|
Name |
Accession |
Description |
Interval |
E-value |
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
11-296 |
1.24e-33 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 127.72 E-value: 1.24e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219277681 11 QPPEDGISSVKFSPNtSQFLLVSSWDTSVRLYDVPANSMRLKYQ-HTGAVLDCAFyDP--THAWSGGLDHQLKMHDLNTD 87
Cdd:COG2319 117 TGHTGAVRSVAFSPD-GKTLASGSADGTVRLWDLATGKLLRTLTgHSGAVTSVAF-SPdgKLLASGSDDGTVRLWDLATG 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219277681 88 QE--NLVGtHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPCNAGTFS-QPEKVYTLSVS--GDRLIVGTAGRRVLVW 162
Cdd:COG2319 195 KLlrTLTG-HTGAVRSVAFSPDGKLLASGSADGTVRLWDLATGKLLRTLTgHSGSVRSVAFSpdGRLLASGSADGTVRLW 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219277681 163 DLRNmgyvqQRRESSLKYQTRCIR--AF-PNKQGYVLSSIEGRVAVEYLDPSPEVQkkkyAFKCHrlkennieqIYPVNA 239
Cdd:COG2319 274 DLAT-----GELLRTLTGHSGGVNsvAFsPDGKLLASGSDDGTVRLWDLATGKLLR----TLTGH---------TGAVRS 335
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 219277681 240 ISFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASS 296
Cdd:COG2319 336 VAFSPDGKTLASGSDDGTVRLWDLATGELLRTLTGHTGAVTSVAFSPDGRTLASGSA 392
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
14-296 |
2.54e-32 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 121.67 E-value: 2.54e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219277681 14 EDGISSVKFSPNtSQFLLVSSWDTSVRLYDVPANSMRLKYQ-HTGAVLDCAFYDPTH-AWSGGLDHQLKMHDLNTDQEN- 90
Cdd:cd00200 9 TGGVTCVAFSPD-GKLLATGSGDGTIKVWDLETGELLRTLKgHTGPVRDVAASADGTyLASGSSDKTIRLWDLETGECVr 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219277681 91 -LVGtHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPCNAGTFSQPEK-VYTLSVSGDRLIVGTAG--RRVLVWDLRN 166
Cdd:cd00200 88 tLTG-HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDwVNSVAFSPDGTFVASSSqdGTIKLWDLRT 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219277681 167 MGYVQQRR--ESSLkyqtRCIRAFPNKQGYVLSSIEGRVAVeyLDPSpeVQKKKYAFKCHRlkennieqiYPVNAISFHN 244
Cdd:cd00200 167 GKCVATLTghTGEV----NSVAFSPDGEKLLSSSSDGTIKL--WDLS--TGKCLGTLRGHE---------NGVNSVAFSP 229
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 219277681 245 IHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASS 296
Cdd:cd00200 230 DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSA 281
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
95-124 |
3.32e-06 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 43.46 E-value: 3.32e-06
10 20 30
....*....|....*....|....*....|
gi 219277681 95 HDAPIRCVEYCPEVNVMVTGSWDQTVKLWD 124
Cdd:smart00320 11 HTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
95-124 |
8.49e-06 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 41.95 E-value: 8.49e-06
10 20 30
....*....|....*....|....*....|
gi 219277681 95 HDAPIRCVEYCPEVNVMVTGSWDQTVKLWD 124
Cdd:pfam00400 10 HTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
11-296 |
1.24e-33 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 127.72 E-value: 1.24e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219277681 11 QPPEDGISSVKFSPNtSQFLLVSSWDTSVRLYDVPANSMRLKYQ-HTGAVLDCAFyDP--THAWSGGLDHQLKMHDLNTD 87
Cdd:COG2319 117 TGHTGAVRSVAFSPD-GKTLASGSADGTVRLWDLATGKLLRTLTgHSGAVTSVAF-SPdgKLLASGSDDGTVRLWDLATG 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219277681 88 QE--NLVGtHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPCNAGTFS-QPEKVYTLSVS--GDRLIVGTAGRRVLVW 162
Cdd:COG2319 195 KLlrTLTG-HTGAVRSVAFSPDGKLLASGSADGTVRLWDLATGKLLRTLTgHSGSVRSVAFSpdGRLLASGSADGTVRLW 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219277681 163 DLRNmgyvqQRRESSLKYQTRCIR--AF-PNKQGYVLSSIEGRVAVEYLDPSPEVQkkkyAFKCHrlkennieqIYPVNA 239
Cdd:COG2319 274 DLAT-----GELLRTLTGHSGGVNsvAFsPDGKLLASGSDDGTVRLWDLATGKLLR----TLTGH---------TGAVRS 335
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 219277681 240 ISFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASS 296
Cdd:COG2319 336 VAFSPDGKTLASGSDDGTVRLWDLATGELLRTLTGHTGAVTSVAFSPDGRTLASGSA 392
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
14-296 |
2.54e-32 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 121.67 E-value: 2.54e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219277681 14 EDGISSVKFSPNtSQFLLVSSWDTSVRLYDVPANSMRLKYQ-HTGAVLDCAFYDPTH-AWSGGLDHQLKMHDLNTDQEN- 90
Cdd:cd00200 9 TGGVTCVAFSPD-GKLLATGSGDGTIKVWDLETGELLRTLKgHTGPVRDVAASADGTyLASGSSDKTIRLWDLETGECVr 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219277681 91 -LVGtHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPCNAGTFSQPEK-VYTLSVSGDRLIVGTAG--RRVLVWDLRN 166
Cdd:cd00200 88 tLTG-HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDwVNSVAFSPDGTFVASSSqdGTIKLWDLRT 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219277681 167 MGYVQQRR--ESSLkyqtRCIRAFPNKQGYVLSSIEGRVAVeyLDPSpeVQKKKYAFKCHRlkennieqiYPVNAISFHN 244
Cdd:cd00200 167 GKCVATLTghTGEV----NSVAFSPDGEKLLSSSSDGTIKL--WDLS--TGKCLGTLRGHE---------NGVNSVAFSP 229
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 219277681 245 IHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASS 296
Cdd:cd00200 230 DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSA 281
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
11-296 |
1.24e-31 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 122.33 E-value: 1.24e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219277681 11 QPPEDGISSVKFSPNTsQFLLVSSWDTSVRLYDVPANSMRLKYQ-HTGAVLDCAFyDPTHAW--SGGLDHQLKMHDLNTD 87
Cdd:COG2319 75 LGHTAAVLSVAFSPDG-RLLASASADGTVRLWDLATGLLLRTLTgHTGAVRSVAF-SPDGKTlaSGSADGTVRLWDLATG 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219277681 88 QE--NLVGtHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPCNAGTFSQPEK-VYTLSVS--GDRLIVGTAGRRVLVW 162
Cdd:COG2319 153 KLlrTLTG-HSGAVTSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGaVRSVAFSpdGKLLASGSADGTVRLW 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219277681 163 DLRNmgyvqQRRESSLKYQTRCIR--AF-PNKQGYVLSSIEGRVAVEYLDPSPEVqkkkyafkcHRLKENNieqiYPVNA 239
Cdd:COG2319 232 DLAT-----GKLLRTLTGHSGSVRsvAFsPDGRLLASGSADGTVRLWDLATGELL---------RTLTGHS----GGVNS 293
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 219277681 240 ISFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASS 296
Cdd:COG2319 294 VAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGKTLASGSD 350
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
13-166 |
2.20e-22 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 96.52 E-value: 2.20e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219277681 13 PEDGISSVKFSPNtSQFLLVSSWDTSVRLYDVPANS-MRLKYQHTGAVLDCAF-YDPTHAWSGGLDHQLKMHDLNTDQE- 89
Cdd:COG2319 245 HSGSVRSVAFSPD-GRLLASGSADGTVRLWDLATGElLRTLTGHSGGVNSVAFsPDGKLLASGSDDGTVRLWDLATGKLl 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219277681 90 -NLVGtHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPCNAGTFSQPEK-VYTLSVS--GDRLIVGTAGRRVLVWDLR 165
Cdd:COG2319 324 rTLTG-HTGAVRSVAFSPDGKTLASGSDDGTVRLWDLATGELLRTLTGHTGaVTSVAFSpdGRTLASGSADGTVRLWDLA 402
|
.
gi 219277681 166 N 166
Cdd:COG2319 403 T 403
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
17-296 |
2.78e-22 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 96.13 E-value: 2.78e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219277681 17 ISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAF-YDPTHAWSGGLDHQLKMHDLNTDQENLVGT- 94
Cdd:COG2319 39 VASLAASPDGARLAAGAGDLTLLLLDAAAGALLATLLGHTAAVLSVAFsPDGRLLASASADGTVRLWDLATGLLLRTLTg 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219277681 95 HDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPCNAGTFS-QPEKVYTLSVS--GDRLIVGTAGRRVLVWDLRNmgyvq 171
Cdd:COG2319 119 HTGAVRSVAFSPDGKTLASGSADGTVRLWDLATGKLLRTLTgHSGAVTSVAFSpdGKLLASGSDDGTVRLWDLAT----- 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219277681 172 qrresslkyqTRCIRAFPNKQGYVLSsiegrVAVeyldpSPEvqkkkyafkchrlkennieqiypvnaisfhniHNTFAT 251
Cdd:COG2319 194 ----------GKLLRTLTGHTGAVRS-----VAF-----SPD--------------------------------GKLLAS 221
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 219277681 252 GGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASS 296
Cdd:COG2319 222 GSADGTVRLWDLATGKLLRTLTGHSGSVRSVAFSPDGRLLASGSA 266
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
22-296 |
5.19e-16 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 78.03 E-value: 5.19e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219277681 22 FSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAFYDP--THAWSGGLDHQLKMHDLNTDQENLVGTHDAPI 99
Cdd:COG2319 2 LSADGAALAAASADLALALLAAALGALLLLLLGLAAAVASLAASPDgaRLAAGAGDLTLLLLDAAAGALLATLLGHTAAV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219277681 100 RCVEYCPEVNVMVTGSWDQTVKLWDPRTPCNAGTFS-QPEKVYTLSVS--GDRLIVGTAGRRVLVWDLRNmgyvqqrres 176
Cdd:COG2319 82 LSVAFSPDGRLLASASADGTVRLWDLATGLLLRTLTgHTGAVRSVAFSpdGKTLASGSADGTVRLWDLAT---------- 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219277681 177 slkyqTRCIRAFPNKQGyvlssiegrvaveyldpspevqkkkyafkchrlkennieqiyPVNAISFHNIHNTFATGGSDG 256
Cdd:COG2319 152 -----GKLLRTLTGHSG------------------------------------------AVTSVAFSPDGKLLASGSDDG 184
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 219277681 257 FVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASS 296
Cdd:COG2319 185 TVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGKLLASGSA 224
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
14-124 |
1.43e-14 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 72.75 E-value: 1.43e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219277681 14 EDGISSVKFSPNTSQFLLVSSwDTSVRLYDVpaNSMRLKYQ---HTGAVLDCAFyDPTHAW--SGGLDHQLKMHDLNTDQ 88
Cdd:cd00200 177 TGEVNSVAFSPDGEKLLSSSS-DGTIKLWDL--STGKCLGTlrgHENGVNSVAF-SPDGYLlaSGSEDGTIRVWDLRTGE 252
|
90 100 110
....*....|....*....|....*....|....*..
gi 219277681 89 ENLVGT-HDAPIRCVEYCPEVNVMVTGSWDQTVKLWD 124
Cdd:cd00200 253 CVQTLSgHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
95-296 |
1.56e-14 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 72.75 E-value: 1.56e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219277681 95 HDAPIRCVEYCPEVNVMVTGSWDQTVKLWD------PRTPCNAgtfSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNmG 168
Cdd:cd00200 8 HTGGVTCVAFSPDGKLLATGSGDGTIKVWDletgelLRTLKGH---TGPVRDVAASADGTYLASGSSDKTIRLWDLET-G 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219277681 169 YVQQRRESSLKYqTRCIRAFPNKQgYVLSSIE-GRVAVEYLDPSpevqKKKYAFKCHRlkennieqiYPVNAISFHnIHN 247
Cdd:cd00200 84 ECVRTLTGHTSY-VSSVAFSPDGR-ILSSSSRdKTIKVWDVETG----KCLTTLRGHT---------DWVNSVAFS-PDG 147
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 219277681 248 TFATGGS-DGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASS 296
Cdd:cd00200 148 TFVASSSqDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS 197
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
95-124 |
3.32e-06 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 43.46 E-value: 3.32e-06
10 20 30
....*....|....*....|....*....|
gi 219277681 95 HDAPIRCVEYCPEVNVMVTGSWDQTVKLWD 124
Cdd:smart00320 11 HTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
95-124 |
8.49e-06 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 41.95 E-value: 8.49e-06
10 20 30
....*....|....*....|....*....|
gi 219277681 95 HDAPIRCVEYCPEVNVMVTGSWDQTVKLWD 124
Cdd:pfam00400 10 HTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
236-262 |
3.11e-04 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 37.68 E-value: 3.11e-04
10 20
....*....|....*....|....*..
gi 219277681 236 PVNAISFHNIHNTFATGGSDGFVNIWD 262
Cdd:smart00320 14 PVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
14-43 |
2.95e-03 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 35.01 E-value: 2.95e-03
10 20 30
....*....|....*....|....*....|
gi 219277681 14 EDGISSVKFSPNtSQFLLVSSWDTSVRLYD 43
Cdd:pfam00400 11 TGSVTSLAFSPD-GKLLASGSDDGTVKVWD 39
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
236-262 |
3.07e-03 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 35.01 E-value: 3.07e-03
10 20
....*....|....*....|....*..
gi 219277681 236 PVNAISFHNIHNTFATGGSDGFVNIWD 262
Cdd:pfam00400 13 SVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
14-43 |
9.13e-03 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 33.44 E-value: 9.13e-03
10 20 30
....*....|....*....|....*....|
gi 219277681 14 EDGISSVKFSPNtSQFLLVSSWDTSVRLYD 43
Cdd:smart00320 12 TGPVTSVAFSPD-GKYLASGSDDGTIKLWD 40
|
|
|