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Conserved domains on  [gi|122114551|ref|NP_001073645|]
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stem-loop binding protein 2 [Danio rerio]

Protein Classification

histone RNA hairpin-binding protein( domain architecture ID 10633649)

histone RNA hairpin-binding protein, also called histone stem-loop-binding protein (SLBP), binds the stem-loop structure of replication-dependent histone mRNAs and may be involved in histone pre-mRNA processing

CATH:  1.10.8.1120
Gene Ontology:  GO:0003729|GO:0051028|GO:0006398|GO:0071207
SCOP:  4007154

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SLBP_RNA_bind pfam15247
Histone RNA hairpin-binding protein RNA-binding domain; This family represents the RNA-binding ...
 132-198 1.80e-40

Histone RNA hairpin-binding protein RNA-binding domain; This family represents the RNA-binding domain of histone RNA hairpin-binding protein.


:

Pssm-ID: 464587  Cd Length: 70  Bit Score: 136.19  E-value: 1.80e-40
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 122114551  132 EAVLKRRQKQIQYGKNTCGYQNYVQQVPKRLRVPGIHPSTPNKYRKYSRRSWDMQVRLWRRALHAWD 198
Cdd:pfam15247   3 PRRLAQRQKQIDYGKNTIGYQRYIRAVPKEKRRKKDHPRTPDKYQNCSKRSWDGQIKKWRRQLHQWD 69
 
Name Accession Description Interval E-value
SLBP_RNA_bind pfam15247
Histone RNA hairpin-binding protein RNA-binding domain; This family represents the RNA-binding ...
 132-198 1.80e-40

Histone RNA hairpin-binding protein RNA-binding domain; This family represents the RNA-binding domain of histone RNA hairpin-binding protein.


Pssm-ID: 464587  Cd Length: 70  Bit Score: 136.19  E-value: 1.80e-40
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 122114551  132 EAVLKRRQKQIQYGKNTCGYQNYVQQVPKRLRVPGIHPSTPNKYRKYSRRSWDMQVRLWRRALHAWD 198
Cdd:pfam15247   3 PRRLAQRQKQIDYGKNTIGYQRYIRAVPKEKRRKKDHPRTPDKYQNCSKRSWDGQIKKWRRQLHQWD 69
 
Name Accession Description Interval E-value
SLBP_RNA_bind pfam15247
Histone RNA hairpin-binding protein RNA-binding domain; This family represents the RNA-binding ...
 132-198 1.80e-40

Histone RNA hairpin-binding protein RNA-binding domain; This family represents the RNA-binding domain of histone RNA hairpin-binding protein.


Pssm-ID: 464587  Cd Length: 70  Bit Score: 136.19  E-value: 1.80e-40
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 122114551  132 EAVLKRRQKQIQYGKNTCGYQNYVQQVPKRLRVPGIHPSTPNKYRKYSRRSWDMQVRLWRRALHAWD 198
Cdd:pfam15247   3 PRRLAQRQKQIDYGKNTIGYQRYIRAVPKEKRRKKDHPRTPDKYQNCSKRSWDGQIKKWRRQLHQWD 69
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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