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Conserved domains on  [gi|116004547|ref|NP_001070633|]
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sentrin-specific protease 8 [Danio rerio]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
XopD super family cl46072
Ulp1 family type III secretion system effector isopeptidase XopD;
86-173 1.36e-05

Ulp1 family type III secretion system effector isopeptidase XopD;


The actual alignment was detected with superfamily member NF041337:

Pssm-ID: 469234  Cd Length: 731  Bit Score: 45.17  E-value: 1.36e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116004547  86 VFLAVNDNSnqtaggSHWSLLLYRRDTSQFAHYDS----------QSGSNSLHARRIAAKLEAFLGAGAKVPFVEeqcps 155
Cdd:NF041337 582 VFLPINNPN------SHWSLLVVDRRTGDAFHYDSmvqpqpaaqaTNTQQYYLARMAARAMGLDATPVRGMPIAI----- 650
                         90
                 ....*....|....*...
gi 116004547 156 QQNSYDCGMYVICNAEAL 173
Cdd:NF041337 651 QRDGYSCGDHVLTGIEVL 668
 
Name Accession Description Interval E-value
XopD NF041337
Ulp1 family type III secretion system effector isopeptidase XopD;
86-173 1.36e-05

Ulp1 family type III secretion system effector isopeptidase XopD;


Pssm-ID: 469234  Cd Length: 731  Bit Score: 45.17  E-value: 1.36e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116004547  86 VFLAVNDNSnqtaggSHWSLLLYRRDTSQFAHYDS----------QSGSNSLHARRIAAKLEAFLGAGAKVPFVEeqcps 155
Cdd:NF041337 582 VFLPINNPN------SHWSLLVVDRRTGDAFHYDSmvqpqpaaqaTNTQQYYLARMAARAMGLDATPVRGMPIAI----- 650
                         90
                 ....*....|....*...
gi 116004547 156 QQNSYDCGMYVICNAEAL 173
Cdd:NF041337 651 QRDGYSCGDHVLTGIEVL 668
Peptidase_C48 pfam02902
Ulp1 protease family, C-terminal catalytic domain; This domain contains the catalytic triad ...
26-173 6.60e-04

Ulp1 protease family, C-terminal catalytic domain; This domain contains the catalytic triad Cys-His-Asn.


Pssm-ID: 397169  Cd Length: 202  Bit Score: 39.36  E-value: 6.60e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116004547   26 WLNDQVIGFAFEY-----------------FTTECFKSLSDKICFISPEVAQFIKYAS--CHEELAIFLE------PLSL 80
Cdd:pfam02902   2 WLNDTVIDFYLKLlahrlesedyknervhfLNSFFYSKLTSKVSFKWGKKKDFYNGVRrwTRKNKKWLFDvdiiyiPINW 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116004547   81 ASRRWVFLAVNdNSNQTAGgsHW-SLLLYRRDTSQ---FAHYDSQSGSNSLHARRIAAKLEAFLGagakvpFVEEQCPSQ 156
Cdd:pfam02902  82 DGKHWVLLIIN-LPKKTIT--ILdSLISLHTDKEYirpINAMLPYLMSEALKKEQDDPDLTPFEI------KRLTKVPQQ 152
                         170
                  ....*....|....*..
gi 116004547  157 QNSYDCGMYVICNAEAL 173
Cdd:pfam02902 153 PNSGDCGPYVLKFIELL 169
 
Name Accession Description Interval E-value
XopD NF041337
Ulp1 family type III secretion system effector isopeptidase XopD;
86-173 1.36e-05

Ulp1 family type III secretion system effector isopeptidase XopD;


Pssm-ID: 469234  Cd Length: 731  Bit Score: 45.17  E-value: 1.36e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116004547  86 VFLAVNDNSnqtaggSHWSLLLYRRDTSQFAHYDS----------QSGSNSLHARRIAAKLEAFLGAGAKVPFVEeqcps 155
Cdd:NF041337 582 VFLPINNPN------SHWSLLVVDRRTGDAFHYDSmvqpqpaaqaTNTQQYYLARMAARAMGLDATPVRGMPIAI----- 650
                         90
                 ....*....|....*...
gi 116004547 156 QQNSYDCGMYVICNAEAL 173
Cdd:NF041337 651 QRDGYSCGDHVLTGIEVL 668
Peptidase_C48 pfam02902
Ulp1 protease family, C-terminal catalytic domain; This domain contains the catalytic triad ...
26-173 6.60e-04

Ulp1 protease family, C-terminal catalytic domain; This domain contains the catalytic triad Cys-His-Asn.


Pssm-ID: 397169  Cd Length: 202  Bit Score: 39.36  E-value: 6.60e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116004547   26 WLNDQVIGFAFEY-----------------FTTECFKSLSDKICFISPEVAQFIKYAS--CHEELAIFLE------PLSL 80
Cdd:pfam02902   2 WLNDTVIDFYLKLlahrlesedyknervhfLNSFFYSKLTSKVSFKWGKKKDFYNGVRrwTRKNKKWLFDvdiiyiPINW 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116004547   81 ASRRWVFLAVNdNSNQTAGgsHW-SLLLYRRDTSQ---FAHYDSQSGSNSLHARRIAAKLEAFLGagakvpFVEEQCPSQ 156
Cdd:pfam02902  82 DGKHWVLLIIN-LPKKTIT--ILdSLISLHTDKEYirpINAMLPYLMSEALKKEQDDPDLTPFEI------KRLTKVPQQ 152
                         170
                  ....*....|....*..
gi 116004547  157 QNSYDCGMYVICNAEAL 173
Cdd:pfam02902 153 PNSGDCGPYVLKFIELL 169
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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