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Conserved domains on  [gi|115532866|ref|NP_001040953|]
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RSD-2 domain-containing protein [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RSD-2 pfam07547
RSD-2 N-terminal domain; This domain is found in three copies in the N-terminus of the C. ...
 91-171 4.04e-28

RSD-2 N-terminal domain; This domain is found in three copies in the N-terminus of the C. elegans RSD-2 protein. RSD-2 (RNAi spreading defective) is involved in systemic RNAi. Mutations in the rsd-2 gene do not effect somatic genes but only germline expressed genes.


:

Pssm-ID: 400093  Cd Length: 83  Bit Score: 108.55  E-value: 4.04e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115532866    91 CSSIETHITYPQSVAFADTFGKVNVAA--ESMERGVTYRVELAINIIDSEANNVPLFKISDIGEKLTGEENEAFLRKLND 168
Cdd:pfam07547    1 FSSNPNHLTYNRKVAFADWYGLVDISDvkESMERGTVYKTEITVNDLDYEDNGNPLFKVSPLKGKIDPDDSEEFLQKMYE 80


                   ...
gi 115532866   169 FEE 171
Cdd:pfam07547   81 FEE 83
RSD-2 pfam07547
RSD-2 N-terminal domain; This domain is found in three copies in the N-terminus of the C. ...
 363-443 8.15e-27

RSD-2 N-terminal domain; This domain is found in three copies in the N-terminus of the C. elegans RSD-2 protein. RSD-2 (RNAi spreading defective) is involved in systemic RNAi. Mutations in the rsd-2 gene do not effect somatic genes but only germline expressed genes.


:

Pssm-ID: 400093  Cd Length: 83  Bit Score: 104.69  E-value: 8.15e-27
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115532866   363 FSSNPKHKSYNKEVGVSDRYGFVEIPRITGDFEFGTVYSTQITMV--QYGDPLKACFKaVAPLKRQFIDDLD-HYLQVMG 439
Cdd:pfam07547    1 FSSNPNHLTYNRKVAFADWYGLVDISDVKESMERGTVYKTEITVNdlDYEDNGNPLFK-VSPLKGKIDPDDSeEFLQKMY 79


                   ....
gi 115532866   440 KYED 443
Cdd:pfam07547   80 EFEE 83
AHD pfam17793
ANC1 homology domain (AHD); This entry corresponds to the ANC1 homology domain (AHD) found in ...
 771-830 1.31e-08

ANC1 homology domain (AHD); This entry corresponds to the ANC1 homology domain (AHD) found in AF-9.


:

Pssm-ID: 436050  Cd Length: 61  Bit Score: 52.16  E-value: 1.31e-08
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 115532866   771 YIFMYRPIEVHKATHYAPFEITQVVEILntENHGRVDRSefSSLFTFDLCNVDQRYVERL 830
Cdd:pfam17793    1 YLEELLELQKKIMSLKDREVLQRVVDII--EETGNFEIT--NTTFDFDLCSLDRSTIKKL 56
 
Name Accession Description Interval E-value
RSD-2 pfam07547
RSD-2 N-terminal domain; This domain is found in three copies in the N-terminus of the C. ...
 91-171 4.04e-28

RSD-2 N-terminal domain; This domain is found in three copies in the N-terminus of the C. elegans RSD-2 protein. RSD-2 (RNAi spreading defective) is involved in systemic RNAi. Mutations in the rsd-2 gene do not effect somatic genes but only germline expressed genes.


Pssm-ID: 400093  Cd Length: 83  Bit Score: 108.55  E-value: 4.04e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115532866    91 CSSIETHITYPQSVAFADTFGKVNVAA--ESMERGVTYRVELAINIIDSEANNVPLFKISDIGEKLTGEENEAFLRKLND 168
Cdd:pfam07547    1 FSSNPNHLTYNRKVAFADWYGLVDISDvkESMERGTVYKTEITVNDLDYEDNGNPLFKVSPLKGKIDPDDSEEFLQKMYE 80


                   ...
gi 115532866   169 FEE 171
Cdd:pfam07547   81 FEE 83
RSD-2 pfam07547
RSD-2 N-terminal domain; This domain is found in three copies in the N-terminus of the C. ...
 363-443 8.15e-27

RSD-2 N-terminal domain; This domain is found in three copies in the N-terminus of the C. elegans RSD-2 protein. RSD-2 (RNAi spreading defective) is involved in systemic RNAi. Mutations in the rsd-2 gene do not effect somatic genes but only germline expressed genes.


Pssm-ID: 400093  Cd Length: 83  Bit Score: 104.69  E-value: 8.15e-27
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115532866   363 FSSNPKHKSYNKEVGVSDRYGFVEIPRITGDFEFGTVYSTQITMV--QYGDPLKACFKaVAPLKRQFIDDLD-HYLQVMG 439
Cdd:pfam07547    1 FSSNPNHLTYNRKVAFADWYGLVDISDVKESMERGTVYKTEITVNdlDYEDNGNPLFK-VSPLKGKIDPDDSeEFLQKMY 79


                   ....
gi 115532866   440 KYED 443
Cdd:pfam07547   80 EFEE 83
AHD pfam17793
ANC1 homology domain (AHD); This entry corresponds to the ANC1 homology domain (AHD) found in ...
 771-830 1.31e-08

ANC1 homology domain (AHD); This entry corresponds to the ANC1 homology domain (AHD) found in AF-9.


Pssm-ID: 436050  Cd Length: 61  Bit Score: 52.16  E-value: 1.31e-08
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 115532866   771 YIFMYRPIEVHKATHYAPFEITQVVEILntENHGRVDRSefSSLFTFDLCNVDQRYVERL 830
Cdd:pfam17793    1 YLEELLELQKKIMSLKDREVLQRVVDII--EETGNFEIT--NTTFDFDLCSLDRSTIKKL 56
 
Name Accession Description Interval E-value
RSD-2 pfam07547
RSD-2 N-terminal domain; This domain is found in three copies in the N-terminus of the C. ...
 91-171 4.04e-28

RSD-2 N-terminal domain; This domain is found in three copies in the N-terminus of the C. elegans RSD-2 protein. RSD-2 (RNAi spreading defective) is involved in systemic RNAi. Mutations in the rsd-2 gene do not effect somatic genes but only germline expressed genes.


Pssm-ID: 400093  Cd Length: 83  Bit Score: 108.55  E-value: 4.04e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115532866    91 CSSIETHITYPQSVAFADTFGKVNVAA--ESMERGVTYRVELAINIIDSEANNVPLFKISDIGEKLTGEENEAFLRKLND 168
Cdd:pfam07547    1 FSSNPNHLTYNRKVAFADWYGLVDISDvkESMERGTVYKTEITVNDLDYEDNGNPLFKVSPLKGKIDPDDSEEFLQKMYE 80


                   ...
gi 115532866   169 FEE 171
Cdd:pfam07547   81 FEE 83
RSD-2 pfam07547
RSD-2 N-terminal domain; This domain is found in three copies in the N-terminus of the C. ...
 363-443 8.15e-27

RSD-2 N-terminal domain; This domain is found in three copies in the N-terminus of the C. elegans RSD-2 protein. RSD-2 (RNAi spreading defective) is involved in systemic RNAi. Mutations in the rsd-2 gene do not effect somatic genes but only germline expressed genes.


Pssm-ID: 400093  Cd Length: 83  Bit Score: 104.69  E-value: 8.15e-27
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115532866   363 FSSNPKHKSYNKEVGVSDRYGFVEIPRITGDFEFGTVYSTQITMV--QYGDPLKACFKaVAPLKRQFIDDLD-HYLQVMG 439
Cdd:pfam07547    1 FSSNPNHLTYNRKVAFADWYGLVDISDVKESMERGTVYKTEITVNdlDYEDNGNPLFK-VSPLKGKIDPDDSeEFLQKMY 79


                   ....
gi 115532866   440 KYED 443
Cdd:pfam07547   80 EFEE 83
AHD pfam17793
ANC1 homology domain (AHD); This entry corresponds to the ANC1 homology domain (AHD) found in ...
 771-830 1.31e-08

ANC1 homology domain (AHD); This entry corresponds to the ANC1 homology domain (AHD) found in AF-9.


Pssm-ID: 436050  Cd Length: 61  Bit Score: 52.16  E-value: 1.31e-08
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 115532866   771 YIFMYRPIEVHKATHYAPFEITQVVEILntENHGRVDRSefSSLFTFDLCNVDQRYVERL 830
Cdd:pfam17793    1 YLEELLELQKKIMSLKDREVLQRVVDII--EETGNFEIT--NTTFDFDLCSLDRSTIKKL 56
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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