDRt 521
Cdd:PRK04863 933 ----DPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDLN------EKLRQRLEQAEQER- 1001
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 522 tisralsqnRELKEQLAELQNGFvrltNENMEITSALQSEQHVKKELarkLGELQERLGELkeTVELKSQEAQGLQEQRD 601
Cdd:PRK04863 1002 ---------TRAREQLRQAQAQL----AQYNQVLASLKSSYDAKRQM---LQELKQELQDL--GVPADSGAEERARARRD 1063
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 1676318910 602 QClshlqqyaaaYQQHLAAYEQltseKEAIHKQLLLQTQLMDQLQ 646
Cdd:PRK04863 1064 EL----------HARLSANRSR----RNQLEKQLTFCEAEMDNLT 1094
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
165-587 |
3.63e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.77 E-value: 3.63e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 165 SSTIEELKQQNQDTLDQLEKEKKDYQQKLAKEQGSLrEQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLAS 244
Cdd:PRK03918 188 TENIEELIKEKEKELEEVLREINEISSELPELREEL-EKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 245 RLQSSRQRVGELERTLSTVSTQQKQADRYNKdLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAaqlgVE 324
Cdd:PRK03918 267 RIEELKKEIEELEEKVKELKELKEKAEEYIK-LSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEER----LE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 325 ELQKKLEMSELLLQQFssqssaaggneqlqhamEERAQLETHVSQLMESLKQLQVERDQYA-ENLKGESAMWQQRVQQMA 403
Cdd:PRK03918 342 ELKKKLKELEKRLEEL-----------------EERHELYEEAKAKKEELERLKKRLTGLTpEKLEKELEELEKAKEEIE 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 404 EQVHTLKEEKEHRERQVQELETSLAALRSqmeePPPPEPPAGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSH 483
Cdd:PRK03918 405 EEISKITARIGELKKEIKELKKAIEELKK----AKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRK 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 484 LNREQEGRLLElEREAQRWSEQAEERKQILESMQS-DRTTISRALSQNRELKEQLAELQnGFVRLTNENMEITSALQSEq 562
Cdd:PRK03918 481 ELRELEKVLKK-ESELIKLKELAEQLKELEEKLKKyNLEELEKKAEEYEKLKEKLIKLK-GEIKSLKKELEKLEELKKK- 557
|
410 420
....*....|....*....|....*
gi 1676318910 563 hvKKELARKLGELQERLGELKETVE 587
Cdd:PRK03918 558 --LAELEKKLDELEEELAELLKELE 580
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
168-676 |
3.95e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 57.62 E-value: 3.95e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 168 IEELKQQnQDTLDQLEKEKKDYQQKLAK--EQGSLREQLQVHIQTIgilvsEKAELQTALAHTQQAARQKAGESEDLASR 245
Cdd:COG4913 244 LEDAREQ-IELLEPIRELAERYAAARERlaELEYLRAALRLWFAQR-----RLELLEAELEELRAELARLEAELERLEAR 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 246 LQSSRQRVGELERTLSTVSTQQKQadrynkDLTKERDALKLELyknsksnEDLRQQNSELEEKLRVLVAEKAAAQLGVEE 325
Cdd:COG4913 318 LDALREELDELEAQIRGNGGDRLE------QLEREIERLEREL-------EERERRRARLEALLAALGLPLPASAEEFAA 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 326 LQKKL---------EMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLqveRDQYAENL-------- 388
Cdd:COG4913 385 LRAEAaallealeeELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLAL---RDALAEALgldeaelp 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 389 --------KGESAMWQ---------------------QRVQ------QMAEQVHTLKEEKEHRERQVQEL-ETSLAAlrs 432
Cdd:COG4913 462 fvgelievRPEEERWRgaiervlggfaltllvppehyAAALrwvnrlHLRGRLVYERVRTGLPDPERPRLdPDSLAG--- 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 433 qmeeppppEPPAGPSEAEEQLQGE------------VEQLHKELERLT--GQL-----RAQVQDNESLSHL------NRE 487
Cdd:COG4913 539 --------KLDFKPHPFRAWLEAElgrrfdyvcvdsPEELRRHPRAITraGQVkgngtRHEKDDRRRIRSRyvlgfdNRA 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 488 Q----EGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQN------RELKEQLAELQNGFVRLTNENMEItsa 557
Cdd:COG4913 611 KlaalEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSwdeidvASAEREIAELEAELERLDASSDDL--- 687
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 558 lqseqhvkKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQhlaayeqlTSEKEAIHKQLLL 637
Cdd:COG4913 688 --------AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEA--------AEDLARLELRALL 751
|
570 580 590
....*....|....*....|....*....|....*....
gi 1676318910 638 QTQLmDQLQHEEVQGKMAAELaRQELQEAQERLKATSQE 676
Cdd:COG4913 752 EERF-AAALGDAVERELRENL-EERIDALRARLNRAEEE 788
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
251-591 |
1.10e-07 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 55.90 E-value: 1.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 251 QRVGELERTLSTVSTQQKQAD-RYNKDLTKERDALK--LELYKNSKSNEDlRQQNSELEEKLRVLVAEKAAAQLGVEELQ 327
Cdd:pfam17380 237 ERRKESFNLAEDVTTMTPEYTvRYNGQTMTENEFLNqlLHIVQHQKAVSE-RQQQEKFEKMEQERLRQEKEEKAREVERR 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 328 KKLEMSELLlQQFSSQSSAAGGNEQLQHAME-----ERAQLETHVSQlMESLKQ----LQVERDQYAENLKGESAMWQQR 398
Cdd:pfam17380 316 RKLEEAEKA-RQAEMDRQAAIYAEQERMAMErerelERIRQEERKRE-LERIRQeeiaMEISRMRELERLQMERQQKNER 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 399 VQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPppeppagpseaEEQLQGEVEQLHKELERLTGQLRAQVQDN 478
Cdd:pfam17380 394 VRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEAR-----------QREVRRLEEERAREMERVRLEEQERQQQV 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 479 ESLSHLNREQEGRLLELEREAQRWSEQAEERKQILE-SMQSDRTTISRALSQNRELKEQLAELQNGFV----RLTNENME 553
Cdd:pfam17380 463 ERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEkELEERKQAMIEEERKRKLLEKEMEERQKAIYeeerRREAEEER 542
|
330 340 350
....*....|....*....|....*....|....*...
gi 1676318910 554 ITSALQSEQHVKKELARKLGELQERLGELKETVELKSQ 591
Cdd:pfam17380 543 RKQQEMEERRRIQEQMRKATEERSRLEAMEREREMMRQ 580
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
448-815 |
1.49e-07 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 55.73 E-value: 1.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 448 EAEEQLQGEVEQLH----------KELERLTGQLRAQVQDNESLS-HLNREQEG---------RLLELEREAQRWSEQAE 507
Cdd:COG3096 289 ELRRELFGARRQLAeeqyrlvemaRELEELSARESDLEQDYQAASdHLNLVQTAlrqqekierYQEDLEELTERLEEQEE 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 508 ERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFvrltneNMEITSALQSEQHVK-KELARKLGELQERLGE-LKET 585
Cdd:COG3096 369 VVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQAL------DVQQTRAIQYQQAVQaLEKARALCGLPDLTPEnAEDY 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 586 VELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTS-----EKEAIHKQlllQTQLMDQLQHEEVQGKMAAELaR 660
Cdd:COG3096 443 LAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCKiagevERSQAWQT---ARELLRRYRSQQALAQRLQQL-R 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 661 QELQEAQERLKatSQENQQLQAQLSLLVLPGEGdvdqeeedeevpQSSLAIPEDLDSREAMVAFFNAAIARAEEEQARLR 740
Cdd:COG3096 519 AQLAELEQRLR--QQQNAERLLEEFCQRIGQQL------------DAAEELEELLAELEAQLEELEEQAAEAVEQRSELR 584
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 741 VQLKEQKARCRSLSHLAaPV----QSKLEK--EAVvprnvddSASEESNQALHVAMEKLQSRFLEVMQEKVELKERVEEL 814
Cdd:COG3096 585 QQLEQLRARIKELAARA-PAwlaaQDALERlrEQS-------GEALADSQEVTAAMQQLLEREREATVERDELAARKQAL 656
|
.
gi 1676318910 815 E 815
Cdd:COG3096 657 E 657
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
137-432 |
1.80e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.45 E-value: 1.80e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 137 SSNMKELENRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLDQLEKEKKDYqQKLAKEQGSLREQLQVHIQTIGILVS 216
Cdd:TIGR02168 753 SKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL-DELRAELTLLNEEAANLRERLESLER 831
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 217 EKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRynkdltkERDALKLELYKNSKSNE 296
Cdd:TIGR02168 832 RIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEE-------ALALLRSELEELSEELR 904
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 297 DLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMselLLQQFSSQssaagGNEQLQHAMEERAQLETHVSQLMESLKQ 376
Cdd:TIGR02168 905 ELESKRSELRRELEELREKLAQLELRLEGLEVRIDN---LQERLSEE-----YSLTLEEAEALENKIEDDEEEARRRLKR 976
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1676318910 377 LQVERDQYAE-NLkgeSAMwqqrvqqmaEQVHTLKEEKEHRERQVQELETSLAALRS 432
Cdd:TIGR02168 977 LENKIKELGPvNL---AAI---------EEYEELKERYDFLTAQKEDLTEAKETLEE 1021
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
110-587 |
2.52e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 54.66 E-value: 2.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 110 ESLRQLSQQLNGLVSESTSYINGEGLTSSNMK-------ELENRYQELAVALDSSYVTNKQLSSTIEELKQqNQDTLDQL 182
Cdd:PRK02224 279 EEVRDLRERLEELEEERDDLLAEAGLDDADAEavearreELEDRDEELRDRLEECRVAAQAHNEEAESLRE-DADDLEER 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 183 EKEKKDYQQKLAKEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLST 262
Cdd:PRK02224 358 AEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRT 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 263 VSTQQKQADRYnkdltkeRDALK-------LELYKNSKSNEDLRQQNSELEeklrvlvAEKAAAQLGVEELQKKLEMSEL 335
Cdd:PRK02224 438 ARERVEEAEAL-------LEAGKcpecgqpVEGSPHVETIEEDRERVEELE-------AELEDLEEEVEEVEERLERAED 503
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 336 LlqqfssqSSAAGGNEQLQHAMEERAQL-ETHVSQLMESLKQLQVERDQyAENLKGESAMWQQRVQQMAEQVHTLKEEKE 414
Cdd:PRK02224 504 L-------VEAEDRIERLEERREDLEELiAERRETIEEKRERAEELRER-AAELEAEAEEKREAAAEAEEEAEEAREEVA 575
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 415 HRERQVQELETSLAALrsqmeeppppeppagpsEAEEQLQGEVEQLHKELERLTGQLraqvqdnESLSHLNREQEGRLLE 494
Cdd:PRK02224 576 ELNSKLAELKERIESL-----------------ERIRTLLAAIADAEDEIERLREKR-------EALAELNDERRERLAE 631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 495 L-EREAQRWSEQAEERkqiLESMQSDRTTISRALSQN----RELKEQLAELQNgfvrltnenmEITSalqseqhVKKELA 569
Cdd:PRK02224 632 KrERKRELEAEFDEAR---IEEAREDKERAEEYLEQVeeklDELREERDDLQA----------EIGA-------VENELE 691
|
490
....*....|....*...
gi 1676318910 570 RkLGELQERLGELKETVE 587
Cdd:PRK02224 692 E-LEELRERREALENRVE 708
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
253-675 |
2.60e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.77 E-value: 2.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 253 VGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEM 332
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 333 SELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEE 412
Cdd:COG4717 128 LPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQR 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 413 KEHRERQVQELETSLAALRSQMEEPPPPEPPAGPSEAEEQ-------------LQGEVEQLHKELERLTGQLRA------ 473
Cdd:COG4717 208 LAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEarlllliaaallaLLGLGGSLLSLILTIAGVLFLvlglla 287
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 474 ---QVQDNESLSHLNREQEGRLLELER--EAQRWSEQAEER-----------KQILESMQSDRTTISRALSQNRELK--E 535
Cdd:COG4717 288 llfLLLAREKASLGKEAEELQALPALEelEEEELEELLAALglppdlspeelLELLDRIEELQELLREAEELEEELQleE 367
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 536 QLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVE--LKSQEAQGLQEQRDQCLSHLQQYAAA 613
Cdd:COG4717 368 LEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEelLEALDEEELEEELEELEEELEELEEE 447
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1676318910 614 YQQHLAAYEQLTSEKEAIHK-----QLLLQTQLMDQLQHEEVQGKMAAELARQELQEAQERLKATSQ 675
Cdd:COG4717 448 LEELREELAELEAELEQLEEdgelaELLQELEELKAELRELAEEWAALKLALELLEEAREEYREERL 514
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
167-883 |
3.95e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.30 E-value: 3.95e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 167 TIEELKQQNQDTLDQLEKEKKDYQ---QKLAKEQGSLREQLQVHIQTIGILVS-EKAELQTALAHTQQAARQKAGESEDL 242
Cdd:TIGR02169 234 ALERQKEAIERQLASLEEELEKLTeeiSELEKRLEEIEQLLEELNKKIKDLGEeEQLRVKEKIGELEAEIASLERSIAEK 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 243 ASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLG 322
Cdd:TIGR02169 314 ERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREK 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 323 VEELQKKLEmselllqqfSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGEsamwQQRVQQM 402
Cdd:TIGR02169 394 LEKLKREIN---------ELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQ----EWKLEQL 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 403 AEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGPSE-----AEEQLQ-------GEVEQLHKELER---- 466
Cdd:TIGR02169 461 AADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVrggraVEEVLKasiqgvhGTVAQLGSVGERyata 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 467 ----LTGQLRAQVQDNES-----LSHLNREQEGR------------------------------LLELEREAQRWSEQAE 507
Cdd:TIGR02169 541 ievaAGNRLNNVVVEDDAvakeaIELLKRRKAGRatflplnkmrderrdlsilsedgvigfavdLVEFDPKYEPAFKYVF 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 508 ERKQILESMQSDR--TTISRALSQNRELKEQLAELQNGFVrltnenmeitsALQSEQHVKKELARKLGELQERLGELKET 585
Cdd:TIGR02169 621 GDTLVVEDIEAARrlMGKYRMVTLEGELFEKSGAMTGGSR-----------APRGGILFSRSEPAELQRLRERLEGLKRE 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 586 VELKSQEAQGLQEQRDQCLSHLQqyaAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQH--------EEVQGKMAAE 657
Cdd:TIGR02169 690 LSSLQSELRRIENRLDELSQELS---DASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSleqeienvKSELKELEAR 766
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 658 LARQELQEAQERLKATSQENQQLQAQLSLLVLPGEGDVDQEEEDEEVPQSslaIPEDLDSREAMVAFFNAAIARAEEEQA 737
Cdd:TIGR02169 767 IEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLRE---IEQKLNRLTLEKEYLEKEIQELQEQRI 843
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 738 RLRVQLKEQKARCRSLSHLAAPVQSKLEKEAVVPRNVDDSASEESNQALHV--AMEKLQSRFLEVMQEKVELKERVEELE 815
Cdd:TIGR02169 844 DLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELeaQLRELERKIEELEAQIEKKRKRLSELK 923
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 816 HCCIQLSGETDTIGEYIALYQNQRA------VLKARHLEKEEYISRLA-------QDKEEMKVKLLELQELVLRLVNERN 882
Cdd:TIGR02169 924 AKLEALEEELSEIEDPKGEDEEIPEeelsleDVQAELQRVEEEIRALEpvnmlaiQEYEEVLKRLDELKEKRAKLEEERK 1003
|
.
gi 1676318910 883 E 883
Cdd:TIGR02169 1004 A 1004
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
275-676 |
6.01e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 53.62 E-value: 6.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 275 KDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLQ 354
Cdd:COG4717 49 ERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLL 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 355 HAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQM 434
Cdd:COG4717 129 PLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRL 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 435 EEPPppeppagpsEAEEQLQGEVEQLHKELERLTGQLRAQvQDNESLSHLNREQ--EGRLLELEREAQRWSEQAEERKQI 512
Cdd:COG4717 209 AELE---------EELEEAQEELEELEEELEQLENELEAA-ALEERLKEARLLLliAAALLALLGLGGSLLSLILTIAGV 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 513 LESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKEL-----------ARKLGELQERLGE 581
Cdd:COG4717 279 LFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLspeellelldrIEELQELLREAEE 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 582 LKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHlAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAELA-- 659
Cdd:COG4717 359 LEEELQLEELEQEIAALLAEAGVEDEEELRAALEQA-EEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEel 437
|
410
....*....|....*..
gi 1676318910 660 RQELQEAQERLKATSQE 676
Cdd:COG4717 438 EEELEELEEELEELREE 454
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
183-677 |
9.74e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.22 E-value: 9.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 183 EKEKKDYQQKLAKEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTlst 262
Cdd:PTZ00121 1234 EAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKK--- 1310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 263 vSTQQKQADRYNK---DLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQ 339
Cdd:PTZ00121 1311 -AEEAKKADEAKKkaeEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEE 1389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 340 FSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQ 419
Cdd:PTZ00121 1390 KKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEA 1469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 420 VQELETSLAALRSQMEEPPPPEPPAGPSEAEEQLQGE-----VEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLE 494
Cdd:PTZ00121 1470 KKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAeakkkADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAD 1549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 495 LEREAQRwSEQAEERKQILESM--QSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKL 572
Cdd:PTZ00121 1550 ELKKAEE-LKKAEEKKKAEEAKkaEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKA 1628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 573 GELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQlllqtqlMDQLQHEEVQG 652
Cdd:PTZ00121 1629 EEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKA-------AEALKKEAEEA 1701
|
490 500
....*....|....*....|....*..
gi 1676318910 653 KMAAELARQELQEAQ--ERLKATSQEN 677
Cdd:PTZ00121 1702 KKAEELKKKEAEEKKkaEELKKAEEEN 1728
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
168-677 |
1.03e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 52.73 E-value: 1.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 168 IEELKQQNQDTLDQLEKekkdyqQKLAKEQGSLREQLQVhiqtigiLVSEKAELQTALAHTQQAARQKAGESEDLASRLQ 247
Cdd:PRK02224 178 VERVLSDQRGSLDQLKA------QIEEKEEKDLHERLNG-------LESELAELDEEIERYEEQREQARETRDEADEVLE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 248 SSRQRVGELERTLSTV--STQQKQADRynkdltKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEE 325
Cdd:PRK02224 245 EHEERREELETLEAEIedLRETIAETE------REREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 326 LQKKLEmselllqqfssqssaaggnEQLQHAMEERAQLETHVSQlmeslkqlqverdqyAENLKGESAMWQQRVQQMAEQ 405
Cdd:PRK02224 319 LEDRDE-------------------ELRDRLEECRVAAQAHNEE---------------AESLREDADDLEERAEELREE 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 406 VHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGpsEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLShlN 485
Cdd:PRK02224 365 AAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAP--VDLGNAEDFLEELREERDELREREAELEATLRTAR--E 440
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 486 REQEGRLLeleREAQRWSE--QAEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLtnenmeiTSALQSEQH 563
Cdd:PRK02224 441 RVEEAEAL---LEAGKCPEcgQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERA-------EDLVEAEDR 510
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 564 VKKeLARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQ-QYAAAYQQHLAAYEQLtSEKEAIHKQLLLQTQLM 642
Cdd:PRK02224 511 IER-LEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEeKREAAAEAEEEAEEAR-EEVAELNSKLAELKERI 588
|
490 500 510
....*....|....*....|....*....|....*
gi 1676318910 643 DQLQHEEVQGKMAAElARQELQEAQERLKATSQEN 677
Cdd:PRK02224 589 ESLERIRTLLAAIAD-AEDEIERLREKREALAELN 622
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
141-671 |
1.16e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.61 E-value: 1.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 141 KELENRYQELAVALDSsyvTNKQLSSTIEELKQQNQDTLDQLEKEKKDYQQKLAkEQGSLREQLQVHIQTIGI-LVSEKA 219
Cdd:COG4913 305 ARLEAELERLEARLDA---LREELDELEAQIRGNGGDRLEQLEREIERLERELE-ERERRRARLEALLAALGLpLPASAE 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 220 ELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQ----QKQADRYNKDLTKERDALKLELyknSKSN 295
Cdd:COG4913 381 EFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEiaslERRKSNIPARLLALRDALAEAL---GLDE 457
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 296 EDLR------QQNSELEE------------KLRVLVAEKAAAQ----------------LGVEELQKKLEMSEL----LL 337
Cdd:COG4913 458 AELPfvgeliEVRPEEERwrgaiervlggfALTLLVPPEHYAAalrwvnrlhlrgrlvyERVRTGLPDPERPRLdpdsLA 537
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 338 QQFSSQSSAAGG--NEQLQHAM-----EERAQLETHVSQLME--------SLKQLQVERDQYAENLKGESAmwQQRVQQM 402
Cdd:COG4913 538 GKLDFKPHPFRAwlEAELGRRFdyvcvDSPEELRRHPRAITRagqvkgngTRHEKDDRRRIRSRYVLGFDN--RAKLAAL 615
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 403 AEQVHTLKEEKEHRERQVQELETSLAALRSQmeePPPPEPPAGPSEAEEqlqgEVEQLHKELERLTGQLRAQVQDNESLS 482
Cdd:COG4913 616 EAELAELEEELAEAEERLEALEAELDALQER---REALQRLAEYSWDEI----DVASAEREIAELEAELERLDASSDDLA 688
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 483 HLNREQEgrllELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENM-EITSALQSE 561
Cdd:COG4913 689 ALEEQLE----ELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERfAAALGDAVE 764
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 562 QHVKKELARKLGELQERLGELKETVELKSQEAqglQEQRDQCLSHLQQYAAAYQQHLAAYEQLTS----EKEAIHKQLLL 637
Cdd:COG4913 765 RELRENLEERIDALRARLNRAEEELERAMRAF---NREWPAETADLDADLESLPEYLALLDRLEEdglpEYEERFKELLN 841
|
570 580 590
....*....|....*....|....*....|....*.
gi 1676318910 638 Q--TQLMDQLQHEevqgkmaaelARQELQEAQERLK 671
Cdd:COG4913 842 EnsIEFVADLLSK----------LRRAIREIKERID 867
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
275-540 |
1.75e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.22 E-value: 1.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 275 KDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVL--VAEKAAAQLGVEELQKKL-----EMSELL-----LQQFSS 342
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALEAELDALQERREALqrLAEYSWDEIDVASAEREIaeleaELERLDassddLAALEE 692
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 343 QSSAAggNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQE 422
Cdd:COG4913 693 QLEEL--EAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELREN 770
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 423 LETSLAALRSQMeeppppeppagpSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNES-LSHLNREQEGRLLELEreaQR 501
Cdd:COG4913 771 LEERIDALRARL------------NRAEEELERAMRAFNREWPAETADLDADLESLPEyLALLDRLEEDGLPEYE---ER 835
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1676318910 502 WseqaeeRKQILESMQSDRTTISRALSQNREL-KEQLAEL 540
Cdd:COG4913 836 F------KELLNENSIEFVADLLSKLRRAIREiKERIDPL 869
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
163-839 |
2.17e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.99 E-value: 2.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 163 QLSSTIEELKQQnQDTLDQLEKEKKDYQQKLAKEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDL 242
Cdd:TIGR02169 291 RVKEKIGELEAE-IASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDL 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 243 ASRLQssrqrvgELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLG 322
Cdd:TIGR02169 370 RAELE-------EVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEE 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 323 VEELQKKLEMSELLLQQFSSQSSAAggNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMwQQRVQQM 402
Cdd:TIGR02169 443 KEDKALEIKKQEWKLEQLAADLSKY--EQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAV-EEVLKAS 519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 403 AEQVH-TLKEEKEHRERQVQELETSLAA-------------------LRS---------------QMEEPPPPEPPAGPS 447
Cdd:TIGR02169 520 IQGVHgTVAQLGSVGERYATAIEVAAGNrlnnvvveddavakeaielLKRrkagratflplnkmrDERRDLSILSEDGVI 599
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 448 -------EAEEQLQGEVEQ------LHKELE---RLTGQLRAQVQDNESL---------SHLNREQEGRLLELEREAQRW 502
Cdd:TIGR02169 600 gfavdlvEFDPKYEPAFKYvfgdtlVVEDIEaarRLMGKYRMVTLEGELFeksgamtggSRAPRGGILFSRSEPAELQRL 679
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 503 SEQAEERKQILESMQSDRTTISRALSqnrELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGEL 582
Cdd:TIGR02169 680 RERLEGLKRELSSLQSELRRIENRLD---ELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENV 756
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 583 KETVELKSQEAQGLQEQrdqcLSHLQQYAAAYQQHLAAY-----EQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAE 657
Cdd:TIGR02169 757 KSELKELEARIEELEED----LHKLEEALNDLEARLSHSripeiQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLE 832
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 658 LARQELQEAQERLKATSQENQQLQAQLSLLVLPGEGDVDQEEEDEEVPQSSLA-IPEDLDSREAMVAFFNAAIARAEEEQ 736
Cdd:TIGR02169 833 KEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGdLKKERDELEAQLRELERKIEELEAQI 912
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 737 ARLRVQLKEQKARCRSL-SHLAAPVQSKLEKEAVVPRNVDDSASEESNQALHVAMEKLQSRFLEVMQEKVELKERVEELE 815
Cdd:TIGR02169 913 EKKRKRLSELKAKLEALeEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELK 992
|
730 740
....*....|....*....|....
gi 1676318910 816 HCCIQLSGETDTIGEYIALYQNQR 839
Cdd:TIGR02169 993 EKRAKLEEERKAILERIEEYEKKK 1016
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
140-503 |
4.05e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.92 E-value: 4.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 140 MKELENRYQELAVALDSSYVTNKQLSSTIEELKQQNQdtldQLEKEKKDYQQKLAKEQGSLREQLQVHIQTIGILVSEKA 219
Cdd:COG4717 134 LEALEAELAELPERLEELEERLEELRELEEELEELEA----ELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLA 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 220 ELQTALAHTQQAARQKAGESEDLASRLQSS--RQRVGELERTL---STVSTQQKQADRYNKDLTKERDALKLEL------ 288
Cdd:COG4717 210 ELEEELEEAQEELEELEEELEQLENELEAAalEERLKEARLLLliaAALLALLGLGGSLLSLILTIAGVLFLVLgllall 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 289 -YKNSKSNEDLRQQnselEEKLRVLVAEKAAAQLGVEELQKKLEMSELLlqqfsSQSSAAGGNEQLQHAMEERAQLETHV 367
Cdd:COG4717 290 fLLLAREKASLGKE----AEELQALPALEELEEEELEELLAALGLPPDL-----SPEELLELLDRIEELQELLREAEELE 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 368 SQLmeSLKQLQVERDQYAENLKGES-AMWQQRVQQmAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGP 446
Cdd:COG4717 361 EEL--QLEELEQEIAALLAEAGVEDeEELRAALEQ-AEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEEL 437
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 1676318910 447 SEAEEQLQGEVEQLHKELERLTGQLRaQVQDNESLSHLNREQEGRLLELEREAQRWS 503
Cdd:COG4717 438 EEELEELEEELEELREELAELEAELE-QLEEDGELAELLQELEELKAELRELAEEWA 493
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
218-679 |
4.13e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 51.07 E-value: 4.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 218 KAELQTALahtQQAARQKAGESEDLASrlqssrqrVGELERTLSTVstqqKQADRYNKDLtkerDALKLELyknSKSNED 297
Cdd:PRK11281 38 EADVQAQL---DALNKQKLLEAEDKLV--------QQDLEQTLALL----DKIDRQKEET----EQLKQQL---AQAPAK 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 298 LRQQNSELE--EKLRVLVAEKAAAQLGVEELQKKLEmsELLLQQFSSQSSAAGGNEQL--QHAMEERAQlethvSQLMES 373
Cdd:PRK11281 96 LRQAQAELEalKDDNDEETRETLSTLSLRQLESRLA--QTLDQLQNAQNDLAEYNSQLvsLQTQPERAQ-----AALYAN 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 374 lkqlqverdqyaenlkgesamwQQRVQQMAEQVHTLKEEKEH-RERQVQELETSLAALRSQMEEPPPPEppagpsEAEEQ 452
Cdd:PRK11281 169 ----------------------SQRLQQIRNLLKGGKVGGKAlRPSQRVLLQAEQALLNAQNDLQRKSL------EGNTQ 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 453 LQGEVEQLHKELERLTGQLRAQVQDNESLshLNREqegRLLELEREAQrwseQAEERKQILESMQSDrtTISRALSQNRE 532
Cdd:PRK11281 221 LQDLLQKQRDYLTARIQRLEHQLQLLQEA--INSK---RLTLSEKTVQ----EAQSQDEAARIQANP--LVAQELEINLQ 289
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 533 LKEQLAELQNGFVRLTNENMEIT----SALQSEQHVKKE---------LARKLGELQERLGELKETVELKSQEAQ----- 594
Cdd:PRK11281 290 LSQRLLKATEKLNTLTQQNLRVKnwldRLTQSERNIKEQisvlkgsllLSRILYQQQQALPSADLIEGLADRIADlrleq 369
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 595 -GLQEQRDQcLSHLQQYAAAyqqhlaayeqltsekeaihkqlLLQTQlmdqlqheevQGKMAAELARQELQEAQERLKAT 673
Cdd:PRK11281 370 fEINQQRDA-LFQPDAYIDK----------------------LEAGH----------KSEVTDEVRDALLQLLDERRELL 416
|
....*.
gi 1676318910 674 SQENQQ 679
Cdd:PRK11281 417 DQLNKQ 422
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
169-522 |
4.42e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.91 E-value: 4.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 169 EELKQQNQDTLDQLEKEKKDYQQKLAKEQGSLREQlqvhiqtigilvSEKAELQTALAHTQQAARQKAGESEDLASRLQS 248
Cdd:PTZ00121 1434 DEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEE------------AKKADEAKKKAEEAKKADEAKKKAEEAKKKADE 1501
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 249 SRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLR--QQNSELEEKLRVLVAEKA----AAQLG 322
Cdd:PTZ00121 1502 AKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKkaEELKKAEEKKKAEEAKKAeedkNMALR 1581
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 323 VEELQKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLET-----HVSQLMESLKQLQVERDQYAENLKGESAMWQQ 397
Cdd:PTZ00121 1582 KAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEElkkaeEEKKKVEQLKKKEAEEKKKAEELKKAEEENKI 1661
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 398 RVQQM----------AEQVHTLKEEKEHRERQV-QELETSLAALRSQMEEPPPPEPPAGPSEAEEQLQGEVEQLHKELE- 465
Cdd:PTZ00121 1662 KAAEEakkaeedkkkAEEAKKAEEDEKKAAEALkKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEe 1741
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 1676318910 466 --RLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTT 522
Cdd:PTZ00121 1742 dkKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKI 1800
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
242-466 |
5.45e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.76 E-value: 5.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 242 LASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQL 321
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 322 GVEELQKKLE-----MSELL--LQQFSSQSS-----AAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLK 389
Cdd:COG4942 91 EIAELRAELEaqkeeLAELLraLYRLGRQPPlalllSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1676318910 390 GESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPppeppagpsEAEEQLQGEVEQLHKELER 466
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQ---------QEAEELEALIARLEAEAAA 238
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
112-540 |
5.94e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.15 E-value: 5.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 112 LRQLSQQLNGLVSESTSY---INGEGLTSSNMKELENRYQELAVALDS-----SYVTNKQLSSTIEELKQQNQDTLDQLE 183
Cdd:COG4717 73 LKELEEELKEAEEKEEEYaelQEELEELEEELEELEAELEELREELEKlekllQLLPLYQELEALEAELAELPERLEELE 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 184 KEKKDYQQKLAKEQgSLREQLQvhiqtigilvSEKAELQTALAHTQQAARQkagESEDLASRLQSSRQRVGELERTLSTV 263
Cdd:COG4717 153 ERLEELRELEEELE-ELEAELA----------ELQEELEELLEQLSLATEE---ELQDLAEELEELQQRLAELEEELEEA 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 264 STQQKQADRynkdltkerdalKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELL------- 336
Cdd:COG4717 219 QEELEELEE------------ELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLflvlgll 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 337 -LQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEqvhtlkEEKEH 415
Cdd:COG4717 287 aLLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLRE------AEELE 360
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 416 RERQVQELETSLAAL--RSQMEEPPPPEPPAGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQ--DNESLSHLNREQEGR 491
Cdd:COG4717 361 EELQLEELEQEIAALlaEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEalDEEELEEELEELEEE 440
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 1676318910 492 LLELEREAQRWSEQAEERKQILESMQSDRtTISRALSQNRELKEQLAEL 540
Cdd:COG4717 441 LEELEEELEELREELAELEAELEQLEEDG-ELAELLQELEELKAELREL 488
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
201-591 |
5.97e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 50.34 E-value: 5.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 201 REQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVST---QQKQADRYNKDL 277
Cdd:PRK04863 278 ANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTalrQQEKIERYQADL 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 278 tkerDALKLELYKNSKSNEDLRQQNSELEEKLRvlvaekaAAQLGVEELQKKLEMSElllQQFSSQSSAAGGNEQLQHAM 357
Cdd:PRK04863 358 ----EELEERLEEQNEVVEEADEQQEENEARAE-------AAEEEVDELKSQLADYQ---QALDVQQTRAIQYQQAVQAL 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 358 EERAQL----ETHVSQLMESLKQLQVERDQYAENLKG------ESAMWQQRVQQMAEQVHTLKEEKEHRE--RQVQELET 425
Cdd:PRK04863 424 ERAKQLcglpDLTADNAEDWLEEFQAKEQEATEELLSleqklsVAQAAHSQFEQAYQLVRKIAGEVSRSEawDVARELLR 503
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 426 SLAALRSQMEEPPPPEPPAGPSEAEEQLQGEVEQLhkeLERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQ 505
Cdd:PRK04863 504 RLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERL---LAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARER 580
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 506 AEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKET 585
Cdd:PRK04863 581 RMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDEE 660
|
....*.
gi 1676318910 586 VELKSQ 591
Cdd:PRK04863 661 IERLSQ 666
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
304-575 |
5.98e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 50.34 E-value: 5.98e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 304 ELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQ 383
Cdd:COG3096 789 ELRAERDELAEQYAKASFDVQKLQRLHQAFSQFVGGHLAVAFAPDPEAELAALRQRRSELERELAQHRAQEQQLRQQLDQ 868
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 384 YAENLKGESAM-----------WQQRVQQMAEQVHTLKEEKEHRERQ---VQELETSLAALRSqmeeppppeppagPSEA 449
Cdd:COG3096 869 LKEQLQLLNKLlpqanlladetLADRLEELREELDAAQEAQAFIQQHgkaLAQLEPLVAVLQS-------------DPEQ 935
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 450 EEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLElerEAQRWSEQAEERkqiLESMQSDRttisralsq 529
Cdd:COG3096 936 FEQLQADYLQAKEQQRRLKQQIFALSEVVQRRPHFSYEDAVGLLG---ENSDLNEKLRAR---LEQAEEAR--------- 1000
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 1676318910 530 nRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGEL 575
Cdd:COG3096 1001 -REAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQELEEL 1045
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
447-674 |
8.66e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 8.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 447 SEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRA 526
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 527 LSQNRE-LKEQLAELQ-NGFVRLTNENMEITSALQSE------QHVKKELARKLGELQERLGELKETVELKSQEAQGLQE 598
Cdd:COG4942 99 LEAQKEeLAELLRALYrLGRQPPLALLLSPEDFLDAVrrlqylKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1676318910 599 QRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLllqtqlmDQLQHEEVQGKMAAELARQELQEAQERLKATS 674
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAEL-------AELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
217-670 |
1.52e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 49.18 E-value: 1.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 217 EKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTvsTQQKQADRYNKDLTKERDALKLELYKnsksnE 296
Cdd:COG3096 282 ELSERALELRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQ--DYQAASDHLNLVQTALRQQEKIERYQ-----E 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 297 DLrqqnSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELllqqfsSQSSAAGGNEQLQHAMEE---RAQLETHVSQLMES 373
Cdd:COG3096 355 DL----EELTERLEEQEEVVEEAAEQLAEAEARLEAAEE------EVDSLKSQLADYQQALDVqqtRAIQYQQAVQALEK 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 374 LKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSqmeeppppepPAGPSEAEEQL 453
Cdd:COG3096 425 ARALCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCK----------IAGEVERSQAW 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 454 QGEVEQLhkeleRLTGQLRAQVQDNESLshlnreqEGRLLELEREaqrwseqaeerkqilesmqsdrttisraLSQNREL 533
Cdd:COG3096 495 QTARELL-----RRYRSQQALAQRLQQL-------RAQLAELEQR----------------------------LRQQQNA 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 534 KEQLAELQNGFvrltneNMEITSALqseqhvkkELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAA 613
Cdd:COG3096 535 ERLLEEFCQRI------GQQLDAAE--------ELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAAR 600
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 1676318910 614 YQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQHeEVQGKMAAELARQELQEAQERL 670
Cdd:COG3096 601 APAWLAAQDALERLREQSGEALADSQEVTAAMQQ-LLEREREATVERDELAARKQAL 656
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
219-466 |
1.73e-05 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 48.48 E-value: 1.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 219 AELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGElertlSTVSTQQKQADRYNK-DLTKERDALKLELYKNSKSNED 297
Cdd:pfam05667 254 EQLRSAALAGTEATSGASRSAQDLAELLSSFSGSSTT-----DTGLTKGSRFTHTEKlQFTNEAPAATSSPPTKVETEEE 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 298 LRQQN----SELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQssaaggNEQLQHAMEERAQLETHVSQLMES 373
Cdd:pfam05667 329 LQQQReeelEELQEQLEDLESSIQELEKEIKKLESSIKQVEEELEELKEQ------NEELEKQYKVKKKTLDLLPDAEEN 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 374 LKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGpsEAEEQL 453
Cdd:pfam05667 403 IAKLQALVDASAQRLVELAGQWEKHRVPLIEEYRALKEAKSNKEDESQRKLEEIKELREKIKEVAEEAKQKE--ELYKQL 480
|
250
....*....|...
gi 1676318910 454 QGEVEQLHKELER 466
Cdd:pfam05667 481 VAEYERLPKDVSR 493
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
96-662 |
1.75e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 48.81 E-value: 1.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 96 CSNLMEETKTFSSTESLRQLSQQLNGLVSESTSYINGEGLTSSNMKELENRYQELAVALDSSYVTNKQLSSTIEELKQQN 175
Cdd:TIGR00618 269 IEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQ 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 176 QDTLDQLEKEKKDYQQKLAKEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGE 255
Cdd:TIGR00618 349 TLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAH 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 256 LERTLS---TVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEM 332
Cdd:TIGR00618 429 AKKQQElqqRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCG 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 333 SELLLQQFSSQSSAAGGNEQLQHAMEERAQ-----LETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVH 407
Cdd:TIGR00618 509 SCIHPNPARQDIDNPGPLTRRMQRGEQTYAqletsEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPN 588
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 408 TLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNRE 487
Cdd:TIGR00618 589 LQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIR 668
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 488 QEGRLLELEREAQRWSEQAEerkqiLESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKE 567
Cdd:TIGR00618 669 VLPKELLASRQLALQKMQSE-----KEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQ 743
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 568 LARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQH 647
Cdd:TIGR00618 744 SLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQC 823
|
570
....*....|....*
gi 1676318910 648 EEVQGKMAAELARQE 662
Cdd:TIGR00618 824 ETLVQEEEQFLSRLE 838
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
182-643 |
1.79e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.61 E-value: 1.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 182 LEKEKKDYQQKLAKEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLS 261
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 262 tvstqqkqadryNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEklrvLVAEKAAAQLGVEELQKKLEMsELLLQQFS 341
Cdd:COG4717 127 ------------LLPLYQELEALEAELAELPERLEELEERLEELRE----LEEELEELEAELAELQEELEE-LLEQLSLA 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 342 SQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAmwQQRVQQMAEQ---------VHTLKEE 412
Cdd:COG4717 190 TEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAAL--EERLKEARLLlliaaallaLLGLGGS 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 413 KEHRERQVQELETSLAALRSQMEEPPPPEPPAGPSEAEEQLQGEV------EQLHKELERLTGQLRAQVQDNESLSHLNR 486
Cdd:COG4717 268 LLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPAleeleeEELEELLAALGLPPDLSPEELLELLDRIE 347
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 487 EQEGRLLELEREAQR--WSEQAEERKQILESMQ-SDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALqsEQH 563
Cdd:COG4717 348 ELQELLREAEELEEElqLEELEQEIAALLAEAGvEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELL--EAL 425
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 564 VKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQcLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMD 643
Cdd:COG4717 426 DEEELEEELEELEEELEELEEELEELREELAELEAELEQ-LEEDGELAELLQELEELKAELRELAEEWAALKLALELLEE 504
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
168-641 |
1.89e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 48.81 E-value: 1.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 168 IEELKQQNQDTLDQLEKEKKDYQQKLAKEQgsLREQLQVHIQTIGILVSEKAELQTALAHTQQAAR---------QKAGE 238
Cdd:TIGR00618 231 LREALQQTQQSHAYLTQKREAQEEQLKKQQ--LLKQLRARIEELRAQEAVLEETQERINRARKAAPlaahikavtQIEQQ 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 239 SEDLASRLQSS-RQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKN-SKSNEDLRQQNSELEEKLRVLVAEK 316
Cdd:TIGR00618 309 AQRIHTELQSKmRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEvATSIREISCQQHTLTQHIHTLQQQK 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 317 AAAQLGVEELQKKLEMSELLLQQFSSQSSA--------AGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENL 388
Cdd:TIGR00618 389 TTLTQKLQSLCKELDILQREQATIDTRTSAfrdlqgqlAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSL 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 389 KGESAMWQQrVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGPSEAE-EQLQGEVEQLHKELERL 467
Cdd:TIGR00618 469 KEREQQLQT-KEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRmQRGEQTYAQLETSEEDV 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 468 TGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQsdrttisRALSQNRELKEQLAELQNGFVRL 547
Cdd:TIGR00618 548 YHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQ-------DLTEKLSEAEDMLACEQHALLRK 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 548 TNENMEITSALQSEQHVKKELARKLGELQERLGELketveLKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSE 627
Cdd:TIGR00618 621 LQPEQDLQDVRLHLQQCSQELALKLTALHALQLTL-----TQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYW 695
|
490
....*....|....*
gi 1676318910 628 KEAI-HKQLLLQTQL 641
Cdd:TIGR00618 696 KEMLaQCQTLLRELE 710
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
162-602 |
1.90e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 48.56 E-value: 1.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 162 KQLSSTIEELKQQNQDTLDQLEKEKKDYQQKLAKEQGSLREQL------QVHIQTIGILVSEKAELQTALAHTQQAARQK 235
Cdd:pfam05483 355 EATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTkfknnkEVELEELKKILAEDEKLLDEKKQFEKIAEEL 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 236 AGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAE 315
Cdd:pfam05483 435 KGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLE 514
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 316 KAAAQlgvEELQKKLEMSELLLQQFSSQSsaaggneqlQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMW 395
Cdd:pfam05483 515 LKKHQ---EDIINCKKQEERMLKQIENLE---------EKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEV 582
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 396 QQRVQQMA---EQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAgpSEAEEQLQGEVEQLHKELERLTGQLR 472
Cdd:pfam05483 583 LKKEKQMKileNKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAY--EIKVNKLELELASAKQKFEEIIDNYQ 660
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 473 AQVQDNESlshlnrEQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNenm 552
Cdd:pfam05483 661 KEIEDKKI------SEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYK--- 731
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 1676318910 553 eitSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQ 602
Cdd:pfam05483 732 ---NKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAKE 778
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
238-433 |
2.16e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.76 E-value: 2.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 238 ESEDLASRLQSSRQRVGELERTLSTVSTQQKQ-------ADRYNKDLTK----ERDALKLELYKNSKSNEDLRQQNSELE 306
Cdd:COG4913 222 DTFEAADALVEHFDDLERAHEALEDAREQIELlepirelAERYAAARERlaelEYLRAALRLWFAQRRLELLEAELEELR 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 307 EKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQfssqssaAGGN------EQLQHAMEERAQLETHVSQLMESLKQLQVE 380
Cdd:COG4913 302 AELARLEAELERLEARLDALREELDELEAQIRG-------NGGDrleqleREIERLERELEERERRRARLEALLAALGLP 374
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1676318910 381 rdqyaenLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQ 433
Cdd:COG4913 375 -------LPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRE 420
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
160-762 |
2.62e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 48.41 E-value: 2.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 160 TNKQLSSTIEELKQQNQ---DTLDQLEkekkdyqQKLAKEQGSLREQLQVH--IQTIGILVSEKAELQTALAHTQQAARQ 234
Cdd:PRK04863 436 TADNAEDWLEEFQAKEQeatEELLSLE-------QKLSVAQAAHSQFEQAYqlVRKIAGEVSRSEAWDVARELLRRLREQ 508
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 235 KAgesedLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDAlklelyknsksNEDLRQQNSELEEKLRVLVA 314
Cdd:PRK04863 509 RH-----LAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDD-----------EDELEQLQEELEARLESLSE 572
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 315 EKAAAQLGVEELQKKLEMSELLLQQFSS--------QSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAE 386
Cdd:PRK04863 573 SVSEARERRMALRQQLEQLQARIQRLAArapawlaaQDALARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAA 652
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 387 N---LKGESAMWQQ-------RVQQMAEQVHTLKEEKEHRERQVQE---LETSLAALRSQMEEPPppeppagPSEAEEQL 453
Cdd:PRK04863 653 RkqaLDEEIERLSQpggsedpRLNALAERFGGVLLSEIYDDVSLEDapyFSALYGPARHAIVVPD-------LSDAAEQL 725
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 454 QGEvEQLHKELERLTGQLR--------AQVQDNESLSHLNREQ-----------------EGRLLELEREAQRWSEQAEE 508
Cdd:PRK04863 726 AGL-EDCPEDLYLIEGDPDsfddsvfsVEELEKAVVVKIADRQwrysrfpevplfgraarEKRIEQLRAEREELAERYAT 804
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 509 RKQILESMQSDRTTISRALSQN-------------RELKEQLAELQNGFVRLTNENMEITSALQSeqhvKKELARKLGEL 575
Cdd:PRK04863 805 LSFDVQKLQRLHQAFSRFIGSHlavafeadpeaelRQLNRRRVELERALADHESQEQQQRSQLEQ----AKEGLSALNRL 880
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 576 QERLGELKEtvELKSQEAQGLQEQRDQClshlqQYAAAY-QQHLAAYEQLtsEKEAIhkqlLLQTqlmDQLQHEEVQGkm 654
Cdd:PRK04863 881 LPRLNLLAD--ETLADRVEEIREQLDEA-----EEAKRFvQQHGNALAQL--EPIVS----VLQS---DPEQFEQLKQ-- 942
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 655 AAELARQELQEAQERLKATSQENQQLQAQLSLLVlpgegdvdqeeedeevpqsslaiPEDLDSREAMVAFFNAAIARAEE 734
Cdd:PRK04863 943 DYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDA-----------------------AEMLAKNSDLNEKLRQRLEQAEQ 999
|
650 660
....*....|....*....|....*...
gi 1676318910 735 EQARLRVQLKEQKARCRSLSHLAAPVQS 762
Cdd:PRK04863 1000 ERTRAREQLRQAQAQLAQYNQVLASLKS 1027
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
161-599 |
2.92e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.09 E-value: 2.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 161 NKQLSSTIEELKQQNQDTLDQLEKEKKDYQQKLAKEQgSLREQLQVhiqtigiLVSEKAELQTALAHTQQAARQKAGESE 240
Cdd:TIGR04523 213 NKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEIS-NTQTQLNQ-------LKDEQNKIKKQLSEKQKELEQNNKKIK 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 241 DLASRLQSSRQRVGELErtlstvstQQKQADrYNKDLT-------KERDALKLELYKNSKSNEDLRQQNSELEEKLRVLV 313
Cdd:TIGR04523 285 ELEKQLNQLKSEISDLN--------NQKEQD-WNKELKselknqeKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSE 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 314 AEKAAAQLGVEELQKKLEMSE-------LLLQQFSSQSSAAggNEQLQHAMEERAQLETHVSQLMESLKQLQVErdqyAE 386
Cdd:TIGR04523 356 SENSEKQRELEEKQNEIEKLKkenqsykQEIKNLESQINDL--ESKIQNQEKLNQQKDEQIKKLQQEKELLEKE----IE 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 387 NLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEppagpseaeEQLQGEVEQLHKELER 466
Cdd:TIGR04523 430 RLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNL---------EQKQKELKSKEKELKK 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 467 LTGQLRaqvQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRAL--SQNRELKEQLAELQNGF 544
Cdd:TIGR04523 501 LNEEKK---ELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENleKEIDEKNKEIEELKQTQ 577
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 1676318910 545 VRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQ 599
Cdd:TIGR04523 578 KSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSI 632
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
450-881 |
3.64e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.84 E-value: 3.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 450 EEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALS- 528
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQl 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 529 -----QNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVElksQEAQGLQEQrdqc 603
Cdd:COG4717 128 lplyqELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATE---EELQDLAEE---- 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 604 LSHLQQYAAAYQQHLaayEQLTSEKEAIHKQLllqtqlmdqlqhEEVQGKMAAELARQELQEAQERLKATS-------QE 676
Cdd:COG4717 201 LEELQQRLAELEEEL---EEAQEELEELEEEL------------EQLENELEAAALEERLKEARLLLLIAAallallgLG 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 677 NQQLQAQLSLLVLPGEGDVDQEEEDEEVPQSSLAIPEDLDSREAMVAFFNAAIARAEEEQARLRVQLKEQKARCRSLSHL 756
Cdd:COG4717 266 GSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDR 345
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 757 AAPVQSKLEKEAVVPRNVDDSASEESNQAL----HVAMEKLQSRFLEVMQEKVELKERVEELEHcciQLSGETDTIGEYI 832
Cdd:COG4717 346 IEELQELLREAEELEEELQLEELEQEIAALlaeaGVEDEEELRAALEQAEEYQELKEELEELEE---QLEELLGELEELL 422
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 1676318910 833 AlyQNQRAVLKARHLEKEEYISRLAQDKEEMKVKLLELQELVLRLVNER 881
Cdd:COG4717 423 E--ALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDG 469
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
397-667 |
4.44e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.37 E-value: 4.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 397 QRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPP----AGPSEAEEQLQGEVEQLHKELERLTGQLR 472
Cdd:PRK03918 186 KRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKEleelKEEIEELEKELESLEGSKRKLEEKIRELE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 473 AQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLtnenm 552
Cdd:PRK03918 266 ERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERL----- 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 553 eitsalqseqhvkKELARKLGELQERLGELKETVELkSQEAQGLQEQRDQCLSHLQQYAAayQQHLAAYEQLTSEKEAIH 632
Cdd:PRK03918 341 -------------EELKKKLKELEKRLEELEERHEL-YEEAKAKKEELERLKKRLTGLTP--EKLEKELEELEKAKEEIE 404
|
250 260 270
....*....|....*....|....*....|....*
gi 1676318910 633 KQLLLQTQLMDQLQHEEVQGKMAAElarqELQEAQ 667
Cdd:PRK03918 405 EEISKITARIGELKKEIKELKKAIE----ELKKAK 435
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
396-602 |
5.79e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 5.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 396 QQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAgpSEAEEQLQGEVEQLHKELERLTGQLRAQV 475
Cdd:COG4942 33 QQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAAL--EAELAELEKEIAELRAELEAQKEELAELL 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 476 QDNESLSHLNREQE----GRLLELEREAQRWSEQAEERKQILEsmqsdrttisralsqnrELKEQLAELQNGFVRLTNEN 551
Cdd:COG4942 111 RALYRLGRQPPLALllspEDFLDAVRRLQYLKYLAPARREQAE-----------------ELRADLAELAALRAELEAER 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1676318910 552 MEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQ 602
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEE 224
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
367-815 |
6.56e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.68 E-value: 6.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 367 VSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQV---HTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPP 443
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEeeyAELQEELEELEEELEELEAELEELREELEKLEKLLQL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 444 AGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERkqilesMQSDRTTI 523
Cdd:COG4717 128 LPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEE------LQDLAEEL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 524 SRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKK--ELARKLGELQERLGELKETVELKSQEAQGLQEQRD 601
Cdd:COG4717 202 EELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERlkEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFL 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 602 QCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAELARQELQEAQERLKATSQENQQLQ 681
Cdd:COG4717 282 VLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEE 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 682 AQLSLlvlpgegdvdqeeedeevpqsslaipedlDSREAMVAFFNAAIARAEEEQARLRVQLKEQKARCRSLSHLAAPVQ 761
Cdd:COG4717 362 ELQLE-----------------------------ELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLE 412
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 1676318910 762 SKLEKEAVVPRNVDDSASEESNQALHVAMEKLQSRFLEVMQEKVELKERVEELE 815
Cdd:COG4717 413 ELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLE 466
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
247-500 |
7.25e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.55 E-value: 7.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 247 QSSRQRVGELERTLSTVstqQKQADRYNKDLtkERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEEL 326
Cdd:COG3206 164 QNLELRREEARKALEFL---EEQLPELRKEL--EEAEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEA 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 327 QKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLEThvsqlmeslkQLQVERDQYAENlkgesamwQQRVQQMAEQV 406
Cdd:COG3206 239 EARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEA----------ELAELSARYTPN--------HPDVIALRAQI 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 407 HTLKEEKEHRERQV-QELETSLAALRSQmeeppppeppagpseaEEQLQGEVEQLHKELERLTgqlraqvqdneslshln 485
Cdd:COG3206 301 AALRAQLQQEAQRIlASLEAELEALQAR----------------EASLQAQLAQLEARLAELP----------------- 347
|
250
....*....|....*
gi 1676318910 486 rEQEGRLLELEREAQ 500
Cdd:COG3206 348 -ELEAELRRLEREVE 361
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
162-542 |
1.08e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.17 E-value: 1.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 162 KQLSSTIEELKQQ-NQDTLDQLEKEKKDYQQKLAKEQGSLREQLQVHIQ---TIGILVSEKAELQTALAHTQQAARQKAG 237
Cdd:TIGR04523 291 NQLKSEISDLNNQkEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQlneQISQLKKELTNSESENSEKQRELEEKQN 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 238 ESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKA 317
Cdd:TIGR04523 371 EIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDS 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 318 AAQLGVEELQKKLEMSELLLQQFSSQSsaaggNEQLQHAMEERAQLETHVSQLmESLKQLQVERDQYAENLKGESAMWQQ 397
Cdd:TIGR04523 451 VKELIIKNLDNTRESLETQLKVLSRSI-----NKIKQNLEQKQKELKSKEKEL-KKLNEEKKELEEKVKDLTKKISSLKE 524
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 398 RVQQmaeqvhtLKEEKEHRERQVQELETSLAALRSQMEEppppeppagpseaeEQLQGEVEQLHKELERLTgqlraqvQD 477
Cdd:TIGR04523 525 KIEK-------LESEKKEKESKISDLEDELNKDDFELKK--------------ENLEKEIDEKNKEIEELK-------QT 576
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1676318910 478 NESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDrttISRALSQNRELKEQLAELQN 542
Cdd:TIGR04523 577 QKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKE---LEKAKKENEKLSSIIKNIKS 638
|
|
| COG4995 |
COG4995 |
Uncharacterized conserved protein, contains CHAT domain [Function unknown]; |
111-529 |
1.54e-04 |
|
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
Pssm-ID: 444019 [Multi-domain] Cd Length: 711 Bit Score: 45.73 E-value: 1.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 111 SLRQLSQQLNGLVSESTSYINGEGLTSSNMKELENRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLDQLEKEKKDYQ 190
Cdd:COG4995 35 AAALLLLALLALLLALAAAAAAALAAAALALALLAAAALALLLLALALAALALALLAAALALALAAAALAALALLAALLA 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 191 QKLAKEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQA 270
Cdd:COG4995 115 LAAAAALLALLAALALLALLAALAAALAAAAAAALAAALAAAAAAAAAAALLALALALAAAALALLALLLAALAAALAAA 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 271 DRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGGN 350
Cdd:COG4995 195 AAALALLLALLLLAALAAALAAALAALLLALLALAAALLALLLLALLALAAAAAALAAAAAALLALAAALLLLAALAALA 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 351 EQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAAL 430
Cdd:COG4995 275 AAAAAAALAALALAAALALAAAALALALLLAAAAAAALAALALLLLAALLLLLAALALLALLLLLAAAALLAAALAAALA 354
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 431 RSQMEEPPPPEPPAGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERK 510
Cdd:COG4995 355 LAAALALALLAALLLLLAALLALLLEALLLLLLALLAALLLLAAALLALAAAQLLRLLLAALALLLALAAYAAARLALLA 434
|
410
....*....|....*....
gi 1676318910 511 QILESMQSDRTTISRALSQ 529
Cdd:COG4995 435 LIEYIILPDRLYAFVQLYQ 453
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
141-635 |
1.81e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 45.55 E-value: 1.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 141 KELENRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLDQLEKEKkDYQQKLAKEQGSLREQLQVHIQTIGILVSEKAE 220
Cdd:pfam01576 71 QELEEILHELESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEE-AARQKLQLEKVTTEAKIKKLEEDILLLEDQNSK 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 221 LQ---TALAHTQQAARQKAGESEDLASRLQSSRQRvgeLERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNED 297
Cdd:pfam01576 150 LSkerKLLEERISEFTSNLAEEEEKAKSLSKLKNK---HEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAE 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 298 LRQQNSELEEKLRVLVAEKAAAQLGVEElqKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQL 377
Cdd:pfam01576 227 LQAQIAELRAQLAKKEEELQAALARLEE--ETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEAL 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 378 QVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEP--PPPEPPAGPSEAEEQLQG 455
Cdd:pfam01576 305 KTELEDTLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQleQAKRNKANLEKAKQALES 384
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 456 EVEQLHKELERLTGQlraqVQDNEslsHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRAL-------- 527
Cdd:pfam01576 385 ENAELQAELRTLQQA----KQDSE---HKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLneaegkni 457
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 528 ----------SQNRELKEQLAE-------LQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKS 590
Cdd:pfam01576 458 klskdvssleSQLQDTQELLQEetrqklnLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDA 537
|
490 500 510 520
....*....|....*....|....*....|....*....|....*
gi 1676318910 591 QEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQL 635
Cdd:pfam01576 538 GTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQEL 582
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
169-387 |
2.23e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 45.33 E-value: 2.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 169 EELKQQNQDTLDQLEKEKKDYQQKLAKEQ------------------------------GSLREQLQVHIQTIG-ILVSE 217
Cdd:PRK04863 382 EARAEAAEEEVDELKSQLADYQQALDVQQtraiqyqqavqalerakqlcglpdltadnaEDWLEEFQAKEQEATeELLSL 461
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 218 KAELQTALAHTQQ----------------------AARQKAGESED---LASRLQSSRQRVGELERTLSTVSTQQKQADR 272
Cdd:PRK04863 462 EQKLSVAQAAHSQfeqayqlvrkiagevsrseawdVARELLRRLREqrhLAEQLQQLRMRLSELEQRLRQQQRAERLLAE 541
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 273 YNKDLTKERDAlklelyknsksNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSS--------QS 344
Cdd:PRK04863 542 FCKRLGKNLDD-----------EDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAArapawlaaQD 610
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1676318910 345 SAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAEN 387
Cdd:PRK04863 611 ALARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAAR 653
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
219-540 |
2.32e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.29 E-value: 2.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 219 AELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQAdrynkDLTKERDALKLELYKNSKSNEDL 298
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVA-----SAEREIAELEAELERLDASSDDL 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 299 R---QQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLqhamEERAQLETHVSQLMESLK 375
Cdd:COG4913 688 AaleEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARL----ELRALLEERFAAALGDAV 763
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 376 QLQVeRDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRerqVQELETSLAALRSQMEEPPPPEPPAGPsEAEEQLQG 455
Cdd:COG4913 764 EREL-RENLEERIDALRARLNRAEEELERAMRAFNREWPAE---TADLDADLESLPEYLALLDRLEEDGLP-EYEERFKE 838
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 456 EV-EQLHKELERLTGQLRAQVQD--------NESLSHLnREQEGRLLELEREAQRwSEQAEERKQILESMQSDRTTISRA 526
Cdd:COG4913 839 LLnENSIEFVADLLSKLRRAIREikeridplNDSLKRI-PFGPGRYLRLEARPRP-DPEVREFRQELRAVTSGASLFDEE 916
|
330
....*....|....
gi 1676318910 527 LSQNRElkEQLAEL 540
Cdd:COG4913 917 LSEARF--AALKRL 928
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
238-851 |
2.86e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.03 E-value: 2.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 238 ESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRynkdlTKERDALKLELYKNSKSN-EDLRQQNSELEEKLRVLVAEK 316
Cdd:PRK02224 200 EEKDLHERLNGLESELAELDEEIERYEEQREQARE-----TRDEADEVLEEHEERREElETLEAEIEDLRETIAETERER 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 317 AAAQLGVEELQKKLEmsELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQY---AENLKGESA 393
Cdd:PRK02224 275 EELAEEVRDLRERLE--ELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHneeAESLREDAD 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 394 MWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGpsEAEEQLQGEVEQLHKELERLTGQLRA 473
Cdd:PRK02224 353 DLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAP--VDLGNAEDFLEELREERDELREREAE 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 474 QVQDNESLShlNREQEGRLLeleREAQRWSE--QAEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNen 551
Cdd:PRK02224 431 LEATLRTAR--ERVEEAEAL---LEAGKCPEcgQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAED-- 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 552 meitsalqseqhvKKELARKLGELQERLgelKETVELKSQEAQGLQEQRDQClshlqqyaaayqqhlaayEQLTSEKeai 631
Cdd:PRK02224 504 -------------LVEAEDRIERLEERR---EDLEELIAERRETIEEKRERA------------------EELRERA--- 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 632 hkqlllqtqlmDQLQHEEVQGKMAAELARQELQEAQERLKATSQENQqlqaqlsllvlpgegdvdqeeedeevpqsslAI 711
Cdd:PRK02224 547 -----------AELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLA-------------------------------EL 584
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 712 PEDLDSREAMVAFFnAAIARAEEEQARLRVQLKEQKARCR-SLSHLAAPVQSKLEKEAVVPRNVDDSASEESNQA----- 785
Cdd:PRK02224 585 KERIESLERIRTLL-AAIADAEDEIERLREKREALAELNDeRRERLAEKRERKRELEAEFDEARIEEAREDKERAeeyle 663
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1676318910 786 --------LHVAMEKLQSRFLEV---MQEKVELKERVEELEHCCIQLSGETDTIGEYIALYQNQRAVLKARHLEKEE 851
Cdd:PRK02224 664 qveekldeLREERDDLQAEIGAVeneLEELEELRERREALENRVEALEALYDEAEELESMYGDLRAELRQRNVETLE 740
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
164-389 |
3.43e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.62 E-value: 3.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 164 LSSTIEELKQQNQDTLDQLEKEKKDYQQKLAKEQGSLREQLQVHI-----QTIGILVSEKAELQTALAHTQQAARQKAGE 238
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGlvdlsEEAKLLLQQLSELESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 239 SEDLASRLQSSRQRVGELERTLSTVSTQQKQAdrynkDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAE-KA 317
Cdd:COG3206 242 LAALRAQLGSGPDALPELLQSPVIQQLRAQLA-----ELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRiLA 316
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1676318910 318 AAQLGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHV-SQLMESLKQLQVERDQYAENLK 389
Cdd:COG3206 317 SLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELyESLLQRLEEARLAEALTVGNVR 389
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
139-485 |
4.34e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 44.35 E-value: 4.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 139 NMKELENRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLdqlekEKKDYQQKLA------KEQGSLRE---QLQVHIQ 209
Cdd:pfam05557 147 KASEAEQLRQNLEKQQSSLAEAEQRIKELEFEIQSQEQDSE-----IVKNSKSELAripeleKELERLREhnkHLNENIE 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 210 TIGILVSEKAELQTALAHTQQAARQKAG---ESEDLASRLQSSR---QRVGELERTLSTVSTQQKQADRYNKDLTKErda 283
Cdd:pfam05557 222 NKLLLKEEVEDLKRKLEREEKYREEAATlelEKEKLEQELQSWVklaQDTGLNLRSPEDLSRRIEQLQQREIVLKEE--- 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 284 lklelyknsksNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELL---------------------LQQFSS 342
Cdd:pfam05557 299 -----------NSSLTSSARQLEKARRELEQELAQYLKKIEDLNKKLKRHKALvrrlqrrvllltkerdgyraiLESYDK 367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 343 QSSAAGGNEQLQHAMEERAQL----ETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQ--------MAEQVHTLK 410
Cdd:pfam05557 368 ELTMSNYSPQLLERIEEAEDMtqkmQAHNEEMEAQLSVAEEELGGYKQQAQTLERELQALRQQesladpsySKEEVDSLR 447
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 411 EEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGP------------SEAEEQLQGEVEQLHKELERLTGQLRAQVQDN 478
Cdd:pfam05557 448 RKLETLELERQRLREQKNELEMELERRCLQGDYDPKktkvlhlsmnpaAEAYQQRKNQLEKLQAEIERLKRLLKKLEDDL 527
|
....*..
gi 1676318910 479 ESLSHLN 485
Cdd:pfam05557 528 EQVLRLP 534
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
157-648 |
4.58e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 44.24 E-value: 4.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 157 SYVTNKQLSSTIEELKQQNQDTLDQLEKEKKDYQQKLAKEQGSLREQLQVHIQ---TIGILVSEKAELQTALAHTQQAAR 233
Cdd:TIGR04523 20 SYVGYKNIANKQDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNsnnKIKILEQQIKDLNDKLKKNKDKIN 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 234 QKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLV 313
Cdd:TIGR04523 100 KLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLE 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 314 AEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGG-NEQLQHAMEERAQLETHVSQLMESLKQLQVE---RDQYAENLK 389
Cdd:TIGR04523 180 KEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSlESQISELKKQNNQLKDNIEKKQQEINEKTTEisnTQTQLNQLK 259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 390 GESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEeppppeppagpSEAEEQLQGEVEQLHKELERLTG 469
Cdd:TIGR04523 260 DEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKE-----------QDWNKELKSELKNQEKKLEEIQN 328
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 470 QLRaqvQDNESLSHLNRE---QEGRLLELEREAQRWSEQAEERKQILESMQSDrttISRALSQNRELKEQLAELQNGFVR 546
Cdd:TIGR04523 329 QIS---QNNKIISQLNEQisqLKKELTNSESENSEKQRELEEKQNEIEKLKKE---NQSYKQEIKNLESQINDLESKIQN 402
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 547 LTNENMEITSALQSEQHVKKELARKLGELQERLGELKETV-ELKSQEAQG--LQEQRDQCLSHLQQYAAAYqqhLAAYEQ 623
Cdd:TIGR04523 403 QEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIkDLTNQDSVKelIIKNLDNTRESLETQLKVL---SRSINK 479
|
490 500
....*....|....*....|....*
gi 1676318910 624 LTSEKEAIHKQLLLQTQLMDQLQHE 648
Cdd:TIGR04523 480 IKQNLEQKQKELKSKEKELKKLNEE 504
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
234-676 |
4.79e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.94 E-value: 4.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 234 QKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSN----EDLR-------QQN 302
Cdd:pfam05483 251 EKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQkaleEDLQiatkticQLT 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 303 SELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQqfSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERD 382
Cdd:pfam05483 331 EEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLR--TEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELE 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 383 QYAENLKGESAMW--QQRVQQMAEQVHTLKEE----KEHRERQVQELETSLAALRSqmeeppppeppagpseAEEQLQGE 456
Cdd:pfam05483 409 ELKKILAEDEKLLdeKKQFEKIAEELKGKEQEliflLQAREKEIHDLEIQLTAIKT----------------SEEHYLKE 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 457 VEQLHKELErltgqlRAQVQDNESLSHLNReqegRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQ 536
Cdd:pfam05483 473 VEDLKTELE------KEKLKNIELTAHCDK----LLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEK 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 537 LAELQNGFVRLTNENMEITSALQSEQHVKKELAR-----------KLGELQERLGELKETVELKSQEAQGLQEQRDQcls 605
Cdd:pfam05483 543 EMNLRDELESVREEFIQKGDEVKCKLDKSEENARsieyevlkkekQMKILENKCNNLKKQIENKNKNIEELHQENKA--- 619
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1676318910 606 hLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAElarQELQEAQERLKATSQE 676
Cdd:pfam05483 620 -LKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISE---EKLLEEVEKAKAIADE 686
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
101-374 |
5.33e-04 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 43.89 E-value: 5.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 101 EETKTFSSTESLRQLSQQL---NGLVSESTSYINGEGLTSSNMKELENRYQELAVALDSSYVTNKQLsstiEELKQQNQD 177
Cdd:PRK10929 128 EQDRAREISDSLSQLPQQQteaRRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKALVDELEL----AQLSANNRQ 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 178 TLDQLEKE--KKDYQQKLAKEQGsLREQLQVHIQtigilvsEKAELqtALAHTQQAARQKAGESEDLASRLQSSRQRVGE 255
Cdd:PRK10929 204 ELARLRSElaKKRSQQLDAYLQA-LRNQLNSQRQ-------REAER--ALESTELLAEQSGDLPKSIVAQFKINRELSQA 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 256 LE---RTLSTVSTQQKQADrynKDLTKERDALKlELYKNSK----SN---EDLRQQNSELEEKLRVLVAEKAAAQLGVee 325
Cdd:PRK10929 274 LNqqaQRMDLIASQQRQAA---SQTLQVRQALN-TLREQSQwlgvSNalgEALRAQVARLPEMPKPQQLDTEMAQLRV-- 347
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1676318910 326 lqKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEE--RAQLETHvSQLMESL 374
Cdd:PRK10929 348 --QRLRYEDLLNKQPQLRQIRQADGQPLTAEQNRilDAQLRTQ-RELLNSL 395
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
450-676 |
5.57e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 5.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 450 EEQLQGEVEQLHKELERLTGQL---RAQVqdneslshlnREQEGRLLELeREAQRWSEQAEERKQILESMQSDRTTISRA 526
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLpelRKEL----------EEAEAALEEF-RQKNGLVDLSEEAKLLLQQLSELESQLAEA 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 527 LSQNRELKEQLAELQNgfvRLTNENMEITSALQSEqhVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSH 606
Cdd:COG3206 232 RAELAEAEARLAALRA---QLGSGPDALPELLQSP--VIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQ 306
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1676318910 607 LQQYAAAYQQHL-AAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMA---AELARQELQEAQERLKATSQE 676
Cdd:COG3206 307 LQQEAQRILASLeAELEALQAREASLQAQLAQLEARLAELPELEAELRRLereVEVARELYESLLQRLEEARLA 380
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
148-433 |
5.82e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.17 E-value: 5.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 148 QELAVALDSSyvtNKQLSSTIEELKQQNQDTLDQLEKEKKDYQQKL--AKEQGSLREQLQ---------VHIQTIGILVS 216
Cdd:COG3096 824 GHLAVAFAPD---PEAELAALRQRRSELERELAQHRAQEQQLRQQLdqLKEQLQLLNKLLpqanlladeTLADRLEELRE 900
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 217 EKAELQTALAHTQQAARQkAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSksnE 296
Cdd:COG3096 901 ELDAAQEAQAFIQQHGKA-LAQLEPLVAVLQSDPEQFEQLQADYLQAKEQQRRLKQQIFALSEVVQRRPHFSYEDA---V 976
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 297 DLRQQNSELEEKLR--VLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESl 374
Cdd:COG3096 977 GLLGENSDLNEKLRarLEQAEEARREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQELEELGVQADAEAEE- 1055
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 1676318910 375 kQLQVERDQyaenLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQ 433
Cdd:COG3096 1056 -RARIRRDE----LHEELSQNRSRRSQLEKQLTRCEAEMDSLQKRLRKAERDYKQEREQ 1109
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
344-540 |
8.21e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 8.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 344 SSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGEsamwQQRVQQMAEQVHTLKEEKEHRERQVQEL 423
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAAL----ERRIAALARRIRALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 424 ETSLAALRSQMEEPPPPEPP--------------------AGPSEAE---EQLQGEVEQLHKELERLTGQLRAQVQDNES 480
Cdd:COG4942 89 EKEIAELRAELEAQKEELAEllralyrlgrqpplalllspEDFLDAVrrlQYLKYLAPARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 481 LSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQLAEL 540
Cdd:COG4942 169 LEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
447-660 |
8.31e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.47 E-value: 8.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 447 SEAEEQLQGEVEQLHKELERLTGQLRAQVQDN-------------ESLSHLNREQ---EGRLLELEREAQRWSEQAEERK 510
Cdd:COG3206 174 RKALEFLEEQLPELRKELEEAEAALEEFRQKNglvdlseeaklllQQLSELESQLaeaRAELAEAEARLAALRAQLGSGP 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 511 QILESMQSDrTTISRALSQNRELKEQLAELQNgfvRLTNENMEITSALQSEQHVKKELARklgELQERLGELKETVELKS 590
Cdd:COG3206 254 DALPELLQS-PVIQQLRAQLAELEAELAELSA---RYTPNHPDVIALRAQIAALRAQLQQ---EAQRILASLEAELEALQ 326
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 591 QEAQGLQEQRDQclshLQQYAAAYQQHLAAYEQLTSEKEAIHKQLllqTQLMDQLQHEEVQGKMAAELAR 660
Cdd:COG3206 327 AREASLQAQLAQ----LEARLAELPELEAELRRLEREVEVARELY---ESLLQRLEEARLAEALTVGNVR 389
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
284-645 |
8.57e-04 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 43.50 E-value: 8.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 284 LKLELyKNSKSNEDLRQQNS--ELEEKLRVLVAEKAAAQlGVEELQKKLE----MSELLLQQFSSQSSAAGGNEQLQHAM 357
Cdd:PRK10929 28 ITQEL-EQAKAAKTPAQAEIveALQSALNWLEERKGSLE-RAKQYQQVIDnfpkLSAELRQQLNNERDEPRSVPPNMSTD 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 358 EERAQLETHVSQLMESLKQLQVERDqyaenlkgesamwqqRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEP 437
Cdd:PRK10929 106 ALEQEILQVSSQLLEKSRQAQQEQD---------------RAREISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNTPL 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 438 PPPEPPAGPSEAE------EQLqgEVEQL----HKELERLTG--------QLRAQVQDNESLSHLNREQEGRlLELEREA 499
Cdd:PRK10929 171 AQAQLTALQAESAalkalvDEL--ELAQLsannRQELARLRSelakkrsqQLDAYLQALRNQLNSQRQREAE-RALESTE 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 500 QRWSEQAEERKQILESMQSDRtTISRALSQNRELKEQLAELQNgfvRLTNENMEITSALQS--EQHVKKELARKLGE-LQ 576
Cdd:PRK10929 248 LLAEQSGDLPKSIVAQFKINR-ELSQALNQQAQRMDLIASQQR---QAASQTLQVRQALNTlrEQSQWLGVSNALGEaLR 323
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1676318910 577 ---ERLGELKETVELKSQEAQgLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAI-HKQLLLQTQLMDQL 645
Cdd:PRK10929 324 aqvARLPEMPKPQQLDTEMAQ-LRVQRLRYEDLLNKQPQLRQIRQADGQPLTAEQNRIlDAQLRTQRELLNSL 395
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
150-376 |
9.43e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 9.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 150 LAVALDSSYVTNKQLSSTIEELKQQnqdtLDQLEKEkkdyQQKLAKEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQ 229
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQE----IAELEKE----LAALKKEEKALLKQLAALERRIAALARRIRALEQELAALE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 230 QAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQK-----------QADR---YNKDLTKERDALKLELYKNSKSN 295
Cdd:COG4942 83 AELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPlalllspedflDAVRrlqYLKYLAPARREQAEELRADLAEL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 296 EDLRQQNSELEEKLRVLVAEKAAAQlgvEELQKKLEMSELLLQQFSSQSSAAggNEQLQHAMEERAQLETHVSQLMESLK 375
Cdd:COG4942 163 AALRAELEAERAELEALLAELEEER---AALEALKAERQKLLARLEKELAEL--AAELAELQQEAEELEALIARLEAEAA 237
|
.
gi 1676318910 376 Q 376
Cdd:COG4942 238 A 238
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
260-581 |
9.54e-04 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 43.02 E-value: 9.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 260 LSTVSTQQKQADryNKDLTKERDALKLELYKNSKSNEDLRQQN-SELEEKLRVLVAEKAAAQLGVEELQKKLEMSElllQ 338
Cdd:COG5185 229 INIEEALKGFQD--PESELEDLAQTSDKLEKLVEQNTDLRLEKlGENAESSKRLNENANNLIKQFENTKEKIAEYT---K 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 339 QFSSQSSAAGGNEQLQhAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGEsamwQQRVQQMAEQVHTLkEEKEHRER 418
Cdd:COG5185 304 SIDIKKATESLEEQLA-AAEAEQELEESKRETETGIQNLTAEIEQGQESLTEN----LEAIKEEIENIVGE-VELSKSSE 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 419 QVQELETSLAALRSQMEEPPPPEPPAGPsEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELERE 498
Cdd:COG5185 378 ELDSFKDTIESTKESLDEIPQNQRGYAQ-EILATLEDTLKAADRQIEELQRQIEQATSSNEEVSKLLNELISELNKVMRE 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 499 AQ--RWSEQAEERKQILESMQSDRTTISRALSQ-NRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGEL 575
Cdd:COG5185 457 ADeeSQSRLEEAYDEINRSVRSKKEDLNEELTQiESRVSTLKATLEKLRAKLERQLEGVRSKLDQVAESLKDFMRARGYA 536
|
....*.
gi 1676318910 576 QERLGE 581
Cdd:COG5185 537 HILALE 542
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
169-407 |
1.13e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.02 E-value: 1.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 169 EELKQQNQDTLDQLEKEKKDYQQKL------------------------------------------AKEQG------SL 200
Cdd:COG3096 381 EARLEAAEEEVDSLKSQLADYQQALdvqqtraiqyqqavqalekaralcglpdltpenaedylaafrAKEQQateevlEL 460
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 201 REQLQV-------HIQTIGILVSEKAELQTALAHtqQAARQ---KAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQA 270
Cdd:COG3096 461 EQKLSVadaarrqFEKAYELVCKIAGEVERSQAW--QTAREllrRYRSQQALAQRLQQLRAQLAELEQRLRQQQNAERLL 538
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 271 DRYNKDLTKERDAlklelyknsksNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSS-------- 342
Cdd:COG3096 539 EEFCQRIGQQLDA-----------AEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAArapawlaa 607
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1676318910 343 QSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENlkgesamwQQRVQQMAEQVH 407
Cdd:COG3096 608 QDALERLREQSGEALADSQEVTAAMQQLLEREREATVERDELAAR--------KQALESQIERLS 664
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
499-676 |
1.29e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 1.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 499 AQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQER 578
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 579 LGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAEL 658
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170
....*....|....*...
gi 1676318910 659 ARQELQEAQERLKATSQE 676
Cdd:COG4942 179 LLAELEEERAALEALKAE 196
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
141-329 |
1.32e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.75 E-value: 1.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 141 KELENRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLDQlEKEKKDYQQKLAKEQGSLREQLQVHIQTIGILVSEKAE 220
Cdd:TIGR02169 808 SRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQ-IKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGD 886
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 221 LQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNK-------------DLTKERDALKLE 287
Cdd:TIGR02169 887 LKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGedeeipeeelsleDVQAELQRVEEE 966
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1676318910 288 LYKNSKSN-------EDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKK 329
Cdd:TIGR02169 967 IRALEPVNmlaiqeyEEVLKRLDELKEKRAKLEEERKAILERIEEYEKK 1015
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
396-620 |
1.73e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 1.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 396 QQRVQQMAEQVHTLKEEKEHRER------QVQELETSLAALRSQMEEPPPPEPPagpsEAEEQLQGEVEQLHKELERLTG 469
Cdd:COG4913 241 HEALEDAREQIELLEPIRELAERyaaareRLAELEYLRAALRLWFAQRRLELLE----AELEELRAELARLEAELERLEA 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 470 QLRAQVQDNESLSHLNREQEGRLLE-LEREAQRWSEQAEERKQilesmqsdrttisralsqnrelkeQLAELQNGFVRLT 548
Cdd:COG4913 317 RLDALREELDELEAQIRGNGGDRLEqLEREIERLERELEERER------------------------RRARLEALLAALG 372
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1676318910 549 NENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAA 620
Cdd:COG4913 373 LPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLA 444
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
161-676 |
1.74e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 42.21 E-value: 1.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 161 NKQLSSTIEELKQQNQDTLDQLEKeKKDYQQKLAKeqgsLREQLQvhiqtigilvsekaelqtalahtqqaarqkagese 240
Cdd:PRK11281 51 QKLLEAEDKLVQQDLEQTLALLDK-IDRQKEETEQ----LKQQLA----------------------------------- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 241 dlasrlqssrqrvgelertlstvstqqkQADRYNKDLTKERDALKlelyknSKSNEDLRQQNSeleeklrvlvaekaaaQ 320
Cdd:PRK11281 91 ----------------------------QAPAKLRQAQAELEALK------DDNDEETRETLS----------------T 120
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 321 LGVEELQKKLEmsELLLQQFSSQSSAAGGNEQL--QHAMEERAQlethvSQLMESlkqlqverdqyaenlkgesamwQQR 398
Cdd:PRK11281 121 LSLRQLESRLA--QTLDQLQNAQNDLAEYNSQLvsLQTQPERAQ-----AALYAN----------------------SQR 171
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 399 VQQMAEQVHTLKEEKEH-RERQVQELETSLAALRSQMEEPPPPEppagpsEAEEQLQGEVEQLHKELERLTGQLRAQVQD 477
Cdd:PRK11281 172 LQQIRNLLKGGKVGGKAlRPSQRVLLQAEQALLNAQNDLQRKSL------EGNTQLQDLLQKQRDYLTARIQRLEHQLQL 245
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 478 NESLshLNREqegRLLELEREAQrwseQAEERKQILESMQSDrtTISRALSQNRELKEQLAELQNGFVRLTNENMEIT-- 555
Cdd:PRK11281 246 LQEA--INSK---RLTLSEKTVQ----EAQSQDEAARIQANP--LVAQELEINLQLSQRLLKATEKLNTLTQQNLRVKnw 314
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 556 --SALQSEQHVKKE---------LARKLGELQERLGELKETVELKSQEAQ------GLQEQRDQcLSHLQQYAAAYQQHl 618
Cdd:PRK11281 315 ldRLTQSERNIKEQisvlkgsllLSRILYQQQQALPSADLIEGLADRIADlrleqfEINQQRDA-LFQPDAYIDKLEAG- 392
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1676318910 619 aayeQLTSEKEAIHKQL--LLQT--QLMDQLQHEEVQGKMAA---ELARQELQEAQERLKATSQE 676
Cdd:PRK11281 393 ----HKSEVTDEVRDALlqLLDErrELLDQLNKQLNNQLNLAinlQLNQQQLLSVSDSLQSTLTQ 453
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
451-767 |
1.74e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.36 E-value: 1.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 451 EQLQGEVEQLHKELERLTGQLRAQVQDNESLSHlNREQEGRLLELEREAQRWseqaeERKQILESMQSDRTTISRALSQN 530
Cdd:TIGR02169 173 EKALEELEEVEENIERLDLIIDEKRQQLERLRR-EREKAERYQALLKEKREY-----EGYELLKEKEALERQKEAIERQL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 531 RELKEQLAELQngfVRLTNENMEITSALQSEQHVKKELARKLGELQERLGElkETVELKSQEAQgLQEQRDQCLSHLQQY 610
Cdd:TIGR02169 247 ASLEEELEKLT---EEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKE--KIGELEAEIAS-LERSIAEKERELEDA 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 611 AAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAELARQELQEAQERLKATSQENQQLQAQLSLLVLP 690
Cdd:TIGR02169 321 EERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKRE 400
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1676318910 691 GEGDVDQEEEDEevpqsslaipEDLDSREAMVAFFNAAIARAEEEQARLRVQLKEQKARCRSLSHLAAPVQSKLEKE 767
Cdd:TIGR02169 401 INELKRELDRLQ----------EELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKY 467
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
246-510 |
2.27e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.25 E-value: 2.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 246 LQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDAL-KLELYKNSKSNEDLRQQNSELEEKL-RVLVAEKAAAQLGV 323
Cdd:PRK04863 839 LRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALnRLLPRLNLLADETLADRVEEIREQLdEAEEAKRFVQQHGN 918
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 324 -------------------EELQKKLEMSELLLQQFSSQSSA---------AGGNEQLQHAMEERAQLethVSQLMESLK 375
Cdd:PRK04863 919 alaqlepivsvlqsdpeqfEQLKQDYQQAQQTQRDAKQQAFAltevvqrraHFSYEDAAEMLAKNSDL---NEKLRQRLE 995
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 376 QLQVERDQYAENLKGEsamwQQRVQQmAEQVHT-LKEEKEHRERQVQELETSLAALRSQmeeppppeppaGPSEAEEQLQ 454
Cdd:PRK04863 996 QAEQERTRAREQLRQA----QAQLAQ-YNQVLAsLKSSYDAKRQMLQELKQELQDLGVP-----------ADSGAEERAR 1059
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1676318910 455 GEVEQLHKELeRLTGQLRAQVQDNESLSHLN-REQEGRLLELEREAQRWSEQAEERK 510
Cdd:PRK04863 1060 ARRDELHARL-SANRSRRNQLEKQLTFCEAEmDNLTKKLRKLERDYHEMREQVVNAK 1115
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
137-359 |
2.98e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.58 E-value: 2.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 137 SSNMKELENRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLDQLEKEKKDyQQKLAKEQGSLREQLQVHIQTIGILVS 216
Cdd:TIGR02168 802 REALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSED-IESLAAEIEELEELIEELESELEALLN 880
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 217 EKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQAD---RYNKDLTKERDALKLELYKNSK 293
Cdd:TIGR02168 881 ERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEvriDNLQERLSEEYSLTLEEAEALE 960
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1676318910 294 SNEDLRQQnsELEEKLRVLvaEKAAAQLG------VEELQKKLEMSELLLQQFSSQSSAAggnEQLQHAMEE 359
Cdd:TIGR02168 961 NKIEDDEE--EARRRLKRL--ENKIKELGpvnlaaIEEYEELKERYDFLTAQKEDLTEAK---ETLEEAIEE 1025
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
168-668 |
3.00e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.48 E-value: 3.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 168 IEELKQQNQDTLDQLEKEKKDYQQKLAKEQGSLREqlqvHIQTIGILVSEKAELQTALAHtqQAARQ---KAGESEDLAS 244
Cdd:COG3096 439 AEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQ----FEKAYELVCKIAGEVERSQAW--QTAREllrRYRSQQALAQ 512
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 245 RLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDAlklelyknsksNEDLRQQNSELEEKLRVLVAEKAAAQLGVE 324
Cdd:COG3096 513 RLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDA-----------AEELEELLAELEAQLEELEEQAAEAVEQRS 581
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 325 ELQKKLEMSELLLQQFSS--------QSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQyaenlkgesamwq 396
Cdd:COG3096 582 ELRQQLEQLRARIKELAArapawlaaQDALERLREQSGEALADSQEVTAAMQQLLEREREATVERDE------------- 648
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 397 qrvqqmaeqvhtLKEEKEHRERQVQELetslaalrsqmeeppppepPAGPSEAEEQLQGEVEQLHKEL------------ 464
Cdd:COG3096 649 ------------LAARKQALESQIERL-------------------SQPGGAEDPRLLALAERLGGVLlseiyddvtled 697
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 465 ----ERLTGQLR-AQVQDNESL--SHLNREQE--GRLLELEREAQRWSE---QAEERKQILESMQSDRT----------T 522
Cdd:COG3096 698 apyfSALYGPARhAIVVPDLSAvkEQLAGLEDcpEDLYLIEGDPDSFDDsvfDAEELEDAVVVKLSDRQwrysrfpevpL 777
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 523 ISRALSQNR--ELKEQLAELQNGFVRLTNENMEITSALQS-EQHVKKELARKLGELQErlgelketvelksQEAQGLQEQ 599
Cdd:COG3096 778 FGRAAREKRleELRAERDELAEQYAKASFDVQKLQRLHQAfSQFVGGHLAVAFAPDPE-------------AELAALRQR 844
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1676318910 600 RDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKqLLLQTQLMDQLQHEEvqgkmAAELARQELQEAQE 668
Cdd:COG3096 845 RSELERELAQHRAQEQQLRQQLDQLKEQLQLLNK-LLPQANLLADETLAD-----RLEELREELDAAQE 907
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
169-872 |
3.70e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 41.31 E-value: 3.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 169 EELKQQNQDTLDQLEKEKKDYQQK---LAKEQGSLREQLQVHIQtigiLVSEKAELQTALAHTQQAARQ-------KAGE 238
Cdd:pfam01576 11 EEELQKVKERQQKAESELKELEKKhqqLCEEKNALQEQLQAETE----LCAEAEEMRARLAARKQELEEilhelesRLEE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 239 SEDLASRLQSSR----QRVGELERTLST--VSTQQKQADRYNKDL---TKERDALKLELYKNSKSNE---------DLRQ 300
Cdd:pfam01576 87 EEERSQQLQNEKkkmqQHIQDLEEQLDEeeAARQKLQLEKVTTEAkikKLEEDILLLEDQNSKLSKErklleerisEFTS 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 301 QNSELEEKLRVLVAEKAAAQLGVEELQ---KKLEMSELLLQQFSSQSSAAGGNEQLQHAmEERAQLETHVSQLMESLKQL 377
Cdd:pfam01576 167 NLAEEEEKAKSLSKLKNKHEAMISDLEerlKKEEKGRQELEKAKRKLEGESTDLQEQIA-ELQAQIAELRAQLAKKEEEL 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 378 QVERDQYAENLKGESAMwQQRVQQMAEQVHTLKEEKEHR-------ERQVQELETSLAALRSQMeePPPPEPPAGPSEAE 450
Cdd:pfam01576 246 QAALARLEEETAQKNNA-LKKIRELEAQISELQEDLESEraarnkaEKQRRDLGEELEALKTEL--EDTLDTTAAQQELR 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 451 EQLQGEVEQLHKELERLTGQLRAQVQDnesLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQN 530
Cdd:pfam01576 323 SKREQEVTELKKALEEETRSHEAQLQE---MRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQA 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 531 RELKEQLAELQNGFVRltnenmEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQY 610
Cdd:pfam01576 400 KQDSEHKRKKLEGQLQ------ELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDT 473
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 611 AAAYQQHLAAYEQLTSEKEAIHKQlllQTQLMDQLQhEEVQGKMAAELARQELQEAQERLKATSQENQqlqaqlsllvlp 690
Cdd:pfam01576 474 QELLQEETRQKLNLSTRLRQLEDE---RNSLQEQLE-EEEEAKRNVERQLSTLQAQLSDMKKKLEEDA------------ 537
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 691 gEGDVDQEEEDEEVPQSSLAIPEDLDSREAMVAFFNAAIARAEEEQARLRVQLKEQKARCRSLSHlaapVQSKLEKEAVV 770
Cdd:pfam01576 538 -GTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEK----KQKKFDQMLAE 612
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 771 PRNVDDSASEESNQALHVAMEKlQSRFLEVMQEKVELKERVEELEHCCIQLSGETDtigeyiALYQNQRAVLKARHlEKE 850
Cdd:pfam01576 613 EKAISARYAEERDRAEAEAREK-ETRALSLARALEEALEAKEELERTNKQLRAEME------DLVSSKDDVGKNVH-ELE 684
|
730 740
....*....|....*....|..
gi 1676318910 851 EYISRLAQDKEEMKVKLLELQE 872
Cdd:pfam01576 685 RSKRALEQQVEEMKTQLEELED 706
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
105-319 |
4.23e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 4.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 105 TFSSTESLRQLSQQLNGLVSESTSYINGEGLTSSNMKELENRYQELAVALDSsyvTNKQLSSTIEELKQQNQDtLDQLEK 184
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAA---LARRIRALEQELAALEAE-LAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 185 EKKDYQQKLAKEQGSLREQLQ--------------VHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSR 250
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRalyrlgrqpplallLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1676318910 251 QRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAA 319
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
180-539 |
5.03e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 40.96 E-value: 5.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 180 DQLEKEKKDYQQKLAKEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERT 259
Cdd:pfam10174 358 ESFLNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQLAGLKERVKSLQTDSSNTDTA 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 260 LSTVSTQQKQADRYNKDLTKERDALKLELYKNSksnEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQK----------- 328
Cdd:pfam10174 438 LTTLEEALSEKERIIERLKEQREREDRERLEEL---ESLKKENKDLKEKVSALQPELTEKESSLIDLKEhasslassglk 514
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 329 ---KLEMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSqlmESLKQLQVERDQYAEnlkgESAMWQQRVQQMAEQ 405
Cdd:pfam10174 515 kdsKLKSLEIAVEQKKEECSKLENQLKKAHNAEEAVRTNPEIN---DRIRLLEQEVARYKE----ESGKAQAEVERLLGI 587
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 406 VHTLKEEKEHRERQVQELEtSLAALRSQMEEPPPPEPPAGPSEAEEQLQGEVEQLHKElerltgqlraqvQDNESLSHLN 485
Cdd:pfam10174 588 LREVENEKNDKDKKIAELE-SLTLRQMKEQNKKVANIKHGQQEMKKKGAQLLEEARRR------------EDNLADNSQQ 654
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 1676318910 486 REQEGRLLELEREAQrwseQAEERKQILESMQSDRTTISRALSQNR-ELKEQLAE 539
Cdd:pfam10174 655 LQLEELMGALEKTRQ----ELDATKARLSSTQQSLAEKDGHLTNLRaERRKQLEE 705
|
|
| COG4995 |
COG4995 |
Uncharacterized conserved protein, contains CHAT domain [Function unknown]; |
200-645 |
5.89e-03 |
|
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
Pssm-ID: 444019 [Multi-domain] Cd Length: 711 Bit Score: 40.72 E-value: 5.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 200 LREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTK 279
Cdd:COG4995 8 ALLAALLAALALALLALALLLLLAALAAAALLLLALLALLLALAAAAAAALAAAALALALLAAAALALLLLALALAALAL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 280 ERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEE 359
Cdd:COG4995 88 ALLAAALALALAAAALAALALLAALLALAAAAALLALLAALALLALLAALAAALAAAAAAALAAALAAAAAAAAAAALLA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 360 RAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPP 439
Cdd:COG4995 168 LALALAAAALALLALLLAALAAALAAAAAALALLLALLLLAALAAALAAALAALLLALLALAAALLALLLLALLALAAAA 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 440 PEPPAGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSD 519
Cdd:COG4995 248 AALAAAAAALLALAAALLLLAALAALAAAAAAAALAALALAAALALAAAALALALLLAAAAAAALAALALLLLAALLLLL 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 520 RTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQ 599
Cdd:COG4995 328 AALALLALLLLLAAAALLAAALAAALALAAALALALLAALLLLLAALLALLLEALLLLLLALLAALLLLAAALLALAAAQ 407
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 1676318910 600 RDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIH--KQLLLQTQLMDQL 645
Cdd:COG4995 408 LLRLLLAALALLLALAAYAAARLALLALIEYIIlpDRLYAFVQLYQLL 455
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
90-419 |
6.30e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 40.66 E-value: 6.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 90 SHDAGNCSNLMEETKTFSSteSLRQLSQqlngLVSESTSYINGEGLTSSNMKE--LENRYQELAVALDSSYVTNKQLSST 167
Cdd:PLN02939 60 SSNSKLQSNTDENGQLENT--SLRTVME----LPQKSTSSDDDHNRASMQRDEaiAAIDNEQQTNSKDGEQLSDFQLEDL 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 168 IEELK--QQNQDTLDQLEKEKKDYQQKLAKEqgslREQLQVHIQTIGILVSE-KAELQTAL---AHTQQAARQKAGESED 241
Cdd:PLN02939 134 VGMIQnaEKNILLLNQARLQALEDLEKILTE----KEALQGKINILEMRLSEtDARIKLAAqekIHVEILEEQLEKLRNE 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 242 LASRLQSSRQRVGELERTLSTVSTQqkqadryNKDLTKERDALKLELYKNSKSNED---LRQQNSELEEKLRVLVAEKAA 318
Cdd:PLN02939 210 LLIRGATEGLCVHSLSKELDVLKEE-------NMLLKDDIQFLKAELIEVAETEERvfkLEKERSLLDASLRELESKFIV 282
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 319 AQ--------LGVEELQKKLEMSELLLQQFSSQSSAA----GGNEQLQHAME--ERAQLETHVSQ--------LMESLKQ 376
Cdd:PLN02939 283 AQedvsklspLQYDCWWEKVENLQDLLDRATNQVEKAalvlDQNQDLRDKVDklEASLKEANVSKfssykvelLQQKLKL 362
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 1676318910 377 LQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQ 419
Cdd:PLN02939 363 LEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEESKKRSLE 405
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
277-433 |
6.82e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.14 E-value: 6.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 277 LTKERDALKLELyknsksnEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLQHA 356
Cdd:COG1579 22 LEHRLKELPAEL-------AELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEYEAL 94
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1676318910 357 MEERAQLETHVSQLMESLKQLQVERDQYAENLKGEsamwQQRVQQMAEQVHTLKEEkehRERQVQELETSLAALRSQ 433
Cdd:COG1579 95 QKEIESLKRRISDLEDEILELMERIEELEEELAEL----EAELAELEAELEEKKAE---LDEELAELEAELEELEAE 164
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
182-598 |
7.18e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 40.42 E-value: 7.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 182 LEKEKKDYQQKLAKEQGSLrEQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQrvgeLERTLS 261
Cdd:TIGR00606 506 LQNEKADLDRKLRKLDQEM-EQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQ----LEDWLH 580
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 262 TVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLrVLVAEKAAAQLGVEELQKKLEMSELLLQQFS 341
Cdd:TIGR00606 581 SKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKL-FDVCGSQDEESDLERLKEEIEKSSKQRAMLA 659
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 342 SQSS------------AAGGNEQLQHAMEERAQLETHVSQL----------MESLKQLQVERDQYAENLKGESAMWQQRV 399
Cdd:TIGR00606 660 GATAvysqfitqltdeNQSCCPVCQRVFQTEAELQEFISDLqsklrlapdkLKSTESELKKKEKRRDEMLGLAPGRQSII 739
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 400 QQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDne 479
Cdd:TIGR00606 740 DLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQG-- 817
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 480 slshlnreqegrlLELEREAQRWSEQAEERKQILESMQSdRTTISRALSQNRElkEQLAELQNGFVRLTNENMEITSALQ 559
Cdd:TIGR00606 818 -------------SDLDRTVQQVNQEKQEKQHELDTVVS-KIELNRKLIQDQQ--EQIQHLKSKTNELKSEKLQIGTNLQ 881
|
410 420 430
....*....|....*....|....*....|....*....
gi 1676318910 560 SEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQE 598
Cdd:TIGR00606 882 RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEK 920
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
497-676 |
7.44e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 7.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 497 REAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQLAELQngfvrltnenmeitsalqseqhvKKELARKLGELQ 576
Cdd:COG4913 238 ERAHEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALR-----------------------LWFAQRRLELLE 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 577 ERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQH-LAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMA 655
Cdd:COG4913 295 AELEELRAELARLEAELERLEARLDALREELDELEAQIRGNgGDRLEQLEREIERLERELEERERRRARLEALLAALGLP 374
|
170 180
....*....|....*....|.
gi 1676318910 656 AELARQELQEAQERLKATSQE 676
Cdd:COG4913 375 LPASAEEFAALRAEAAALLEA 395
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
137-609 |
9.46e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 39.82 E-value: 9.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 137 SSNMKELENRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLDQLEKEKKDYQQKLAKEQGSLREQLQVHIQTIGILVS 216
Cdd:pfam12128 250 FNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALED 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 217 -----EKAELQTALAHTQQA---ARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQK-QADRYNKDLTKERDALKLE 287
Cdd:pfam12128 330 qhgafLDADIETAAADQEQLpswQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNrDIAGIKDKLAKIREARDRQ 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 288 LyknSKSNEDLRQQNSELEEKLrvlvaEKAAAQLGVEELQKKLEMSELLLQQFSSQSSA------AGGNEQLQHAMEERA 361
Cdd:pfam12128 410 L---AVAEDDLQALESELREQL-----EAGKLEFNEEEYRLKSRLGELKLRLNQATATPelllqlENFDERIERAREEQE 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 362 QLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEK----EHRERQVQELETSLAAL------- 430
Cdd:pfam12128 482 AANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQAgtllHFLRKEAPDWEQSIGKVispellh 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 431 RSQMEEPPPPEPPAG----------------PSEA--EEQLQGEVEQLHKELErlTGQLRAQVQDnESLSHLNREQEGRL 492
Cdd:pfam12128 562 RTDLDPEVWDGSVGGelnlygvkldlkridvPEWAasEEELRERLDKAEEALQ--SAREKQAAAE-EQLVQANGELEKAS 638
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 493 LELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQlaELQNGFVRLTNENMEITSALQSEQHVKKEL-ARK 571
Cdd:pfam12128 639 REETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANE--RLNSLEAQLKQLDKKHQAWLEEQKEQKREArTEK 716
|
490 500 510
....*....|....*....|....*....|....*...
gi 1676318910 572 LGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQ 609
Cdd:pfam12128 717 QAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALET 754
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
148-611 |
9.58e-03 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 39.73 E-value: 9.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 148 QELAVALDSSYVTNKQLSSTIEELKQQnqdtLDQLEKEKKDYQQKLAKEQGSLREQLQVH--IQTIGILVSEKAELQTAL 225
Cdd:pfam07111 190 KQLAEAQKEAELLRKQLSKTQEELEAQ----VTLVESLRKYVGEQVPPEVHSQTWELERQelLDTMQHLQEDRADLQATV 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 226 ----AHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVstqqkqADRYNKDLTKERDALKLELYKNSKSNEDLRQQ 301
Cdd:pfam07111 266 ellqVRVQSLTHMLALQEEELTRKIQPSDSLEPEFPKKCRSL------LNRWREKVFALMVQLKAQDLEHRDSVKQLRGQ 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 302 NSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELllqqfssqsSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVER 381
Cdd:pfam07111 340 VAELQEQVTSQSQEQAILQRALQDKAAEVEVERM---------SAKGLQMELSRAQEARRRQQQQTASAEEQLKFVVNAM 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 382 DQYAENLKGESAMWQQRVQQMAEQVHTLKE--EKEHRERQVQELETSLAALRSQMEEPPppePPAGPSEAEEQLqgEVEQ 459
Cdd:pfam07111 411 SSTQIWLETTMTRVEQAVARIPSLSNRLSYavRKVHTIKGLMARKVALAQLRQESCPPP---PPAPPVDADLSL--ELEQ 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 460 LHKELERLTGQLRAQvqdneslSHLNREQEGRLLEL-EREAQRWSEQAEERKQILESMQSDRTTISRALSQNRE-LKEQL 537
Cdd:pfam07111 486 LREERNRLDAELQLS-------AHLIQQEVGRAREQgEAERQQLSEVAQQLEQELQRAQESLASVGQQLEVARQgQQEST 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 538 AELQNGFVRLTNENMEITSALQSE-QHVKKELARKLGELQERLGE-----LKETVELKSQEAQGLQE-QRDQCLSHLQQY 610
Cdd:pfam07111 559 EEAASLRQELTQQQEIYGQALQEKvAEVETRLREQLSDTKRRLNEarreqAKAVVSLRQIQHRATQEkERNQELRRLQDE 638
|
.
gi 1676318910 611 A 611
Cdd:pfam07111 639 A 639
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
137-549 |
9.96e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 39.66 E-value: 9.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 137 SSNMKELENRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLDQLEKEKKDYqqKLAKEQGSLREQLQVHIQTIGILVS 216
Cdd:PRK03918 309 LREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERH--ELYEEAKAKKEELERLKKRLTGLTP 386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 217 EKAELQTALAHTQQAARQKagESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKnsKSNE 296
Cdd:PRK03918 387 EKLEKELEELEKAKEEIEE--EISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYT--AELK 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 297 DLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGGN-EQLQHAMEERAQLETHVSQLMESLK 375
Cdd:PRK03918 463 RIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNlEELEKKAEEYEKLKEKLIKLKGEIK 542
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 376 QLQVERDQYAEnLKGESAMWQQRVQQMAEQVHTLKEEKEHR--------ERQVQELETS----LAALRSQMEEPPPPEPP 443
Cdd:PRK03918 543 SLKKELEKLEE-LKKKLAELEKKLDELEEELAELLKELEELgfesveelEERLKELEPFyneyLELKDAEKELEREEKEL 621
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676318910 444 AGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHlnREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTI 523
Cdd:PRK03918 622 KKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEY--EELREEYLELSRELAGLRAELEELEKRREEIKKTLEKL 699
|
410 420
....*....|....*....|....*.
gi 1676318910 524 SRALSQNRELKEQLAELQNGFVRLTN 549
Cdd:PRK03918 700 KEELEEREKAKKELEKLEKALERVEE 725
|
|
| |
