NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|116007496|ref|NP_001036444|]
View 

adherens junction protein p120 [Drosophila melanogaster]

Protein Classification

armadillo/beta-catenin-like repeat-containing protein( domain architecture ID 11997871)

armadillo/beta-catenin-like repeat-containing protein similar to splicing regulator ARVCF, an armadillo repeat protein deleted in velo-cardio-facial syndrome

CATH:  1.25.10.10
Gene Ontology:  GO:0098609|GO:0005515
PubMed:  12946625|9770300|9298899|20688255
SCOP:  3000116

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 256-295 6.37e-10

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


:

Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 54.77  E-value: 6.37e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 116007496  256 DDPNKQRTRSLGGIPPLVRLLSYDSPEIHKNACGALRNLS 295
Cdd:pfam00514   1 SPENKQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNLA 40
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 560-597 8.01e-07

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


:

Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 46.27  E-value: 8.01e-07
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 116007496   560 DIRATVRKEKGLPILVELLRMEVDRVVCAVATALRNLA 597
Cdd:smart00185   3 ENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 300-341 6.29e-06

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


:

Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 43.57  E-value: 6.29e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 116007496   300 NDENKRGIKNAGGIAALVHLLcRSQETEVKELVTGVLWNMSS 341
Cdd:smart00185   1 DDENKQAVVDAGGLPALVELL-KSEDEEVVKEAAWALSNLSS 41
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 516-552 2.14e-03

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


:

Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 36.28  E-value: 2.14e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 116007496  516 EQLWQPEVVQYYLSLLQScSNPETLEAAAGAIQNLSA 552
Cdd:pfam00514   6 QAVIEAGAVPPLVRLLSS-PDEEVQEEAAWALSNLAA 41
 
Name Accession Description Interval E-value
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 256-295 6.37e-10

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 54.77  E-value: 6.37e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 116007496  256 DDPNKQRTRSLGGIPPLVRLLSYDSPEIHKNACGALRNLS 295
Cdd:pfam00514   1 SPENKQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNLA 40
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 256-296 1.66e-09

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 53.59  E-value: 1.66e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 116007496   256 DDPNKQRTRSLGGIPPLVRLLSYDSPEIHKNACGALRNLSY 296
Cdd:smart00185   1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 560-597 8.01e-07

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 46.27  E-value: 8.01e-07
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 116007496   560 DIRATVRKEKGLPILVELLRMEVDRVVCAVATALRNLA 597
Cdd:smart00185   3 ENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 300-341 6.29e-06

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 43.57  E-value: 6.29e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 116007496   300 NDENKRGIKNAGGIAALVHLLcRSQETEVKELVTGVLWNMSS 341
Cdd:smart00185   1 DDENKQAVVDAGGLPALVELL-KSEDEEVVKEAAWALSNLSS 41
PLN03200 PLN03200
cellulose synthase-interactive protein; Provisional
 231-344 6.52e-06

cellulose synthase-interactive protein; Provisional


Pssm-ID: 215629 [Multi-domain]  Cd Length: 2102  Bit Score: 50.10  E-value: 6.52e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007496  231 ISFLSNPSSAIKANAAAYLQHLCYMDDpnkQRTRSL--GGIPPLVRLLSYDSPEIHKNACGALRNLSYGRQNDEnkRGIK 308
Cdd:PLN03200   64 VSLLRSGTLGAKVNAAAVLGVLCKEED---LRVKVLlgGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDH--VGSK 138

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 116007496  309 ---NAGGIAALVHLL--CRSQETEVKELVTGVLWNMSSCED 344
Cdd:PLN03200  139 ifsTEGVVPSLWDQLqpGNKQDKVVEGLLTGALRNLCGSTD 179
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 300-341 6.92e-05

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 40.52  E-value: 6.92e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 116007496  300 NDENKRGIKNAGGIAALVHLLcRSQETEVKELVTGVLWNMSS 341
Cdd:pfam00514   1 SPENKQAVIEAGAVPPLVRLL-SSPDEEVQEEAAWALSNLAA 41
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 560-597 1.05e-04

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 40.13  E-value: 1.05e-04
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 116007496  560 DIRATVRKEKGLPILVELLRMEVDRVVCAVATALRNLA 597
Cdd:pfam00514   3 ENKQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNLA 40
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 516-552 2.14e-03

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 36.28  E-value: 2.14e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 116007496  516 EQLWQPEVVQYYLSLLQScSNPETLEAAAGAIQNLSA 552
Cdd:pfam00514   6 QAVIEAGAVPPLVRLLSS-PDEEVQEEAAWALSNLAA 41
SRP1 COG5064
Karyopherin (importin) alpha [Intracellular trafficking and secretion];
227-320 6.79e-03

Karyopherin (importin) alpha [Intracellular trafficking and secretion];


Pssm-ID: 227396 [Multi-domain]  Cd Length: 526  Bit Score: 39.87  E-value: 6.79e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007496 227 LSEVISFLSNPSSAIKANA--------AAYLQHLCYMDDPNKqrtrslggIPPLVRLLSYDSPEIHKNACGALRNLSYG- 297
Cdd:COG5064  329 LKAFRSLLSSPKENIRKEAcwtisnitAGNTEQIQAVIDANL--------IPPLIHLLSSAEYKIKKEACWAISNATSGg 400

                         90       100
                 ....*....|....*....|....
gi 116007496 298 -RQNDENKRGIKNaGGIAALVHLL 320
Cdd:COG5064  401 lNRPDIIRYLVSQ-GFIKPLCDLL 423
 
Name Accession Description Interval E-value
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 256-295 6.37e-10

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 54.77  E-value: 6.37e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 116007496  256 DDPNKQRTRSLGGIPPLVRLLSYDSPEIHKNACGALRNLS 295
Cdd:pfam00514   1 SPENKQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNLA 40
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 256-296 1.66e-09

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 53.59  E-value: 1.66e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 116007496   256 DDPNKQRTRSLGGIPPLVRLLSYDSPEIHKNACGALRNLSY 296
Cdd:smart00185   1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 560-597 8.01e-07

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 46.27  E-value: 8.01e-07
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 116007496   560 DIRATVRKEKGLPILVELLRMEVDRVVCAVATALRNLA 597
Cdd:smart00185   3 ENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 300-341 6.29e-06

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 43.57  E-value: 6.29e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 116007496   300 NDENKRGIKNAGGIAALVHLLcRSQETEVKELVTGVLWNMSS 341
Cdd:smart00185   1 DDENKQAVVDAGGLPALVELL-KSEDEEVVKEAAWALSNLSS 41
PLN03200 PLN03200
cellulose synthase-interactive protein; Provisional
 231-344 6.52e-06

cellulose synthase-interactive protein; Provisional


Pssm-ID: 215629 [Multi-domain]  Cd Length: 2102  Bit Score: 50.10  E-value: 6.52e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007496  231 ISFLSNPSSAIKANAAAYLQHLCYMDDpnkQRTRSL--GGIPPLVRLLSYDSPEIHKNACGALRNLSYGRQNDEnkRGIK 308
Cdd:PLN03200   64 VSLLRSGTLGAKVNAAAVLGVLCKEED---LRVKVLlgGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDH--VGSK 138

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 116007496  309 ---NAGGIAALVHLL--CRSQETEVKELVTGVLWNMSSCED 344
Cdd:PLN03200  139 ifsTEGVVPSLWDQLqpGNKQDKVVEGLLTGALRNLCGSTD 179
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 300-341 6.92e-05

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 40.52  E-value: 6.92e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 116007496  300 NDENKRGIKNAGGIAALVHLLcRSQETEVKELVTGVLWNMSS 341
Cdd:pfam00514   1 SPENKQAVIEAGAVPPLVRLL-SSPDEEVQEEAAWALSNLAA 41
PLN03200 PLN03200
cellulose synthase-interactive protein; Provisional
 231-331 9.09e-05

cellulose synthase-interactive protein; Provisional


Pssm-ID: 215629 [Multi-domain]  Cd Length: 2102  Bit Score: 46.25  E-value: 9.09e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007496  231 ISFLSNPSSAIKANAAAYLQHLCYMDDPNKQRTRSLGGIPPLVRLLSYDSPEIHKNACGALRNLSygRQNDENKRGIKNA 310
Cdd:PLN03200  452 ISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLC--CHSEDIRACVESA 529

                          90       100
                  ....*....|....*....|....*
gi 116007496  311 GGIAALVHLL----CRSQETEVKEL 331
Cdd:PLN03200  530 GAVPALLWLLknggPKGQEIAAKTL 554
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 560-597 1.05e-04

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 40.13  E-value: 1.05e-04
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 116007496  560 DIRATVRKEKGLPILVELLRMEVDRVVCAVATALRNLA 597
Cdd:pfam00514   3 ENKQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNLA 40
PLN03200 PLN03200
cellulose synthase-interactive protein; Provisional
 230-317 7.69e-04

cellulose synthase-interactive protein; Provisional


Pssm-ID: 215629 [Multi-domain]  Cd Length: 2102  Bit Score: 43.17  E-value: 7.69e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007496  230 VISFLSNPSSAIKANAAAYLQHLCYMDDPNKQRTRSLGGIPPLVRLL-SYDSPEIHKNACGALRNLSygRQNDENKRGIK 308
Cdd:PLN03200  194 LVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLgQGNEVSVRAEAAGALEALS--SQSKEAKQAIA 271


                  ....*....
gi 116007496  309 NAGGIAALV 317
Cdd:PLN03200  272 DAGGIPALI 280
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 516-552 2.14e-03

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 36.28  E-value: 2.14e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 116007496  516 EQLWQPEVVQYYLSLLQScSNPETLEAAAGAIQNLSA 552
Cdd:pfam00514   6 QAVIEAGAVPPLVRLLSS-PDEEVQEEAAWALSNLAA 41
PLN03200 PLN03200
cellulose synthase-interactive protein; Provisional
 231-316 2.50e-03

cellulose synthase-interactive protein; Provisional


Pssm-ID: 215629 [Multi-domain]  Cd Length: 2102  Bit Score: 41.63  E-value: 2.50e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007496  231 ISFLSNPSSAIKANAAAYLQHLCYMDDPNKQRTRSLgGIPPLVRLLSYDSPEIHKNACGALRNLSYGRQNDenkrgIKNA 310
Cdd:PLN03200 1534 IPLLESPSQAVQQLAAELLSHLLAEEHFQQDITTQN-AVVPLVRLAGIGILSLQQRAVKALESISLSWPKA-----VADA 1607


                  ....*.
gi 116007496  311 GGIAAL 316
Cdd:PLN03200 1608 GGIFEL 1613
PLN03200 PLN03200
cellulose synthase-interactive protein; Provisional
 249-351 4.83e-03

cellulose synthase-interactive protein; Provisional


Pssm-ID: 215629 [Multi-domain]  Cd Length: 2102  Bit Score: 40.47  E-value: 4.83e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007496  249 LQHLCYMDDPNKQRTRSLGGIPPLVRLLSYDSPEIHKNACGALRNLSygRQNDENKRGIKNAGGIAALVHLLCRSQETEV 328
Cdd:PLN03200  171 LRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLM--MAFESSISKVLDAGAVKQLLKLLGQGNEVSV 248

                          90       100
                  ....*....|....*....|....
gi 116007496  329 KELVTGVLWNMSS-CEDLKRSIID 351
Cdd:PLN03200  249 RAEAAGALEALSSqSKEAKQAIAD 272
SRP1 COG5064
Karyopherin (importin) alpha [Intracellular trafficking and secretion];
227-320 6.79e-03

Karyopherin (importin) alpha [Intracellular trafficking and secretion];


Pssm-ID: 227396 [Multi-domain]  Cd Length: 526  Bit Score: 39.87  E-value: 6.79e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007496 227 LSEVISFLSNPSSAIKANA--------AAYLQHLCYMDDPNKqrtrslggIPPLVRLLSYDSPEIHKNACGALRNLSYG- 297
Cdd:COG5064  329 LKAFRSLLSSPKENIRKEAcwtisnitAGNTEQIQAVIDANL--------IPPLIHLLSSAEYKIKKEACWAISNATSGg 400

                         90       100
                 ....*....|....*....|....
gi 116007496 298 -RQNDENKRGIKNaGGIAALVHLL 320
Cdd:COG5064  401 lNRPDIIRYLVSQ-GFIKPLCDLL 423
SRP1 COG5064
Karyopherin (importin) alpha [Intracellular trafficking and secretion];
230-362 9.02e-03

Karyopherin (importin) alpha [Intracellular trafficking and secretion];


Pssm-ID: 227396 [Multi-domain]  Cd Length: 526  Bit Score: 39.49  E-value: 9.02e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116007496 230 VISFLSNPSSAIKANAAAYLQHLCYMDDPNKQRTRSLGGIPPLVRLLSYDSPEIHKNACGALRNLSYGrqNDENKRGIKN 309
Cdd:COG5064  290 LVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAG--NTEQIQAVID 367

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 116007496 310 AGGIAALVHLLCRSQETEVKELVTGVLWNMSSC---EDLKRSIIDEALVAVVCSVI 362
Cdd:COG5064  368 ANLIPPLIHLLSSAEYKIKKEACWAISNATSGGlnrPDIIRYLVSQGFIKPLCDLL 423
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH